
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/8278544/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/8143281/UCS-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCS-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=UCS-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/8143281/UCS-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/8278544/transformed.cor.cli.txt"

nPatients in clinical file=57, in cluster file=56, common to both=56
[1] "Reduce the number of clustering variables from 80 to 77."
[1] 77 56
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               24                32 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               24                32 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               31                25 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               31                25 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               23                33 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               23                33 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               21                35 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               21                35 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               12                44 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               12                44 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               23                33 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               23                33 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9                47 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9                47 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                53 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                53 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               23                33 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               23                33 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                48 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                48 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               30                26 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               30                26 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               27                29 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               27                29 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               21                35 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               21                35 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               17                39 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               17                39 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               19                37 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               19                37 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               30                26 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               30                26 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                6                50 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                6                50 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                21                 35 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                21                 35 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                17                 39 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                17                 39 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 51 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 51 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                 49 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                 49 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                22                 34 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                22                 34 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                11                 45 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                11                 45 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                 41 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                 41 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 7                 49 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 7                 49 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 52 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 52 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                10                 46 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                10                 46 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                 50 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                 50 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                 47 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                 47 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                18                 38 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                18                 38 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                 38 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                 38 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                 42 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                 42 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                24                 32 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                24                 32 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                28                 28 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                28                 28 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                37                 19 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                37                 19 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                44                 12 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                44                 12 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                 38 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                 38 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 8                 48 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 8                 48 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               14                42 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               14                42 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                9                47 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                9                47 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9                47 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9                47 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                36 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                36 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               14                42 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               14                42 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               31                25 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               31                25 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               33                23 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               33                23 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                47 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                47 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               18                38 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               18                38 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                5                51 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                5                51 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                7                49 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                7                49 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               13                43 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               13                43 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               13                43 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               13                43 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               23                33 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               23                33 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9                47 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9                47 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               34                22 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               34                22 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               39                17 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               39                17 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                 33 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                 33 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                21                 35 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                21                 35 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                26                 30 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                26                 30 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                 32 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                 32 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                13                 43 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                13                 43 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                14                 42 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                14                 42 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                26                 30 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                26                 30 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                27                 29 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                27                 29 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                32                 24 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                32                 24 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                32                 24 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                32                 24 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                37                 19 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                37                 19 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                34                 22 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                34                 22 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                17                 39 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                17                 39 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                18                 38 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                18                 38 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                20                 36 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                20                 36 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                15                 41 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                15                 41 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                13                 43 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                13                 43 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 49 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 49 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 4                 52 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 4                 52 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                17                 39 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                17                 39 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                33                 23 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                33                 23 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               19                37 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               19                37 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "NEOPLASM.DISEASESTAGE"                 
 [6] "PATHOLOGY.T.STAGE"                     
 [7] "PATHOLOGY.N.STAGE"                     
 [8] "PATHOLOGY.M.STAGE"                     
 [9] "DCCUPLOADDATE"                         
[10] "GENDER"                                
[11] "RADIATIONTHERAPY"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "GLEASON_SCORE"                         
[14] "PSA_VALUE"                             
[15] "DAYS_TO_PSA"                           
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 56 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
          NA           NA         1439           NA           NA          730 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
          NA           NA         2118           NA         1816           NA 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF 
          NA          530           NA           NA           NA           NA 
TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI 
        1209           NA           NA           NA          407           NA 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
          NA          829          812          781          471          572 
TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
         295           NA           NA         1672         1089          604 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
          NA         2841         2262          833           NA           NA 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
          NA         2596           NA           NA          461           NA 
TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW 
         298          452           81           NA           NA           NA 
TCGA-QM-A5NM TCGA-QN-A5NN 
         165           NA 
Variable 1:'AGE':	nDistinctValues=30,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PATHOLOGY.T.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.N.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 56 columns, 1 survival variables, and 1 non-survival variables.
AGE, nv=30, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                0  1
  1P GAIN MUTATED   10 14
  1P GAIN WILD-TYPE 12 19
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               24                31 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               14                19 
$`1P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RV TCGA-N5-A59F 
       52.31        47.31        18.08         4.87        59.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VF TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PL 
       17.42        17.16         0.26        12.43        13.38        13.74 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q7 
       26.70        25.68        15.48        67.17        54.97        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-ND-A4W6 TCGA-NF-A4X2 TCGA-QM-A5NM 
       15.81         3.75        17.79        10.42         2.66         5.42 

