
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/8312379/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/8312249/UCEC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCEC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=UCEC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/8312249/UCEC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/8312379/transformed.cor.cli.txt"

nPatients in clinical file=535, in cluster file=524, common to both=524
[1]  99 524
[1] "AMP PEAK  1(1P35.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           55                           469 
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           55                           469 
[1] "AMP PEAK  2(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           71                           453 
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           71                           453 
[1] "AMP PEAK  3(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           92                           432 
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           92                           432 
[1] "AMP PEAK  4(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          233                           291 
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          233                           291 
[1] "AMP PEAK  5(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        247                         277 
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        247                         277 
[1] "AMP PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE 
                        213                         311 
  AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE 
                        213                         311 
[1] "AMP PEAK  7(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE 
                          117                           407 
  AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE 
                          117                           407 
[1] "AMP PEAK  8(2Q13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        114                         410 
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        114                         410 
[1] "AMP PEAK  9(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           77                           447 
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           77                           447 
[1] "AMP PEAK 10(3P14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           61                           463 
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           61                           463 
[1] "AMP PEAK 11(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          167                           357 
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          167                           357 
[1] "AMP PEAK 12(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          156                           368 
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          156                           368 
[1] "AMP PEAK 13(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           52                           472 
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           52                           472 
[1] "AMP PEAK 14(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            83                            441 
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            83                            441 
[1] "AMP PEAK 15(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           54                           470 
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           54                           470 
[1] "AMP PEAK 16(6P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          111                           413 
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          111                           413 
[1] "AMP PEAK 17(6Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE 
                           84                           440 
  AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE 
                           84                           440 
[1] "AMP PEAK 18(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE 
                           90                           434 
  AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE 
                           90                           434 
[1] "AMP PEAK 19(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE 
                           156                            368 
  AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE 
                           156                            368 
[1] "AMP PEAK 20(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE 
                           202                            322 
  AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE 
                           202                            322 
[1] "AMP PEAK 21(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE 
                           208                            316 
  AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE 
                           208                            316 
[1] "AMP PEAK 22(9P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE 
                           63                           461 
  AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE 
                           63                           461 
[1] "AMP PEAK 23(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE 
                           37                           487 
  AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE 
                           37                           487 
[1] "AMP PEAK 24(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE 
                           140                            384 
  AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE 
                           140                            384 
[1] "AMP PEAK 25(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE 
                            49                            475 
  AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE 
                            49                            475 
[1] "AMP PEAK 26(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE 
                            71                            453 
  AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE 
                            71                            453 
[1] "AMP PEAK 27(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE 
                            56                            468 
  AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE 
                            56                            468 
[1] "AMP PEAK 28(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE 
                            87                            437 
  AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE 
                            87                            437 
[1] "AMP PEAK 29(12Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE 
                             85                             439 
  AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE 
                             85                             439 
[1] "AMP PEAK 30(12Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE 
                            98                            426 
  AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE 
                            98                            426 
[1] "AMP PEAK 31(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE 
                          56                          468 
  AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE 
                          56                          468 
[1] "AMP PEAK 32(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE 
                            62                            462 
  AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE 
                            62                            462 
[1] "AMP PEAK 33(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE 
                            37                            487 
  AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE 
                            37                            487 
[1] "AMP PEAK 34(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE 
                            63                            461 
  AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE 
                            63                            461 
[1] "AMP PEAK 35(17Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE 
                            67                            457 
  AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE 
                            67                            457 
[1] "AMP PEAK 36(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE 
                          71                          453 
  AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE 
                          71                          453 
[1] "AMP PEAK 37(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE 
                           100                            424 
  AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE 
                           100                            424 
[1] "AMP PEAK 38(18P11.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE 
                             91                             433 
  AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE 
                             91                             433 
[1] "AMP PEAK 39(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE 
                            67                            457 
  AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE 
                            67                            457 
[1] "AMP PEAK 40(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE 
                            88                            436 
  AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE 
                            88                            436 
[1] "AMP PEAK 41(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE 
                             91                             433 
  AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE 
                             91                             433 
[1] "AMP PEAK 42(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE 
                         115                          409 
  AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE 
                         115                          409 
[1] "AMP PEAK 43(20P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE 
                         113                          411 
  AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE 
                         113                          411 
[1] "AMP PEAK 44(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE 
                            142                             382 
  AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE 
                            142                             382 
[1] "AMP PEAK 45(20Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE 
                            145                             379 
  AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE 
                            145                             379 
[1] "AMP PEAK 46(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE 
                            142                             382 
  AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE 
                            142                             382 
[1] "AMP PEAK 47(22Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE 
                            59                            465 
  AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE 
                            59                            465 
[1] "AMP PEAK 48(XP11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE 
                            87                            437 
  AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE 
                            87                            437 
[1] "AMP PEAK 49(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE 
                         89                         435 
  AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE 
                         89                         435 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            70                            454 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            70                            454 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            82                            442 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            82                            442 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           25                           499 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           25                           499 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           46                           478 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           46                           478 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           51                           473 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           51                           473 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           75                           449 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           75                           449 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            31                            493 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            31                            493 
[1] "DEL PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           91                           433 
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           91                           433 
[1] "DEL PEAK  9(4P15.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE 
                            95                            429 
  DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE 
                            95                            429 
[1] "DEL PEAK 10(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          102                           422 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          102                           422 
[1] "DEL PEAK 11(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          125                           399 
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          125                           399 
[1] "DEL PEAK 12(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE 
                          106                           418 
  DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE 
                          106                           418 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         45                         479 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         45                         479 
[1] "DEL PEAK 14(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           70                           454 
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           70                           454 
[1] "DEL PEAK 15(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            483 
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            483 
[1] "DEL PEAK 16(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           53                           471 
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           53                           471 
[1] "DEL PEAK 17(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           62                           462 
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           62                           462 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          113                           411 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          113                           411 
[1] "DEL PEAK 19(8P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          111                           413 
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          111                           413 
[1] "DEL PEAK 20(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         75                         449 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         75                         449 
[1] "DEL PEAK 21(9Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          123                           401 
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          123                           401 
[1] "DEL PEAK 22(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          128                           396 
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          128                           396 
[1] "DEL PEAK 23(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                             73                             451 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                             73                             451 
[1] "DEL PEAK 24(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE 
                            99                            425 
  DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE 
                            99                            425 
[1] "DEL PEAK 25(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                            66                            458 
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                            66                            458 
[1] "DEL PEAK 26(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                          89                          435 
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                          89                          435 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            53                            471 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            53                            471 
[1] "DEL PEAK 28(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                             64                             460 
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                             64                             460 
[1] "DEL PEAK 29(13Q11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE 
                          96                          428 
  DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE 
                          96                          428 
[1] "DEL PEAK 30(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           103                            421 
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           103                            421 
[1] "DEL PEAK 31(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE 
                            69                            455 
  DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE 
                            69                            455 
[1] "DEL PEAK 32(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           135                            389 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           135                            389 
[1] "DEL PEAK 33(15Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE 
                         110                          414 
  DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE 
                         110                          414 
[1] "DEL PEAK 34(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            88                            436 
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            88                            436 
[1] "DEL PEAK 35(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE 
                         150                          374 
  DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE 
                         150                          374 
[1] "DEL PEAK 36(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE 
                           161                            363 
  DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE 
                           161                            363 
[1] "DEL PEAK 37(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE 
                           115                            409 
  DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE 
                           115                            409 
[1] "DEL PEAK 38(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE 
                           122                            402 
  DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE 
                           122                            402 
[1] "DEL PEAK 39(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                           116                            408 
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                           116                            408 
[1] "DEL PEAK 40(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                           101                            423 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                           101                            423 
[1] "DEL PEAK 41(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE 
                            100                             424 
  DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE 
                            100                             424 
[1] "DEL PEAK 42(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                            90                            434 
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                            90                            434 
[1] "DEL PEAK 43(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                          96                          428 
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                          96                          428 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           147                            377 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           147                            377 
[1] "DEL PEAK 45(19P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                          56                          468 
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                          56                          468 
[1] "DEL PEAK 46(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE 
                             64                             460 
  DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE 
                             64                             460 
[1] "DEL PEAK 47(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            34                            490 
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            34                            490 
[1] "DEL PEAK 48(22Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE 
                            84                            440 
  DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE 
                            84                            440 
[1] "DEL PEAK 49(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE 
                            132                             392 
  DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE 
                            132                             392 
[1] "DEL PEAK 50(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE 
                           84                           440 
  DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE 
                           84                           440 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 524 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 524 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     13     12     12     10
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED        1      0      5
  AMP PEAK  1(1P35.2) WILD-TYPE     18     19     10
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           0                            19
  CLUS_3                           5                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED        0      7     48      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE    305     41    106     12      5
D1V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       33      5      6
  AMP PEAK  1(1P35.2) WILD-TYPE    119     89    158
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          33                           119
  CLUS_2                           5                            89
  CLUS_3                           6                           158
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P35.2) MUTATED        2     10      2      0      0      3
  AMP PEAK  1(1P35.2) WILD-TYPE     39     27     37     12     41     21
D1V5, multiclass
D1V6, binary
                               cls
clus                              0   1
  AMP PEAK  1(1P35.2) MUTATED     8   9
  AMP PEAK  1(1P35.2) WILD-TYPE 113  64
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P35.2) MUTATED      8    9
  AMP PEAK  1(1P35.2) WILD-TYPE  113   64
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           8                           113
  CLUS_2                           9                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       48      1      5
  AMP PEAK  1(1P35.2) WILD-TYPE    176    149    140
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          48                           176
  CLUS_2                           1                           149
  CLUS_3                           5                           140
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED        6      0     48
  AMP PEAK  1(1P35.2) WILD-TYPE    141    132    192
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           6                           141
  CLUS_2                           0                           132
  CLUS_3                          48                           192
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       41      5      6
  AMP PEAK  1(1P35.2) WILD-TYPE    164    154    135
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          41                           164
  CLUS_2                           5                           154
  CLUS_3                           6                           135
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED        2      6     44
  AMP PEAK  1(1P35.2) WILD-TYPE      6    210    237
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           6                           210
  CLUS_3                          44                           237
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       30      7      5
  AMP PEAK  1(1P35.2) WILD-TYPE    145    110     85
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          30                           145
  CLUS_2                           7                           110
  CLUS_3                           5                            85
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED        3     32      7
  AMP PEAK  1(1P35.2) WILD-TYPE     27    166    147
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          32                           166
  CLUS_3                           7                           147

Clustering(2) Variable = AMP PEAK  2(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        1      6      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     13     11     12     10
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED        1      0      6
  AMP PEAK  2(1P34.2) WILD-TYPE     18     19      9
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           0                            19
  CLUS_3                           6                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED        0      5     66      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE    305     43     88     12      5
D2V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       42     14      5
  AMP PEAK  2(1P34.2) WILD-TYPE    110     80    159
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          42                           110
  CLUS_2                          14                            80
  CLUS_3                           5                           159
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P34.2) MUTATED        2      7      2      0      0      3
  AMP PEAK  2(1P34.2) WILD-TYPE     39     30     37     12     41     21
D2V5, multiclass
D2V6, binary
                               cls
clus                              0   1
  AMP PEAK  2(1P34.2) MUTATED     7   7
  AMP PEAK  2(1P34.2) WILD-TYPE 114  66
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1P34.2) MUTATED      7    7
  AMP PEAK  2(1P34.2) WILD-TYPE  114   66
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           7                           114
  CLUS_2                           7                            66
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       63      2      5
  AMP PEAK  2(1P34.2) WILD-TYPE    161    148    140
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          63                           161
  CLUS_2                           2                           148
  CLUS_3                           5                           140
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED        6      1     63
  AMP PEAK  2(1P34.2) WILD-TYPE    141    131    177
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           6                           141
  CLUS_2                           1                           131
  CLUS_3                          63                           177
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       58      4      6
  AMP PEAK  2(1P34.2) WILD-TYPE    147    155    135
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          58                           147
  CLUS_2                           4                           155
  CLUS_3                           6                           135
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED        2      6     60
  AMP PEAK  2(1P34.2) WILD-TYPE      6    210    221
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           6                           210
  CLUS_3                          60                           221
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       42      6      9
  AMP PEAK  2(1P34.2) WILD-TYPE    133    111     81
D2V11, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          42                           133
  CLUS_2                           6                           111
  CLUS_3                           9                            81
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED        2     49      6
  AMP PEAK  2(1P34.2) WILD-TYPE     28    149    148
D2V12, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                          49                           149
  CLUS_3                           6                           148

Clustering(3) Variable = AMP PEAK  3(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED        5      5      0      0
  AMP PEAK  3(1P22.3) WILD-TYPE      9     12     12     10
D3V1, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED        5      0      5
  AMP PEAK  3(1P22.3) WILD-TYPE     14     19     10
D3V2, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           5                            14
  CLUS_2                           0                            19
  CLUS_3                           5                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1P22.3) MUTATED       31      7     48      1      5
  AMP PEAK  3(1P22.3) WILD-TYPE    274     41    106     11      0
D3V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       38     10     24
  AMP PEAK  3(1P22.3) WILD-TYPE    114     84    140
D3V4, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          38                           114
  CLUS_2                          10                            84
  CLUS_3                          24                           140
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1P22.3) MUTATED        4      6      7      1      7      3
  AMP PEAK  3(1P22.3) WILD-TYPE     37     31     32     11     34     21
D3V5, multiclass
D3V6, binary
                               cls
clus                              0   1
  AMP PEAK  3(1P22.3) MUTATED    19   9
  AMP PEAK  3(1P22.3) WILD-TYPE 102  64
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1P22.3) MUTATED     19    9
  AMP PEAK  3(1P22.3) WILD-TYPE  102   64
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          19                           102
  CLUS_2                           9                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       55     27      8
  AMP PEAK  3(1P22.3) WILD-TYPE    169    123    137
D3V7, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          55                           169
  CLUS_2                          27                           123
  CLUS_3                           8                           137
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED        8     24     58
  AMP PEAK  3(1P22.3) WILD-TYPE    139    108    182
D3V8, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           8                           139
  CLUS_2                          24                           108
  CLUS_3                          58                           182
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       47      8     33
  AMP PEAK  3(1P22.3) WILD-TYPE    158    151    108
D3V9, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          47                           158
  CLUS_2                           8                           151
  CLUS_3                          33                           108
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED        1     22     65
  AMP PEAK  3(1P22.3) WILD-TYPE      7    194    216
D3V10, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                          22                           194
  CLUS_3                          65                           216
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       45     13     10
  AMP PEAK  3(1P22.3) WILD-TYPE    130    104     80
D3V11, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          45                           130
  CLUS_2                          13                           104
  CLUS_3                          10                            80
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED        5     50     13
  AMP PEAK  3(1P22.3) WILD-TYPE     25    148    141
D3V12, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          50                           148
  CLUS_3                          13                           141

Clustering(4) Variable = AMP PEAK  4(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       11     12      5      2
  AMP PEAK  4(1Q21.3) WILD-TYPE      3      5      7      8
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          11                             3
  CLUS_2                          12                             5
  CLUS_3                           5                             7
  CLUS_4                           2                             8
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       13      6     11
  AMP PEAK  4(1Q21.3) WILD-TYPE      6     13      4
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          13                             6
  CLUS_2                           6                            13
  CLUS_3                          11                             4
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q21.3) MUTATED       91     29     99      9      5
  AMP PEAK  4(1Q21.3) WILD-TYPE    214     19     55      3      0
D4V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       82     35     59
  AMP PEAK  4(1Q21.3) WILD-TYPE     70     59    105
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          82                            70
  CLUS_2                          35                            59
  CLUS_3                          59                           105
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(1Q21.3) MUTATED       14     15     17      8     19      8
  AMP PEAK  4(1Q21.3) WILD-TYPE     27     22     22      4     22     16
D4V5, multiclass
D4V6, binary
                               cls
clus                             0  1
  AMP PEAK  4(1Q21.3) MUTATED   55 26
  AMP PEAK  4(1Q21.3) WILD-TYPE 66 47
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(1Q21.3) MUTATED     55   26
  AMP PEAK  4(1Q21.3) WILD-TYPE   66   47
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          55                            66
  CLUS_2                          26                            47
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED      123     67     41
  AMP PEAK  4(1Q21.3) WILD-TYPE    101     83    104
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                         123                           101
  CLUS_2                          67                            83
  CLUS_3                          41                           104
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       42     62    127
  AMP PEAK  4(1Q21.3) WILD-TYPE    105     70    113
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          42                           105
  CLUS_2                          62                            70
  CLUS_3                         127                           113
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED      108     46     72
  AMP PEAK  4(1Q21.3) WILD-TYPE     97    113     69
D4V9, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                         108                            97
  CLUS_2                          46                           113
  CLUS_3                          72                            69
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED        6     76    144
  AMP PEAK  4(1Q21.3) WILD-TYPE      2    140    137
D4V10, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                           6                             2
  CLUS_2                          76                           140
  CLUS_3                         144                           137
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       89     43     39
  AMP PEAK  4(1Q21.3) WILD-TYPE     86     74     51
D4V11, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          89                            86
  CLUS_2                          43                            74
  CLUS_3                          39                            51
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       11    109     51
  AMP PEAK  4(1Q21.3) WILD-TYPE     19     89    103
D4V12, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                         109                            89
  CLUS_3                          51                           103

Clustering(5) Variable = AMP PEAK  5(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       11     11      5      2
  AMP PEAK  5(1Q22) WILD-TYPE      3      6      7      8
D5V1, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        11                           3
  CLUS_2                        11                           6
  CLUS_3                         5                           7
  CLUS_4                         2                           8
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       13      6     10
  AMP PEAK  5(1Q22) WILD-TYPE      6     13      5
D5V2, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        13                           6
  CLUS_2                         6                          13
  CLUS_3                        10                           5
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q22) MUTATED       94     30    109      9      5
  AMP PEAK  5(1Q22) WILD-TYPE    211     18     45      3      0
D5V3, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       89     39     60
  AMP PEAK  5(1Q22) WILD-TYPE     63     55    104
D5V4, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        89                          63
  CLUS_2                        39                          55
  CLUS_3                        60                         104
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(1Q22) MUTATED       13     19     19      8     19      8
  AMP PEAK  5(1Q22) WILD-TYPE     28     18     20      4     22     16
D5V5, multiclass
D5V6, binary
                             cls
clus                           0  1
  AMP PEAK  5(1Q22) MUTATED   58 28
  AMP PEAK  5(1Q22) WILD-TYPE 63 45
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(1Q22) MUTATED     58   28
  AMP PEAK  5(1Q22) WILD-TYPE   63   45
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        58                          63
  CLUS_2                        28                          45
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      132     68     45
  AMP PEAK  5(1Q22) WILD-TYPE     92     82    100
D5V7, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       132                          92
  CLUS_2                        68                          82
  CLUS_3                        45                         100
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       46     63    136
  AMP PEAK  5(1Q22) WILD-TYPE    101     69    104
D5V8, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        46                         101
  CLUS_2                        63                          69
  CLUS_3                       136                         104
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      115     51     73
  AMP PEAK  5(1Q22) WILD-TYPE     90    108     68
D5V9, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       115                          90
  CLUS_2                        51                         108
  CLUS_3                        73                          68
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED        6     82    151
  AMP PEAK  5(1Q22) WILD-TYPE      2    134    130
D5V10, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                         6                           2
  CLUS_2                        82                         134
  CLUS_3                       151                         130
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       93     48     42
  AMP PEAK  5(1Q22) WILD-TYPE     82     69     48
D5V11, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        93                          82
  CLUS_2                        48                          69
  CLUS_3                        42                          48
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       11    116     56
  AMP PEAK  5(1Q22) WILD-TYPE     19     82     98
D5V12, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        11                          19
  CLUS_2                       116                          82
  CLUS_3                        56                          98

Clustering(6) Variable = AMP PEAK  6(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       10     11      4      2
  AMP PEAK  6(1Q44) WILD-TYPE      4      6      8      8
D6V1, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        10                           4
  CLUS_2                        11                           6
  CLUS_3                         4                           8
  CLUS_4                         2                           8
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       11      6     10
  AMP PEAK  6(1Q44) WILD-TYPE      8     13      5
D6V2, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        11                           8
  CLUS_2                         6                          13
  CLUS_3                        10                           5
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(1Q44) MUTATED       95     27     77      9      5
  AMP PEAK  6(1Q44) WILD-TYPE    210     21     77      3      0
D6V3, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       68     29     59
  AMP PEAK  6(1Q44) WILD-TYPE     84     65    105
D6V4, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        68                          84
  CLUS_2                        29                          65
  CLUS_3                        59                         105
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(1Q44) MUTATED       14     14     17      7     19      9
  AMP PEAK  6(1Q44) WILD-TYPE     27     23     22      5     22     15
D6V5, multiclass
D6V6, binary
                             cls
clus                           0  1
  AMP PEAK  6(1Q44) MUTATED   57 23
  AMP PEAK  6(1Q44) WILD-TYPE 64 50
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  6(1Q44) MUTATED     57   23
  AMP PEAK  6(1Q44) WILD-TYPE   64   50
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        57                          64
  CLUS_2                        23                          50
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       97     72     43
  AMP PEAK  6(1Q44) WILD-TYPE    127     78    102
D6V7, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        97                         127
  CLUS_2                        72                          78
  CLUS_3                        43                         102
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       44     65    103
  AMP PEAK  6(1Q44) WILD-TYPE    103     67    137
D6V8, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        44                         103
  CLUS_2                        65                          67
  CLUS_3                       103                         137
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       85     50     73
  AMP PEAK  6(1Q44) WILD-TYPE    120    109     68
D6V9, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        85                         120
  CLUS_2                        50                         109
  CLUS_3                        73                          68
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED        5     82    121
  AMP PEAK  6(1Q44) WILD-TYPE      3    134    160
D6V10, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         5                           3
  CLUS_2                        82                         134
  CLUS_3                       121                         160
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       67     45     39
  AMP PEAK  6(1Q44) WILD-TYPE    108     72     51
D6V11, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        67                         108
  CLUS_2                        45                          72
  CLUS_3                        39                          51
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       11     88     52
  AMP PEAK  6(1Q44) WILD-TYPE     19    110    102
D6V12, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        11                          19
  CLUS_2                        88                         110
  CLUS_3                        52                         102

Clustering(7) Variable = AMP PEAK  7(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED        1      4      2      1
  AMP PEAK  7(2P24.3) WILD-TYPE     13     13     10      9
D7V1, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           2                            10
  CLUS_4                           1                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED        2      2      4
  AMP PEAK  7(2P24.3) WILD-TYPE     17     17     11
D7V2, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           2                            17
  CLUS_2                           2                            17
  CLUS_3                           4                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2P24.3) MUTATED       15     29     68      3      2
  AMP PEAK  7(2P24.3) WILD-TYPE    290     19     86      9      3
D7V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       58     15     19
  AMP PEAK  7(2P24.3) WILD-TYPE     94     79    145
D7V4, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          58                            94
  CLUS_2                          15                            79
  CLUS_3                          19                           145
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(2P24.3) MUTATED        4     11      3      1      6      7
  AMP PEAK  7(2P24.3) WILD-TYPE     37     26     36     11     35     17
D7V5, multiclass
D7V6, binary
                               cls
clus                              0   1
  AMP PEAK  7(2P24.3) MUTATED    19  13
  AMP PEAK  7(2P24.3) WILD-TYPE 102  60
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(2P24.3) MUTATED     19   13
  AMP PEAK  7(2P24.3) WILD-TYPE  102   60
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          19                           102
  CLUS_2                          13                            60
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       80     21     15
  AMP PEAK  7(2P24.3) WILD-TYPE    144    129    130
D7V7, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          80                           144
  CLUS_2                          21                           129
  CLUS_3                          15                           130
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       17     15     84
  AMP PEAK  7(2P24.3) WILD-TYPE    130    117    156
D7V8, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                          15                           117
  CLUS_3                          84                           156
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       70     20     22
  AMP PEAK  7(2P24.3) WILD-TYPE    135    139    119
D7V9, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          70                           135
  CLUS_2                          20                           139
  CLUS_3                          22                           119
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED        1     29     82
  AMP PEAK  7(2P24.3) WILD-TYPE      7    187    199
D7V10, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                          29                           187
  CLUS_3                          82                           199
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       52     13     21
  AMP PEAK  7(2P24.3) WILD-TYPE    123    104     69
D7V11, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          52                           123
  CLUS_2                          13                           104
  CLUS_3                          21                            69
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED        5     63     18
  AMP PEAK  7(2P24.3) WILD-TYPE     25    135    136
D7V12, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          63                           135
  CLUS_3                          18                           136

Clustering(8) Variable = AMP PEAK  8(2Q13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED        2      6      2      0
  AMP PEAK  8(2Q13) WILD-TYPE     12     11     10     10
D8V1, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         2                          12
  CLUS_2                         6                          11
  CLUS_3                         2                          10
  CLUS_4                         0                          10
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED        3      1      6
  AMP PEAK  8(2Q13) WILD-TYPE     16     18      9
D8V2, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         3                          16
  CLUS_2                         1                          18
  CLUS_3                         6                           9
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(2Q13) MUTATED        7     23     82      1      1
  AMP PEAK  8(2Q13) WILD-TYPE    298     25     72     11      4
D8V3, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       63     18     10
  AMP PEAK  8(2Q13) WILD-TYPE     89     76    154
D8V4, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        63                          89
  CLUS_2                        18                          76
  CLUS_3                        10                         154
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(2Q13) MUTATED        5     12      1      1      4      7
  AMP PEAK  8(2Q13) WILD-TYPE     36     25     38     11     37     17
D8V5, multiclass
D8V6, binary
                             cls
clus                            0   1
  AMP PEAK  8(2Q13) MUTATED    15  15
  AMP PEAK  8(2Q13) WILD-TYPE 106  58
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(2Q13) MUTATED     15   15
  AMP PEAK  8(2Q13) WILD-TYPE  106   58
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        15                         106
  CLUS_2                        15                          58
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       91     13      8
  AMP PEAK  8(2Q13) WILD-TYPE    133    137    137
D8V7, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        91                         133
  CLUS_2                        13                         137
  CLUS_3                         8                         137
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED        9      9     94
  AMP PEAK  8(2Q13) WILD-TYPE    138    123    146
D8V8, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         9                         138
  CLUS_2                         9                         123
  CLUS_3                        94                         146
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       86     10     14
  AMP PEAK  8(2Q13) WILD-TYPE    119    149    127
D8V9, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        86                         119
  CLUS_2                        10                         149
  CLUS_3                        14                         127
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED        0     17     93
  AMP PEAK  8(2Q13) WILD-TYPE      8    199    188
D8V10, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         0                           8
  CLUS_2                        17                         199
  CLUS_3                        93                         188
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       57      7     23
  AMP PEAK  8(2Q13) WILD-TYPE    118    110     67
D8V11, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        57                         118
  CLUS_2                         7                         110
  CLUS_3                        23                          67
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED        2     74     11
  AMP PEAK  8(2Q13) WILD-TYPE     28    124    143
D8V12, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         2                          28
  CLUS_2                        74                         124
  CLUS_3                        11                         143

Clustering(9) Variable = AMP PEAK  9(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED        1      5      2      0
  AMP PEAK  9(3P25.1) WILD-TYPE     13     12     10     10
D9V1, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           2                            10
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED        3      1      4
  AMP PEAK  9(3P25.1) WILD-TYPE     16     18     11
D9V2, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           3                            16
  CLUS_2                           1                            18
  CLUS_3                           4                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P25.1) MUTATED        4      6     56      9      2
  AMP PEAK  9(3P25.1) WILD-TYPE    301     42     98      3      3
D9V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       38     16      9
  AMP PEAK  9(3P25.1) WILD-TYPE    114     78    155
D9V4, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          38                           114
  CLUS_2                          16                            78
  CLUS_3                           9                           155
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(3P25.1) MUTATED        6      7      3      1      0      1
  AMP PEAK  9(3P25.1) WILD-TYPE     35     30     36     11     41     23
D9V5, multiclass
D9V6, binary
                               cls
clus                              0   1
  AMP PEAK  9(3P25.1) MUTATED     9   9
  AMP PEAK  9(3P25.1) WILD-TYPE 112  64
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(3P25.1) MUTATED      9    9
  AMP PEAK  9(3P25.1) WILD-TYPE  112   64
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           9                           112
  CLUS_2                           9                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       62      4     10
  AMP PEAK  9(3P25.1) WILD-TYPE    162    146    135
D9V7, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          62                           162
  CLUS_2                           4                           146
  CLUS_3                          10                           135
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       10      2     64
  AMP PEAK  9(3P25.1) WILD-TYPE    137    130    176
D9V8, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          10                           137
  CLUS_2                           2                           130
  CLUS_3                          64                           176
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       52     11      8
  AMP PEAK  9(3P25.1) WILD-TYPE    153    148    133
D9V9, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          52                           153
  CLUS_2                          11                           148
  CLUS_3                           8                           133
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED        1     15     55
  AMP PEAK  9(3P25.1) WILD-TYPE      7    201    226
D9V10, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                          15                           201
  CLUS_3                          55                           226
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       37      8     13
  AMP PEAK  9(3P25.1) WILD-TYPE    138    109     77
D9V11, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          37                           138
  CLUS_2                           8                           109
  CLUS_3                          13                            77
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED        3     45     10
  AMP PEAK  9(3P25.1) WILD-TYPE     27    153    144
D9V12, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          45                           153
  CLUS_3                          10                           144

Clustering(10) Variable = AMP PEAK 10(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        0      2      1      0
  AMP PEAK 10(3P14.1) WILD-TYPE     14     15     11     10
D10V1, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           2                            15
  CLUS_3                           1                            11
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        1      1      1
  AMP PEAK 10(3P14.1) WILD-TYPE     18     18     14
D10V2, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           1                            18
  CLUS_3                           1                            14
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3P14.1) MUTATED        4      6     40      9      2
  AMP PEAK 10(3P14.1) WILD-TYPE    301     42    114      3      3
D10V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       31     11     10
  AMP PEAK 10(3P14.1) WILD-TYPE    121     83    154
D10V4, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          31                           121
  CLUS_2                          11                            83
  CLUS_3                          10                           154
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(3P14.1) MUTATED        4      6      2      1      0      0
  AMP PEAK 10(3P14.1) WILD-TYPE     37     31     37     11     41     24
D10V5, multiclass
D10V6, binary
                               cls
clus                              0   1
  AMP PEAK 10(3P14.1) MUTATED     6   7
  AMP PEAK 10(3P14.1) WILD-TYPE 115  66
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(3P14.1) MUTATED      6    7
  AMP PEAK 10(3P14.1) WILD-TYPE  115   66
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                           7                            66
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       46      3     11
  AMP PEAK 10(3P14.1) WILD-TYPE    178    147    134
D10V7, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          46                           178
  CLUS_2                           3                           147
  CLUS_3                          11                           134
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       10      2     48
  AMP PEAK 10(3P14.1) WILD-TYPE    137    130    192
D10V8, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          10                           137
  CLUS_2                           2                           130
  CLUS_3                          48                           192
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       40     10      8
  AMP PEAK 10(3P14.1) WILD-TYPE    165    149    133
D10V9, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          40                           165
  CLUS_2                          10                           149
  CLUS_3                           8                           133
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        2     12     44
  AMP PEAK 10(3P14.1) WILD-TYPE      6    204    237
D10V10, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          12                           204
  CLUS_3                          44                           237
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       28      8     13
  AMP PEAK 10(3P14.1) WILD-TYPE    147    109     77
D10V11, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          28                           147
  CLUS_2                           8                           109
  CLUS_3                          13                            77
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        4     35     10
  AMP PEAK 10(3P14.1) WILD-TYPE     26    163    144
D10V12, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          35                           163
  CLUS_3                          10                           144

Clustering(11) Variable = AMP PEAK 11(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED        1     11      1      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     13      6     11     10
D11V1, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          11                             6
  CLUS_3                           1                            11
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED        2      1     10
  AMP PEAK 11(3Q26.2) WILD-TYPE     17     18      5
D11V2, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           2                            17
  CLUS_2                           1                            18
  CLUS_3                          10                             5
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED       12     12    128     11      4
  AMP PEAK 11(3Q26.2) WILD-TYPE    293     36     26      1      1
D11V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       93     27     22
  AMP PEAK 11(3Q26.2) WILD-TYPE     59     67    142
D11V4, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          93                            59
  CLUS_2                          27                            67
  CLUS_3                          22                           142
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(3Q26.2) MUTATED       11     15      4      1      1      6
  AMP PEAK 11(3Q26.2) WILD-TYPE     30     22     35     11     40     18
D11V5, multiclass
D11V6, binary
                               cls
clus                              0   1
  AMP PEAK 11(3Q26.2) MUTATED    17  21
  AMP PEAK 11(3Q26.2) WILD-TYPE 104  52
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(3Q26.2) MUTATED     17   21
  AMP PEAK 11(3Q26.2) WILD-TYPE  104   52
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          17                           104
  CLUS_2                          21                            52
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      134      9     22
  AMP PEAK 11(3Q26.2) WILD-TYPE     90    141    123
D11V7, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         134                            90
  CLUS_2                           9                           141
  CLUS_3                          22                           123
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       23      5    137
  AMP PEAK 11(3Q26.2) WILD-TYPE    124    127    103
D11V8, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          23                           124
  CLUS_2                           5                           127
  CLUS_3                         137                           103
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      121     23     15
  AMP PEAK 11(3Q26.2) WILD-TYPE     84    136    126
D11V9, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         121                            84
  CLUS_2                          23                           136
  CLUS_3                          15                           126
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED        5     32    122
  AMP PEAK 11(3Q26.2) WILD-TYPE      3    184    159
D11V10, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                          32                           184
  CLUS_3                         122                           159
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       86     21     28
  AMP PEAK 11(3Q26.2) WILD-TYPE     89     96     62
D11V11, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          86                            89
  CLUS_2                          21                            96
  CLUS_3                          28                            62
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED        8    101     26
  AMP PEAK 11(3Q26.2) WILD-TYPE     22     97    128
D11V12, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                         101                            97
  CLUS_3                          26                           128

Clustering(12) Variable = AMP PEAK 12(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED        1     10      1      0
  AMP PEAK 12(3Q26.2) WILD-TYPE     13      7     11     10
D12V1, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          10                             7
  CLUS_3                           1                            11
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED        2      1      9
  AMP PEAK 12(3Q26.2) WILD-TYPE     17     18      6
D12V2, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           2                            17
  CLUS_2                           1                            18
  CLUS_3                           9                             6
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(3Q26.2) MUTATED        8     11    122     11      4
  AMP PEAK 12(3Q26.2) WILD-TYPE    297     37     32      1      1
D12V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       91     23     19
  AMP PEAK 12(3Q26.2) WILD-TYPE     61     71    145
D12V4, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          91                            61
  CLUS_2                          23                            71
  CLUS_3                          19                           145
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(3Q26.2) MUTATED       11     13      4      1      1      7
  AMP PEAK 12(3Q26.2) WILD-TYPE     30     24     35     11     40     17
D12V5, multiclass
D12V6, binary
                               cls
clus                              0   1
  AMP PEAK 12(3Q26.2) MUTATED    17  20
  AMP PEAK 12(3Q26.2) WILD-TYPE 104  53
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(3Q26.2) MUTATED     17   20
  AMP PEAK 12(3Q26.2) WILD-TYPE  104   53
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          17                           104
  CLUS_2                          20                            53
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      127      9     18
  AMP PEAK 12(3Q26.2) WILD-TYPE     97    141    127
D12V7, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         127                            97
  CLUS_2                           9                           141
  CLUS_3                          18                           127
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       19      4    131
  AMP PEAK 12(3Q26.2) WILD-TYPE    128    128    109
D12V8, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          19                           128
  CLUS_2                           4                           128
  CLUS_3                         131                           109
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      113     19     16
  AMP PEAK 12(3Q26.2) WILD-TYPE     92    140    125
D12V9, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         113                            92
  CLUS_2                          19                           140
  CLUS_3                          16                           125
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED        5     24    119
  AMP PEAK 12(3Q26.2) WILD-TYPE      3    192    162
D12V10, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                          24                           192
  CLUS_3                         119                           162
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       82     17     26
  AMP PEAK 12(3Q26.2) WILD-TYPE     93    100     64
D12V11, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          82                            93
  CLUS_2                          17                           100
  CLUS_3                          26                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED        6     99     20
  AMP PEAK 12(3Q26.2) WILD-TYPE     24     99    134
D12V12, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          99                            99
  CLUS_3                          20                           134

Clustering(13) Variable = AMP PEAK 13(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED        1      5      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE     13     12     12     10
D13V1, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED        1      0      5
  AMP PEAK 13(4P16.3) WILD-TYPE     18     19     10
D13V2, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           0                            19
  CLUS_3                           5                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(4P16.3) MUTATED        2      1     49      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE    303     47    105     12      5
D13V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       25     12      6
  AMP PEAK 13(4P16.3) WILD-TYPE    127     82    158
D13V4, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          25                           127
  CLUS_2                          12                            82
  CLUS_3                           6                           158
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(4P16.3) MUTATED        4      5      1      0      0      2
  AMP PEAK 13(4P16.3) WILD-TYPE     37     32     38     12     41     22
D13V5, multiclass
D13V6, binary
                               cls
clus                              0   1
  AMP PEAK 13(4P16.3) MUTATED     3   9
  AMP PEAK 13(4P16.3) WILD-TYPE 118  64
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(4P16.3) MUTATED      3    9
  AMP PEAK 13(4P16.3) WILD-TYPE  118   64
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           3                           118
  CLUS_2                           9                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       48      1      2
  AMP PEAK 13(4P16.3) WILD-TYPE    176    149    143
D13V7, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          48                           176
  CLUS_2                           1                           149
  CLUS_3                           2                           143
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED        3      1     47
  AMP PEAK 13(4P16.3) WILD-TYPE    144    131    193
D13V8, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           1                           131
  CLUS_3                          47                           193
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       41      4      3
  AMP PEAK 13(4P16.3) WILD-TYPE    164    155    138
D13V9, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          41                           164
  CLUS_2                           4                           155
  CLUS_3                           3                           138
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED        1      5     42
  AMP PEAK 13(4P16.3) WILD-TYPE      7    211    239
D13V10, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           5                           211
  CLUS_3                          42                           239
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       28      5      7
  AMP PEAK 13(4P16.3) WILD-TYPE    147    112     83
D13V11, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          28                           147
  CLUS_2                           5                           112
  CLUS_3                           7                            83
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED        0     34      6
  AMP PEAK 13(4P16.3) WILD-TYPE     30    164    148
D13V12, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           0                            30
  CLUS_2                          34                           164
  CLUS_3                           6                           148

Clustering(14) Variable = AMP PEAK 14(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        2      5      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     12     12     11     10
D14V1, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                             12
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED        3      0      5
  AMP PEAK 14(5P15.33) WILD-TYPE     16     19     10
D14V2, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            3                             16
  CLUS_2                            0                             19
  CLUS_3                            5                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5P15.33) MUTATED        4      5     73      0      1
  AMP PEAK 14(5P15.33) WILD-TYPE    301     43     81     12      4
D14V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       51     12      7
  AMP PEAK 14(5P15.33) WILD-TYPE    101     82    157
D14V4, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           51                            101
  CLUS_2                           12                             82
  CLUS_3                            7                            157
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(5P15.33) MUTATED        3      5      2      0      3      5
  AMP PEAK 14(5P15.33) WILD-TYPE     38     32     37     12     38     19
D14V5, multiclass
D14V6, binary
                                cls
clus                               0   1
  AMP PEAK 14(5P15.33) MUTATED    10   8
  AMP PEAK 14(5P15.33) WILD-TYPE 111  65
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(5P15.33) MUTATED     10    8
  AMP PEAK 14(5P15.33) WILD-TYPE  111   65
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                            8                             65
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       73      6      3
  AMP PEAK 14(5P15.33) WILD-TYPE    151    144    142
D14V7, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           73                            151
  CLUS_2                            6                            144
  CLUS_3                            3                            142
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED        5      5     72
  AMP PEAK 14(5P15.33) WILD-TYPE    142    127    168
D14V8, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            5                            142
  CLUS_2                            5                            127
  CLUS_3                           72                            168
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       65      5     11
  AMP PEAK 14(5P15.33) WILD-TYPE    140    154    130
D14V9, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           65                            140
  CLUS_2                            5                            154
  CLUS_3                           11                            130
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED        3     10     68
  AMP PEAK 14(5P15.33) WILD-TYPE      5    206    213
D14V10, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                           10                            206
  CLUS_3                           68                            213
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       49      6     13
  AMP PEAK 14(5P15.33) WILD-TYPE    126    111     77
D14V11, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           49                            126
  CLUS_2                            6                            111
  CLUS_3                           13                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED        6     55      7
  AMP PEAK 14(5P15.33) WILD-TYPE     24    143    147
D14V12, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           55                            143
  CLUS_3                            7                            147

Clustering(15) Variable = AMP PEAK 15(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        0      3      0      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     14     14     12     10
D15V1, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           3                            14
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED        0      0      3
  AMP PEAK 15(5Q35.3) WILD-TYPE     19     19     12
D15V2, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           3                            12
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(5Q35.3) MUTATED        2      5     46      0      1
  AMP PEAK 15(5Q35.3) WILD-TYPE    303     43    108     12      4
D15V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       28     13      6
  AMP PEAK 15(5Q35.3) WILD-TYPE    124     81    158
D15V4, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          28                           124
  CLUS_2                          13                            81
  CLUS_3                           6                           158
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(5Q35.3) MUTATED        1      5      0      0      3      1
  AMP PEAK 15(5Q35.3) WILD-TYPE     40     32     39     12     38     23
D15V5, multiclass
D15V6, binary
                               cls
clus                              0   1
  AMP PEAK 15(5Q35.3) MUTATED     5   5
  AMP PEAK 15(5Q35.3) WILD-TYPE 116  68
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(5Q35.3) MUTATED      5    5
  AMP PEAK 15(5Q35.3) WILD-TYPE  116   68
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                           5                            68
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       47      4      3
  AMP PEAK 15(5Q35.3) WILD-TYPE    177    146    142
D15V7, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          47                           177
  CLUS_2                           4                           146
  CLUS_3                           3                           142
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED        3      4     47
  AMP PEAK 15(5Q35.3) WILD-TYPE    144    128    193
D15V8, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           4                           128
  CLUS_3                          47                           193
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       39      4      7
  AMP PEAK 15(5Q35.3) WILD-TYPE    166    155    134
D15V9, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          39                           166
  CLUS_2                           4                           155
  CLUS_3                           7                           134
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED        1      9     40
  AMP PEAK 15(5Q35.3) WILD-TYPE      7    207    241
D15V10, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           9                           207
  CLUS_3                          40                           241
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       27      5     10
  AMP PEAK 15(5Q35.3) WILD-TYPE    148    112     80
D15V11, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          27                           148
  CLUS_2                           5                           112
  CLUS_3                          10                            80
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED        4     33      5
  AMP PEAK 15(5Q35.3) WILD-TYPE     26    165    149
D15V12, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          33                           165
  CLUS_3                           5                           149

Clustering(16) Variable = AMP PEAK 16(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED        1      9      2      0
  AMP PEAK 16(6P24.2) WILD-TYPE     13      8     10     10
D16V1, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           9                             8
  CLUS_3                           2                            10
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED        1      2      9
  AMP PEAK 16(6P24.2) WILD-TYPE     18     17      6
D16V2, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           2                            17
  CLUS_3                           9                             6
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6P24.2) MUTATED        9      5     89      7      1
  AMP PEAK 16(6P24.2) WILD-TYPE    296     43     65      5      4
D16V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       64     19     11
  AMP PEAK 16(6P24.2) WILD-TYPE     88     75    153
D16V4, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          64                            88
  CLUS_2                          19                            75
  CLUS_3                          11                           153
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(6P24.2) MUTATED        5     13      2      1      0      3
  AMP PEAK 16(6P24.2) WILD-TYPE     36     24     37     11     41     21
D16V5, multiclass
D16V6, binary
                               cls
clus                              0   1
  AMP PEAK 16(6P24.2) MUTATED    10  14
  AMP PEAK 16(6P24.2) WILD-TYPE 111  59
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(6P24.2) MUTATED     10   14
  AMP PEAK 16(6P24.2) WILD-TYPE  111   59
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          10                           111
  CLUS_2                          14                            59
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       91      5     15
  AMP PEAK 16(6P24.2) WILD-TYPE    133    145    130
D16V7, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          91                           133
  CLUS_2                           5                           145
  CLUS_3                          15                           130
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       14      4     93
  AMP PEAK 16(6P24.2) WILD-TYPE    133    128    147
D16V8, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          14                           133
  CLUS_2                           4                           128
  CLUS_3                          93                           147
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       80     12     15
  AMP PEAK 16(6P24.2) WILD-TYPE    125    147    126
D16V9, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          80                           125
  CLUS_2                          12                           147
  CLUS_3                          15                           126
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED        3     17     87
  AMP PEAK 16(6P24.2) WILD-TYPE      5    199    194
D16V10, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                          17                           199
  CLUS_3                          87                           194
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       58     12     21
  AMP PEAK 16(6P24.2) WILD-TYPE    117    105     69
D16V11, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          58                           117
  CLUS_2                          12                           105
  CLUS_3                          21                            69
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED        5     72     14
  AMP PEAK 16(6P24.2) WILD-TYPE     25    126    140
D16V12, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          72                           126
  CLUS_3                          14                           140

Clustering(17) Variable = AMP PEAK 17(6Q25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6Q25.1) MUTATED        0      2      2      0
  AMP PEAK 17(6Q25.1) WILD-TYPE     14     15     10     10
D17V1, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           2                            15
  CLUS_3                           2                            10
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED        0      2      2
  AMP PEAK 17(6Q25.1) WILD-TYPE     19     17     13
D17V2, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           2                            17
  CLUS_3                           2                            13
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(6Q25.1) MUTATED        7      8     61      7      1
  AMP PEAK 17(6Q25.1) WILD-TYPE    298     40     93      5      4
D17V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       51     11     13
  AMP PEAK 17(6Q25.1) WILD-TYPE    101     83    151
D17V4, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          51                           101
  CLUS_2                          11                            83
  CLUS_3                          13                           151
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(6Q25.1) MUTATED        5      7      1      1      1      2
  AMP PEAK 17(6Q25.1) WILD-TYPE     36     30     38     11     40     22
D17V5, multiclass
D17V6, binary
                               cls
clus                              0   1
  AMP PEAK 17(6Q25.1) MUTATED     6  11
  AMP PEAK 17(6Q25.1) WILD-TYPE 115  62
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 17(6Q25.1) MUTATED      6   11
  AMP PEAK 17(6Q25.1) WILD-TYPE  115   62
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          11                            62
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       59      7     17
  AMP PEAK 17(6Q25.1) WILD-TYPE    165    143    128
D17V7, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          59                           165
  CLUS_2                           7                           143
  CLUS_3                          17                           128
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       17      6     60
  AMP PEAK 17(6Q25.1) WILD-TYPE    130    126    180
D17V8, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                           6                           126
  CLUS_3                          60                           180
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       54     13     16
  AMP PEAK 17(6Q25.1) WILD-TYPE    151    146    125
D17V9, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          54                           151
  CLUS_2                          13                           146
  CLUS_3                          16                           125
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED        2     17     64
  AMP PEAK 17(6Q25.1) WILD-TYPE      6    199    217
D17V10, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          17                           199
  CLUS_3                          64                           217
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       46     12     14
  AMP PEAK 17(6Q25.1) WILD-TYPE    129    105     76
D17V11, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          46                           129
  CLUS_2                          12                           105
  CLUS_3                          14                            76
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED        7     50     15
  AMP PEAK 17(6Q25.1) WILD-TYPE     23    148    139
D17V12, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          50                           148
  CLUS_3                          15                           139

Clustering(18) Variable = AMP PEAK 18(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(7Q22.1) MUTATED        2      5      2      1
  AMP PEAK 18(7Q22.1) WILD-TYPE     12     12     10      9
D18V1, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                            12
  CLUS_3                           2                            10
  CLUS_4                           1                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED        3      3      4
  AMP PEAK 18(7Q22.1) WILD-TYPE     16     16     11
D18V2, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           3                            16
  CLUS_2                           3                            16
  CLUS_3                           4                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(7Q22.1) MUTATED       13     26     45      4      2
  AMP PEAK 18(7Q22.1) WILD-TYPE    292     22    109      8      3
D18V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       37     10     21
  AMP PEAK 18(7Q22.1) WILD-TYPE    115     84    143
D18V4, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          37                           115
  CLUS_2                          10                            84
  CLUS_3                          21                           143
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(7Q22.1) MUTATED        4      8      3      1      5      4
  AMP PEAK 18(7Q22.1) WILD-TYPE     37     29     36     11     36     20
D18V5, multiclass
D18V6, binary
                               cls
clus                              0   1
  AMP PEAK 18(7Q22.1) MUTATED    15  10
  AMP PEAK 18(7Q22.1) WILD-TYPE 106  63
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 18(7Q22.1) MUTATED     15   10
  AMP PEAK 18(7Q22.1) WILD-TYPE  106   63
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          15                           106
  CLUS_2                          10                            63
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       58     16     14
  AMP PEAK 18(7Q22.1) WILD-TYPE    166    134    131
D18V7, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          58                           166
  CLUS_2                          16                           134
  CLUS_3                          14                           131
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       16     14     58
  AMP PEAK 18(7Q22.1) WILD-TYPE    131    118    182
D18V8, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          16                           131
  CLUS_2                          14                           118
  CLUS_3                          58                           182
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       49     15     22
  AMP PEAK 18(7Q22.1) WILD-TYPE    156    144    119
D18V9, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          49                           156
  CLUS_2                          15                           144
  CLUS_3                          22                           119
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED        2     23     61
  AMP PEAK 18(7Q22.1) WILD-TYPE      6    193    220
D18V10, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          23                           193
  CLUS_3                          61                           220
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       39     12     16
  AMP PEAK 18(7Q22.1) WILD-TYPE    136    105     74
D18V11, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          39                           136
  CLUS_2                          12                           105
  CLUS_3                          16                            74
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED        7     41     19
  AMP PEAK 18(7Q22.1) WILD-TYPE     23    157    135
D18V12, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          41                           157
  CLUS_3                          19                           135

Clustering(19) Variable = AMP PEAK 19(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED        1      8      2      0
  AMP PEAK 19(8P11.21) WILD-TYPE     13      9     10     10
D19V1, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            8                              9
  CLUS_3                            2                             10
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED        1      3      7
  AMP PEAK 19(8P11.21) WILD-TYPE     18     16      8
D19V2, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            3                             16
  CLUS_3                            7                              8
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(8P11.21) MUTATED       39     25     78     12      2
  AMP PEAK 19(8P11.21) WILD-TYPE    266     23     76      0      3
D19V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       62     29     41
  AMP PEAK 19(8P11.21) WILD-TYPE     90     65    123
D19V4, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           62                             90
  CLUS_2                           29                             65
  CLUS_3                           41                            123
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(8P11.21) MUTATED        8     12      5      2      2     11
  AMP PEAK 19(8P11.21) WILD-TYPE     33     25     34     10     39     13
D19V5, multiclass
D19V6, binary
                                cls
clus                              0  1
  AMP PEAK 19(8P11.21) MUTATED   24 16
  AMP PEAK 19(8P11.21) WILD-TYPE 97 57
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(8P11.21) MUTATED     24   16
  AMP PEAK 19(8P11.21) WILD-TYPE   97   57
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           24                             97
  CLUS_2                           16                             57
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       94     29     33
  AMP PEAK 19(8P11.21) WILD-TYPE    130    121    112
D19V7, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           94                            130
  CLUS_2                           29                            121
  CLUS_3                           33                            112
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       34     23     99
  AMP PEAK 19(8P11.21) WILD-TYPE    113    109    141
D19V8, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           34                            113
  CLUS_2                           23                            109
  CLUS_3                           99                            141
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       82     33     35
  AMP PEAK 19(8P11.21) WILD-TYPE    123    126    106
D19V9, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           82                            123
  CLUS_2                           33                            126
  CLUS_3                           35                            106
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED        3     45    102
  AMP PEAK 19(8P11.21) WILD-TYPE      5    171    179
D19V10, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                           45                            171
  CLUS_3                          102                            179
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       71     29     25
  AMP PEAK 19(8P11.21) WILD-TYPE    104     88     65
D19V11, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           71                            104
  CLUS_2                           29                             88
  CLUS_3                           25                             65
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       11     76     38
  AMP PEAK 19(8P11.21) WILD-TYPE     19    122    116
D19V12, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                           76                            122
  CLUS_3                           38                            116

Clustering(20) Variable = AMP PEAK 20(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED        1      8      3      0
  AMP PEAK 20(8Q24.21) WILD-TYPE     13      9      9     10
D20V1, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            8                              9
  CLUS_3                            3                              9
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED        2      3      7
  AMP PEAK 20(8Q24.21) WILD-TYPE     17     16      8
D20V2, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            3                             16
  CLUS_3                            7                              8
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8Q24.21) MUTATED       46     27    114     12      3
  AMP PEAK 20(8Q24.21) WILD-TYPE    259     21     40      0      2
D20V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       89     38     47
  AMP PEAK 20(8Q24.21) WILD-TYPE     63     56    117
D20V4, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           89                             63
  CLUS_2                           38                             56
  CLUS_3                           47                            117
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(8Q24.21) MUTATED       12     14      8      2      2     14
  AMP PEAK 20(8Q24.21) WILD-TYPE     29     23     31     10     39     10
D20V5, multiclass
D20V6, binary
                                cls
clus                              0  1
  AMP PEAK 20(8Q24.21) MUTATED   30 22
  AMP PEAK 20(8Q24.21) WILD-TYPE 91 51
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(8Q24.21) MUTATED     30   22
  AMP PEAK 20(8Q24.21) WILD-TYPE   91   51
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           30                             91
  CLUS_2                           22                             51
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED      133     30     38
  AMP PEAK 20(8Q24.21) WILD-TYPE     91    120    107
D20V7, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                          133                             91
  CLUS_2                           30                            120
  CLUS_3                           38                            107
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       39     25    137
  AMP PEAK 20(8Q24.21) WILD-TYPE    108    107    103
D20V8, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           39                            108
  CLUS_2                           25                            107
  CLUS_3                          137                            103
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED      117     38     38
  AMP PEAK 20(8Q24.21) WILD-TYPE     88    121    103
D20V9, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                          117                             88
  CLUS_2                           38                            121
  CLUS_3                           38                            103
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED        5     50    138
  AMP PEAK 20(8Q24.21) WILD-TYPE      3    166    143
D20V10, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                           50                            166
  CLUS_3                          138                            143
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       93     32     36
  AMP PEAK 20(8Q24.21) WILD-TYPE     82     85     54
D20V11, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           93                             82
  CLUS_2                           32                             85
  CLUS_3                           36                             54
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       16    103     42
  AMP PEAK 20(8Q24.21) WILD-TYPE     14     95    112
D20V12, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                          103                             95
  CLUS_3                           42                            112

Clustering(21) Variable = AMP PEAK 21(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED        1      9      2      0
  AMP PEAK 21(8Q24.21) WILD-TYPE     13      8     10     10
D21V1, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            9                              8
  CLUS_3                            2                             10
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED        1      3      8
  AMP PEAK 21(8Q24.21) WILD-TYPE     18     16      7
D21V2, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            3                             16
  CLUS_3                            8                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8Q24.21) MUTATED       49     28    116     12      3
  AMP PEAK 21(8Q24.21) WILD-TYPE    256     20     38      0      2
D21V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       89     37     52
  AMP PEAK 21(8Q24.21) WILD-TYPE     63     57    112
D21V4, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           89                             63
  CLUS_2                           37                             57
  CLUS_3                           52                            112
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(8Q24.21) MUTATED       12     17      7      2      2     16
  AMP PEAK 21(8Q24.21) WILD-TYPE     29     20     32     10     39      8
D21V5, multiclass
D21V6, binary
                                cls
clus                              0  1
  AMP PEAK 21(8Q24.21) MUTATED   30 26
  AMP PEAK 21(8Q24.21) WILD-TYPE 91 47
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(8Q24.21) MUTATED     30   26
  AMP PEAK 21(8Q24.21) WILD-TYPE   91   47
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           30                             91
  CLUS_2                           26                             47
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED      135     33     39
  AMP PEAK 21(8Q24.21) WILD-TYPE     89    117    106
D21V7, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                          135                             89
  CLUS_2                           33                            117
  CLUS_3                           39                            106
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       41     26    140
  AMP PEAK 21(8Q24.21) WILD-TYPE    106    106    100
D21V8, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           41                            106
  CLUS_2                           26                            106
  CLUS_3                          140                            100
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED      122     40     38
  AMP PEAK 21(8Q24.21) WILD-TYPE     83    119    103
D21V9, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                          122                             83
  CLUS_2                           40                            119
  CLUS_3                           38                            103
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED        5     54    141
  AMP PEAK 21(8Q24.21) WILD-TYPE      3    162    140
D21V10, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                           54                            162
  CLUS_3                          141                            140
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       97     35     36
  AMP PEAK 21(8Q24.21) WILD-TYPE     78     82     54
D21V11, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           97                             78
  CLUS_2                           35                             82
  CLUS_3                           36                             54
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       16    106     46
  AMP PEAK 21(8Q24.21) WILD-TYPE     14     92    108
D21V12, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                          106                             92
  CLUS_3                           46                            108

Clustering(22) Variable = AMP PEAK 22(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED        3      4      0      0
  AMP PEAK 22(9P24.2) WILD-TYPE     11     13     12     10
D22V1, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                            13
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED        3      0      4
  AMP PEAK 22(9P24.2) WILD-TYPE     16     19     11
D22V2, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           3                            16
  CLUS_2                           0                            19
  CLUS_3                           4                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(9P24.2) MUTATED        5      3     55      0      0
  AMP PEAK 22(9P24.2) WILD-TYPE    300     45     99     12      5
D22V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       39      8      5
  AMP PEAK 22(9P24.2) WILD-TYPE    113     86    159
D22V4, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          39                           113
  CLUS_2                           8                            86
  CLUS_3                           5                           159
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(9P24.2) MUTATED        5      9      0      0      1      1
  AMP PEAK 22(9P24.2) WILD-TYPE     36     28     39     12     40     23
D22V5, multiclass
D22V6, binary
                               cls
clus                              0   1
  AMP PEAK 22(9P24.2) MUTATED     4  12
  AMP PEAK 22(9P24.2) WILD-TYPE 117  61
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 22(9P24.2) MUTATED      4   12
  AMP PEAK 22(9P24.2) WILD-TYPE  117   61
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                          12                            61
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       55      3      5
  AMP PEAK 22(9P24.2) WILD-TYPE    169    147    140
D22V7, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          55                           169
  CLUS_2                           3                           147
  CLUS_3                           5                           140
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED        4      4     55
  AMP PEAK 22(9P24.2) WILD-TYPE    143    128    185
D22V8, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           4                           143
  CLUS_2                           4                           128
  CLUS_3                          55                           185
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       50      2      9
  AMP PEAK 22(9P24.2) WILD-TYPE    155    157    132
D22V9, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          50                           155
  CLUS_2                           2                           157
  CLUS_3                           9                           132
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED        3      8     50
  AMP PEAK 22(9P24.2) WILD-TYPE      5    208    231
D22V10, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           8                           208
  CLUS_3                          50                           231
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       33      5     11
  AMP PEAK 22(9P24.2) WILD-TYPE    142    112     79
D22V11, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          33                           142
  CLUS_2                           5                           112
  CLUS_3                          11                            79
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED        2     39      8
  AMP PEAK 22(9P24.2) WILD-TYPE     28    159    146
D22V12, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                          39                           159
  CLUS_3                           8                           146