$`1P GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
        4.67        24.00        22.52        29.95        69.63        50.17 
TCGA-N5-A59E TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VG TCGA-N7-A4Y0 
       14.70        19.63         3.68         9.57        39.75        25.35 
TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q4 
       26.63        27.25        18.81         9.70        21.93        35.80 
TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA 
       93.40        74.37        27.39         6.67        85.35        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A5CP TCGA-NG-A4VU 
       15.16         5.49         9.80        14.86         5.49        14.53 
TCGA-NG-A4VW 
       31.20 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.26              3.68 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            67.17             93.40 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           16.485            22.520 
[1] "0.3 - 67.2 (16.5)" "3.7 - 93.4 (22.5)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
[1] "hr=" "1.2"
D1V2, continuous

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED   14 17
  1Q GAIN WILD-TYPE  8 16
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               31                24 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               17                16 
$`1Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT 
       52.31        47.31        18.08         4.87        24.00        69.63 
TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VF TCGA-N6-A4VG 
       59.70        11.87        17.42        19.63        17.16        39.75 
TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       12.43        13.38        13.74        26.70        25.68        15.48 
TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV 
       21.93        67.17        54.97        19.86        15.81        93.40 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-ND-A4W6 TCGA-NF-A4X2 TCGA-NG-A4VU TCGA-NG-A4VW 
        3.75        17.79        10.42         2.66        14.53        31.20 
TCGA-QM-A5NM 
        5.42 

$`1Q GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59E TCGA-N6-A4VD 
        4.67        22.52        29.95        50.17        14.70         3.68 
TCGA-N6-A4VE TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PQ 
        9.57        25.35         0.26        26.63        27.25        18.81 
TCGA-N8-A56S TCGA-N9-A4Q4 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 
        9.70        35.80        74.37        27.39         6.67        85.35 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A5CP 
       23.47        15.16         5.49         9.80        14.86         5.49 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             2.66              0.26 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            93.40             85.35 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           18.080            16.985 
[1] "2.7 - 93.4 (18.1)" "0.3 - 85.3 (17.0)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
[1] "hr=" "1.4"
D2V2, continuous

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN MUTATED    6 17
  2P GAIN WILD-TYPE 16 16
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               23                32 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               17                16 
$`2P GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       18.08        29.95        50.17        14.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A56S 
       19.63         0.26        12.43        13.38        13.74         9.70 
TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 
       67.17        54.97        35.80        74.37         3.75        17.79 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A5CP TCGA-NG-A4VU 
       10.42        23.47         9.80         5.49        14.53 

$`2P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        47.31         4.87        24.00        22.52 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG 
       69.63        59.70         3.68         9.57        17.16        39.75 
TCGA-N7-A4Y0 TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       25.35        26.63        27.25        26.70        25.68        15.48 
TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX 
       18.81        21.93        19.86        15.81        93.40        27.39 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 
        6.67        85.35        15.16         5.49        14.86         2.66 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.20         5.42 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.26              2.66 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            74.37             93.40 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           14.700            22.225 
[1] "0.3 - 74.4 (14.7)" "2.7 - 93.4 (22.2)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D3V2, continuous

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                0  1
  2Q GAIN MUTATED    7 14
  2Q GAIN WILD-TYPE 15 19
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               21                34 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               14                19 
$`2Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59F TCGA-N6-A4VC 
       52.31        18.08        29.95        50.17        11.87        19.63 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A56S TCGA-N9-A4Q3 
        0.26        12.43        13.38        13.74         9.70        54.97 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 
       35.80        19.86        93.40        74.37         3.75        17.79 
TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NG-A4VU 
       23.47         9.80        14.53 

$`2Q GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT 
        4.67        47.31         4.87        24.00        22.52        69.63 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4V9 TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF 
       59.70        14.70        17.42         3.68         9.57        17.16 
TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       39.75        25.35        26.63        27.25        26.70        25.68 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q8 TCGA-NA-A4QX 
       15.48        18.81        21.93        67.17        15.81        27.39 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX 
        6.67        85.35        10.42        15.16         5.49        14.86 
TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        2.66         5.49        31.20         5.42 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.26              2.66 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            93.40             85.35 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           18.080            18.115 
[1] "0.3 - 93.4 (18.1)" "2.7 - 85.3 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D4V2, continuous

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN MUTATED    5  6
  3P GAIN WILD-TYPE 17 27
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               11                44 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                6                27 
$`3P GAIN MUTATED`
TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QX 
       26.70        18.81        67.17        54.97        15.81        27.39 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VW 
       10.42        23.47        14.86         2.66        31.20 