Clustering(23) Variable = AMP PEAK 23(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED        0      4      1      1
  AMP PEAK 23(9Q34.3) WILD-TYPE     14     13     11      9
D23V1, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            13
  CLUS_3                           1                            11
  CLUS_4                           1                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED        1      1      4
  AMP PEAK 23(9Q34.3) WILD-TYPE     18     18     11
D23V2, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           1                            18
  CLUS_3                           4                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(9Q34.3) MUTATED        3      1     33      0      0
  AMP PEAK 23(9Q34.3) WILD-TYPE    302     47    121     12      5
D23V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       19      7      2
  AMP PEAK 23(9Q34.3) WILD-TYPE    133     87    162
D23V4, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          19                           133
  CLUS_2                           7                            87
  CLUS_3                           2                           162
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(9Q34.3) MUTATED        2      4      0      0      2      2
  AMP PEAK 23(9Q34.3) WILD-TYPE     39     33     39     12     39     22
D23V5, multiclass
D23V6, binary
                               cls
clus                              0   1
  AMP PEAK 23(9Q34.3) MUTATED     5   5
  AMP PEAK 23(9Q34.3) WILD-TYPE 116  68
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 23(9Q34.3) MUTATED      5    5
  AMP PEAK 23(9Q34.3) WILD-TYPE  116   68
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                           5                            68
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       32      3      1
  AMP PEAK 23(9Q34.3) WILD-TYPE    192    147    144
D23V7, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          32                           192
  CLUS_2                           3                           147
  CLUS_3                           1                           144
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED        2      2     32
  AMP PEAK 23(9Q34.3) WILD-TYPE    145    130    208
D23V8, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           2                           145
  CLUS_2                           2                           130
  CLUS_3                          32                           208
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       24      3      4
  AMP PEAK 23(9Q34.3) WILD-TYPE    181    156    137
D23V9, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          24                           181
  CLUS_2                           3                           156
  CLUS_3                           4                           137
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED        1      3     27
  AMP PEAK 23(9Q34.3) WILD-TYPE      7    213    254
D23V10, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           3                           213
  CLUS_3                          27                           254
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       17      2      8
  AMP PEAK 23(9Q34.3) WILD-TYPE    158    115     82
D23V11, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          17                           158
  CLUS_2                           2                           115
  CLUS_3                           8                            82
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED        2     20      5
  AMP PEAK 23(9Q34.3) WILD-TYPE     28    178    149
D23V12, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                          20                           178
  CLUS_3                           5                           149

Clustering(24) Variable = AMP PEAK 24(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED        2      7      8      2
  AMP PEAK 24(10Q22.2) WILD-TYPE     12     10      4      8
D24V1, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            7                             10
  CLUS_3                            8                              4
  CLUS_4                            2                              8
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED        3      9      7
  AMP PEAK 24(10Q22.2) WILD-TYPE     16     10      8
D24V2, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            3                             16
  CLUS_2                            9                             10
  CLUS_3                            7                              8
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(10Q22.2) MUTATED       47     25     60      6      2
  AMP PEAK 24(10Q22.2) WILD-TYPE    258     23     94      6      3
D24V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       45     21     40
  AMP PEAK 24(10Q22.2) WILD-TYPE    107     73    124
D24V4, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           45                            107
  CLUS_2                           21                             73
  CLUS_3                           40                            124
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(10Q22.2) MUTATED        9      9     10      2     14     11
  AMP PEAK 24(10Q22.2) WILD-TYPE     32     28     29     10     27     13
D24V5, multiclass
D24V6, binary
                                cls
clus                              0  1
  AMP PEAK 24(10Q22.2) MUTATED   37 18
  AMP PEAK 24(10Q22.2) WILD-TYPE 84 55
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(10Q22.2) MUTATED     37   18
  AMP PEAK 24(10Q22.2) WILD-TYPE   84   55
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           37                             84
  CLUS_2                           18                             55
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       71     29     38
  AMP PEAK 24(10Q22.2) WILD-TYPE    153    121    107
D24V7, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           71                            153
  CLUS_2                           29                            121
  CLUS_3                           38                            107
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       38     28     72
  AMP PEAK 24(10Q22.2) WILD-TYPE    109    104    168
D24V8, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           38                            109
  CLUS_2                           28                            104
  CLUS_3                           72                            168
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       58     43     33
  AMP PEAK 24(10Q22.2) WILD-TYPE    147    116    108
D24V9, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           58                            147
  CLUS_2                           43                            116
  CLUS_3                           33                            108
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED        1     61     72
  AMP PEAK 24(10Q22.2) WILD-TYPE      7    155    209
D24V10, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                           61                            155
  CLUS_3                           72                            209
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       46     33     15
  AMP PEAK 24(10Q22.2) WILD-TYPE    129     84     75
D24V11, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           46                            129
  CLUS_2                           33                             84
  CLUS_3                           15                             75
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED        2     51     41
  AMP PEAK 24(10Q22.2) WILD-TYPE     28    147    113
D24V12, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           51                            147
  CLUS_3                           41                            113

Clustering(25) Variable = AMP PEAK 25(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED        0      6      0      0
  AMP PEAK 25(11P11.2) WILD-TYPE     14     11     12     10
D25V1, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED        0      1      5
  AMP PEAK 25(11P11.2) WILD-TYPE     19     18     10
D25V2, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            1                             18
  CLUS_3                            5                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(11P11.2) MUTATED        1      7     40      1      0
  AMP PEAK 25(11P11.2) WILD-TYPE    304     41    114     11      5
D25V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       25     12      4
  AMP PEAK 25(11P11.2) WILD-TYPE    127     82    160
D25V4, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           25                            127
  CLUS_2                           12                             82
  CLUS_3                            4                            160
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(11P11.2) MUTATED        4      4      1      0      1      6
  AMP PEAK 25(11P11.2) WILD-TYPE     37     33     38     12     40     18
D25V5, multiclass
D25V6, binary
                                cls
clus                               0   1
  AMP PEAK 25(11P11.2) MUTATED    10   6
  AMP PEAK 25(11P11.2) WILD-TYPE 111  67
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(11P11.2) MUTATED     10    6
  AMP PEAK 25(11P11.2) WILD-TYPE  111   67
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                            6                             67
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       40      3      6
  AMP PEAK 25(11P11.2) WILD-TYPE    184    147    139
D25V7, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           40                            184
  CLUS_2                            3                            147
  CLUS_3                            6                            139
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED        6      3     40
  AMP PEAK 25(11P11.2) WILD-TYPE    141    129    200
D25V8, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            6                            141
  CLUS_2                            3                            129
  CLUS_3                           40                            200
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       38      6      3
  AMP PEAK 25(11P11.2) WILD-TYPE    167    153    138
D25V9, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           38                            167
  CLUS_2                            6                            153
  CLUS_3                            3                            138
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED        1      7     39
  AMP PEAK 25(11P11.2) WILD-TYPE      7    209    242
D25V10, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            7                            209
  CLUS_3                           39                            242
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       23      5      9
  AMP PEAK 25(11P11.2) WILD-TYPE    152    112     81
D25V11, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           23                            152
  CLUS_2                            5                            112
  CLUS_3                            9                             81
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED        1     31      5
  AMP PEAK 25(11P11.2) WILD-TYPE     29    167    149
D25V12, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                           31                            167
  CLUS_3                            5                            149

Clustering(26) Variable = AMP PEAK 26(11Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED        0      6      0      0
  AMP PEAK 26(11Q13.2) WILD-TYPE     14     11     12     10
D26V1, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED        0      1      5
  AMP PEAK 26(11Q13.2) WILD-TYPE     19     18     10
D26V2, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            1                             18
  CLUS_3                            5                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(11Q13.2) MUTATED        6     10     54      1      0
  AMP PEAK 26(11Q13.2) WILD-TYPE    299     38    100     11      5
D26V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       36     12     12
  AMP PEAK 26(11Q13.2) WILD-TYPE    116     82    152
D26V4, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           36                            116
  CLUS_2                           12                             82
  CLUS_3                           12                            152
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(11Q13.2) MUTATED        4      6      3      1      1      6
  AMP PEAK 26(11Q13.2) WILD-TYPE     37     31     36     11     40     18
D26V5, multiclass
D26V6, binary
                                cls
clus                               0   1
  AMP PEAK 26(11Q13.2) MUTATED    15   6
  AMP PEAK 26(11Q13.2) WILD-TYPE 106  67
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(11Q13.2) MUTATED     15    6
  AMP PEAK 26(11Q13.2) WILD-TYPE  106   67
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                            6                             67
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       50      6     14
  AMP PEAK 26(11Q13.2) WILD-TYPE    174    144    131
D26V7, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           50                            174
  CLUS_2                            6                            144
  CLUS_3                           14                            131
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       15      5     50
  AMP PEAK 26(11Q13.2) WILD-TYPE    132    127    190
D26V8, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           15                            132
  CLUS_2                            5                            127
  CLUS_3                           50                            190
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       43     15      9
  AMP PEAK 26(11Q13.2) WILD-TYPE    162    144    132
D26V9, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           43                            162
  CLUS_2                           15                            144
  CLUS_3                            9                            132
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED        4     19     44
  AMP PEAK 26(11Q13.2) WILD-TYPE      4    197    237
D26V10, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                           19                            197
  CLUS_3                           44                            237
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       33     13      9
  AMP PEAK 26(11Q13.2) WILD-TYPE    142    104     81
D26V11, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           33                            142
  CLUS_2                           13                            104
  CLUS_3                            9                             81
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED        6     34     15
  AMP PEAK 26(11Q13.2) WILD-TYPE     24    164    139
D26V12, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           34                            164
  CLUS_3                           15                            139

Clustering(27) Variable = AMP PEAK 27(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED        1      3      0      0
  AMP PEAK 27(11Q14.1) WILD-TYPE     13     14     12     10
D27V1, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED        1      1      2
  AMP PEAK 27(11Q14.1) WILD-TYPE     18     18     13
D27V2, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            1                             18
  CLUS_3                            2                             13
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11Q14.1) MUTATED        4      7     44      1      0
  AMP PEAK 27(11Q14.1) WILD-TYPE    301     41    110     11      5
D27V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       29      9      9
  AMP PEAK 27(11Q14.1) WILD-TYPE    123     85    155
D27V4, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           29                            123
  CLUS_2                            9                             85
  CLUS_3                            9                            155
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(11Q14.1) MUTATED        3      3      3      1      1      4
  AMP PEAK 27(11Q14.1) WILD-TYPE     38     34     36     11     40     20
D27V5, multiclass
D27V6, binary
                                cls
clus                               0   1
  AMP PEAK 27(11Q14.1) MUTATED    11   4
  AMP PEAK 27(11Q14.1) WILD-TYPE 110  69
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(11Q14.1) MUTATED     11    4
  AMP PEAK 27(11Q14.1) WILD-TYPE  110   69
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           11                            110
  CLUS_2                            4                             69
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       41      6      8
  AMP PEAK 27(11Q14.1) WILD-TYPE    183    144    137
D27V7, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           41                            183
  CLUS_2                            6                            144
  CLUS_3                            8                            137
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED        9      5     41
  AMP PEAK 27(11Q14.1) WILD-TYPE    138    127    199
D27V8, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            9                            138
  CLUS_2                            5                            127
  CLUS_3                           41                            199
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       37     12      7
  AMP PEAK 27(11Q14.1) WILD-TYPE    168    147    134
D27V9, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           37                            168
  CLUS_2                           12                            147
  CLUS_3                            7                            134
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED        5     12     39
  AMP PEAK 27(11Q14.1) WILD-TYPE      3    204    242
D27V10, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                           12                            204
  CLUS_3                           39                            242
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       28     10      7
  AMP PEAK 27(11Q14.1) WILD-TYPE    147    107     83
D27V11, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           28                            147
  CLUS_2                           10                            107
  CLUS_3                            7                             83
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED        2     31     12
  AMP PEAK 27(11Q14.1) WILD-TYPE     28    167    142
D27V12, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           31                            167
  CLUS_3                           12                            142

Clustering(28) Variable = AMP PEAK 28(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED        1      3      3      0
  AMP PEAK 28(12P12.1) WILD-TYPE     13     14      9     10
D28V1, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            3                              9
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED        2      2      3
  AMP PEAK 28(12P12.1) WILD-TYPE     17     17     12
D28V2, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            2                             17
  CLUS_3                            3                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(12P12.1) MUTATED       14     14     54      2      3
  AMP PEAK 28(12P12.1) WILD-TYPE    291     34    100     10      2
D28V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       48     13     10
  AMP PEAK 28(12P12.1) WILD-TYPE    104     81    154
D28V4, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           48                            104
  CLUS_2                           13                             81
  CLUS_3                           10                            154
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(12P12.1) MUTATED        5      7      5      0      4      5
  AMP PEAK 28(12P12.1) WILD-TYPE     36     30     34     12     37     19
D28V5, multiclass
D28V6, binary
                                cls
clus                               0   1
  AMP PEAK 28(12P12.1) MUTATED    15  11
  AMP PEAK 28(12P12.1) WILD-TYPE 106  62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(12P12.1) MUTATED     15   11
  AMP PEAK 28(12P12.1) WILD-TYPE  106   62
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                           11                             62
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       63     12     11
  AMP PEAK 28(12P12.1) WILD-TYPE    161    138    134
D28V7, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           63                            161
  CLUS_2                           12                            138
  CLUS_3                           11                            134
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       13      9     64
  AMP PEAK 28(12P12.1) WILD-TYPE    134    123    176
D28V8, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           13                            134
  CLUS_2                            9                            123
  CLUS_3                           64                            176
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       59     14     13
  AMP PEAK 28(12P12.1) WILD-TYPE    146    145    128
D28V9, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           59                            146
  CLUS_2                           14                            145
  CLUS_3                           13                            128
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED        0     22     64
  AMP PEAK 28(12P12.1) WILD-TYPE      8    194    217
D28V10, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                           22                            194
  CLUS_3                           64                            217
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       44      8     15
  AMP PEAK 28(12P12.1) WILD-TYPE    131    109     75
D28V11, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           44                            131
  CLUS_2                            8                            109
  CLUS_3                           15                             75
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED        7     50     10
  AMP PEAK 28(12P12.1) WILD-TYPE     23    148    144
D28V12, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           50                            148
  CLUS_3                           10                            144

Clustering(29) Variable = AMP PEAK 29(12Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED        2      4      3      0
  AMP PEAK 29(12Q13.11) WILD-TYPE     12     13      9     10
D29V1, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                              13
  CLUS_3                             3                               9
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED        3      2      4
  AMP PEAK 29(12Q13.11) WILD-TYPE     16     17     11
D29V2, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             3                              16
  CLUS_2                             2                              17
  CLUS_3                             4                              11
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(12Q13.11) MUTATED       11     15     55      1      3
  AMP PEAK 29(12Q13.11) WILD-TYPE    294     33     99     11      2
D29V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       46     16      7
  AMP PEAK 29(12Q13.11) WILD-TYPE    106     78    157
D29V4, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            46                             106
  CLUS_2                            16                              78
  CLUS_3                             7                             157
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(12Q13.11) MUTATED        5      7      4      0      3      3
  AMP PEAK 29(12Q13.11) WILD-TYPE     36     30     35     12     38     21
D29V5, multiclass
D29V6, binary
                                 cls
clus                                0   1
  AMP PEAK 29(12Q13.11) MUTATED    11  11
  AMP PEAK 29(12Q13.11) WILD-TYPE 110  62
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 29(12Q13.11) MUTATED     11   11
  AMP PEAK 29(12Q13.11) WILD-TYPE  110   62
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            11                             110
  CLUS_2                            11                              62
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       64      9     10
  AMP PEAK 29(12Q13.11) WILD-TYPE    160    141    135
D29V7, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            64                             160
  CLUS_2                             9                             141
  CLUS_3                            10                             135
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       11      7     65
  AMP PEAK 29(12Q13.11) WILD-TYPE    136    125    175
D29V8, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            11                             136
  CLUS_2                             7                             125
  CLUS_3                            65                             175
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       59     13     12
  AMP PEAK 29(12Q13.11) WILD-TYPE    146    146    129
D29V9, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            59                             146
  CLUS_2                            13                             146
  CLUS_3                            12                             129
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED        1     19     64
  AMP PEAK 29(12Q13.11) WILD-TYPE      7    197    217
D29V10, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                            19                             197
  CLUS_3                            64                             217
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       43      6     15
  AMP PEAK 29(12Q13.11) WILD-TYPE    132    111     75
D29V11, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            43                             132
  CLUS_2                             6                             111
  CLUS_3                            15                              75
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED        7     48      9
  AMP PEAK 29(12Q13.11) WILD-TYPE     23    150    145
D29V12, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             7                              23
  CLUS_2                            48                             150
  CLUS_3                             9                             145

Clustering(30) Variable = AMP PEAK 30(12Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED        2      5      4      0
  AMP PEAK 30(12Q13.2) WILD-TYPE     12     12      8     10
D30V1, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                             12
  CLUS_3                            4                              8
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED        4      2      5
  AMP PEAK 30(12Q13.2) WILD-TYPE     15     17     10
D30V2, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            4                             15
  CLUS_2                            2                             17
  CLUS_3                            5                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12Q13.2) MUTATED       14     15     65      1      3
  AMP PEAK 30(12Q13.2) WILD-TYPE    291     33     89     11      2
D30V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       52     15     13
  AMP PEAK 30(12Q13.2) WILD-TYPE    100     79    151
D30V4, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           52                            100
  CLUS_2                           15                             79
  CLUS_3                           13                            151
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(12Q13.2) MUTATED        6      8      4      0      3      4
  AMP PEAK 30(12Q13.2) WILD-TYPE     35     29     35     12     38     20
D30V5, multiclass
D30V6, binary
                                cls
clus                               0   1
  AMP PEAK 30(12Q13.2) MUTATED    13  12
  AMP PEAK 30(12Q13.2) WILD-TYPE 108  61
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 30(12Q13.2) MUTATED     13   12
  AMP PEAK 30(12Q13.2) WILD-TYPE  108   61
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           12                             61
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       73      9     14
  AMP PEAK 30(12Q13.2) WILD-TYPE    151    141    131
D30V7, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           73                            151
  CLUS_2                            9                            141
  CLUS_3                           14                            131
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       15      7     74
  AMP PEAK 30(12Q13.2) WILD-TYPE    132    125    166
D30V8, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           15                            132
  CLUS_2                            7                            125
  CLUS_3                           74                            166
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       66     16     12
  AMP PEAK 30(12Q13.2) WILD-TYPE    139    143    129
D30V9, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           66                            139
  CLUS_2                           16                            143
  CLUS_3                           12                            129
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED        2     21     71
  AMP PEAK 30(12Q13.2) WILD-TYPE      6    195    210
D30V10, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                           21                            195
  CLUS_3                           71                            210
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       52     10     13
  AMP PEAK 30(12Q13.2) WILD-TYPE    123    107     77
D30V11, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           52                            123
  CLUS_2                           10                            107
  CLUS_3                           13                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED        6     56     13
  AMP PEAK 30(12Q13.2) WILD-TYPE     24    142    141
D30V12, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           56                            142
  CLUS_3                           13                            141

Clustering(31) Variable = AMP PEAK 31(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED        1      2      0      0
  AMP PEAK 31(13Q34) WILD-TYPE     13     15     12     10
D31V1, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                           15
  CLUS_3                          0                           12
  CLUS_4                          0                           10
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED        1      0      2
  AMP PEAK 31(13Q34) WILD-TYPE     18     19     13
D31V2, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          1                           18
  CLUS_2                          0                           19
  CLUS_3                          2                           13
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(13Q34) MUTATED        4      0     50      1      1
  AMP PEAK 31(13Q34) WILD-TYPE    301     48    104     11      4
D31V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       36     11      4
  AMP PEAK 31(13Q34) WILD-TYPE    116     83    160
D31V4, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         36                          116
  CLUS_2                         11                           83
  CLUS_3                          4                          160
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(13Q34) MUTATED        2      4      0      0      1      2
  AMP PEAK 31(13Q34) WILD-TYPE     39     33     39     12     40     22
D31V5, multiclass
D31V6, binary
                              cls
clus                             0   1
  AMP PEAK 31(13Q34) MUTATED     3   6
  AMP PEAK 31(13Q34) WILD-TYPE 118  67
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 31(13Q34) MUTATED      3    6
  AMP PEAK 31(13Q34) WILD-TYPE  118   67
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          3                          118
  CLUS_2                          6                           67
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       50      3      3
  AMP PEAK 31(13Q34) WILD-TYPE    174    147    142
D31V7, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         50                          174
  CLUS_2                          3                          147
  CLUS_3                          3                          142
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED        2      2     52
  AMP PEAK 31(13Q34) WILD-TYPE    145    130    188
D31V8, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          2                          145
  CLUS_2                          2                          130
  CLUS_3                         52                          188
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       48      4      3
  AMP PEAK 31(13Q34) WILD-TYPE    157    155    138
D31V9, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         48                          157
  CLUS_2                          4                          155
  CLUS_3                          3                          138
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED        0      6     49
  AMP PEAK 31(13Q34) WILD-TYPE      8    210    232
D31V10, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          0                            8
  CLUS_2                          6                          210
  CLUS_3                         49                          232
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       34      3     12
  AMP PEAK 31(13Q34) WILD-TYPE    141    114     78
D31V11, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         34                          141
  CLUS_2                          3                          114
  CLUS_3                         12                           78
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED        2     43      4
  AMP PEAK 31(13Q34) WILD-TYPE     28    155    150
D31V12, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          2                           28
  CLUS_2                         43                          155
  CLUS_3                          4                          150

Clustering(32) Variable = AMP PEAK 32(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED        1      6      1      0
  AMP PEAK 32(14Q24.3) WILD-TYPE     13     11     11     10
D32V1, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED        1      2      5
  AMP PEAK 32(14Q24.3) WILD-TYPE     18     17     10
D32V2, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            2                             17
  CLUS_3                            5                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(14Q24.3) MUTATED        4      7     49      2      0
  AMP PEAK 32(14Q24.3) WILD-TYPE    301     41    105     10      5
D32V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       33     11      8
  AMP PEAK 32(14Q24.3) WILD-TYPE    119     83    156
D32V4, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           33                            119
  CLUS_2                           11                             83
  CLUS_3                            8                            156
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(14Q24.3) MUTATED        5      5      1      1      0      3
  AMP PEAK 32(14Q24.3) WILD-TYPE     36     32     38     11     41     21
D32V5, multiclass
D32V6, binary
                                cls
clus                               0   1
  AMP PEAK 32(14Q24.3) MUTATED     7   8
  AMP PEAK 32(14Q24.3) WILD-TYPE 114  65
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 32(14Q24.3) MUTATED      7    8
  AMP PEAK 32(14Q24.3) WILD-TYPE  114   65
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            8                             65
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       53      1      7
  AMP PEAK 32(14Q24.3) WILD-TYPE    171    149    138
D32V7, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           53                            171
  CLUS_2                            1                            149
  CLUS_3                            7                            138
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED        7      0     54
  AMP PEAK 32(14Q24.3) WILD-TYPE    140    132    186
D32V8, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            7                            140
  CLUS_2                            0                            132
  CLUS_3                           54                            186
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       44      9      6
  AMP PEAK 32(14Q24.3) WILD-TYPE    161    150    135
D32V9, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           44                            161
  CLUS_2                            9                            150
  CLUS_3                            6                            135
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED        1     10     48
  AMP PEAK 32(14Q24.3) WILD-TYPE      7    206    233
D32V10, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                           10                            206
  CLUS_3                           48                            233
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       29      9     12
  AMP PEAK 32(14Q24.3) WILD-TYPE    146    108     78
D32V11, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           29                            146
  CLUS_2                            9                            108
  CLUS_3                           12                             78
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED        1     39     10
  AMP PEAK 32(14Q24.3) WILD-TYPE     29    159    144
D32V12, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                           39                            159
  CLUS_3                           10                            144

Clustering(33) Variable = AMP PEAK 33(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(15Q26.3) MUTATED        1      1      0      0
  AMP PEAK 33(15Q26.3) WILD-TYPE     13     16     12     10
D33V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 33(15Q26.3) MUTATED"
clus
  AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0GA 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05H 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BK-A0C9 
"AMP PEAK 33(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED        1      0      1
  AMP PEAK 33(15Q26.3) WILD-TYPE     18     19     14
D33V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 33(15Q26.3) MUTATED"
clus
  AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0GA 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05H 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BK-A0C9 
"AMP PEAK 33(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(15Q26.3) MUTATED        4      4     29      0      0
  AMP PEAK 33(15Q26.3) WILD-TYPE    301     44    125     12      5
D33V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED       19      7      6
  AMP PEAK 33(15Q26.3) WILD-TYPE    133     87    158
D33V4, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                           19                            133
  CLUS_2                            7                             87
  CLUS_3                            6                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(15Q26.3) MUTATED        4      1      0      0      1      2
  AMP PEAK 33(15Q26.3) WILD-TYPE     37     36     39     12     40     22
D33V5, multiclass
D33V6, binary
                                cls
clus                               0   1
  AMP PEAK 33(15Q26.3) MUTATED     3   5
  AMP PEAK 33(15Q26.3) WILD-TYPE 118  68
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 33(15Q26.3) MUTATED      3    5
  AMP PEAK 33(15Q26.3) WILD-TYPE  118   68
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            3                            118
  CLUS_2                            5                             68
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED       31      4      2
  AMP PEAK 33(15Q26.3) WILD-TYPE    193    146    143
D33V7, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                           31                            193
  CLUS_2                            4                            146
  CLUS_3                            2                            143
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED        2      3     32
  AMP PEAK 33(15Q26.3) WILD-TYPE    145    129    208
D33V8, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            2                            145
  CLUS_2                            3                            129
  CLUS_3                           32                            208
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED       26      2      8
  AMP PEAK 33(15Q26.3) WILD-TYPE    179    157    133
D33V9, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                           26                            179
  CLUS_2                            2                            157
  CLUS_3                            8                            133
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED        2      5     29
  AMP PEAK 33(15Q26.3) WILD-TYPE      6    211    252
D33V10, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            5                            211
  CLUS_3                           29                            252
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED       21      3      6
  AMP PEAK 33(15Q26.3) WILD-TYPE    154    114     84
D33V11, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                           21                            154
  CLUS_2                            3                            114
  CLUS_3                            6                             84
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED        1     24      5
  AMP PEAK 33(15Q26.3) WILD-TYPE     29    174    149
D33V12, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                           24                            174
  CLUS_3                            5                            149

Clustering(34) Variable = AMP PEAK 34(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(16P11.2) MUTATED        0      5      0      0
  AMP PEAK 34(16P11.2) WILD-TYPE     14     12     12     10
D34V1, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED        0      0      5
  AMP PEAK 34(16P11.2) WILD-TYPE     19     19     10
D34V2, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            0                             19
  CLUS_3                            5                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(16P11.2) MUTATED        2      6     54      1      0
  AMP PEAK 34(16P11.2) WILD-TYPE    303     42    100     11      5
D34V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED       35     11      8
  AMP PEAK 34(16P11.2) WILD-TYPE    117     83    156
D34V4, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           35                            117
  CLUS_2                           11                             83
  CLUS_3                            8                            156
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(16P11.2) MUTATED        6      6      1      0      2      5
  AMP PEAK 34(16P11.2) WILD-TYPE     35     31     38     12     39     19
D34V5, multiclass
D34V6, binary
                                cls
clus                               0   1
  AMP PEAK 34(16P11.2) MUTATED     9  11
  AMP PEAK 34(16P11.2) WILD-TYPE 112  62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 34(16P11.2) MUTATED      9   11
  AMP PEAK 34(16P11.2) WILD-TYPE  112   62
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            9                            112
  CLUS_2                           11                             62
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED       54      6      3
  AMP PEAK 34(16P11.2) WILD-TYPE    170    144    142
D34V7, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           54                            170
  CLUS_2                            6                            144
  CLUS_3                            3                            142
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED        4      4     55
  AMP PEAK 34(16P11.2) WILD-TYPE    143    128    185
D34V8, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            4                            143
  CLUS_2                            4                            128
  CLUS_3                           55                            185
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED       48      5      5
  AMP PEAK 34(16P11.2) WILD-TYPE    157    154    136
D34V9, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           48                            157
  CLUS_2                            5                            154
  CLUS_3                            5                            136
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED        2     11     45
  AMP PEAK 34(16P11.2) WILD-TYPE      6    205    236
D34V10, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                           11                            205
  CLUS_3                           45                            236
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED       31      5     12
  AMP PEAK 34(16P11.2) WILD-TYPE    144    112     78
D34V11, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           31                            144
  CLUS_2                            5                            112
  CLUS_3                           12                             78
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED        2     39      7
  AMP PEAK 34(16P11.2) WILD-TYPE     28    159    147
D34V12, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           39                            159
  CLUS_3                            7                            147

Clustering(35) Variable = AMP PEAK 35(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(17Q11.2) MUTATED        1      4      0      0
  AMP PEAK 35(17Q11.2) WILD-TYPE     13     13     12     10
D35V1, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                             13
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED        1      0      4
  AMP PEAK 35(17Q11.2) WILD-TYPE     18     19     11
D35V2, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            4                             11
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(17Q11.2) MUTATED        4      1     60      1      1
  AMP PEAK 35(17Q11.2) WILD-TYPE    301     47     94     11      4
D35V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED       47      9      3
  AMP PEAK 35(17Q11.2) WILD-TYPE    105     85    161
D35V4, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                           47                            105
  CLUS_2                            9                             85
  CLUS_3                            3                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(17Q11.2) MUTATED        5      6      0      1      0      1
  AMP PEAK 35(17Q11.2) WILD-TYPE     36     31     39     11     41     23
D35V5, multiclass
D35V6, binary
                                cls
clus                               0   1
  AMP PEAK 35(17Q11.2) MUTATED     3  10
  AMP PEAK 35(17Q11.2) WILD-TYPE 118  63
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 35(17Q11.2) MUTATED      3   10
  AMP PEAK 35(17Q11.2) WILD-TYPE  118   63
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            3                            118
  CLUS_2                           10                             63
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED       59      3      4
  AMP PEAK 35(17Q11.2) WILD-TYPE    165    147    141
D35V7, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                           59                            165
  CLUS_2                            3                            147
  CLUS_3                            4                            141
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED        3      1     62
  AMP PEAK 35(17Q11.2) WILD-TYPE    144    131    178
D35V8, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            3                            144
  CLUS_2                            1                            131
  CLUS_3                           62                            178
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED       54      2      8
  AMP PEAK 35(17Q11.2) WILD-TYPE    151    157    133
D35V9, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                           54                            151
  CLUS_2                            2                            157
  CLUS_3                            8                            133
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED        0      4     60
  AMP PEAK 35(17Q11.2) WILD-TYPE      8    212    221
D35V10, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            4                            212
  CLUS_3                           60                            221
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED       40      4     12
  AMP PEAK 35(17Q11.2) WILD-TYPE    135    113     78
D35V11, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                           40                            135
  CLUS_2                            4                            113
  CLUS_3                           12                             78
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED        2     50      4
  AMP PEAK 35(17Q11.2) WILD-TYPE     28    148    150
D35V12, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           50                            148
  CLUS_3                            4                            150

Clustering(36) Variable = AMP PEAK 36(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q12) MUTATED        0      4      1      0
  AMP PEAK 36(17Q12) WILD-TYPE     14     13     11     10
D36V1, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                           13
  CLUS_3                          1                           11
  CLUS_4                          0                           10
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED        1      0      4
  AMP PEAK 36(17Q12) WILD-TYPE     18     19     11
D36V2, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          1                           18
  CLUS_2                          0                           19
  CLUS_3                          4                           11
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(17Q12) MUTATED        6      2     61      1      1
  AMP PEAK 36(17Q12) WILD-TYPE    299     46     93     11      4
D36V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED       47     10      2
  AMP PEAK 36(17Q12) WILD-TYPE    105     84    162
D36V4, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                         47                          105
  CLUS_2                         10                           84
  CLUS_3                          2                          162
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(17Q12) MUTATED        4      5      1      1      0      6
  AMP PEAK 36(17Q12) WILD-TYPE     37     32     38     11     41     18
D36V5, multiclass
D36V6, binary
                              cls
clus                             0   1
  AMP PEAK 36(17Q12) MUTATED     9   8
  AMP PEAK 36(17Q12) WILD-TYPE 112  65
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 36(17Q12) MUTATED      9    8
  AMP PEAK 36(17Q12) WILD-TYPE  112   65
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          9                          112
  CLUS_2                          8                           65
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED       66      2      3
  AMP PEAK 36(17Q12) WILD-TYPE    158    148    142
D36V7, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                         66                          158
  CLUS_2                          2                          148
  CLUS_3                          3                          142
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED        2      2     67
  AMP PEAK 36(17Q12) WILD-TYPE    145    130    173
D36V8, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          2                          145
  CLUS_2                          2                          130
  CLUS_3                         67                          173
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED       58      3      6
  AMP PEAK 36(17Q12) WILD-TYPE    147    156    135
D36V9, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                         58                          147
  CLUS_2                          3                          156
  CLUS_3                          6                          135
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED        0      5     62
  AMP PEAK 36(17Q12) WILD-TYPE      8    211    219
D36V10, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          0                            8
  CLUS_2                          5                          211
  CLUS_3                         62                          219
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED       37      3     15
  AMP PEAK 36(17Q12) WILD-TYPE    138    114     75
D36V11, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                         37                          138
  CLUS_2                          3                          114
  CLUS_3                         15                           75
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED        0     52      3
  AMP PEAK 36(17Q12) WILD-TYPE     30    146    151
D36V12, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          0                           30
  CLUS_2                         52                          146
  CLUS_3                          3                          151

Clustering(37) Variable = AMP PEAK 37(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q25.1) MUTATED        0     10      1      0
  AMP PEAK 37(17Q25.1) WILD-TYPE     14      7     11     10
D37V1, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                           10                              7
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED        1      0     10
  AMP PEAK 37(17Q25.1) WILD-TYPE     18     19      5
D37V2, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                           10                              5
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(17Q25.1) MUTATED        5      6     87      1      1
  AMP PEAK 37(17Q25.1) WILD-TYPE    300     42     67     11      4
D37V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED       55     19      6
  AMP PEAK 37(17Q25.1) WILD-TYPE     97     75    158
D37V4, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           55                             97
  CLUS_2                           19                             75
  CLUS_3                            6                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 37(17Q25.1) MUTATED        6      9      2      1      1      7
  AMP PEAK 37(17Q25.1) WILD-TYPE     35     28     37     11     40     17
D37V5, multiclass
D37V6, binary
                                cls
clus                               0   1
  AMP PEAK 37(17Q25.1) MUTATED    14  12
  AMP PEAK 37(17Q25.1) WILD-TYPE 107  61
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 37(17Q25.1) MUTATED     14   12
  AMP PEAK 37(17Q25.1) WILD-TYPE  107   61
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           14                            107
  CLUS_2                           12                             61
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED       85      6      8
  AMP PEAK 37(17Q25.1) WILD-TYPE    139    144    137
D37V7, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           85                            139
  CLUS_2                            6                            144
  CLUS_3                            8                            137
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED        8      4     87
  AMP PEAK 37(17Q25.1) WILD-TYPE    139    128    153
D37V8, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            8                            139
  CLUS_2                            4                            128
  CLUS_3                           87                            153
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED       76      8     10
  AMP PEAK 37(17Q25.1) WILD-TYPE    129    151    131
D37V9, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           76                            129
  CLUS_2                            8                            151
  CLUS_3                           10                            131
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED        2     11     81
  AMP PEAK 37(17Q25.1) WILD-TYPE      6    205    200
D37V10, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                           11                            205
  CLUS_3                           81                            200
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED       48      8     18
  AMP PEAK 37(17Q25.1) WILD-TYPE    127    109     72
D37V11, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           48                            127
  CLUS_2                            8                            109
  CLUS_3                           18                             72
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED        1     63     10
  AMP PEAK 37(17Q25.1) WILD-TYPE     29    135    144
D37V12, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                           63                            135
  CLUS_3                           10                            144

Clustering(38) Variable = AMP PEAK 38(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(18P11.31) MUTATED        1      5      1      0
  AMP PEAK 38(18P11.31) WILD-TYPE     13     12     11     10
D38V1, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             5                              12
  CLUS_3                             1                              11
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED        1      1      5
  AMP PEAK 38(18P11.31) WILD-TYPE     18     18     10
D38V2, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             1                              18
  CLUS_2                             1                              18
  CLUS_3                             5                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(18P11.31) MUTATED        5      6     79      1      0
  AMP PEAK 38(18P11.31) WILD-TYPE    300     42     75     11      5
D38V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED       54     19      7
  AMP PEAK 38(18P11.31) WILD-TYPE     98     75    157
D38V4, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            54                              98
  CLUS_2                            19                              75
  CLUS_3                             7                             157
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 38(18P11.31) MUTATED        7      4      0      0      1      5
  AMP PEAK 38(18P11.31) WILD-TYPE     34     33     39     12     40     19
D38V5, multiclass
D38V6, binary
                                 cls
clus                                0   1
  AMP PEAK 38(18P11.31) MUTATED     6  11
  AMP PEAK 38(18P11.31) WILD-TYPE 115  62
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 38(18P11.31) MUTATED      6   11
  AMP PEAK 38(18P11.31) WILD-TYPE  115   62
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             6                             115
  CLUS_2                            11                              62
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED       80      3      8
  AMP PEAK 38(18P11.31) WILD-TYPE    144    147    137
D38V7, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            80                             144
  CLUS_2                             3                             147
  CLUS_3                             8                             137
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED        8      2     81
  AMP PEAK 38(18P11.31) WILD-TYPE    139    130    159
D38V8, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             8                             139
  CLUS_2                             2                             130
  CLUS_3                            81                             159
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED       72      7      8
  AMP PEAK 38(18P11.31) WILD-TYPE    133    152    133
D38V9, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            72                             133
  CLUS_2                             7                             152
  CLUS_3                             8                             133
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED        1     10     76
  AMP PEAK 38(18P11.31) WILD-TYPE      7    206    205
D38V10, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                            10                             206
  CLUS_3                            76                             205
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED       48      6     21
  AMP PEAK 38(18P11.31) WILD-TYPE    127    111     69
D38V11, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            48                             127
  CLUS_2                             6                             111
  CLUS_3                            21                              69
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED        2     66      7
  AMP PEAK 38(18P11.31) WILD-TYPE     28    132    147
D38V12, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             2                              28
  CLUS_2                            66                             132
  CLUS_3                             7                             147

Clustering(39) Variable = AMP PEAK 39(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18Q11.2) MUTATED        0      4      1      0
  AMP PEAK 39(18Q11.2) WILD-TYPE     14     13     11     10
D39V1, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            4                             13
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED        0      1      4
  AMP PEAK 39(18Q11.2) WILD-TYPE     19     18     11
D39V2, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            1                             18
  CLUS_3                            4                             11
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(18Q11.2) MUTATED        3      3     60      1      0
  AMP PEAK 39(18Q11.2) WILD-TYPE    302     45     94     11      5
D39V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED       40     16      3
  AMP PEAK 39(18Q11.2) WILD-TYPE    112     78    161
D39V4, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                           40                            112
  CLUS_2                           16                             78
  CLUS_3                            3                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 39(18Q11.2) MUTATED        6      3      1      0      1      3
  AMP PEAK 39(18Q11.2) WILD-TYPE     35     34     38     12     40     21
D39V5, multiclass
D39V6, binary
                                cls
clus                               0   1
  AMP PEAK 39(18Q11.2) MUTATED     5   9
  AMP PEAK 39(18Q11.2) WILD-TYPE 116  64
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 39(18Q11.2) MUTATED      5    9
  AMP PEAK 39(18Q11.2) WILD-TYPE  116   64
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            5                            116
  CLUS_2                            9                             64
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED       61      3      3
  AMP PEAK 39(18Q11.2) WILD-TYPE    163    147    142
D39V7, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                           61                            163
  CLUS_2                            3                            147
  CLUS_3                            3                            142
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED        3      2     62
  AMP PEAK 39(18Q11.2) WILD-TYPE    144    130    178
D39V8, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            3                            144
  CLUS_2                            2                            130
  CLUS_3                           62                            178
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED       55      2      8
  AMP PEAK 39(18Q11.2) WILD-TYPE    150    157    133
D39V9, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                           55                            150
  CLUS_2                            2                            157
  CLUS_3                            8                            133
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED        0      4     61
  AMP PEAK 39(18Q11.2) WILD-TYPE      8    212    220
D39V10, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            4                            212
  CLUS_3                           61                            220
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED       41      1     13
  AMP PEAK 39(18Q11.2) WILD-TYPE    134    116     77
D39V11, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                           41                            134
  CLUS_2                            1                            116
  CLUS_3                           13                             77
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED        2     52      1
  AMP PEAK 39(18Q11.2) WILD-TYPE     28    146    153
D39V12, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           52                            146
  CLUS_3                            1                            153

Clustering(40) Variable = AMP PEAK 40(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(19P13.2) MUTATED        0      9      0      0
  AMP PEAK 40(19P13.2) WILD-TYPE     14      8     12     10
D40V1, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            9                              8
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED        0      0      9
  AMP PEAK 40(19P13.2) WILD-TYPE     19     19      6
D40V2, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            0                             19
  CLUS_3                            9                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(19P13.2) MUTATED        0      2     84      2      0
  AMP PEAK 40(19P13.2) WILD-TYPE    305     46     70     10      5
D40V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       49     21      7
  AMP PEAK 40(19P13.2) WILD-TYPE    103     73    157
D40V4, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           49                            103
  CLUS_2                           21                             73
  CLUS_3                            7                            157
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 40(19P13.2) MUTATED        6      6      2      0      1      3
  AMP PEAK 40(19P13.2) WILD-TYPE     35     31     37     12     40     21
D40V5, multiclass
D40V6, binary
                                cls
clus                               0   1
  AMP PEAK 40(19P13.2) MUTATED     7  11
  AMP PEAK 40(19P13.2) WILD-TYPE 114  62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 40(19P13.2) MUTATED      7   11
  AMP PEAK 40(19P13.2) WILD-TYPE  114   62
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                           11                             62
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       78      2      7
  AMP PEAK 40(19P13.2) WILD-TYPE    146    148    138
D40V7, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           78                            146
  CLUS_2                            2                            148
  CLUS_3                            7                            138
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED        7      1     79
  AMP PEAK 40(19P13.2) WILD-TYPE    140    131    161
D40V8, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            7                            140
  CLUS_2                            1                            131
  CLUS_3                           79                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       70      8      6
  AMP PEAK 40(19P13.2) WILD-TYPE    135    151    135
D40V9, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           70                            135
  CLUS_2                            8                            151
  CLUS_3                            6                            135
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED        3     13     68
  AMP PEAK 40(19P13.2) WILD-TYPE      5    203    213
D40V10, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                           13                            203
  CLUS_3                           68                            213
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       46      9     17
  AMP PEAK 40(19P13.2) WILD-TYPE    129    108     73
D40V11, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           46                            129
  CLUS_2                            9                            108
  CLUS_3                           17                             73
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED        2     58     12
  AMP PEAK 40(19P13.2) WILD-TYPE     28    140    142
D40V12, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           58                            140
  CLUS_3                           12                            142

Clustering(41) Variable = AMP PEAK 41(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.12) MUTATED        1      7      0      0
  AMP PEAK 41(19P13.12) WILD-TYPE     13     10     12     10
D41V1, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             7                              10
  CLUS_3                             0                              12
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED        1      0      7
  AMP PEAK 41(19P13.12) WILD-TYPE     18     19      8
D41V2, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             1                              18
  CLUS_2                             0                              19
  CLUS_3                             7                               8
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(19P13.12) MUTATED        0      3     85      2      1
  AMP PEAK 41(19P13.12) WILD-TYPE    305     45     69     10      4
D41V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED       51     19      7
  AMP PEAK 41(19P13.12) WILD-TYPE    101     75    157
D41V4, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            51                             101
  CLUS_2                            19                              75
  CLUS_3                             7                             157
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 41(19P13.12) MUTATED        4      9      3      0      1      4
  AMP PEAK 41(19P13.12) WILD-TYPE     37     28     36     12     40     20
D41V5, multiclass
D41V6, binary
                                 cls
clus                                0   1
  AMP PEAK 41(19P13.12) MUTATED    10  11
  AMP PEAK 41(19P13.12) WILD-TYPE 111  62
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 41(19P13.12) MUTATED     10   11
  AMP PEAK 41(19P13.12) WILD-TYPE  111   62
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            10                             111
  CLUS_2                            11                              62
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED       81      4      5
  AMP PEAK 41(19P13.12) WILD-TYPE    143    146    140
D41V7, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            81                             143
  CLUS_2                             4                             146
  CLUS_3                             5                             140
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED        5      3     82
  AMP PEAK 41(19P13.12) WILD-TYPE    142    129    158
D41V8, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             5                             142
  CLUS_2                             3                             129
  CLUS_3                            82                             158
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED       71      8      9
  AMP PEAK 41(19P13.12) WILD-TYPE    134    151    132
D41V9, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            71                             134
  CLUS_2                             8                             151
  CLUS_3                             9                             132
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED        3     13     72
  AMP PEAK 41(19P13.12) WILD-TYPE      5    203    209
D41V10, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             3                               5
  CLUS_2                            13                             203
  CLUS_3                            72                             209
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED       47      7     19
  AMP PEAK 41(19P13.12) WILD-TYPE    128    110     71
D41V11, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            47                             128
  CLUS_2                             7                             110
  CLUS_3                            19                              71
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED        3     59     11
  AMP PEAK 41(19P13.12) WILD-TYPE     27    139    143
D41V12, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             3                              27
  CLUS_2                            59                             139
  CLUS_3                            11                             143

Clustering(42) Variable = AMP PEAK 42(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19Q12) MUTATED        1      8      1      0
  AMP PEAK 42(19Q12) WILD-TYPE     13      9     11     10
D42V1, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          8                            9
  CLUS_3                          1                           11
  CLUS_4                          0                           10
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED        2      0      8
  AMP PEAK 42(19Q12) WILD-TYPE     17     19      7
D42V2, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          2                           17
  CLUS_2                          0                           19
  CLUS_3                          8                            7
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(19Q12) MUTATED        3      5    105      2      0
  AMP PEAK 42(19Q12) WILD-TYPE    302     43     49     10      5
D42V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED       70     23      8
  AMP PEAK 42(19Q12) WILD-TYPE     82     71    156
D42V4, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                         70                           82
  CLUS_2                         23                           71
  CLUS_3                          8                          156
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 42(19Q12) MUTATED        5      6      1      0      1      7
  AMP PEAK 42(19Q12) WILD-TYPE     36     31     38     12     40     17
D42V5, multiclass
D42V6, binary
                              cls
clus                             0   1
  AMP PEAK 42(19Q12) MUTATED     9  11
  AMP PEAK 42(19Q12) WILD-TYPE 112  62
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 42(19Q12) MUTATED      9   11
  AMP PEAK 42(19Q12) WILD-TYPE  112   62
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          9                          112
  CLUS_2                         11                           62
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED      106      2      7
  AMP PEAK 42(19Q12) WILD-TYPE    118    148    138
D42V7, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                        106                          118
  CLUS_2                          2                          148
  CLUS_3                          7                          138
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED        6      2    107
  AMP PEAK 42(19Q12) WILD-TYPE    141    130    133
D42V8, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          6                          141
  CLUS_2                          2                          130
  CLUS_3                        107                          133
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED       90      8      9
  AMP PEAK 42(19Q12) WILD-TYPE    115    151    132
D42V9, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                         90                          115
  CLUS_2                          8                          151
  CLUS_3                          9                          132
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED        3     12     92
  AMP PEAK 42(19Q12) WILD-TYPE      5    204    189
D42V10, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          3                            5
  CLUS_2                         12                          204
  CLUS_3                         92                          189
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED       60      9     24
  AMP PEAK 42(19Q12) WILD-TYPE    115    108     66
D42V11, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                         60                          115
  CLUS_2                          9                          108
  CLUS_3                         24                           66
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED        3     78     12
  AMP PEAK 42(19Q12) WILD-TYPE     27    120    142
D42V12, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          3                           27
  CLUS_2                         78                          120
  CLUS_3                         12                          142

Clustering(43) Variable = AMP PEAK 43(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(20P13) MUTATED        1      4      0      0
  AMP PEAK 43(20P13) WILD-TYPE     13     13     12     10
D43V1, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          4                           13
  CLUS_3                          0                           12
  CLUS_4                          0                           10
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED        1      0      4
  AMP PEAK 43(20P13) WILD-TYPE     18     19     11
D43V2, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          1                           18
  CLUS_2                          0                           19
  CLUS_3                          4                           11
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(20P13) MUTATED        8     20     82      1      2
  AMP PEAK 43(20P13) WILD-TYPE    297     28     72     11      3
D43V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       67     20     16
  AMP PEAK 43(20P13) WILD-TYPE     85     74    148
D43V4, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         67                           85
  CLUS_2                         20                           74
  CLUS_3                         16                          148
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 43(20P13) MUTATED        6      7      4      0      2      6
  AMP PEAK 43(20P13) WILD-TYPE     35     30     35     12     39     18
D43V5, multiclass
D43V6, binary
                              cls
clus                             0   1
  AMP PEAK 43(20P13) MUTATED    14  11
  AMP PEAK 43(20P13) WILD-TYPE 107  62
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 43(20P13) MUTATED     14   11
  AMP PEAK 43(20P13) WILD-TYPE  107   62
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         14                          107
  CLUS_2                         11                           62
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       86     12     14
  AMP PEAK 43(20P13) WILD-TYPE    138    138    131
D43V7, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         86                          138
  CLUS_2                         12                          138
  CLUS_3                         14                          131
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       17     10     85
  AMP PEAK 43(20P13) WILD-TYPE    130    122    155
D43V8, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         17                          130
  CLUS_2                         10                          122
  CLUS_3                         85                          155
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       79     15     17
  AMP PEAK 43(20P13) WILD-TYPE    126    144    124
D43V9, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         79                          126
  CLUS_2                         15                          144
  CLUS_3                         17                          124
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED        1     21     89
  AMP PEAK 43(20P13) WILD-TYPE      7    195    192
D43V10, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          1                            7
  CLUS_2                         21                          195
  CLUS_3                         89                          192
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       61     14     20
  AMP PEAK 43(20P13) WILD-TYPE    114    103     70
D43V11, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         61                          114
  CLUS_2                         14                          103
  CLUS_3                         20                           70
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED        5     74     16
  AMP PEAK 43(20P13) WILD-TYPE     25    124    138
D43V12, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         74                          124
  CLUS_3                         16                          138

Clustering(44) Variable = AMP PEAK 44(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20Q11.21) MUTATED        2      8      0      0
  AMP PEAK 44(20Q11.21) WILD-TYPE     12      9     12     10
D44V1, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             8                               9
  CLUS_3                             0                              12
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED        2      0      8
  AMP PEAK 44(20Q11.21) WILD-TYPE     17     19      7
D44V2, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             2                              17
  CLUS_2                             0                              19
  CLUS_3                             8                               7
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(20Q11.21) MUTATED        7     26    106      1      2
  AMP PEAK 44(20Q11.21) WILD-TYPE    298     22     48     11      3
D44V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       79     24     21
  AMP PEAK 44(20Q11.21) WILD-TYPE     73     70    143
D44V4, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            79                              73
  CLUS_2                            24                              70
  CLUS_3                            21                             143
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 44(20Q11.21) MUTATED        7     11      2      0      2      8
  AMP PEAK 44(20Q11.21) WILD-TYPE     34     26     37     12     39     16
D44V5, multiclass
D44V6, binary
                                 cls
clus                                0   1
  AMP PEAK 44(20Q11.21) MUTATED    15  15
  AMP PEAK 44(20Q11.21) WILD-TYPE 106  58
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 44(20Q11.21) MUTATED     15   15
  AMP PEAK 44(20Q11.21) WILD-TYPE  106   58
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            15                             106
  CLUS_2                            15                              58
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED      112     10     19
  AMP PEAK 44(20Q11.21) WILD-TYPE    112    140    126
D44V7, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                           112                             112
  CLUS_2                            10                             140
  CLUS_3                            19                             126
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       20      9    112
  AMP PEAK 44(20Q11.21) WILD-TYPE    127    123    128
D44V8, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            20                             127
  CLUS_2                             9                             123
  CLUS_3                           112                             128
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       99     19     18
  AMP PEAK 44(20Q11.21) WILD-TYPE    106    140    123
D44V9, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            99                             106
  CLUS_2                            19                             140
  CLUS_3                            18                             123
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED        4     27    105
  AMP PEAK 44(20Q11.21) WILD-TYPE      4    189    176
D44V10, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             4                               4
  CLUS_2                            27                             189
  CLUS_3                           105                             176
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       74     20     22
  AMP PEAK 44(20Q11.21) WILD-TYPE    101     97     68
D44V11, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            74                             101
  CLUS_2                            20                              97
  CLUS_3                            22                              68
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED        9     83     24
  AMP PEAK 44(20Q11.21) WILD-TYPE     21    115    130
D44V12, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             9                              21
  CLUS_2                            83                             115
  CLUS_3                            24                             130

Clustering(45) Variable = AMP PEAK 45(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q13.12) MUTATED        1      6      0      0
  AMP PEAK 45(20Q13.12) WILD-TYPE     13     11     12     10
D45V1, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             6                              11
  CLUS_3                             0                              12
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED        1      0      6
  AMP PEAK 45(20Q13.12) WILD-TYPE     18     19      9
D45V2, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                             1                              18
  CLUS_2                             0                              19
  CLUS_3                             6                               9
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20Q13.12) MUTATED        9     28    105      1      2
  AMP PEAK 45(20Q13.12) WILD-TYPE    296     20     49     11      3
D45V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       84     23     24
  AMP PEAK 45(20Q13.12) WILD-TYPE     68     71    140
D45V4, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            84                              68
  CLUS_2                            23                              71
  CLUS_3                            24                             140
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 45(20Q13.12) MUTATED        6     12      2      1      3      7
  AMP PEAK 45(20Q13.12) WILD-TYPE     35     25     37     11     38     17
D45V5, multiclass
D45V6, binary
                                 cls
clus                                0   1
  AMP PEAK 45(20Q13.12) MUTATED    15  16
  AMP PEAK 45(20Q13.12) WILD-TYPE 106  57
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 45(20Q13.12) MUTATED     15   16
  AMP PEAK 45(20Q13.12) WILD-TYPE  106   57
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            15                             106
  CLUS_2                            16                              57
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED      112     12     20
  AMP PEAK 45(20Q13.12) WILD-TYPE    112    138    125
D45V7, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                           112                             112
  CLUS_2                            12                             138
  CLUS_3                            20                             125
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       21     11    112
  AMP PEAK 45(20Q13.12) WILD-TYPE    126    121    128
D45V8, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            21                             126
  CLUS_2                            11                             121
  CLUS_3                           112                             128
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED      102     22     18
  AMP PEAK 45(20Q13.12) WILD-TYPE    103    137    123
D45V9, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                           102                             103
  CLUS_2                            22                             137
  CLUS_3                            18                             123
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED        5     28    109
  AMP PEAK 45(20Q13.12) WILD-TYPE      3    188    172
D45V10, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                             5                               3
  CLUS_2                            28                             188
  CLUS_3                           109                             172
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       76     22     25
  AMP PEAK 45(20Q13.12) WILD-TYPE     99     95     65
D45V11, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            76                              99
  CLUS_2                            22                              95
  CLUS_3                            25                              65
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       10     86     27
  AMP PEAK 45(20Q13.12) WILD-TYPE     20    112    127
D45V12, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            10                              20
  CLUS_2                            86                             112
  CLUS_3                            27                             127

Clustering(46) Variable = AMP PEAK 46(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.33) MUTATED        2      6      0      0
  AMP PEAK 46(20Q13.33) WILD-TYPE     12     11     12     10
D46V1, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             6                              11
  CLUS_3                             0                              12
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED        2      0      6
  AMP PEAK 46(20Q13.33) WILD-TYPE     17     19      9
D46V2, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                             2                              17
  CLUS_2                             0                              19
  CLUS_3                             6                               9
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q13.33) MUTATED       10     30     99      1      2
  AMP PEAK 46(20Q13.33) WILD-TYPE    295     18     55     11      3
D46V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       78     24     24
  AMP PEAK 46(20Q13.33) WILD-TYPE     74     70    140
D46V4, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            78                              74
  CLUS_2                            24                              70
  CLUS_3                            24                             140
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 46(20Q13.33) MUTATED        6     10      4      1      3      7
  AMP PEAK 46(20Q13.33) WILD-TYPE     35     27     35     11     38     17
D46V5, multiclass
D46V6, binary
                                 cls
clus                                0   1
  AMP PEAK 46(20Q13.33) MUTATED    18  13
  AMP PEAK 46(20Q13.33) WILD-TYPE 103  60
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 46(20Q13.33) MUTATED     18   13
  AMP PEAK 46(20Q13.33) WILD-TYPE  103   60
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            18                             103
  CLUS_2                            13                              60
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED      107     15     20
  AMP PEAK 46(20Q13.33) WILD-TYPE    117    135    125
D46V7, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                           107                             117
  CLUS_2                            15                             135
  CLUS_3                            20                             125
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       22     13    107
  AMP PEAK 46(20Q13.33) WILD-TYPE    125    119    133
D46V8, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            22                             125
  CLUS_2                            13                             119
  CLUS_3                           107                             133
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       97     23     18
  AMP PEAK 46(20Q13.33) WILD-TYPE    108    136    123
D46V9, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            97                             108
  CLUS_2                            23                             136
  CLUS_3                            18                             123
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED        4     30    104
  AMP PEAK 46(20Q13.33) WILD-TYPE      4    186    177
D46V10, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                             4                               4
  CLUS_2                            30                             186
  CLUS_3                           104                             177
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       71     22     25
  AMP PEAK 46(20Q13.33) WILD-TYPE    104     95     65
D46V11, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            71                             104
  CLUS_2                            22                              95
  CLUS_3                            25                              65
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED        9     83     26
  AMP PEAK 46(20Q13.33) WILD-TYPE     21    115    128
D46V12, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                             9                              21
  CLUS_2                            83                             115
  CLUS_3                            26                             128