$`3P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF 
       11.87        17.42        19.63         3.68         9.57        17.16 
TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI 
       39.75        25.35         0.26        12.43        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4PZ 
       13.74        27.25        25.68        15.48         9.70        21.93 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 
       35.80        19.86        93.40        74.37         3.75        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A5CP 
        6.67        85.35        15.16         5.49         9.80         5.49 
TCGA-NG-A4VU TCGA-QM-A5NM 
       14.53         5.42 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             2.66              0.26 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            67.17             93.40 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           23.470            17.605 
[1] "2.7 - 67.2 (23.5)" "0.3 - 93.4 (17.6)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED    9 13
  3Q GAIN WILD-TYPE 13 20
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               22                33 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               13                20 
$`3Q GAIN MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N7-A4Y5 TCGA-N7-A4Y8 
       24.00        22.52        19.63         9.57         0.26        12.43 
TCGA-N7-A59B TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 
       13.38        26.70        15.48        18.81        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-ND-A4W6 
       54.97        15.81        93.40        74.37        27.39        10.42 
TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VW 
       23.47        14.86         2.66        31.20 

$`3Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS 
       52.31         4.67        47.31        18.08         4.87        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       69.63        50.17        59.70        14.70        11.87        17.42 
TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N8-A4PI TCGA-N8-A4PL 
        3.68        17.16        39.75        25.35        26.63        13.74 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QY 
       27.25        25.68         9.70        35.80        19.86         3.75 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU 
       17.79         6.67        85.35        15.16         5.49         9.80 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
        5.49        14.53         5.42 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.26              3.68 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            93.40             85.35 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            20.78             17.42 
[1] "0.3 - 93.4 (20.8)" "3.7 - 85.3 (17.4)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                0  1
  4P GAIN MUTATED    4  5
  4P GAIN WILD-TYPE 18 28
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9                46 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                5                28 
$`4P GAIN MUTATED`
TCGA-N5-A4RV TCGA-N7-A59B TCGA-N8-A4PP TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q8 
       59.70        13.38        15.48        21.93        67.17        15.81 
TCGA-NA-A4QV TCGA-ND-A4W6 TCGA-NF-A4WX 
       93.40        10.42        14.86 

$`4P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F 
       22.52        29.95        69.63        50.17        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG 
       17.42        19.63         3.68         9.57        17.16        39.75 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       25.35         0.26        12.43        26.63        13.74        27.25 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q3 TCGA-N9-A4Q4 
       26.70        25.68        18.81         9.70        54.97        35.80 
TCGA-N9-A4Q7 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 
       19.86        74.37        27.39         3.75        17.79         6.67 
TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4X2 
       85.35        23.47        15.16         5.49         9.80         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        14.53        31.20         5.42 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            10.42              0.26 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            93.40             85.35 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           15.810            18.445 
[1] "10.4 - 93.4 (15.8)" "0.3 - 85.3 (18.4)" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D7V2, continuous

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                0  1
  4Q GAIN MUTATED    1  2
  4Q GAIN WILD-TYPE 21 31
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                52 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                31 
$`4Q GAIN MUTATED`
TCGA-N5-A4RV TCGA-N9-A4PZ TCGA-N9-A4Q8 
       59.70        21.93        15.81 

$`4Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F 
       22.52        29.95        69.63        50.17        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG 
       17.42        19.63         3.68         9.57        17.16        39.75 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL 
       25.35         0.26        12.43        13.38        26.63        13.74 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       27.25        26.70        25.68        15.48        18.81         9.70 
TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW 
       67.17        54.97        35.80        19.86        93.40        74.37 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
       27.39         3.75        17.79         6.67        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 
       23.47        15.16         5.49         9.80        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        14.53        31.20         5.42 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            15.81              0.26 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             59.7              93.4 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           21.930            17.935 
[1] "15.8 - 59.7 (21.9)" "0.3 - 93.4 (17.9)" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED    7 15
  5P GAIN WILD-TYPE 15 18
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               22                33 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               15                18 
$`5P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VE 
       52.31        69.63        50.17        14.70        11.87         9.57 
TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N8-A4PN TCGA-N8-A4PO 
       17.16        39.75        25.35         0.26        26.70        25.68 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-NA-A4QW TCGA-NA-A4R0 TCGA-NA-A5I1 
       15.48        18.81        21.93        74.37        17.79        85.35 
TCGA-ND-A4W6 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW 
       10.42         5.49        14.53        31.20 