Clustering(47) Variable = AMP PEAK 47(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(22Q12.2) MUTATED        1      3      0      0
  AMP PEAK 47(22Q12.2) WILD-TYPE     13     14     12     10
D47V1, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED        1      0      3
  AMP PEAK 47(22Q12.2) WILD-TYPE     18     19     12
D47V2, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            3                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(22Q12.2) MUTATED        4      5     49      0      1
  AMP PEAK 47(22Q12.2) WILD-TYPE    301     43    105     12      4
D47V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED       45      9      0
  AMP PEAK 47(22Q12.2) WILD-TYPE    107     85    164
D47V4, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                           45                            107
  CLUS_2                            9                             85
  CLUS_3                            0                            164
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 47(22Q12.2) MUTATED        3      3      0      0      0      2
  AMP PEAK 47(22Q12.2) WILD-TYPE     38     34     39     12     41     22
D47V5, multiclass
D47V6, binary
                                cls
clus                               0   1
  AMP PEAK 47(22Q12.2) MUTATED     2   6
  AMP PEAK 47(22Q12.2) WILD-TYPE 119  67
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 47(22Q12.2) MUTATED      2    6
  AMP PEAK 47(22Q12.2) WILD-TYPE  119   67
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            2                            119
  CLUS_2                            6                             67
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED       57      1      0
  AMP PEAK 47(22Q12.2) WILD-TYPE    167    149    145
D47V7, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                           57                            167
  CLUS_2                            1                            149
  CLUS_3                            0                            145
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED        0      1     57
  AMP PEAK 47(22Q12.2) WILD-TYPE    147    131    183
D47V8, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            0                            147
  CLUS_2                            1                            131
  CLUS_3                           57                            183
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED       55      0      2
  AMP PEAK 47(22Q12.2) WILD-TYPE    150    159    139
D47V9, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                           55                            150
  CLUS_2                            0                            159
  CLUS_3                            2                            139
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED        0      2     55
  AMP PEAK 47(22Q12.2) WILD-TYPE      8    214    226
D47V10, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            2                            214
  CLUS_3                           55                            226
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED       44      1      7
  AMP PEAK 47(22Q12.2) WILD-TYPE    131    116     83
D47V11, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                           44                            131
  CLUS_2                            1                            116
  CLUS_3                            7                             83
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED        1     50      1
  AMP PEAK 47(22Q12.2) WILD-TYPE     29    148    153
D47V12, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                           50                            148
  CLUS_3                            1                            153

Clustering(48) Variable = AMP PEAK 48(XP11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(XP11.23) MUTATED        1      4      2      0
  AMP PEAK 48(XP11.23) WILD-TYPE     13     13     10     10
D48V1, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                             13
  CLUS_3                            2                             10
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED        2      2      3
  AMP PEAK 48(XP11.23) WILD-TYPE     17     17     12
D48V2, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            2                             17
  CLUS_3                            3                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(XP11.23) MUTATED       11     20     44     10      2
  AMP PEAK 48(XP11.23) WILD-TYPE    294     28    110      2      3
D48V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       36     16     16
  AMP PEAK 48(XP11.23) WILD-TYPE    116     78    148
D48V4, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           36                            116
  CLUS_2                           16                             78
  CLUS_3                           16                            148
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 48(XP11.23) MUTATED        6      7      6      2      3      4
  AMP PEAK 48(XP11.23) WILD-TYPE     35     30     33     10     38     20
D48V5, multiclass
D48V6, binary
                                cls
clus                               0   1
  AMP PEAK 48(XP11.23) MUTATED    20   8
  AMP PEAK 48(XP11.23) WILD-TYPE 101  65
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 48(XP11.23) MUTATED     20    8
  AMP PEAK 48(XP11.23) WILD-TYPE  101   65
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           20                            101
  CLUS_2                            8                             65
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       54     15     16
  AMP PEAK 48(XP11.23) WILD-TYPE    170    135    129
D48V7, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           54                            170
  CLUS_2                           15                            135
  CLUS_3                           16                            129
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       17     11     57
  AMP PEAK 48(XP11.23) WILD-TYPE    130    121    183
D48V8, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           17                            130
  CLUS_2                           11                            121
  CLUS_3                           57                            183
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       54     16     15
  AMP PEAK 48(XP11.23) WILD-TYPE    151    143    126
D48V9, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           54                            151
  CLUS_2                           16                            143
  CLUS_3                           15                            126
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED        1     25     59
  AMP PEAK 48(XP11.23) WILD-TYPE      7    191    222
D48V10, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                           25                            191
  CLUS_3                           59                            222
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       40     12     14
  AMP PEAK 48(XP11.23) WILD-TYPE    135    105     76
D48V11, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           40                            135
  CLUS_2                           12                            105
  CLUS_3                           14                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED        4     46     16
  AMP PEAK 48(XP11.23) WILD-TYPE     26    152    138
D48V12, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           46                            152
  CLUS_3                           16                            138

Clustering(49) Variable = AMP PEAK 49(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XQ28) MUTATED        1      6      2      0
  AMP PEAK 49(XQ28) WILD-TYPE     13     11     10     10
D49V1, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         6                          11
  CLUS_3                         2                          10
  CLUS_4                         0                          10
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED        2      1      6
  AMP PEAK 49(XQ28) WILD-TYPE     17     18      9
D49V2, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                         2                          17
  CLUS_2                         1                          18
  CLUS_3                         6                           9
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(XQ28) MUTATED       13     20     45      9      2
  AMP PEAK 49(XQ28) WILD-TYPE    292     28    109      3      3
D49V3, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       32     16     19
  AMP PEAK 49(XQ28) WILD-TYPE    120     78    145
D49V4, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        32                         120
  CLUS_2                        16                          78
  CLUS_3                        19                         145
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 49(XQ28) MUTATED        4      9      4      2      3      5
  AMP PEAK 49(XQ28) WILD-TYPE     37     28     35     10     38     19
D49V5, multiclass
D49V6, binary
                             cls
clus                            0   1
  AMP PEAK 49(XQ28) MUTATED    16  11
  AMP PEAK 49(XQ28) WILD-TYPE 105  62
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 49(XQ28) MUTATED     16   11
  AMP PEAK 49(XQ28) WILD-TYPE  105   62
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        16                         105
  CLUS_2                        11                          62
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       53     16     18
  AMP PEAK 49(XQ28) WILD-TYPE    171    134    127
D49V7, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        53                         171
  CLUS_2                        16                         134
  CLUS_3                        18                         127
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       17     13     57
  AMP PEAK 49(XQ28) WILD-TYPE    130    119    183
D49V8, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        17                         130
  CLUS_2                        13                         119
  CLUS_3                        57                         183
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       48     16     19
  AMP PEAK 49(XQ28) WILD-TYPE    157    143    122
D49V9, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        48                         157
  CLUS_2                        16                         143
  CLUS_3                        19                         122
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED        2     28     53
  AMP PEAK 49(XQ28) WILD-TYPE      6    188    228
D49V10, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                         2                           6
  CLUS_2                        28                         188
  CLUS_3                        53                         228
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       37     15     13
  AMP PEAK 49(XQ28) WILD-TYPE    138    102     77
D49V11, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        37                         138
  CLUS_2                        15                         102
  CLUS_3                        13                          77
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED        4     40     21
  AMP PEAK 49(XQ28) WILD-TYPE     26    158    133
D49V12, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                         4                          26
  CLUS_2                        40                         158
  CLUS_3                        21                         133

Clustering(50) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        2      6      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     12     11     12     10
D50V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        2      0      6
  DEL PEAK  1(1P36.21) WILD-TYPE     17     19      9
D50V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            0                             19
  CLUS_3                            6                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        3      8     57      0      2
  DEL PEAK  1(1P36.21) WILD-TYPE    302     40     97     12      3
D50V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       36     17      6
  DEL PEAK  1(1P36.21) WILD-TYPE    116     77    158
D50V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           36                            116
  CLUS_2                           17                             77
  CLUS_3                            6                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        3      8      0      0      1      3
  DEL PEAK  1(1P36.21) WILD-TYPE     38     29     39     12     40     21
D50V5, multiclass
D50V6, binary
                                cls
clus                               0   1
  DEL PEAK  1(1P36.21) MUTATED     7   8
  DEL PEAK  1(1P36.21) WILD-TYPE 114  65
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.21) MUTATED      7    8
  DEL PEAK  1(1P36.21) WILD-TYPE  114   65
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            8                             65
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       60      6      4
  DEL PEAK  1(1P36.21) WILD-TYPE    164    144    141
D50V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           60                            164
  CLUS_2                            6                            144
  CLUS_3                            4                            141
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        4      6     60
  DEL PEAK  1(1P36.21) WILD-TYPE    143    126    180
D50V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            4                            143
  CLUS_2                            6                            126
  CLUS_3                           60                            180
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       49      7      8
  DEL PEAK  1(1P36.21) WILD-TYPE    156    152    133
D50V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           49                            156
  CLUS_2                            7                            152
  CLUS_3                            8                            133
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        2      7     55
  DEL PEAK  1(1P36.21) WILD-TYPE      6    209    226
D50V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            7                            209
  CLUS_3                           55                            226
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       28      6     22
  DEL PEAK  1(1P36.21) WILD-TYPE    147    111     68
D50V11, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           28                            147
  CLUS_2                            6                            111
  CLUS_3                           22                             68
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        3     44      9
  DEL PEAK  1(1P36.21) WILD-TYPE     27    154    145
D50V12, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           44                            154
  CLUS_3                            9                            145

Clustering(51) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        1      5      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     13     12     12     10
D51V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED        1      0      5
  DEL PEAK  2(1P36.11) WILD-TYPE     18     19     10
D51V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            5                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED        2      8     70      0      2
  DEL PEAK  2(1P36.11) WILD-TYPE    303     40     84     12      3
D51V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       51     16      6
  DEL PEAK  2(1P36.11) WILD-TYPE    101     78    158
D51V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           51                            101
  CLUS_2                           16                             78
  CLUS_3                            6                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED        3      7      0      1      1      2
  DEL PEAK  2(1P36.11) WILD-TYPE     38     30     39     11     40     22
D51V5, multiclass
D51V6, binary
                                cls
clus                               0   1
  DEL PEAK  2(1P36.11) MUTATED     7   7
  DEL PEAK  2(1P36.11) WILD-TYPE 114  66
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.11) MUTATED      7    7
  DEL PEAK  2(1P36.11) WILD-TYPE  114   66
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            7                             66
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       72      6      4
  DEL PEAK  2(1P36.11) WILD-TYPE    152    144    141
D51V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           72                            152
  CLUS_2                            6                            144
  CLUS_3                            4                            141
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED        4      6     72
  DEL PEAK  2(1P36.11) WILD-TYPE    143    126    168
D51V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            4                            143
  CLUS_2                            6                            126
  CLUS_3                           72                            168
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       61      8      9
  DEL PEAK  2(1P36.11) WILD-TYPE    144    151    132
D51V9, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           61                            144
  CLUS_2                            8                            151
  CLUS_3                            9                            132
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED        4      7     67
  DEL PEAK  2(1P36.11) WILD-TYPE      4    209    214
D51V10, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            7                            209
  CLUS_3                           67                            214
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       46      7     19
  DEL PEAK  2(1P36.11) WILD-TYPE    129    110     71
D51V11, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           46                            129
  CLUS_2                            7                            110
  CLUS_3                           19                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED        4     58     10
  DEL PEAK  2(1P36.11) WILD-TYPE     26    140    144
D51V12, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           58                            140
  CLUS_3                           10                            144

Clustering(52) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     14     16     12     10
D52V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        0      0      1
  DEL PEAK  3(2P25.3) WILD-TYPE     19     19     14
D52V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED        2      1     22      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE    303     47    132     12      5
D52V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       17      5      2
  DEL PEAK  3(2P25.3) WILD-TYPE    135     89    162
D52V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          17                           135
  CLUS_2                           5                            89
  CLUS_3                           2                           162
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        2      0      1      0      0      2
  DEL PEAK  3(2P25.3) WILD-TYPE     39     37     38     12     41     22
D52V5, multiclass
D52V6, binary
                               cls
clus                              0   1
  DEL PEAK  3(2P25.3) MUTATED     4   1
  DEL PEAK  3(2P25.3) WILD-TYPE 117  72
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2P25.3) MUTATED      4    1
  DEL PEAK  3(2P25.3) WILD-TYPE  117   72
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                           1                            72
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       21      1      3
  DEL PEAK  3(2P25.3) WILD-TYPE    203    149    142
D52V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          21                           203
  CLUS_2                           1                           149
  CLUS_3                           3                           142
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        3      1     21
  DEL PEAK  3(2P25.3) WILD-TYPE    144    131    219
D52V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           1                           131
  CLUS_3                          21                           219
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       19      3      3
  DEL PEAK  3(2P25.3) WILD-TYPE    186    156    138
D52V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          19                           186
  CLUS_2                           3                           156
  CLUS_3                           3                           138
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        0      4     21
  DEL PEAK  3(2P25.3) WILD-TYPE      8    212    260
D52V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                           4                           212
  CLUS_3                          21                           260
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       13      4      5
  DEL PEAK  3(2P25.3) WILD-TYPE    162    113     85
D52V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          13                           162
  CLUS_2                           4                           113
  CLUS_3                           5                            85
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        2     16      4
  DEL PEAK  3(2P25.3) WILD-TYPE     28    182    150
D52V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                          16                           182
  CLUS_3                           4                           150

Clustering(53) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        0      4      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     14     13     12     10
D53V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            13
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        0      0      4
  DEL PEAK  4(2Q22.1) WILD-TYPE     19     19     11
D53V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           4                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        0      4     42      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    305     44    112     12      5
D53V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       26     10      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    126     84    160
D53V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          26                           126
  CLUS_2                          10                            84
  CLUS_3                           4                           160
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        2      3      0      0      0      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     39     34     39     12     41     21
D53V5, multiclass
D53V6, binary
                               cls
clus                              0   1
  DEL PEAK  4(2Q22.1) MUTATED     3   5
  DEL PEAK  4(2Q22.1) WILD-TYPE 118  68
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q22.1) MUTATED      3    5
  DEL PEAK  4(2Q22.1) WILD-TYPE  118   68
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           3                           118
  CLUS_2                           5                            68
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       41      0      5
  DEL PEAK  4(2Q22.1) WILD-TYPE    183    150    140
D53V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          41                           183
  CLUS_2                           0                           150
  CLUS_3                           5                           140
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        6      0     40
  DEL PEAK  4(2Q22.1) WILD-TYPE    141    132    200
D53V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           6                           141
  CLUS_2                           0                           132
  CLUS_3                          40                           200
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       35      4      5
  DEL PEAK  4(2Q22.1) WILD-TYPE    170    155    136
D53V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          35                           170
  CLUS_2                           4                           155
  CLUS_3                           5                           136
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        2      5     37
  DEL PEAK  4(2Q22.1) WILD-TYPE      6    211    244
D53V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           5                           211
  CLUS_3                          37                           244
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       27      6      6
  DEL PEAK  4(2Q22.1) WILD-TYPE    148    111     84
D53V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          27                           148
  CLUS_2                           6                           111
  CLUS_3                           6                            84
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        2     30      7
  DEL PEAK  4(2Q22.1) WILD-TYPE     28    168    147
D53V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                          30                           168
  CLUS_3                           7                           147

Clustering(54) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     14     16     12     10
D54V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        0      0      1
  DEL PEAK  5(2Q37.3) WILD-TYPE     19     19     14
D54V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED        2      7     42      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE    303     41    112     12      5
D54V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       31      8      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    121     86    156
D54V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          31                           121
  CLUS_2                           8                            86
  CLUS_3                           8                           156
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        4      3      0      0      1      2
  DEL PEAK  5(2Q37.3) WILD-TYPE     37     34     39     12     40     22
D54V5, multiclass
D54V6, binary
                               cls
clus                              0   1
  DEL PEAK  5(2Q37.3) MUTATED     5   5
  DEL PEAK  5(2Q37.3) WILD-TYPE 116  68
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.3) MUTATED      5    5
  DEL PEAK  5(2Q37.3) WILD-TYPE  116   68
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                           5                            68
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       40      3      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    184    147    138
D54V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          40                           184
  CLUS_2                           3                           147
  CLUS_3                           7                           138
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        7      3     40
  DEL PEAK  5(2Q37.3) WILD-TYPE    140    129    200
D54V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           7                           140
  CLUS_2                           3                           129
  CLUS_3                          40                           200
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       34      8      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    171    151    134
D54V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          34                           171
  CLUS_2                           8                           151
  CLUS_3                           7                           134
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        2     10     37
  DEL PEAK  5(2Q37.3) WILD-TYPE      6    206    244
D54V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                          10                           206
  CLUS_3                          37                           244
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       28      8      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    147    109     82
D54V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          28                           147
  CLUS_2                           8                           109
  CLUS_3                           8                            82
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        5     30      9
  DEL PEAK  5(2Q37.3) WILD-TYPE     25    168    145
D54V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          30                           168
  CLUS_3                           9                           145

Clustering(55) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        1      5      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     13     12     12     10
D55V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED        1      0      5
  DEL PEAK  6(3P14.2) WILD-TYPE     18     19     10
D55V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           0                            19
  CLUS_3                           5                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED        0      8     66      0      1
  DEL PEAK  6(3P14.2) WILD-TYPE    305     40     88     12      4
D55V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       43     16      5
  DEL PEAK  6(3P14.2) WILD-TYPE    109     78    159
D55V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          43                           109
  CLUS_2                          16                            78
  CLUS_3                           5                           159
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED        3     10      1      0      1      2
  DEL PEAK  6(3P14.2) WILD-TYPE     38     27     38     12     40     22
D55V5, multiclass
D55V6, binary
                               cls
clus                              0   1
  DEL PEAK  6(3P14.2) MUTATED     6  11
  DEL PEAK  6(3P14.2) WILD-TYPE 115  62
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P14.2) MUTATED      6   11
  DEL PEAK  6(3P14.2) WILD-TYPE  115   62
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          11                            62
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       69      1      4
  DEL PEAK  6(3P14.2) WILD-TYPE    155    149    141
D55V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          69                           155
  CLUS_2                           1                           149
  CLUS_3                           4                           141
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED        5      1     68
  DEL PEAK  6(3P14.2) WILD-TYPE    142    131    172
D55V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           5                           142
  CLUS_2                           1                           131
  CLUS_3                          68                           172
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       58      4     10
  DEL PEAK  6(3P14.2) WILD-TYPE    147    155    131
D55V9, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          58                           147
  CLUS_2                           4                           155
  CLUS_3                          10                           131
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED        1      9     62
  DEL PEAK  6(3P14.2) WILD-TYPE      7    207    219
D55V10, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           9                           207
  CLUS_3                          62                           219
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       42      5     14
  DEL PEAK  6(3P14.2) WILD-TYPE    133    112     76
D55V11, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          42                           133
  CLUS_2                           5                           112
  CLUS_3                          14                            76
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED        4     50      7
  DEL PEAK  6(3P14.2) WILD-TYPE     26    148    147
D55V12, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          50                           148
  CLUS_3                           7                           147

Clustering(56) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        1      3      0      0
  DEL PEAK  7(3Q13.31) WILD-TYPE     13     14     12     10
D56V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        1      0      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     18     19     12
D56V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            3                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED        1      1     28      0      1
  DEL PEAK  7(3Q13.31) WILD-TYPE    304     47    126     12      4
D56V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       18      5      4
  DEL PEAK  7(3Q13.31) WILD-TYPE    134     89    160
D56V4, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           18                            134
  CLUS_2                            5                             89
  CLUS_3                            4                            160
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        0      2      1      0      0      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     41     35     38     12     41     21
D56V5, multiclass
D56V6, binary
                                cls
clus                               0   1
  DEL PEAK  7(3Q13.31) MUTATED     4   2
  DEL PEAK  7(3Q13.31) WILD-TYPE 117  71
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(3Q13.31) MUTATED      4    2
  DEL PEAK  7(3Q13.31) WILD-TYPE  117   71
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            4                            117
  CLUS_2                            2                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       27      1      3
  DEL PEAK  7(3Q13.31) WILD-TYPE    197    149    142
D56V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           27                            197
  CLUS_2                            1                            149
  CLUS_3                            3                            142
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        3      1     27
  DEL PEAK  7(3Q13.31) WILD-TYPE    144    131    213
D56V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            3                            144
  CLUS_2                            1                            131
  CLUS_3                           27                            213
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       25      2      3
  DEL PEAK  7(3Q13.31) WILD-TYPE    180    157    138
D56V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           25                            180
  CLUS_2                            2                            157
  CLUS_3                            3                            138
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        1      3     26
  DEL PEAK  7(3Q13.31) WILD-TYPE      7    213    255
D56V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            3                            213
  CLUS_3                           26                            255
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       15      4      7
  DEL PEAK  7(3Q13.31) WILD-TYPE    160    113     83
D56V11, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           15                            160
  CLUS_2                            4                            113
  CLUS_3                            7                             83
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        2     20      4
  DEL PEAK  7(3Q13.31) WILD-TYPE     28    178    150
D56V12, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                           20                            178
  CLUS_3                            4                            150

Clustering(57) Variable = DEL PEAK  8(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        1      6      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     13     11     12     10
D57V1, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        1      0      6
  DEL PEAK  8(4P16.3) WILD-TYPE     18     19      9
D57V2, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           0                            19
  CLUS_3                           6                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED        4     13     71      1      2
  DEL PEAK  8(4P16.3) WILD-TYPE    301     35     83     11      3
D57V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       55     17      7
  DEL PEAK  8(4P16.3) WILD-TYPE     97     77    157
D57V4, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          55                            97
  CLUS_2                          17                            77
  CLUS_3                           7                           157
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED        5      9      0      1      2      5
  DEL PEAK  8(4P16.3) WILD-TYPE     36     28     39     11     39     19
D57V5, multiclass
D57V6, binary
                               cls
clus                              0   1
  DEL PEAK  8(4P16.3) MUTATED    11  11
  DEL PEAK  8(4P16.3) WILD-TYPE 110  62
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4P16.3) MUTATED     11   11
  DEL PEAK  8(4P16.3) WILD-TYPE  110   62
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          11                           110
  CLUS_2                          11                            62
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       76      6      9
  DEL PEAK  8(4P16.3) WILD-TYPE    148    144    136
D57V7, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          76                           148
  CLUS_2                           6                           144
  CLUS_3                           9                           136
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        8      7     76
  DEL PEAK  8(4P16.3) WILD-TYPE    139    125    164
D57V8, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           8                           139
  CLUS_2                           7                           125
  CLUS_3                          76                           164
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       65      9     12
  DEL PEAK  8(4P16.3) WILD-TYPE    140    150    129
D57V9, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          65                           140
  CLUS_2                           9                           150
  CLUS_3                          12                           129
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        4     11     71
  DEL PEAK  8(4P16.3) WILD-TYPE      4    205    210
D57V10, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                          11                           205
  CLUS_3                          71                           210
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       48      9     20
  DEL PEAK  8(4P16.3) WILD-TYPE    127    108     70
D57V11, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          48                           127
  CLUS_2                           9                           108
  CLUS_3                          20                            70
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        7     59     11
  DEL PEAK  8(4P16.3) WILD-TYPE     23    139    143
D57V12, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          59                           139
  CLUS_3                          11                           143

Clustering(58) Variable = DEL PEAK  9(4P15.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED        1      6      0      0
  DEL PEAK  9(4P15.31) WILD-TYPE     13     11     12     10
D58V1, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED        1      0      6
  DEL PEAK  9(4P15.31) WILD-TYPE     18     19      9
D58V2, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            6                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.31) MUTATED        3     13     76      1      2
  DEL PEAK  9(4P15.31) WILD-TYPE    302     35     78     11      3
D58V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       60     18      6
  DEL PEAK  9(4P15.31) WILD-TYPE     92     76    158
D58V4, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           60                             92
  CLUS_2                           18                             76
  CLUS_3                            6                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P15.31) MUTATED        5      8      0      1      2      5
  DEL PEAK  9(4P15.31) WILD-TYPE     36     29     39     11     39     19
D58V5, multiclass
D58V6, binary
                                cls
clus                               0   1
  DEL PEAK  9(4P15.31) MUTATED    11  10
  DEL PEAK  9(4P15.31) WILD-TYPE 110  63
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(4P15.31) MUTATED     11   10
  DEL PEAK  9(4P15.31) WILD-TYPE  110   63
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           11                            110
  CLUS_2                           10                             63
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       81      6      8
  DEL PEAK  9(4P15.31) WILD-TYPE    143    144    137
D58V7, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           81                            143
  CLUS_2                            6                            144
  CLUS_3                            8                            137
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED        8      6     81
  DEL PEAK  9(4P15.31) WILD-TYPE    139    126    159
D58V8, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            8                            139
  CLUS_2                            6                            126
  CLUS_3                           81                            159
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       72      8     11
  DEL PEAK  9(4P15.31) WILD-TYPE    133    151    130
D58V9, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           72                            133
  CLUS_2                            8                            151
  CLUS_3                           11                            130
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED        4      9     78
  DEL PEAK  9(4P15.31) WILD-TYPE      4    207    203
D58V10, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                            9                            207
  CLUS_3                           78                            203
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       55      8     19
  DEL PEAK  9(4P15.31) WILD-TYPE    120    109     71
D58V11, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           55                            120
  CLUS_2                            8                            109
  CLUS_3                           19                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED        6     66     10
  DEL PEAK  9(4P15.31) WILD-TYPE     24    132    144
D58V12, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           66                            132
  CLUS_3                           10                            144

Clustering(59) Variable = DEL PEAK 10(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED        1      7      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     13     10     12     10
D59V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED        1      0      7
  DEL PEAK 10(4Q22.1) WILD-TYPE     18     19      8
D59V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           0                            19
  CLUS_3                           7                             8
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED        2      9     88      1      2
  DEL PEAK 10(4Q22.1) WILD-TYPE    303     39     66     11      3
D59V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       64     19      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     88     75    159
D59V4, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          64                            88
  CLUS_2                          19                            75
  CLUS_3                           5                           159
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED        6      8      1      1      1      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     35     29     38     11     40     19
D59V5, multiclass
D59V6, binary
                               cls
clus                              0   1
  DEL PEAK 10(4Q22.1) MUTATED    10  12
  DEL PEAK 10(4Q22.1) WILD-TYPE 111  61
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q22.1) MUTATED     10   12
  DEL PEAK 10(4Q22.1) WILD-TYPE  111   61
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          10                           111
  CLUS_2                          12                            61
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       90      6      6
  DEL PEAK 10(4Q22.1) WILD-TYPE    134    144    139
D59V7, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          90                           134
  CLUS_2                           6                           144
  CLUS_3                           6                           139
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED        7      5     90
  DEL PEAK 10(4Q22.1) WILD-TYPE    140    127    150
D59V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           7                           140
  CLUS_2                           5                           127
  CLUS_3                          90                           150
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       81      7     10
  DEL PEAK 10(4Q22.1) WILD-TYPE    124    152    131
D59V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          81                           124
  CLUS_2                           7                           152
  CLUS_3                          10                           131
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED        4      7     87
  DEL PEAK 10(4Q22.1) WILD-TYPE      4    209    194
D59V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           4                             4
  CLUS_2                           7                           209
  CLUS_3                          87                           194
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       56      6     25
  DEL PEAK 10(4Q22.1) WILD-TYPE    119    111     65
D59V11, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          56                           119
  CLUS_2                           6                           111
  CLUS_3                          25                            65
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED        6     73      8
  DEL PEAK 10(4Q22.1) WILD-TYPE     24    125    146
D59V12, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          73                           125
  CLUS_3                           8                           146

Clustering(60) Variable = DEL PEAK 11(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        1      7      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     13     10     12     10
D60V1, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED        1      0      7
  DEL PEAK 11(4Q34.3) WILD-TYPE     18     19      8
D60V2, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           0                            19
  CLUS_3                           7                             8
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED        6     10    106      1      2
  DEL PEAK 11(4Q34.3) WILD-TYPE    299     38     48     11      3
D60V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       72     26     11
  DEL PEAK 11(4Q34.3) WILD-TYPE     80     68    153
D60V4, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          72                            80
  CLUS_2                          26                            68
  CLUS_3                          11                           153
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED        6     10      2      1      3      5
  DEL PEAK 11(4Q34.3) WILD-TYPE     35     27     37     11     38     19
D60V5, multiclass
D60V6, binary
                               cls
clus                              0   1
  DEL PEAK 11(4Q34.3) MUTATED    15  12
  DEL PEAK 11(4Q34.3) WILD-TYPE 106  61
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(4Q34.3) MUTATED     15   12
  DEL PEAK 11(4Q34.3) WILD-TYPE  106   61
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          15                           106
  CLUS_2                          12                            61
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED      109      9      7
  DEL PEAK 11(4Q34.3) WILD-TYPE    115    141    138
D60V7, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                         109                           115
  CLUS_2                           9                           141
  CLUS_3                           7                           138
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED        8      7    110
  DEL PEAK 11(4Q34.3) WILD-TYPE    139    125    130
D60V8, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           8                           139
  CLUS_2                           7                           125
  CLUS_3                         110                           130
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       91      8     20
  DEL PEAK 11(4Q34.3) WILD-TYPE    114    151    121
D60V9, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          91                           114
  CLUS_2                           8                           151
  CLUS_3                          20                           121
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED        5     12    102
  DEL PEAK 11(4Q34.3) WILD-TYPE      3    204    179
D60V10, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                          12                           204
  CLUS_3                         102                           179
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       67      9     29
  DEL PEAK 11(4Q34.3) WILD-TYPE    108    108     61
D60V11, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          67                           108
  CLUS_2                           9                           108
  CLUS_3                          29                            61
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED        8     86     11
  DEL PEAK 11(4Q34.3) WILD-TYPE     22    112    143
D60V12, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                          86                           112
  CLUS_3                          11                           143

Clustering(61) Variable = DEL PEAK 12(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q11.2) MUTATED        1      6      0      0
  DEL PEAK 12(5Q11.2) WILD-TYPE     13     11     12     10
D61V1, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED        1      0      6
  DEL PEAK 12(5Q11.2) WILD-TYPE     18     19      9
D61V2, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           1                            18
  CLUS_2                           0                            19
  CLUS_3                           6                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q11.2) MUTATED        0     12     92      1      1
  DEL PEAK 12(5Q11.2) WILD-TYPE    305     36     62     11      4
D61V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       66     18      8
  DEL PEAK 12(5Q11.2) WILD-TYPE     86     76    156
D61V4, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          66                            86
  CLUS_2                          18                            76
  CLUS_3                           8                           156
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q11.2) MUTATED        6      9      1      0      0      6
  DEL PEAK 12(5Q11.2) WILD-TYPE     35     28     38     12     41     18
D61V5, multiclass
D61V6, binary
                               cls
clus                              0   1
  DEL PEAK 12(5Q11.2) MUTATED     8  14
  DEL PEAK 12(5Q11.2) WILD-TYPE 113  59
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(5Q11.2) MUTATED      8   14
  DEL PEAK 12(5Q11.2) WILD-TYPE  113   59
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           8                           113
  CLUS_2                          14                            59
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       91      5      9
  DEL PEAK 12(5Q11.2) WILD-TYPE    133    145    136
D61V7, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          91                           133
  CLUS_2                           5                           145
  CLUS_3                           9                           136
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       11      3     91
  DEL PEAK 12(5Q11.2) WILD-TYPE    136    129    149
D61V8, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          11                           136
  CLUS_2                           3                           129
  CLUS_3                          91                           149
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       83     10     12
  DEL PEAK 12(5Q11.2) WILD-TYPE    122    149    129
D61V9, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          83                           122
  CLUS_2                          10                           149
  CLUS_3                          12                           129
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED        3     13     89
  DEL PEAK 12(5Q11.2) WILD-TYPE      5    203    192
D61V10, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                          13                           203
  CLUS_3                          89                           192
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       62     11     18
  DEL PEAK 12(5Q11.2) WILD-TYPE    113    106     72
D61V11, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          62                           113
  CLUS_2                          11                           106
  CLUS_3                          18                            72
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED        6     72     13
  DEL PEAK 12(5Q11.2) WILD-TYPE     24    126    141
D61V12, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          72                           126
  CLUS_3                          13                           141

Clustering(62) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     13     14     12     10
D62V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                          14
  CLUS_3                         0                          12
  CLUS_4                         0                          10
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        1      0      3
  DEL PEAK 13(6Q26) WILD-TYPE     18     19     12
D62V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          18
  CLUS_2                         0                          19
  CLUS_3                         3                          12
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        4      4     37      0      0
  DEL PEAK 13(6Q26) WILD-TYPE    301     44    117     12      5
D62V3, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       27     11      1
  DEL PEAK 13(6Q26) WILD-TYPE    125     83    163
D62V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        27                         125
  CLUS_2                        11                          83
  CLUS_3                         1                         163
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED        2      3      1      0      1      2
  DEL PEAK 13(6Q26) WILD-TYPE     39     34     38     12     40     22
D62V5, multiclass
D62V6, binary
                             cls
clus                            0   1
  DEL PEAK 13(6Q26) MUTATED     4   5
  DEL PEAK 13(6Q26) WILD-TYPE 117  68
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED      4    5
  DEL PEAK 13(6Q26) WILD-TYPE  117   68
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                         117
  CLUS_2                         5                          68
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       41      2      2
  DEL PEAK 13(6Q26) WILD-TYPE    183    148    143
D62V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        41                         183
  CLUS_2                         2                         148
  CLUS_3                         2                         143
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        2      2     41
  DEL PEAK 13(6Q26) WILD-TYPE    145    130    199
D62V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                         145
  CLUS_2                         2                         130
  CLUS_3                        41                         199
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       35      2      6
  DEL PEAK 13(6Q26) WILD-TYPE    170    157    135
D62V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        35                         170
  CLUS_2                         2                         157
  CLUS_3                         6                         135
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        1      2     40
  DEL PEAK 13(6Q26) WILD-TYPE      7    214    241
D62V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                           7
  CLUS_2                         2                         214
  CLUS_3                        40                         241
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       23      2     13
  DEL PEAK 13(6Q26) WILD-TYPE    152    115     77
D62V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        23                         152
  CLUS_2                         2                         115
  CLUS_3                        13                          77
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        2     32      4
  DEL PEAK 13(6Q26) WILD-TYPE     28    166    150
D62V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          28
  CLUS_2                        32                         166
  CLUS_3                         4                         150

Clustering(63) Variable = DEL PEAK 14(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        0      7      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     14     10     12     10
D63V1, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        0      0      7
  DEL PEAK 14(7P22.3) WILD-TYPE     19     19      8
D63V2, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           7                             8
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED        4      2     63      0      1
  DEL PEAK 14(7P22.3) WILD-TYPE    301     46     91     12      4
D63V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       42     15      4
  DEL PEAK 14(7P22.3) WILD-TYPE    110     79    160
D63V4, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          42                           110
  CLUS_2                          15                            79
  CLUS_3                           4                           160
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED        5      5      0      1      0      4
  DEL PEAK 14(7P22.3) WILD-TYPE     36     32     39     11     41     20
D63V5, multiclass
D63V6, binary
                               cls
clus                              0   1
  DEL PEAK 14(7P22.3) MUTATED     6   9
  DEL PEAK 14(7P22.3) WILD-TYPE 115  64
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7P22.3) MUTATED      6    9
  DEL PEAK 14(7P22.3) WILD-TYPE  115   64
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                           9                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       64      2      4
  DEL PEAK 14(7P22.3) WILD-TYPE    160    148    141
D63V7, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          64                           160
  CLUS_2                           2                           148
  CLUS_3                           4                           141
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        4      2     64
  DEL PEAK 14(7P22.3) WILD-TYPE    143    130    176
D63V8, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           4                           143
  CLUS_2                           2                           130
  CLUS_3                          64                           176
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       56      5      7
  DEL PEAK 14(7P22.3) WILD-TYPE    149    154    134
D63V9, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          56                           149
  CLUS_2                           5                           154
  CLUS_3                           7                           134
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        1      7     60
  DEL PEAK 14(7P22.3) WILD-TYPE      7    209    221
D63V10, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           7                           209
  CLUS_3                          60                           221
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       36      4     17
  DEL PEAK 14(7P22.3) WILD-TYPE    139    113     73
D63V11, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          36                           139
  CLUS_2                           4                           113
  CLUS_3                          17                            73
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        3     49      5
  DEL PEAK 14(7P22.3) WILD-TYPE     27    149    149
D63V12, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          49                           149
  CLUS_3                           5                           149

Clustering(64) Variable = DEL PEAK 15(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        0      2      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     14     15     12     10
D64V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        0      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE     19     19     13
D64V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED        0      0     40      0      1
  DEL PEAK 15(7Q11.22) WILD-TYPE    305     48    114     12      4
D64V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       26      9      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    126     85    161
D64V4, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           26                            126
  CLUS_2                            9                             85
  CLUS_3                            3                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(7Q11.22) MUTATED        5      3      0      0      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE     36     34     39     12     41     22
D64V5, multiclass
D64V6, binary
                                cls
clus                               0   1
  DEL PEAK 15(7Q11.22) MUTATED     2   8
  DEL PEAK 15(7Q11.22) WILD-TYPE 119  65
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(7Q11.22) MUTATED      2    8
  DEL PEAK 15(7Q11.22) WILD-TYPE  119   65
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            2                            119
  CLUS_2                            8                             65
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       39      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE    185    150    143
D64V7, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           39                            185
  CLUS_2                            0                            150
  CLUS_3                            2                            143
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        3      0     38
  DEL PEAK 15(7Q11.22) WILD-TYPE    144    132    202
D64V8, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            3                            144
  CLUS_2                            0                            132
  CLUS_3                           38                            202
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       33      3      4
  DEL PEAK 15(7Q11.22) WILD-TYPE    172    156    137
D64V9, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           33                            172
  CLUS_2                            3                            156
  CLUS_3                            4                            137
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        1      4     35
  DEL PEAK 15(7Q11.22) WILD-TYPE      7    212    246
D64V10, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            4                            212
  CLUS_3                           35                            246
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       25      3      8
  DEL PEAK 15(7Q11.22) WILD-TYPE    150    114     82
D64V11, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           25                            150
  CLUS_2                            3                            114
  CLUS_3                            8                             82
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        1     31      4
  DEL PEAK 15(7Q11.22) WILD-TYPE     29    167    150
D64V12, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                           31                            167
  CLUS_3                            4                            150

Clustering(65) Variable = DEL PEAK 16(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        0      3      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     14     14     12     10
D65V1, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           3                            14
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        0      0      3
  DEL PEAK 16(7Q31.1) WILD-TYPE     19     19     12
D65V2, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           3                            12
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED        0      0     52      0      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    305     48    102     12      4
D65V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       35     12      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    117     82    163
D65V4, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          35                           117
  CLUS_2                          12                            82
  CLUS_3                           1                           163
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(7Q31.1) MUTATED        4      5      1      0      0      3
  DEL PEAK 16(7Q31.1) WILD-TYPE     37     32     38     12     41     21
D65V5, multiclass
D65V6, binary
                               cls
clus                              0   1
  DEL PEAK 16(7Q31.1) MUTATED     4   9
  DEL PEAK 16(7Q31.1) WILD-TYPE 117  64
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(7Q31.1) MUTATED      4    9
  DEL PEAK 16(7Q31.1) WILD-TYPE  117   64
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                           9                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       52      0      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    172    150    144
D65V7, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          52                           172
  CLUS_2                           0                           150
  CLUS_3                           1                           144
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        2      0     51
  DEL PEAK 16(7Q31.1) WILD-TYPE    145    132    189
D65V8, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           2                           145
  CLUS_2                           0                           132
  CLUS_3                          51                           189
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       44      3      4
  DEL PEAK 16(7Q31.1) WILD-TYPE    161    156    137
D65V9, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          44                           161
  CLUS_2                           3                           156
  CLUS_3                           4                           137
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        1      4     46
  DEL PEAK 16(7Q31.1) WILD-TYPE      7    212    235
D65V10, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           1                             7
  CLUS_2                           4                           212
  CLUS_3                          46                           235
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       30      3     11
  DEL PEAK 16(7Q31.1) WILD-TYPE    145    114     79
D65V11, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          30                           145
  CLUS_2                           3                           114
  CLUS_3                          11                            79
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        0     40      4
  DEL PEAK 16(7Q31.1) WILD-TYPE     30    158    150
D65V12, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                            30
  CLUS_2                          40                           158
  CLUS_3                           4                           150

Clustering(66) Variable = DEL PEAK 17(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED        1      4      1      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     13     13     11     10
D66V1, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           1                            11
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        2      0      4
  DEL PEAK 17(7Q36.1) WILD-TYPE     17     19     11
D66V2, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           2                            17
  CLUS_2                           0                            19
  CLUS_3                           4                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED        1      1     59      0      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    304     47     95     12      4
D66V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       38     14      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    114     80    163
D66V4, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          38                           114
  CLUS_2                          14                            80
  CLUS_3                           1                           163
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q36.1) MUTATED        5      7      1      0      0      3
  DEL PEAK 17(7Q36.1) WILD-TYPE     36     30     38     12     41     21
D66V5, multiclass
D66V6, binary
                               cls
clus                              0   1
  DEL PEAK 17(7Q36.1) MUTATED     4  12
  DEL PEAK 17(7Q36.1) WILD-TYPE 117  61
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(7Q36.1) MUTATED      4   12
  DEL PEAK 17(7Q36.1) WILD-TYPE  117   61
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                          12                            61
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       61      0      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    163    150    144
D66V7, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          61                           163
  CLUS_2                           0                           150
  CLUS_3                           1                           144
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        2      0     60
  DEL PEAK 17(7Q36.1) WILD-TYPE    145    132    180
D66V8, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           2                           145
  CLUS_2                           0                           132
  CLUS_3                          60                           180
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       54      3      3
  DEL PEAK 17(7Q36.1) WILD-TYPE    151    156    138
D66V9, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          54                           151
  CLUS_2                           3                           156
  CLUS_3                           3                           138
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        0      4     56
  DEL PEAK 17(7Q36.1) WILD-TYPE      8    212    225
D66V10, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           0                             8
  CLUS_2                           4                           212
  CLUS_3                          56                           225
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       34      3     12
  DEL PEAK 17(7Q36.1) WILD-TYPE    141    114     78
D66V11, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          34                           141
  CLUS_2                           3                           114
  CLUS_3                          12                            78
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        0     46      3
  DEL PEAK 17(7Q36.1) WILD-TYPE     30    152    151
D66V12, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           0                            30
  CLUS_2                          46                           152
  CLUS_3                           3                           151

Clustering(67) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     14     11     12     10
D67V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        0      0      6
  DEL PEAK 18(8P23.2) WILD-TYPE     19     19      9
D67V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           6                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED        8      7     97      0      1
  DEL PEAK 18(8P23.2) WILD-TYPE    297     41     57     12      4
D67V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       72     22      5
  DEL PEAK 18(8P23.2) WILD-TYPE     80     72    159
D67V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          72                            80
  CLUS_2                          22                            72
  CLUS_3                           5                           159
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED        7      4      4      1      1      7
  DEL PEAK 18(8P23.2) WILD-TYPE     34     33     35     11     40     17
D67V5, multiclass
D67V6, binary
                               cls
clus                              0   1
  DEL PEAK 18(8P23.2) MUTATED    13  11
  DEL PEAK 18(8P23.2) WILD-TYPE 108  62
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) MUTATED     13   11
  DEL PEAK 18(8P23.2) WILD-TYPE  108   62
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          13                           108
  CLUS_2                          11                            62
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED      102      6      4
  DEL PEAK 18(8P23.2) WILD-TYPE    122    144    141
D67V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         102                           122
  CLUS_2                           6                           144
  CLUS_3                           4                           141
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        6      5    101
  DEL PEAK 18(8P23.2) WILD-TYPE    141    127    139
D67V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           6                           141
  CLUS_2                           5                           127
  CLUS_3                         101                           139
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       92      8      7
  DEL PEAK 18(8P23.2) WILD-TYPE    113    151    134
D67V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          92                           113
  CLUS_2                           8                           151
  CLUS_3                           7                           134
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        3      9     95
  DEL PEAK 18(8P23.2) WILD-TYPE      5    207    186
D67V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           3                             5
  CLUS_2                           9                           207
  CLUS_3                          95                           186
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       65      4     22
  DEL PEAK 18(8P23.2) WILD-TYPE    110    113     68
D67V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          65                           110
  CLUS_2                           4                           113
  CLUS_3                          22                            68
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        4     80      7
  DEL PEAK 18(8P23.2) WILD-TYPE     26    118    147
D67V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          80                           118
  CLUS_3                           7                           147

Clustering(68) Variable = DEL PEAK 19(8P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     14     11     12     10
D68V1, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED        0      0      6
  DEL PEAK 19(8P21.2) WILD-TYPE     19     19      9
D68V2, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           6                             9
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED        5      5    100      0      1
  DEL PEAK 19(8P21.2) WILD-TYPE    300     43     54     12      4
D68V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       75     20      2
  DEL PEAK 19(8P21.2) WILD-TYPE     77     74    162
D68V4, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          75                            77
  CLUS_2                          20                            74
  CLUS_3                           2                           162
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P21.2) MUTATED        7      5      3      0      1      7
  DEL PEAK 19(8P21.2) WILD-TYPE     34     32     36     12     40     17
D68V5, multiclass
D68V6, binary
                               cls
clus                              0   1
  DEL PEAK 19(8P21.2) MUTATED    11  12
  DEL PEAK 19(8P21.2) WILD-TYPE 110  61
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8P21.2) MUTATED     11   12
  DEL PEAK 19(8P21.2) WILD-TYPE  110   61
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          11                           110
  CLUS_2                          12                            61
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED      104      5      1
  DEL PEAK 19(8P21.2) WILD-TYPE    120    145    144
D68V7, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         104                           120
  CLUS_2                           5                           145
  CLUS_3                           1                           144
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED        3      4    103
  DEL PEAK 19(8P21.2) WILD-TYPE    144    128    137
D68V8, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           3                           144
  CLUS_2                           4                           128
  CLUS_3                         103                           137
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       94      4      7
  DEL PEAK 19(8P21.2) WILD-TYPE    111    155    134
D68V9, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          94                           111
  CLUS_2                           4                           155
  CLUS_3                           7                           134
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED        2      6     97
  DEL PEAK 19(8P21.2) WILD-TYPE      6    210    184
D68V10, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           2                             6
  CLUS_2                           6                           210
  CLUS_3                          97                           184
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       66      1     23
  DEL PEAK 19(8P21.2) WILD-TYPE    109    116     67
D68V11, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          66                           109
  CLUS_2                           1                           116
  CLUS_3                          23                            67
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED        4     82      4
  DEL PEAK 19(8P21.2) WILD-TYPE     26    116    150
D68V12, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          82                           116
  CLUS_3                           4                           150

Clustering(69) Variable = DEL PEAK 20(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        1      3      0      0
  DEL PEAK 20(9P23) WILD-TYPE     13     14     12     10
D69V1, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                          14
  CLUS_3                         0                          12
  CLUS_4                         0                          10
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED        1      0      3
  DEL PEAK 20(9P23) WILD-TYPE     18     19     12
D69V2, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          18
  CLUS_2                         0                          19
  CLUS_3                         3                          12
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED        2     13     59      0      1
  DEL PEAK 20(9P23) WILD-TYPE    303     35     95     12      4
D69V3, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       37     21      8
  DEL PEAK 20(9P23) WILD-TYPE    115     73    156
D69V4, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        37                         115
  CLUS_2                        21                          73
  CLUS_3                         8                         156
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9P23) MUTATED        4      5      1      1      0      5
  DEL PEAK 20(9P23) WILD-TYPE     37     32     38     11     41     19
D69V5, multiclass
D69V6, binary
                             cls
clus                            0   1
  DEL PEAK 20(9P23) MUTATED     8   8
  DEL PEAK 20(9P23) WILD-TYPE 113  65
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 20(9P23) MUTATED      8    8
  DEL PEAK 20(9P23) WILD-TYPE  113   65
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         8                         113
  CLUS_2                         8                          65
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       59      5     11
  DEL PEAK 20(9P23) WILD-TYPE    165    145    134
D69V7, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        59                         165
  CLUS_2                         5                         145
  CLUS_3                        11                         134
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       12      4     59
  DEL PEAK 20(9P23) WILD-TYPE    135    128    181
D69V8, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        12                         135
  CLUS_2                         4                         128
  CLUS_3                        59                         181
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       50     14      7
  DEL PEAK 20(9P23) WILD-TYPE    155    145    134
D69V9, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        50                         155
  CLUS_2                        14                         145
  CLUS_3                         7                         134
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED        1     14     56
  DEL PEAK 20(9P23) WILD-TYPE      7    202    225
D69V10, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                           7
  CLUS_2                        14                         202
  CLUS_3                        56                         225
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       38     11     13
  DEL PEAK 20(9P23) WILD-TYPE    137    106     77
D69V11, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        38                         137
  CLUS_2                        11                         106
  CLUS_3                        13                          77
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED        4     46     12
  DEL PEAK 20(9P23) WILD-TYPE     26    152    142
D69V12, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         4                          26
  CLUS_2                        46                         152
  CLUS_3                        12                         142

Clustering(70) Variable = DEL PEAK 21(9Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED        0      9      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     14      8     12     10
D70V1, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           9                             8
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED        0      0      9
  DEL PEAK 21(9Q21.2) WILD-TYPE     19     19      6
D70V2, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           9                             6
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED        3     19    100      0      1
  DEL PEAK 21(9Q21.2) WILD-TYPE    302     29     54     12      4
D70V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       68     24     15
  DEL PEAK 21(9Q21.2) WILD-TYPE     84     70    149
D70V4, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          68                            84
  CLUS_2                          24                            70
  CLUS_3                          15                           149
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9Q21.2) MUTATED        6     12      1      2      1      6
  DEL PEAK 21(9Q21.2) WILD-TYPE     35     25     38     10     40     18
D70V5, multiclass
D70V6, binary
                               cls
clus                              0   1
  DEL PEAK 21(9Q21.2) MUTATED    14  14
  DEL PEAK 21(9Q21.2) WILD-TYPE 107  59
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 21(9Q21.2) MUTATED     14   14
  DEL PEAK 21(9Q21.2) WILD-TYPE  107   59
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          14                           107
  CLUS_2                          14                            59
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       99      8     16
  DEL PEAK 21(9Q21.2) WILD-TYPE    125    142    129
D70V7, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          99                           125
  CLUS_2                           8                           142
  CLUS_3                          16                           129
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       17      7     99
  DEL PEAK 21(9Q21.2) WILD-TYPE    130    125    141
D70V8, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                           7                           125
  CLUS_3                          99                           141
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       88     18     13
  DEL PEAK 21(9Q21.2) WILD-TYPE    117    141    128
D70V9, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          88                           117
  CLUS_2                          18                           141
  CLUS_3                          13                           128
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED        5     21     93
  DEL PEAK 21(9Q21.2) WILD-TYPE      3    195    188
D70V10, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                          21                           195
  CLUS_3                          93                           188
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       61     17     26
  DEL PEAK 21(9Q21.2) WILD-TYPE    114    100     64
D70V11, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          61                           114
  CLUS_2                          17                           100
  CLUS_3                          26                            64
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED        5     78     21
  DEL PEAK 21(9Q21.2) WILD-TYPE     25    120    133
D70V12, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          78                           120
  CLUS_3                          21                           133

Clustering(71) Variable = DEL PEAK 22(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED        0      9      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     14      8     12     10
D71V1, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           9                             8
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED        0      0      9
  DEL PEAK 22(9Q34.2) WILD-TYPE     19     19      6
D71V2, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           9                             6
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED        4     19    105      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE    301     29     49     12      5
D71V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       70     27     13
  DEL PEAK 22(9Q34.2) WILD-TYPE     82     67    151
D71V4, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          70                            82
  CLUS_2                          27                            67
  CLUS_3                          13                           151
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9Q34.2) MUTATED        7     13      2      2      1      6
  DEL PEAK 22(9Q34.2) WILD-TYPE     34     24     37     10     40     18
D71V5, multiclass
D71V6, binary
                               cls
clus                              0   1
  DEL PEAK 22(9Q34.2) MUTATED    14  17
  DEL PEAK 22(9Q34.2) WILD-TYPE 107  56
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 22(9Q34.2) MUTATED     14   17
  DEL PEAK 22(9Q34.2) WILD-TYPE  107   56
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          14                           107
  CLUS_2                          17                            56
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED      102      9     16
  DEL PEAK 22(9Q34.2) WILD-TYPE    122    141    129
D71V7, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                         102                           122
  CLUS_2                           9                           141
  CLUS_3                          16                           129
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       17      8    102
  DEL PEAK 22(9Q34.2) WILD-TYPE    130    124    138
D71V8, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          17                           130
  CLUS_2                           8                           124
  CLUS_3                         102                           138
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       92     19     13
  DEL PEAK 22(9Q34.2) WILD-TYPE    113    140    128
D71V9, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          92                           113
  CLUS_2                          19                           140
  CLUS_3                          13                           128
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED        5     24     95
  DEL PEAK 22(9Q34.2) WILD-TYPE      3    192    186
D71V10, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                          24                           192
  CLUS_3                          95                           186
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       66     17     24
  DEL PEAK 22(9Q34.2) WILD-TYPE    109    100     66
D71V11, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          66                           109
  CLUS_2                          17                           100
  CLUS_3                          24                            66
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED        8     78     21
  DEL PEAK 22(9Q34.2) WILD-TYPE     22    120    133
D71V12, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                          78                           120
  CLUS_3                          21                           133

Clustering(72) Variable = DEL PEAK 23(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        0      3      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     14     14     12     10
D72V1, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             3                              14
  CLUS_3                             0                              12
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED        0      0      3
  DEL PEAK 23(10Q23.31) WILD-TYPE     19     19     12
D72V2, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             0                              19
  CLUS_2                             0                              19
  CLUS_3                             3                              12
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q23.31) MUTATED        5      4     64      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE    300     44     90     12      5
D72V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       41     17      6
  DEL PEAK 23(10Q23.31) WILD-TYPE    111     77    158
D72V4, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            41                             111
  CLUS_2                            17                              77
  CLUS_3                             6                             158
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q23.31) MUTATED        4      7      3      1      0      2
  DEL PEAK 23(10Q23.31) WILD-TYPE     37     30     36     11     41     22
D72V5, multiclass
D72V6, binary
                                 cls
clus                                0   1
  DEL PEAK 23(10Q23.31) MUTATED    10   7
  DEL PEAK 23(10Q23.31) WILD-TYPE 111  66
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(10Q23.31) MUTATED     10    7
  DEL PEAK 23(10Q23.31) WILD-TYPE  111   66
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            10                             111
  CLUS_2                             7                              66
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       60      5      7
  DEL PEAK 23(10Q23.31) WILD-TYPE    164    145    138
D72V7, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            60                             164
  CLUS_2                             5                             145
  CLUS_3                             7                             138
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED        8      4     60
  DEL PEAK 23(10Q23.31) WILD-TYPE    139    128    180
D72V8, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             8                             139
  CLUS_2                             4                             128
  CLUS_3                            60                             180
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       56      8      7
  DEL PEAK 23(10Q23.31) WILD-TYPE    149    151    134
D72V9, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            56                             149
  CLUS_2                             8                             151
  CLUS_3                             7                             134
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED        2     12     57
  DEL PEAK 23(10Q23.31) WILD-TYPE      6    204    224
D72V10, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             2                               6
  CLUS_2                            12                             204
  CLUS_3                            57                             224
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       40      7     15
  DEL PEAK 23(10Q23.31) WILD-TYPE    135    110     75
D72V11, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            40                             135
  CLUS_2                             7                             110
  CLUS_3                            15                              75
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED        6     48      8
  DEL PEAK 23(10Q23.31) WILD-TYPE     24    150    146
D72V12, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             6                              24
  CLUS_2                            48                             150
  CLUS_3                             8                             146

Clustering(73) Variable = DEL PEAK 24(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED        1      3      0      0
  DEL PEAK 24(11P15.5) WILD-TYPE     13     14     12     10
D73V1, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED        1      0      3
  DEL PEAK 24(11P15.5) WILD-TYPE     18     19     12
D73V2, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            3                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11P15.5) MUTATED        1     13     83      0      2
  DEL PEAK 24(11P15.5) WILD-TYPE    304     35     71     12      3
D73V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       61     23      6
  DEL PEAK 24(11P15.5) WILD-TYPE     91     71    158
D73V4, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           61                             91
  CLUS_2                           23                             71
  CLUS_3                            6                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11P15.5) MUTATED        4      6      2      0      2      4
  DEL PEAK 24(11P15.5) WILD-TYPE     37     31     37     12     39     20
D73V5, multiclass
D73V6, binary
                                cls
clus                               0   1
  DEL PEAK 24(11P15.5) MUTATED     9   9
  DEL PEAK 24(11P15.5) WILD-TYPE 112  64
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11P15.5) MUTATED      9    9
  DEL PEAK 24(11P15.5) WILD-TYPE  112   64
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            9                            112
  CLUS_2                            9                             64
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       83      4     11
  DEL PEAK 24(11P15.5) WILD-TYPE    141    146    134
D73V7, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           83                            141
  CLUS_2                            4                            146
  CLUS_3                           11                            134
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       13      3     82
  DEL PEAK 24(11P15.5) WILD-TYPE    134    129    158
D73V8, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           13                            134
  CLUS_2                            3                            129
  CLUS_3                           82                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       73     13     10
  DEL PEAK 24(11P15.5) WILD-TYPE    132    146    131
D73V9, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           73                            132
  CLUS_2                           13                            146
  CLUS_3                           10                            131
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED        3     17     76
  DEL PEAK 24(11P15.5) WILD-TYPE      5    199    205
D73V10, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                           17                            199
  CLUS_3                           76                            205
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       61     12     16
  DEL PEAK 24(11P15.5) WILD-TYPE    114    105     74
D73V11, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           61                            114
  CLUS_2                           12                            105
  CLUS_3                           16                             74
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED        4     70     15
  DEL PEAK 24(11P15.5) WILD-TYPE     26    128    139
D73V12, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           70                            128
  CLUS_3                           15                            139

Clustering(74) Variable = DEL PEAK 25(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        0      1      0      0
  DEL PEAK 25(11Q14.1) WILD-TYPE     14     16     12     10
D74V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(11Q14.1) MUTATED"
clus
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED        0      0      1
  DEL PEAK 25(11Q14.1) WILD-TYPE     19     19     14
D74V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(11Q14.1) MUTATED"
clus
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q14.1) MUTATED        1     12     51      0      2
  DEL PEAK 25(11Q14.1) WILD-TYPE    304     36    103     12      3
D74V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       43     14      5
  DEL PEAK 25(11Q14.1) WILD-TYPE    109     80    159
D74V4, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           43                            109
  CLUS_2                           14                             80
  CLUS_3                            5                            159
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q14.1) MUTATED        3      4      2      0      1      3
  DEL PEAK 25(11Q14.1) WILD-TYPE     38     33     37     12     40     21
D74V5, multiclass
D74V6, binary
                                cls
clus                               0   1
  DEL PEAK 25(11Q14.1) MUTATED     6   7
  DEL PEAK 25(11Q14.1) WILD-TYPE 115  66
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(11Q14.1) MUTATED      6    7
  DEL PEAK 25(11Q14.1) WILD-TYPE  115   66
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            6                            115
  CLUS_2                            7                             66
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       56      2      7
  DEL PEAK 25(11Q14.1) WILD-TYPE    168    148    138
D74V7, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           56                            168
  CLUS_2                            2                            148
  CLUS_3                            7                            138
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED        7      2     56
  DEL PEAK 25(11Q14.1) WILD-TYPE    140    130    184
D74V8, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            7                            140
  CLUS_2                            2                            130
  CLUS_3                           56                            184
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       51      8      6
  DEL PEAK 25(11Q14.1) WILD-TYPE    154    151    135
D74V9, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           51                            154
  CLUS_2                            8                            151
  CLUS_3                            6                            135
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED        1      7     57
  DEL PEAK 25(11Q14.1) WILD-TYPE      7    209    224
D74V10, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            1                              7
  CLUS_2                            7                            209
  CLUS_3                           57                            224
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       42      8     11
  DEL PEAK 25(11Q14.1) WILD-TYPE    133    109     79
D74V11, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           42                            133
  CLUS_2                            8                            109
  CLUS_3                           11                             79
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED        0     52      9
  DEL PEAK 25(11Q14.1) WILD-TYPE     30    146    145
D74V12, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            0                             30
  CLUS_2                           52                            146
  CLUS_3                            9                            145

Clustering(75) Variable = DEL PEAK 26(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        0      2      0      0
  DEL PEAK 26(11Q25) WILD-TYPE     14     15     12     10
D75V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 26(11Q25) MUTATED"
clus
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 26(11Q25) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED        0      0      2
  DEL PEAK 26(11Q25) WILD-TYPE     19     19     13
D75V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 26(11Q25) MUTATED"
clus
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 26(11Q25) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q25) MUTATED        4     16     67      0      2
  DEL PEAK 26(11Q25) WILD-TYPE    301     32     87     12      3
D75V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       59     14      7
  DEL PEAK 26(11Q25) WILD-TYPE     93     80    157
D75V4, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         59                           93
  CLUS_2                         14                           80
  CLUS_3                          7                          157
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q25) MUTATED        2      7      4      1      1      4
  DEL PEAK 26(11Q25) WILD-TYPE     39     30     35     11     40     20
D75V5, multiclass
D75V6, binary
                              cls
clus                             0   1
  DEL PEAK 26(11Q25) MUTATED    11   8
  DEL PEAK 26(11Q25) WILD-TYPE 110  65
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 26(11Q25) MUTATED     11    8
  DEL PEAK 26(11Q25) WILD-TYPE  110   65
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         11                          110
  CLUS_2                          8                           65
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       72      7      9
  DEL PEAK 26(11Q25) WILD-TYPE    152    143    136
D75V7, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         72                          152
  CLUS_2                          7                          143
  CLUS_3                          9                          136
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       10      5     73
  DEL PEAK 26(11Q25) WILD-TYPE    137    127    167
D75V8, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         10                          137
  CLUS_2                          5                          127
  CLUS_3                         73                          167
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       63     12     12
  DEL PEAK 26(11Q25) WILD-TYPE    142    147    129
D75V9, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         63                          142
  CLUS_2                         12                          147
  CLUS_3                         12                          129
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED        3     12     72
  DEL PEAK 26(11Q25) WILD-TYPE      5    204    209
D75V10, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          3                            5
  CLUS_2                         12                          204
  CLUS_3                         72                          209
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       53     10     17
  DEL PEAK 26(11Q25) WILD-TYPE    122    107     73
D75V11, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         53                          122
  CLUS_2                         10                          107
  CLUS_3                         17                           73
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED        3     64     13
  DEL PEAK 26(11Q25) WILD-TYPE     27    134    141
D75V12, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          3                           27
  CLUS_2                         64                          134
  CLUS_3                         13                          141

Clustering(76) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        0      2      0      0
  DEL PEAK 27(12Q23.1) WILD-TYPE     14     15     12     10
D76V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 27(12Q23.1) MUTATED"
clus
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 27(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        0      0      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     19     19     13
D76V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 27(12Q23.1) MUTATED"
clus
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 27(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED        0      3     49      1      0
  DEL PEAK 27(12Q23.1) WILD-TYPE    305     45    105     11      5
D76V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       34     11      0
  DEL PEAK 27(12Q23.1) WILD-TYPE    118     83    164
D76V4, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           34                            118
  CLUS_2                           11                             83
  CLUS_3                            0                            164
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED        3      7      2      0      0      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     38     30     37     12     41     22
D76V5, multiclass
D76V6, binary
                                cls
clus                               0   1
  DEL PEAK 27(12Q23.1) MUTATED     4  10
  DEL PEAK 27(12Q23.1) WILD-TYPE 117  63
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(12Q23.1) MUTATED      4   10
  DEL PEAK 27(12Q23.1) WILD-TYPE  117   63
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            4                            117
  CLUS_2                           10                             63
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       48      2      3
  DEL PEAK 27(12Q23.1) WILD-TYPE    176    148    142
D76V7, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           48                            176
  CLUS_2                            2                            148
  CLUS_3                            3                            142
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        5      1     47
  DEL PEAK 27(12Q23.1) WILD-TYPE    142    131    193
D76V8, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            5                            142
  CLUS_2                            1                            131
  CLUS_3                           47                            193
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       44      2      5
  DEL PEAK 27(12Q23.1) WILD-TYPE    161    157    136
D76V9, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           44                            161
  CLUS_2                            2                            157
  CLUS_3                            5                            136
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        0      3     48
  DEL PEAK 27(12Q23.1) WILD-TYPE      8    213    233
D76V10, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            0                              8
  CLUS_2                            3                            213
  CLUS_3                           48                            233
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       32      2     11
  DEL PEAK 27(12Q23.1) WILD-TYPE    143    115     79
D76V11, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           32                            143
  CLUS_2                            2                            115
  CLUS_3                           11                             79
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        5     38      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     25    160    152
D76V12, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           38                            160
  CLUS_3                            2                            152

Clustering(77) Variable = DEL PEAK 28(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        0      2      0      0
  DEL PEAK 28(12Q24.33) WILD-TYPE     14     15     12     10
D77V1, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 28(12Q24.33) MUTATED"
clus
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 28(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED        0      0      2
  DEL PEAK 28(12Q24.33) WILD-TYPE     19     19     13
D77V2, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 28(12Q24.33) MUTATED"
clus
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 28(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.33) MUTATED        1      3     59      1      0
  DEL PEAK 28(12Q24.33) WILD-TYPE    304     45     95     11      5
D77V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       41     14      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    111     80    161
D77V4, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            41                             111
  CLUS_2                            14                              80
  CLUS_3                             3                             161
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.33) MUTATED        1      5      1      0      0      2
  DEL PEAK 28(12Q24.33) WILD-TYPE     40     32     38     12     41     22
D77V5, multiclass
D77V6, binary
                                 cls
clus                                0   1
  DEL PEAK 28(12Q24.33) MUTATED     4   5
  DEL PEAK 28(12Q24.33) WILD-TYPE 117  68
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(12Q24.33) MUTATED      4    5
  DEL PEAK 28(12Q24.33) WILD-TYPE  117   68
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             4                             117
  CLUS_2                             5                              68
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       60      1      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    164    149    142
D77V7, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            60                             164
  CLUS_2                             1                             149
  CLUS_3                             3                             142
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED        3      1     60
  DEL PEAK 28(12Q24.33) WILD-TYPE    144    131    180
D77V8, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             3                             144
  CLUS_2                             1                             131
  CLUS_3                            60                             180
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       51      3      6
  DEL PEAK 28(12Q24.33) WILD-TYPE    154    156    135
D77V9, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            51                             154
  CLUS_2                             3                             156
  CLUS_3                             6                             135
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED        1      6     53
  DEL PEAK 28(12Q24.33) WILD-TYPE      7    210    228
D77V10, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                             6                             210
  CLUS_3                            53                             228
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       43      3     10
  DEL PEAK 28(12Q24.33) WILD-TYPE    132    114     80
D77V11, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            43                             132
  CLUS_2                             3                             114
  CLUS_3                            10                              80
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED        5     46      5
  DEL PEAK 28(12Q24.33) WILD-TYPE     25    152    149
D77V12, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             5                              25
  CLUS_2                            46                             152
  CLUS_3                             5                             149

Clustering(78) Variable = DEL PEAK 29(13Q11) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED        1      4      1      0
  DEL PEAK 29(13Q11) WILD-TYPE     13     13     11     10
D78V1, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          4                           13
  CLUS_3                          1                           11
  CLUS_4                          0                           10
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED        1      1      4
  DEL PEAK 29(13Q11) WILD-TYPE     18     18     11
D78V2, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          1                           18
  CLUS_2                          1                           18
  CLUS_3                          4                           11
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q11) MUTATED        2     19     73      1      1
  DEL PEAK 29(13Q11) WILD-TYPE    303     29     81     11      4
D78V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       51     21     10
  DEL PEAK 29(13Q11) WILD-TYPE    101     73    154
D78V4, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         51                          101
  CLUS_2                         21                           73
  CLUS_3                         10                          154
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q11) MUTATED        4      7      1      0      3      3
  DEL PEAK 29(13Q11) WILD-TYPE     37     30     38     12     38     21
D78V5, multiclass
D78V6, binary
                              cls
clus                             0   1
  DEL PEAK 29(13Q11) MUTATED     8  10
  DEL PEAK 29(13Q11) WILD-TYPE 113  63
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 29(13Q11) MUTATED      8   10
  DEL PEAK 29(13Q11) WILD-TYPE  113   63
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          8                          113
  CLUS_2                         10                           63
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       74      7     15
  DEL PEAK 29(13Q11) WILD-TYPE    150    143    130
D78V7, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         74                          150
  CLUS_2                          7                          143
  CLUS_3                         15                          130
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       17      5     74
  DEL PEAK 29(13Q11) WILD-TYPE    130    127    166
D78V8, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         17                          130
  CLUS_2                          5                          127
  CLUS_3                         74                          166
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       65     13     14
  DEL PEAK 29(13Q11) WILD-TYPE    140    146    127
D78V9, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         65                          140
  CLUS_2                         13                          146
  CLUS_3                         14                          127
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED        5     16     71
  DEL PEAK 29(13Q11) WILD-TYPE      3    200    210
D78V10, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          5                            3
  CLUS_2                         16                          200
  CLUS_3                         71                          210
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       45     14     21
  DEL PEAK 29(13Q11) WILD-TYPE    130    103     69
D78V11, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         45                          130
  CLUS_2                         14                          103
  CLUS_3                         21                           69
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED        3     59     18
  DEL PEAK 29(13Q11) WILD-TYPE     27    139    136
D78V12, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          3                           27
  CLUS_2                         59                          139
  CLUS_3                         18                          136

Clustering(79) Variable = DEL PEAK 30(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED        1      3      1      0
  DEL PEAK 30(13Q14.2) WILD-TYPE     13     14     11     10
D79V1, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED        1      1      3
  DEL PEAK 30(13Q14.2) WILD-TYPE     18     18     12
D79V2, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            1                             18
  CLUS_3                            3                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED        3     21     77      1      1
  DEL PEAK 30(13Q14.2) WILD-TYPE    302     27     77     11      4
D79V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       52     25     13
  DEL PEAK 30(13Q14.2) WILD-TYPE    100     69    151
D79V4, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           52                            100
  CLUS_2                           25                             69
  CLUS_3                           13                            151
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(13Q14.2) MUTATED        5      9      1      1      3      3
  DEL PEAK 30(13Q14.2) WILD-TYPE     36     28     38     11     38     21
D79V5, multiclass
D79V6, binary
                                cls
clus                               0   1
  DEL PEAK 30(13Q14.2) MUTATED    10  12
  DEL PEAK 30(13Q14.2) WILD-TYPE 111  61
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(13Q14.2) MUTATED     10   12
  DEL PEAK 30(13Q14.2) WILD-TYPE  111   61
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                           12                             61
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       77      8     18
  DEL PEAK 30(13Q14.2) WILD-TYPE    147    142    127
D79V7, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           77                            147
  CLUS_2                            8                            142
  CLUS_3                           18                            127
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       20      6     77
  DEL PEAK 30(13Q14.2) WILD-TYPE    127    126    163
D79V8, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           20                            127
  CLUS_2                            6                            126
  CLUS_3                           77                            163
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       64     17     18
  DEL PEAK 30(13Q14.2) WILD-TYPE    141    142    123
D79V9, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           64                            141
  CLUS_2                           17                            142
  CLUS_3                           18                            123
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED        6     20     73
  DEL PEAK 30(13Q14.2) WILD-TYPE      2    196    208
D79V10, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            6                              2
  CLUS_2                           20                            196
  CLUS_3                           73                            208
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       50     19     19
  DEL PEAK 30(13Q14.2) WILD-TYPE    125     98     71
D79V11, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           50                            125
  CLUS_2                           19                             98
  CLUS_3                           19                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED        6     60     22
  DEL PEAK 30(13Q14.2) WILD-TYPE     24    138    132
D79V12, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           60                            138
  CLUS_3                           22                            132

Clustering(80) Variable = DEL PEAK 31(14Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        0      5      0      0
  DEL PEAK 31(14Q13.1) WILD-TYPE     14     12     12     10
D80V1, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED        0      0      5
  DEL PEAK 31(14Q13.1) WILD-TYPE     19     19     10
D80V2, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            0                             19
  CLUS_3                            5                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q13.1) MUTATED        2      6     58      1      2
  DEL PEAK 31(14Q13.1) WILD-TYPE    303     42     96     11      3
D80V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       46      9      5
  DEL PEAK 31(14Q13.1) WILD-TYPE    106     85    159
D80V4, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           46                            106
  CLUS_2                            9                             85
  CLUS_3                            5                            159
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q13.1) MUTATED        2      5      0      0      1      3
  DEL PEAK 31(14Q13.1) WILD-TYPE     39     32     39     12     40     21
D80V5, multiclass
D80V6, binary
                                cls
clus                               0   1
  DEL PEAK 31(14Q13.1) MUTATED     4   7
  DEL PEAK 31(14Q13.1) WILD-TYPE 117  66
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(14Q13.1) MUTATED      4    7
  DEL PEAK 31(14Q13.1) WILD-TYPE  117   66
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            4                            117
  CLUS_2                            7                             66
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       58      4      6
  DEL PEAK 31(14Q13.1) WILD-TYPE    166    146    139
D80V7, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           58                            166
  CLUS_2                            4                            146
  CLUS_3                            6                            139
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED        7      2     59
  DEL PEAK 31(14Q13.1) WILD-TYPE    140    130    181
D80V8, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            7                            140
  CLUS_2                            2                            130
  CLUS_3                           59                            181
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       51      4     11
  DEL PEAK 31(14Q13.1) WILD-TYPE    154    155    130
D80V9, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           51                            154
  CLUS_2                            4                            155
  CLUS_3                           11                            130
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED        3      4     59
  DEL PEAK 31(14Q13.1) WILD-TYPE      5    212    222
D80V10, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            3                              5
  CLUS_2                            4                            212
  CLUS_3                           59                            222
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       41      5     14
  DEL PEAK 31(14Q13.1) WILD-TYPE    134    112     76
D80V11, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           41                            134
  CLUS_2                            5                            112
  CLUS_3                           14                             76
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED        4     48      8
  DEL PEAK 31(14Q13.1) WILD-TYPE     26    150    146
D80V12, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           48                            150
  CLUS_3                            8                            146

Clustering(81) Variable = DEL PEAK 32(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED        1      6      0      0
  DEL PEAK 32(15Q15.1) WILD-TYPE     13     11     12     10
D81V1, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED        1      0      6
  DEL PEAK 32(15Q15.1) WILD-TYPE     18     19      9
D81V2, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            6                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED        5     18    110      0      2
  DEL PEAK 32(15Q15.1) WILD-TYPE    300     30     44     12      3
D81V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       77     30     12
  DEL PEAK 32(15Q15.1) WILD-TYPE     75     64    152
D81V4, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           77                             75
  CLUS_2                           30                             64
  CLUS_3                           12                            152
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.1) MUTATED        4     12      2      2      2      6
  DEL PEAK 32(15Q15.1) WILD-TYPE     37     25     37     10     39     18
D81V5, multiclass
D81V6, binary
                                cls
clus                               0   1
  DEL PEAK 32(15Q15.1) MUTATED    14  14
  DEL PEAK 32(15Q15.1) WILD-TYPE 107  59
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(15Q15.1) MUTATED     14   14
  DEL PEAK 32(15Q15.1) WILD-TYPE  107   59
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           14                            107
  CLUS_2                           14                             59
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED      114     10     11
  DEL PEAK 32(15Q15.1) WILD-TYPE    110    140    134
D81V7, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          114                            110
  CLUS_2                           10                            140
  CLUS_3                           11                            134
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       13      8    114
  DEL PEAK 32(15Q15.1) WILD-TYPE    134    124    126
D81V8, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           13                            134
  CLUS_2                            8                            124
  CLUS_3                          114                            126
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       99     13     17
  DEL PEAK 32(15Q15.1) WILD-TYPE    106    146    124
D81V9, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           99                            106
  CLUS_2                           13                            146
  CLUS_3                           17                            124
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED        6     17    106
  DEL PEAK 32(15Q15.1) WILD-TYPE      2    199    175
D81V10, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            6                              2
  CLUS_2                           17                            199
  CLUS_3                          106                            175
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       70     13     29
  DEL PEAK 32(15Q15.1) WILD-TYPE    105    104     61
D81V11, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           70                            105
  CLUS_2                           13                            104
  CLUS_3                           29                             61
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED        7     87     18
  DEL PEAK 32(15Q15.1) WILD-TYPE     23    111    136
D81V12, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           87                            111
  CLUS_3                           18                            136

Clustering(82) Variable = DEL PEAK 33(15Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        0      6      0      0
  DEL PEAK 33(15Q23) WILD-TYPE     14     11     12     10
D82V1, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          6                           11
  CLUS_3                          0                           12
  CLUS_4                          0                           10
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED        0      0      6
  DEL PEAK 33(15Q23) WILD-TYPE     19     19      9
D82V2, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          0                           19
  CLUS_2                          0                           19
  CLUS_3                          6                            9
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q23) MUTATED        4     15     88      0      3
  DEL PEAK 33(15Q23) WILD-TYPE    301     33     66     12      2
D82V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       67     21      8
  DEL PEAK 33(15Q23) WILD-TYPE     85     73    156
D82V4, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         67                           85
  CLUS_2                         21                           73
  CLUS_3                          8                          156
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q23) MUTATED        2      8      3      1      2      4
  DEL PEAK 33(15Q23) WILD-TYPE     39     29     36     11     39     20
D82V5, multiclass
D82V6, binary
                              cls
clus                             0   1
  DEL PEAK 33(15Q23) MUTATED    12   8
  DEL PEAK 33(15Q23) WILD-TYPE 109  65
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(15Q23) MUTATED     12    8
  DEL PEAK 33(15Q23) WILD-TYPE  109   65
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         12                          109
  CLUS_2                          8                           65
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       93      9      8
  DEL PEAK 33(15Q23) WILD-TYPE    131    141    137
D82V7, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         93                          131
  CLUS_2                          9                          141
  CLUS_3                          8                          137
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED        9      7     94
  DEL PEAK 33(15Q23) WILD-TYPE    138    125    146
D82V8, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          9                          138
  CLUS_2                          7                          125
  CLUS_3                         94                          146
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       78     11     15
  DEL PEAK 33(15Q23) WILD-TYPE    127    148    126
D82V9, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         78                          127
  CLUS_2                         11                          148
  CLUS_3                         15                          126
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED        4     13     87
  DEL PEAK 33(15Q23) WILD-TYPE      4    203    194
D82V10, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          4                            4
  CLUS_2                         13                          203
  CLUS_3                         87                          194
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       63      9     18
  DEL PEAK 33(15Q23) WILD-TYPE    112    108     72
D82V11, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         63                          112
  CLUS_2                          9                          108
  CLUS_3                         18                           72
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED        6     72     12
  DEL PEAK 33(15Q23) WILD-TYPE     24    126    142
D82V12, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          6                           24
  CLUS_2                         72                          126
  CLUS_3                         12                          142

Clustering(83) Variable = DEL PEAK 34(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        1      6      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE     13     11     12     10
D83V1, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        1      0      6
  DEL PEAK 34(16P13.3) WILD-TYPE     18     19      9
D83V2, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            6                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED        2      8     78      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE    303     40     76     12      5
D83V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       55     20      4
  DEL PEAK 34(16P13.3) WILD-TYPE     97     74    160
D83V4, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           55                             97
  CLUS_2                           20                             74
  CLUS_3                            4                            160
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16P13.3) MUTATED        4      7      1      0      1      3
  DEL PEAK 34(16P13.3) WILD-TYPE     37     30     38     12     40     21
D83V5, multiclass
D83V6, binary
                                cls
clus                               0   1
  DEL PEAK 34(16P13.3) MUTATED     7   9
  DEL PEAK 34(16P13.3) WILD-TYPE 114  64
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(16P13.3) MUTATED      7    9
  DEL PEAK 34(16P13.3) WILD-TYPE  114   64
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            9                             64
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       79      2      7
  DEL PEAK 34(16P13.3) WILD-TYPE    145    148    138
D83V7, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           79                            145
  CLUS_2                            2                            148
  CLUS_3                            7                            138
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        8      2     78
  DEL PEAK 34(16P13.3) WILD-TYPE    139    130    162
D83V8, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            8                            139
  CLUS_2                            2                            130
  CLUS_3                           78                            162
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       69      7      9
  DEL PEAK 34(16P13.3) WILD-TYPE    136    152    132
D83V9, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           69                            136
  CLUS_2                            7                            152
  CLUS_3                            9                            132
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        2      7     76
  DEL PEAK 34(16P13.3) WILD-TYPE      6    209    205
D83V10, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            7                            209
  CLUS_3                           76                            205
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       50      8     19
  DEL PEAK 34(16P13.3) WILD-TYPE    125    109     71
D83V11, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           50                            125
  CLUS_2                            8                            109
  CLUS_3                           19                             71
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        3     65      9
  DEL PEAK 34(16P13.3) WILD-TYPE     27    133    145
D83V12, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           65                            133
  CLUS_3                            9                            145

Clustering(84) Variable = DEL PEAK 35(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED        0      8      1      0
  DEL PEAK 35(16Q21) WILD-TYPE     14      9     11     10
D84V1, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          8                            9
  CLUS_3                          1                           11
  CLUS_4                          0                           10
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED        0      1      8
  DEL PEAK 35(16Q21) WILD-TYPE     19     18      7
D84V2, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          0                           19
  CLUS_2                          1                           18
  CLUS_3                          8                            7
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q21) MUTATED       15     14    121      0      0
  DEL PEAK 35(16Q21) WILD-TYPE    290     34     33     12      5
D84V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       83     32     16
  DEL PEAK 35(16Q21) WILD-TYPE     69     62    148
D84V4, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         83                           69
  CLUS_2                         32                           62
  CLUS_3                         16                          148
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q21) MUTATED        6     11      3      1      6      7
  DEL PEAK 35(16Q21) WILD-TYPE     35     26     36     11     35     17
D84V5, multiclass
D84V6, binary
                              cls
clus                             0   1
  DEL PEAK 35(16Q21) MUTATED    21  13
  DEL PEAK 35(16Q21) WILD-TYPE 100  60
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(16Q21) MUTATED     21   13
  DEL PEAK 35(16Q21) WILD-TYPE  100   60
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         21                          100
  CLUS_2                         13                           60
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED      119     15     15
  DEL PEAK 35(16Q21) WILD-TYPE    105    135    130
D84V7, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        119                          105
  CLUS_2                         15                          135
  CLUS_3                         15                          130
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       16     13    120
  DEL PEAK 35(16Q21) WILD-TYPE    131    119    120
D84V8, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         16                          131
  CLUS_2                         13                          119
  CLUS_3                        120                          120
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED      102     17     24
  DEL PEAK 35(16Q21) WILD-TYPE    103    142    117
D84V9, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        102                          103
  CLUS_2                         17                          142
  CLUS_3                         24                          117
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED        5     28    110
  DEL PEAK 35(16Q21) WILD-TYPE      3    188    171
D84V10, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          5                            3
  CLUS_2                         28                          188
  CLUS_3                        110                          171
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       79     17     30
  DEL PEAK 35(16Q21) WILD-TYPE     96    100     60
D84V11, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         79                           96
  CLUS_2                         17                          100
  CLUS_3                         30                           60
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED        9     94     23
  DEL PEAK 35(16Q21) WILD-TYPE     21    104    131
D84V12, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          9                           21
  CLUS_2                         94                          104
  CLUS_3                         23                          131

Clustering(85) Variable = DEL PEAK 36(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q23.1) MUTATED        1      9      2      0
  DEL PEAK 36(16Q23.1) WILD-TYPE     13      8     10     10
D85V1, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            9                              8
  CLUS_3                            2                             10
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED        1      2      9
  DEL PEAK 36(16Q23.1) WILD-TYPE     18     17      6
D85V2, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            2                             17
  CLUS_3                            9                              6
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q23.1) MUTATED       20     14    127      0      0
  DEL PEAK 36(16Q23.1) WILD-TYPE    285     34     27     12      5
D85V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       85     33     19
  DEL PEAK 36(16Q23.1) WILD-TYPE     67     61    145
D85V4, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           85                             67
  CLUS_2                           33                             61
  CLUS_3                           19                            145
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16Q23.1) MUTATED        8     15      4      2      6      6
  DEL PEAK 36(16Q23.1) WILD-TYPE     33     22     35     10     35     18
D85V5, multiclass
D85V6, binary
                                cls
clus                              0  1
  DEL PEAK 36(16Q23.1) MUTATED   23 18
  DEL PEAK 36(16Q23.1) WILD-TYPE 98 55
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(16Q23.1) MUTATED     23   18
  DEL PEAK 36(16Q23.1) WILD-TYPE   98   55
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           23                             98
  CLUS_2                           18                             55
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED      128     17     16
  DEL PEAK 36(16Q23.1) WILD-TYPE     96    133    129
D85V7, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                          128                             96
  CLUS_2                           17                            133
  CLUS_3                           16                            129
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       17     15    129
  DEL PEAK 36(16Q23.1) WILD-TYPE    130    117    111
D85V8, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           17                            130
  CLUS_2                           15                            117
  CLUS_3                          129                            111
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED      110     18     24
  DEL PEAK 36(16Q23.1) WILD-TYPE     95    141    117
D85V9, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                          110                             95
  CLUS_2                           18                            141
  CLUS_3                           24                            117
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED        4     28    120
  DEL PEAK 36(16Q23.1) WILD-TYPE      4    188    161
D85V10, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                           28                            188
  CLUS_3                          120                            161
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       80     17     34
  DEL PEAK 36(16Q23.1) WILD-TYPE     95    100     56
D85V11, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           80                             95
  CLUS_2                           17                            100
  CLUS_3                           34                             56
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED        9     99     23
  DEL PEAK 36(16Q23.1) WILD-TYPE     21     99    131
D85V12, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                           99                             99
  CLUS_3                           23                            131

Clustering(86) Variable = DEL PEAK 37(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17P13.3) MUTATED        0      8      1      0
  DEL PEAK 37(17P13.3) WILD-TYPE     14      9     11     10
D86V1, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED        1      0      8
  DEL PEAK 37(17P13.3) WILD-TYPE     18     19      7
D86V2, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            8                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(17P13.3) MUTATED        3     14     98      0      0
  DEL PEAK 37(17P13.3) WILD-TYPE    302     34     56     12      5
D86V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       61     24     12
  DEL PEAK 37(17P13.3) WILD-TYPE     91     70    152
D86V4, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           61                             91
  CLUS_2                           24                             70
  CLUS_3                           12                            152
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(17P13.3) MUTATED        3     10      3      0      2      8
  DEL PEAK 37(17P13.3) WILD-TYPE     38     27     36     12     39     16
D86V5, multiclass
D86V6, binary
                                cls
clus                               0   1
  DEL PEAK 37(17P13.3) MUTATED    15  11
  DEL PEAK 37(17P13.3) WILD-TYPE 106  62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(17P13.3) MUTATED     15   11
  DEL PEAK 37(17P13.3) WILD-TYPE  106   62
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                           11                             62
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       94      6     14
  DEL PEAK 37(17P13.3) WILD-TYPE    130    144    131
D86V7, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           94                            130
  CLUS_2                            6                            144
  CLUS_3                           14                            131
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       16      5     93
  DEL PEAK 37(17P13.3) WILD-TYPE    131    127    147
D86V8, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           16                            131
  CLUS_2                            5                            127
  CLUS_3                           93                            147
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       81     15     14
  DEL PEAK 37(17P13.3) WILD-TYPE    124    144    127
D86V9, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           81                            124
  CLUS_2                           15                            144
  CLUS_3                           14                            127
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED        4     19     87
  DEL PEAK 37(17P13.3) WILD-TYPE      4    197    194
D86V10, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                           19                            197
  CLUS_3                           87                            194
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       55     16     21
  DEL PEAK 37(17P13.3) WILD-TYPE    120    101     69
D86V11, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           55                            120
  CLUS_2                           16                            101
  CLUS_3                           21                             69
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED        4     68     20
  DEL PEAK 37(17P13.3) WILD-TYPE     26    130    134
D86V12, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           68                            130
  CLUS_3                           20                            134

Clustering(87) Variable = DEL PEAK 38(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P11.2) MUTATED        0      8      1      0
  DEL PEAK 38(17P11.2) WILD-TYPE     14      9     11     10
D87V1, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED        1      0      8
  DEL PEAK 38(17P11.2) WILD-TYPE     18     19      7
D87V2, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            1                             18
  CLUS_2                            0                             19
  CLUS_3                            8                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P11.2) MUTATED        4     13    105      0      0
  DEL PEAK 38(17P11.2) WILD-TYPE    301     35     49     12      5
D87V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       68     26     12
  DEL PEAK 38(17P11.2) WILD-TYPE     84     68    152
D87V4, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           68                             84
  CLUS_2                           26                             68
  CLUS_3                           12                            152
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17P11.2) MUTATED        6      8      3      0      1      8
  DEL PEAK 38(17P11.2) WILD-TYPE     35     29     36     12     40     16
D87V5, multiclass
D87V6, binary
                                cls
clus                               0   1
  DEL PEAK 38(17P11.2) MUTATED    15  11
  DEL PEAK 38(17P11.2) WILD-TYPE 106  62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(17P11.2) MUTATED     15   11
  DEL PEAK 38(17P11.2) WILD-TYPE  106   62
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                           11                             62
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED      104      5     13
  DEL PEAK 38(17P11.2) WILD-TYPE    120    145    132
D87V7, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                          104                            120
  CLUS_2                            5                            145
  CLUS_3                           13                            132
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       15      4    103
  DEL PEAK 38(17P11.2) WILD-TYPE    132    128    137
D87V8, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           15                            132
  CLUS_2                            4                            128
  CLUS_3                          103                            137
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       86     16     13
  DEL PEAK 38(17P11.2) WILD-TYPE    119    143    128
D87V9, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           86                            119
  CLUS_2                           16                            143
  CLUS_3                           13                            128
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED        5     17     93
  DEL PEAK 38(17P11.2) WILD-TYPE      3    199    188
D87V10, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                           17                            199
  CLUS_3                           93                            188
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       60     16     24
  DEL PEAK 38(17P11.2) WILD-TYPE    115    101     66
D87V11, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           60                            115
  CLUS_2                           16                            101
  CLUS_3                           24                             66
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED        6     74     20
  DEL PEAK 38(17P11.2) WILD-TYPE     24    124    134
D87V12, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           74                            124
  CLUS_3                           20                            134

Clustering(88) Variable = DEL PEAK 39(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED        0      8      0      0
  DEL PEAK 39(17P11.2) WILD-TYPE     14      9     12     10
D88V1, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED        0      0      8
  DEL PEAK 39(17P11.2) WILD-TYPE     19     19      7
D88V2, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            0                             19
  CLUS_3                            8                              7
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P11.2) MUTATED        2     12    102      0      0
  DEL PEAK 39(17P11.2) WILD-TYPE    303     36     52     12      5
D88V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       65     26     11
  DEL PEAK 39(17P11.2) WILD-TYPE     87     68    153
D88V4, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           65                             87
  CLUS_2                           26                             68
  CLUS_3                           11                            153
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P11.2) MUTATED        6      8      3      0      1      6
  DEL PEAK 39(17P11.2) WILD-TYPE     35     29     36     12     40     18
D88V5, multiclass
D88V6, binary
                                cls
clus                               0   1
  DEL PEAK 39(17P11.2) MUTATED    13  11
  DEL PEAK 39(17P11.2) WILD-TYPE 108  62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(17P11.2) MUTATED     13   11
  DEL PEAK 39(17P11.2) WILD-TYPE  108   62
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           11                             62
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       99      5     12
  DEL PEAK 39(17P11.2) WILD-TYPE    125    145    133
D88V7, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           99                            125
  CLUS_2                            5                            145
  CLUS_3                           12                            133
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       14      4     98
  DEL PEAK 39(17P11.2) WILD-TYPE    133    128    142
D88V8, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           14                            133
  CLUS_2                            4                            128
  CLUS_3                           98                            142
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       83     15     12
  DEL PEAK 39(17P11.2) WILD-TYPE    122    144    129
D88V9, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           83                            122
  CLUS_2                           15                            144
  CLUS_3                           12                            129
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED        4     17     89
  DEL PEAK 39(17P11.2) WILD-TYPE      4    199    192
D88V10, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                           17                            199
  CLUS_3                           89                            192
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       60     15     22
  DEL PEAK 39(17P11.2) WILD-TYPE    115    102     68
D88V11, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           60                            115
  CLUS_2                           15                            102
  CLUS_3                           22                             68
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED        6     72     19
  DEL PEAK 39(17P11.2) WILD-TYPE     24    126    135
D88V12, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           72                            126
  CLUS_3                           19                            135

Clustering(89) Variable = DEL PEAK 40(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        0      7      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE     14     10     12     10
D89V1, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                             10
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED        0      0      7
  DEL PEAK 40(17Q11.2) WILD-TYPE     19     19      8
D89V2, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            0                             19
  CLUS_3                            7                              8
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q11.2) MUTATED        2     13     86      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE    303     35     68     12      5
D89V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       51     21     14
  DEL PEAK 40(17Q11.2) WILD-TYPE    101     73    150
D89V4, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           51                            101
  CLUS_2                           21                             73
  CLUS_3                           14                            150
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17Q11.2) MUTATED        3      9      3      0      2      6
  DEL PEAK 40(17Q11.2) WILD-TYPE     38     28     36     12     39     18
D89V5, multiclass
D89V6, binary
                                cls
clus                               0   1
  DEL PEAK 40(17Q11.2) MUTATED    13  10
  DEL PEAK 40(17Q11.2) WILD-TYPE 108  63
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17Q11.2) MUTATED     13   10
  DEL PEAK 40(17Q11.2) WILD-TYPE  108   63
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           10                             63
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       80      7     13
  DEL PEAK 40(17Q11.2) WILD-TYPE    144    143    132
D89V7, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           80                            144
  CLUS_2                            7                            143
  CLUS_3                           13                            132
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       15      5     80
  DEL PEAK 40(17Q11.2) WILD-TYPE    132    127    160
D89V8, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           15                            132
  CLUS_2                            5                            127
  CLUS_3                           80                            160
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       69     16     11
  DEL PEAK 40(17Q11.2) WILD-TYPE    136    143    130
D89V9, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           69                            136
  CLUS_2                           16                            143
  CLUS_3                           11                            130
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED        4     20     72
  DEL PEAK 40(17Q11.2) WILD-TYPE      4    196    209
D89V10, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                           20                            196
  CLUS_3                           72                            209
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       52     16     16
  DEL PEAK 40(17Q11.2) WILD-TYPE    123    101     74
D89V11, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           52                            123
  CLUS_2                           16                            101
  CLUS_3                           16                             74
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED        7     57     20
  DEL PEAK 40(17Q11.2) WILD-TYPE     23    141    134
D89V12, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           57                            141
  CLUS_3                           20                            134

Clustering(90) Variable = DEL PEAK 41(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED        0      7      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE     14     10     12     10
D90V1, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             7                              10
  CLUS_3                             0                              12
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED        0      0      7
  DEL PEAK 41(17Q21.31) WILD-TYPE     19     19      8
D90V2, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             0                              19
  CLUS_2                             0                              19
  CLUS_3                             7                               8
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q21.31) MUTATED        1     12     87      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE    304     36     67     12      5
D90V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       52     23     13
  DEL PEAK 41(17Q21.31) WILD-TYPE    100     71    151
D90V4, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            52                             100
  CLUS_2                            23                              71
  CLUS_3                            13                             151
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q21.31) MUTATED        4      9      3      0      1      4
  DEL PEAK 41(17Q21.31) WILD-TYPE     37     28     36     12     40     20
D90V5, multiclass
D90V6, binary
                                 cls
clus                                0   1
  DEL PEAK 41(17Q21.31) MUTATED    11  10
  DEL PEAK 41(17Q21.31) WILD-TYPE 110  63
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 41(17Q21.31) MUTATED     11   10
  DEL PEAK 41(17Q21.31) WILD-TYPE  110   63
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            11                             110
  CLUS_2                            10                              63
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       79      6     14
  DEL PEAK 41(17Q21.31) WILD-TYPE    145    144    131
D90V7, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            79                             145
  CLUS_2                             6                             144
  CLUS_3                            14                             131
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       15      4     80
  DEL PEAK 41(17Q21.31) WILD-TYPE    132    128    160
D90V8, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            15                             132
  CLUS_2                             4                             128
  CLUS_3                            80                             160
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       65     17     13
  DEL PEAK 41(17Q21.31) WILD-TYPE    140    142    128
D90V9, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            65                             140
  CLUS_2                            17                             142
  CLUS_3                            13                             128
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED        4     20     71
  DEL PEAK 41(17Q21.31) WILD-TYPE      4    196    210
D90V10, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             4                               4
  CLUS_2                            20                             196
  CLUS_3                            71                             210
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       53     18     15
  DEL PEAK 41(17Q21.31) WILD-TYPE    122     99     75
D90V11, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            53                             122
  CLUS_2                            18                              99
  CLUS_3                            15                              75
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED        7     57     22
  DEL PEAK 41(17Q21.31) WILD-TYPE     23    141    132
D90V12, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             7                              23
  CLUS_2                            57                             141
  CLUS_3                            22                             132

Clustering(91) Variable = DEL PEAK 42(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        1      3      1      0
  DEL PEAK 42(18Q21.2) WILD-TYPE     13     14     11     10
D91V1, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED        2      0      3
  DEL PEAK 42(18Q21.2) WILD-TYPE     17     19     12
D91V2, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            0                             19
  CLUS_3                            3                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED        2     17     69      0      2
  DEL PEAK 42(18Q21.2) WILD-TYPE    303     31     85     12      3
D91V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       54     16     10
  DEL PEAK 42(18Q21.2) WILD-TYPE     98     78    154
D91V4, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           54                             98
  CLUS_2                           16                             78
  CLUS_3                           10                            154
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED        6      7      1      1      1      4
  DEL PEAK 42(18Q21.2) WILD-TYPE     35     30     38     11     40     20
D91V5, multiclass
D91V6, binary
                                cls
clus                               0   1
  DEL PEAK 42(18Q21.2) MUTATED     9  11
  DEL PEAK 42(18Q21.2) WILD-TYPE 112  62
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 42(18Q21.2) MUTATED      9   11
  DEL PEAK 42(18Q21.2) WILD-TYPE  112   62
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            9                            112
  CLUS_2                           11                             62
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       74      6     10
  DEL PEAK 42(18Q21.2) WILD-TYPE    150    144    135
D91V7, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           74                            150
  CLUS_2                            6                            144
  CLUS_3                           10                            135
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       11      5     74
  DEL PEAK 42(18Q21.2) WILD-TYPE    136    127    166
D91V8, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           11                            136
  CLUS_2                            5                            127
  CLUS_3                           74                            166
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       67     11      9
  DEL PEAK 42(18Q21.2) WILD-TYPE    138    148    132
D91V9, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           67                            138
  CLUS_2                           11                            148
  CLUS_3                            9                            132
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED        5     13     69
  DEL PEAK 42(18Q21.2) WILD-TYPE      3    203    212
D91V10, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            5                              3
  CLUS_2                           13                            203
  CLUS_3                           69                            212
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       50     11     16
  DEL PEAK 42(18Q21.2) WILD-TYPE    125    106     74
D91V11, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           50                            125
  CLUS_2                           11                            106
  CLUS_3                           16                             74
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED        7     55     15
  DEL PEAK 42(18Q21.2) WILD-TYPE     23    143    139
D91V12, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           55                            143
  CLUS_3                           15                            139

Clustering(92) Variable = DEL PEAK 43(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED        1      3      1      0
  DEL PEAK 43(18Q23) WILD-TYPE     13     14     11     10
D92V1, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          3                           14
  CLUS_3                          1                           11
  CLUS_4                          0                           10
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED        2      0      3
  DEL PEAK 43(18Q23) WILD-TYPE     17     19     12
D92V2, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          2                           17
  CLUS_2                          0                           19
  CLUS_3                          3                           12
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q23) MUTATED        2     18     74      1      1
  DEL PEAK 43(18Q23) WILD-TYPE    303     30     80     11      4
D92V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       57     17     10
  DEL PEAK 43(18Q23) WILD-TYPE     95     77    154
D92V4, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         57                           95
  CLUS_2                         17                           77
  CLUS_3                         10                          154
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q23) MUTATED        6      9      1      1      2      3
  DEL PEAK 43(18Q23) WILD-TYPE     35     28     38     11     39     21
D92V5, multiclass
D92V6, binary
                              cls
clus                             0   1
  DEL PEAK 43(18Q23) MUTATED     9  13
  DEL PEAK 43(18Q23) WILD-TYPE 112  60
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 43(18Q23) MUTATED      9   13
  DEL PEAK 43(18Q23) WILD-TYPE  112   60
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          9                          112
  CLUS_2                         13                           60
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       80      6     10
  DEL PEAK 43(18Q23) WILD-TYPE    144    144    135
D92V7, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         80                          144
  CLUS_2                          6                          144
  CLUS_3                         10                          135
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       12      4     80
  DEL PEAK 43(18Q23) WILD-TYPE    135    128    160
D92V8, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         12                          135
  CLUS_2                          4                          128
  CLUS_3                         80                          160
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       69     12     11
  DEL PEAK 43(18Q23) WILD-TYPE    136    147    130
D92V9, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         69                          136
  CLUS_2                         12                          147
  CLUS_3                         11                          130
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED        4     13     75
  DEL PEAK 43(18Q23) WILD-TYPE      4    203    206
D92V10, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          4                            4
  CLUS_2                         13                          203
  CLUS_3                         75                          206
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       50     12     19
  DEL PEAK 43(18Q23) WILD-TYPE    125    105     71
D92V11, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         50                          125
  CLUS_2                         12                          105
  CLUS_3                         19                           71
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED        5     61     15
  DEL PEAK 43(18Q23) WILD-TYPE     25    137    139
D92V12, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         61                          137
  CLUS_3                         15                          139

Clustering(93) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        0     11      0      0
  DEL PEAK 44(19P13.3) WILD-TYPE     14      6     12     10
D93V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                           11                              6
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED        0      0     11
  DEL PEAK 44(19P13.3) WILD-TYPE     19     19      4
D93V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            0                             19
  CLUS_3                           11                              4
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED        1     14    131      0      1
  DEL PEAK 44(19P13.3) WILD-TYPE    304     34     23     12      4
D93V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       96     28      5
  DEL PEAK 44(19P13.3) WILD-TYPE     56     66    159
D93V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           96                             56
  CLUS_2                           28                             66
  CLUS_3                            5                            159
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED        7     14      2      0      1      7
  DEL PEAK 44(19P13.3) WILD-TYPE     34     23     37     12     40     17
D93V5, multiclass
D93V6, binary
                                cls
clus                               0   1
  DEL PEAK 44(19P13.3) MUTATED    14  17
  DEL PEAK 44(19P13.3) WILD-TYPE 107  56
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 44(19P13.3) MUTATED     14   17
  DEL PEAK 44(19P13.3) WILD-TYPE  107   56
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           14                            107
  CLUS_2                           17                             56
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      133      4      9
  DEL PEAK 44(19P13.3) WILD-TYPE     91    146    136
D93V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          133                             91
  CLUS_2                            4                            146
  CLUS_3                            9                            136
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED        9      4    133
  DEL PEAK 44(19P13.3) WILD-TYPE    138    128    107
D93V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            9                            138
  CLUS_2                            4                            128
  CLUS_3                          133                            107
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      117     11     11
  DEL PEAK 44(19P13.3) WILD-TYPE     88    148    130
D93V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          117                             88
  CLUS_2                           11                            148
  CLUS_3                           11                            130
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED        4     16    119
  DEL PEAK 44(19P13.3) WILD-TYPE      4    200    162
D93V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            4                              4
  CLUS_2                           16                            200
  CLUS_3                          119                            162
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       81     12     30
  DEL PEAK 44(19P13.3) WILD-TYPE     94    105     60
D93V11, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           81                             94
  CLUS_2                           12                            105
  CLUS_3                           30                             60
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED        5    103     15
  DEL PEAK 44(19P13.3) WILD-TYPE     25     95    139
D93V12, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                          103                             95
  CLUS_3                           15                            139

Clustering(94) Variable = DEL PEAK 45(19P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        1      1      0      0
  DEL PEAK 45(19P12) WILD-TYPE     13     16     12     10
D94V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 45(19P12) MUTATED"
clus
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 45(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED        1      0      1
  DEL PEAK 45(19P12) WILD-TYPE     18     19     14
D94V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 45(19P12) MUTATED"
clus
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 45(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P12) MUTATED        1     13     42      0      0
  DEL PEAK 45(19P12) WILD-TYPE    304     35    112     12      5
D94V3, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       33     13      4
  DEL PEAK 45(19P12) WILD-TYPE    119     81    160
D94V4, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         33                          119
  CLUS_2                         13                           81
  CLUS_3                          4                          160
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P12) MUTATED        1      5      1      0      2      1
  DEL PEAK 45(19P12) WILD-TYPE     40     32     38     12     39     23
D94V5, multiclass
D94V6, binary
                              cls
clus                             0   1
  DEL PEAK 45(19P12) MUTATED     5   5
  DEL PEAK 45(19P12) WILD-TYPE 116  68
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 45(19P12) MUTATED      5    5
  DEL PEAK 45(19P12) WILD-TYPE  116   68
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          5                          116
  CLUS_2                          5                           68
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       45      5      6
  DEL PEAK 45(19P12) WILD-TYPE    179    145    139
D94V7, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         45                          179
  CLUS_2                          5                          145
  CLUS_3                          6                          139
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED        6      5     45
  DEL PEAK 45(19P12) WILD-TYPE    141    127    195
D94V8, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          6                          141
  CLUS_2                          5                          127
  CLUS_3                         45                          195
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       39      5      9
  DEL PEAK 45(19P12) WILD-TYPE    166    154    132
D94V9, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         39                          166
  CLUS_2                          5                          154
  CLUS_3                          9                          132
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED        2      6     45
  DEL PEAK 45(19P12) WILD-TYPE      6    210    236
D94V10, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          2                            6
  CLUS_2                          6                          210
  CLUS_3                         45                          236
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       33      7      8
  DEL PEAK 45(19P12) WILD-TYPE    142    110     82
D94V11, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         33                          142
  CLUS_2                          7                          110
  CLUS_3                          8                           82
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED        5     35      8
  DEL PEAK 45(19P12) WILD-TYPE     25    163    146
D94V12, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                         35                          163
  CLUS_3                          8                          146

Clustering(95) Variable = DEL PEAK 46(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        0      8      1      0
  DEL PEAK 46(19Q13.43) WILD-TYPE     14      9     11     10
D95V1, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             8                               9
  CLUS_3                             1                              11
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED        1      0      8
  DEL PEAK 46(19Q13.43) WILD-TYPE     18     19      7
D95V2, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             1                              18
  CLUS_2                             0                              19
  CLUS_3                             8                               7
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.43) MUTATED        2      9     53      0      0
  DEL PEAK 46(19Q13.43) WILD-TYPE    303     39    101     12      5
D95V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       36     15      2
  DEL PEAK 46(19Q13.43) WILD-TYPE    116     79    162
D95V4, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            36                             116
  CLUS_2                            15                              79
  CLUS_3                             2                             162
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.43) MUTATED        2      5      1      0      1      4
  DEL PEAK 46(19Q13.43) WILD-TYPE     39     32     38     12     40     20
D95V5, multiclass
D95V6, binary
                                 cls
clus                                0   1
  DEL PEAK 46(19Q13.43) MUTATED     7   6
  DEL PEAK 46(19Q13.43) WILD-TYPE 114  67
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 46(19Q13.43) MUTATED      7    6
  DEL PEAK 46(19Q13.43) WILD-TYPE  114   67
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             7                             114
  CLUS_2                             6                              67
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       56      4      3
  DEL PEAK 46(19Q13.43) WILD-TYPE    168    146    142
D95V7, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            56                             168
  CLUS_2                             4                             146
  CLUS_3                             3                             142
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED        4      3     56
  DEL PEAK 46(19Q13.43) WILD-TYPE    143    129    184
D95V8, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             4                             143
  CLUS_2                             3                             129
  CLUS_3                            56                             184
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       51      4      3
  DEL PEAK 46(19Q13.43) WILD-TYPE    154    155    138
D95V9, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            51                             154
  CLUS_2                             4                             155
  CLUS_3                             3                             138
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED        1      4     53
  DEL PEAK 46(19Q13.43) WILD-TYPE      7    212    228
D95V10, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             1                               7
  CLUS_2                             4                             212
  CLUS_3                            53                             228
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       34      3     15
  DEL PEAK 46(19Q13.43) WILD-TYPE    141    114     75
D95V11, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            34                             141
  CLUS_2                             3                             114
  CLUS_3                            15                              75
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED        6     42      4
  DEL PEAK 46(19Q13.43) WILD-TYPE     24    156    150
D95V12, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             6                              24
  CLUS_2                            42                             156
  CLUS_3                             4                             150

Clustering(96) Variable = DEL PEAK 47(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        1      1      1      0
  DEL PEAK 47(20P12.1) WILD-TYPE     13     16     11     10
D96V1, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             16
  CLUS_3                            1                             11
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        2      0      1
  DEL PEAK 47(20P12.1) WILD-TYPE     17     19     14
D96V2, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            2                             17
  CLUS_2                            0                             19
  CLUS_3                            1                             14
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED        6      6     21      1      0
  DEL PEAK 47(20P12.1) WILD-TYPE    299     42    133     11      5
D96V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       14      6      6
  DEL PEAK 47(20P12.1) WILD-TYPE    138     88    158
D96V4, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           14                            138
  CLUS_2                            6                             88
  CLUS_3                            6                            158
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED        1      3      1      0      1      4
  DEL PEAK 47(20P12.1) WILD-TYPE     40     34     38     12     40     20
D96V5, multiclass
D96V6, binary
                                cls
clus                               0   1
  DEL PEAK 47(20P12.1) MUTATED     5   5
  DEL PEAK 47(20P12.1) WILD-TYPE 116  68
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 47(20P12.1) MUTATED      5    5
  DEL PEAK 47(20P12.1) WILD-TYPE  116   68
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            5                            116
  CLUS_2                            5                             68
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       25      3      6
  DEL PEAK 47(20P12.1) WILD-TYPE    199    147    139
D96V7, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           25                            199
  CLUS_2                            3                            147
  CLUS_3                            6                            139
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        5      3     26
  DEL PEAK 47(20P12.1) WILD-TYPE    142    129    214
D96V8, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            5                            142
  CLUS_2                            3                            129
  CLUS_3                           26                            214
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       23      5      5
  DEL PEAK 47(20P12.1) WILD-TYPE    182    154    136
D96V9, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           23                            182
  CLUS_2                            5                            154
  CLUS_3                            5                            136
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        2      6     25
  DEL PEAK 47(20P12.1) WILD-TYPE      6    210    256
D96V10, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            2                              6
  CLUS_2                            6                            210
  CLUS_3                           25                            256
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       15      5      7
  DEL PEAK 47(20P12.1) WILD-TYPE    160    112     83
D96V11, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           15                            160
  CLUS_2                            5                            112
  CLUS_3                            7                             83
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        1     18      8
  DEL PEAK 47(20P12.1) WILD-TYPE     29    180    146
D96V12, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                           18                            180
  CLUS_3                            8                            146

Clustering(97) Variable = DEL PEAK 48(22Q11.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.1) MUTATED        0      6      0      0
  DEL PEAK 48(22Q11.1) WILD-TYPE     14     11     12     10
D97V1, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED        0      0      6
  DEL PEAK 48(22Q11.1) WILD-TYPE     19     19      9
D97V2, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            0                             19
  CLUS_2                            0                             19
  CLUS_3                            6                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q11.1) MUTATED        3     15     65      0      1
  DEL PEAK 48(22Q11.1) WILD-TYPE    302     33     89     12      4
D97V3, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       42     18     14
  DEL PEAK 48(22Q11.1) WILD-TYPE    110     76    150
D97V4, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           42                            110
  CLUS_2                           18                             76
  CLUS_3                           14                            150
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q11.1) MUTATED        5      5      1      1      2      3
  DEL PEAK 48(22Q11.1) WILD-TYPE     36     32     38     11     39     21
D97V5, multiclass
D97V6, binary
                                cls
clus                               0   1
  DEL PEAK 48(22Q11.1) MUTATED    10   7
  DEL PEAK 48(22Q11.1) WILD-TYPE 111  66
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 48(22Q11.1) MUTATED     10    7
  DEL PEAK 48(22Q11.1) WILD-TYPE  111   66
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                            7                             66
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       63      6     15
  DEL PEAK 48(22Q11.1) WILD-TYPE    161    144    130
D97V7, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           63                            161
  CLUS_2                            6                            144
  CLUS_3                           15                            130
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       16      5     63
  DEL PEAK 48(22Q11.1) WILD-TYPE    131    127    177
D97V8, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           16                            131
  CLUS_2                            5                            127
  CLUS_3                           63                            177
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       54     17     11
  DEL PEAK 48(22Q11.1) WILD-TYPE    151    142    130
D97V9, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           54                            151
  CLUS_2                           17                            142
  CLUS_3                           11                            130
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED        6     19     57
  DEL PEAK 48(22Q11.1) WILD-TYPE      2    197    224
D97V10, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            6                              2
  CLUS_2                           19                            197
  CLUS_3                           57                            224
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       40     17     15
  DEL PEAK 48(22Q11.1) WILD-TYPE    135    100     75
D97V11, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           40                            135
  CLUS_2                           17                            100
  CLUS_3                           15                             75
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED        5     46     21
  DEL PEAK 48(22Q11.1) WILD-TYPE     25    152    133
D97V12, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           46                            152
  CLUS_3                           21                            133

Clustering(98) Variable = DEL PEAK 49(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.31) MUTATED        0     10      0      0
  DEL PEAK 49(22Q13.31) WILD-TYPE     14      7     12     10
D98V1, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                            10                               7
  CLUS_3                             0                              12
  CLUS_4                             0                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED        0      0     10
  DEL PEAK 49(22Q13.31) WILD-TYPE     19     19      5
D98V2, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             0                              19
  CLUS_2                             0                              19
  CLUS_3                            10                               5
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q13.31) MUTATED        4     15    111      0      2
  DEL PEAK 49(22Q13.31) WILD-TYPE    301     33     43     12      3
D98V3, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       73     27     15
  DEL PEAK 49(22Q13.31) WILD-TYPE     79     67    149
D98V4, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            73                              79
  CLUS_2                            27                              67
  CLUS_3                            15                             149
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(22Q13.31) MUTATED        7     13      3      1      1      5
  DEL PEAK 49(22Q13.31) WILD-TYPE     34     24     36     11     40     19
D98V5, multiclass
D98V6, binary
                                 cls
clus                                0   1
  DEL PEAK 49(22Q13.31) MUTATED    15  15
  DEL PEAK 49(22Q13.31) WILD-TYPE 106  58
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 49(22Q13.31) MUTATED     15   15
  DEL PEAK 49(22Q13.31) WILD-TYPE  106   58
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            15                             106
  CLUS_2                            15                              58
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED      107      8     16
  DEL PEAK 49(22Q13.31) WILD-TYPE    117    142    129
D98V7, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                           107                             117
  CLUS_2                             8                             142
  CLUS_3                            16                             129
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       18      6    107
  DEL PEAK 49(22Q13.31) WILD-TYPE    129    126    133
D98V8, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            18                             129
  CLUS_2                             6                             126
  CLUS_3                           107                             133
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       92     20     12
  DEL PEAK 49(22Q13.31) WILD-TYPE    113    139    129
D98V9, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            92                             113
  CLUS_2                            20                             139
  CLUS_3                            12                             129
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED        6     22     96
  DEL PEAK 49(22Q13.31) WILD-TYPE      2    194    185
D98V10, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             6                               2
  CLUS_2                            22                             194
  CLUS_3                            96                             185
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       66     18     24
  DEL PEAK 49(22Q13.31) WILD-TYPE    109     99     66
D98V11, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            66                             109
  CLUS_2                            18                              99
  CLUS_3                            24                              66
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED        5     80     23
  DEL PEAK 49(22Q13.31) WILD-TYPE     25    118    131
D98V12, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             5                              25
  CLUS_2                            80                             118
  CLUS_3                            23                             131

Clustering(99) Variable = DEL PEAK 50(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP21.1) MUTATED        0      7      0      0
  DEL PEAK 50(XP21.1) WILD-TYPE     14     10     12     10
D99V1, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED        0      0      7
  DEL PEAK 50(XP21.1) WILD-TYPE     19     19      8
D99V2, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           0                            19
  CLUS_2                           0                            19
  CLUS_3                           7                             8
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP21.1) MUTATED        2     10     72      0      0
  DEL PEAK 50(XP21.1) WILD-TYPE    303     38     82     12      5
D99V3, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       46     16      9
  DEL PEAK 50(XP21.1) WILD-TYPE    106     78    155
D99V4, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          46                           106
  CLUS_2                          16                            78
  CLUS_3                           9                           155
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(XP21.1) MUTATED        4     10      0      1      2      4
  DEL PEAK 50(XP21.1) WILD-TYPE     37     27     39     11     39     20
D99V5, multiclass
D99V6, binary
                               cls
clus                              0   1
  DEL PEAK 50(XP21.1) MUTATED    11  10
  DEL PEAK 50(XP21.1) WILD-TYPE 110  63
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 50(XP21.1) MUTATED     11   10
  DEL PEAK 50(XP21.1) WILD-TYPE  110   63
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          11                           110
  CLUS_2                          10                            63
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       72      5      6
  DEL PEAK 50(XP21.1) WILD-TYPE    152    145    139
D99V7, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          72                           152
  CLUS_2                           5                           145
  CLUS_3                           6                           139
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED        6      4     73
  DEL PEAK 50(XP21.1) WILD-TYPE    141    128    167
D99V8, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           6                           141
  CLUS_2                           4                           128
  CLUS_3                          73                           167
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       61      9     10
  DEL PEAK 50(XP21.1) WILD-TYPE    144    150    131
D99V9, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          61                           144
  CLUS_2                           9                           150
  CLUS_3                          10                           131
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED        5     12     63
  DEL PEAK 50(XP21.1) WILD-TYPE      3    204    218
D99V10, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           5                             3
  CLUS_2                          12                           204
  CLUS_3                          63                           218
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       44     10     17
  DEL PEAK 50(XP21.1) WILD-TYPE    131    107     73
D99V11, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          44                           131
  CLUS_2                          10                           107
  CLUS_3                          17                            73
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED        5     54     12
  DEL PEAK 50(XP21.1) WILD-TYPE     25    144    142
D99V12, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          54                           144
  CLUS_3                          12                           142
> q(save="no")