$`5P GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
        4.67        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N7-A4Y8 
       29.95        59.70        17.42        19.63         3.68        12.43 
TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-N9-A4Q1 
       13.38        26.63        13.74        27.25         9.70        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX 
       54.97        35.80        19.86        15.81        93.40        27.39 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU 
        3.75         6.67        23.47        15.16         5.49         9.80 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-QM-A5NM 
       14.86         2.66         5.42 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.26              2.66 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            85.35             93.40 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            20.37             17.42 
[1] "0.3 - 85.3 (20.4)" "2.7 - 93.4 (17.4)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                0  1
  5Q GAIN MUTATED    2  5
  5Q GAIN WILD-TYPE 20 28
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                7                48 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                5                28 
$`5Q GAIN MUTATED`
TCGA-N5-A59E TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-NA-A5I1 
       14.70         9.57        17.16        39.75        25.35        85.35 
TCGA-NG-A4VW 
       31.20 

$`5Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F 
       22.52        29.95        69.63        50.17        59.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B 
       17.42        19.63         3.68         0.26        12.43        13.38 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       26.63        13.74        27.25        26.70        25.68        15.48 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 
       18.81         9.70        21.93        67.17        54.97        35.80 
TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       19.86        15.81        93.40        74.37        27.39         3.75 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       17.79         6.67        10.42        23.47        15.16         5.49 
TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
        9.80        14.86         2.66         5.49        14.53         5.42 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             9.57              0.26 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            85.35             93.40 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           25.350            17.935 
[1] "9.6 - 85.3 (25.4)" "0.3 - 93.4 (17.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                0  1
  6P GAIN MUTATED   10 19
  6P GAIN WILD-TYPE 12 14
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               29                26 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               19                14 
$`6P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT 
       52.31        47.31        18.08         4.87        24.00        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N6-A4VF 
       50.17        59.70        14.70        19.63         9.57        17.16 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N9-A4PZ TCGA-N9-A4Q1 
       25.35         0.26        13.74        25.68        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R0 
       54.97        19.86        15.81        74.37        27.39        17.79 
TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VU 
       23.47         5.49        14.86         2.66        14.53 

$`6P GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VD 
        4.67        22.52        29.95        11.87        17.42         3.68 
TCGA-N6-A4VG TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN 
       39.75        12.43        13.38        26.63        27.25        26.70 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q4 TCGA-NA-A4QV TCGA-NA-A4QY 
       15.48        18.81         9.70        35.80        93.40         3.75 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A5CP 
        6.67        85.35        10.42        15.16         9.80         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.20         5.42 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.26              3.68 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            74.37             93.40 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            19.86             15.32 
[1] "0.3 - 74.4 (19.9)" "3.7 - 93.4 (15.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                0  1
  6Q GAIN MUTATED    9 18
  6Q GAIN WILD-TYPE 13 15
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               27                28 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               18                15 
$`6Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT 
       52.31        47.31        18.08         4.87        24.00        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N6-A4VF 
       50.17        59.70        14.70        19.63         9.57        17.16 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N8-A4PO TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q7 
       25.35         0.26        25.68        21.93        67.17        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R0 TCGA-ND-A4WA TCGA-ND-A4WF 
       15.81        74.37        27.39        17.79        23.47         5.49 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VU 
       14.86         2.66        14.53 

$`6Q GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VD 
        4.67        22.52        29.95        11.87        17.42         3.68 
TCGA-N6-A4VG TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       39.75        12.43        13.38        26.63        13.74        27.25 
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q3 TCGA-N9-A4Q4 
       26.70        15.48        18.81         9.70        54.97        35.80 
TCGA-NA-A4QV TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC 
       93.40         3.75         6.67        85.35        10.42        15.16 
TCGA-NF-A4WU TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        9.80         5.49        31.20         5.42 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.26              3.68 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            74.37             93.40 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            19.86             15.32 
[1] "0.3 - 74.4 (19.9)" "3.7 - 93.4 (15.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D12V2, continuous

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                0  1
  7P GAIN MUTATED    9 12
  7P GAIN WILD-TYPE 13 21
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               21                34 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               12                21 
$`7P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RN TCGA-N5-A4RU TCGA-N6-A4V9 TCGA-N6-A4VG 
       52.31         4.67        24.00        50.17        17.42        39.75 
TCGA-N7-A4Y8 TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV 
       12.43        21.93        67.17        35.80        19.86        93.40 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 
       27.39         3.75        10.42         5.49        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
        5.49        14.53         5.42 

$`7P GAIN WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       47.31        18.08         4.87        22.52        29.95        69.63 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE 
       59.70        14.70        11.87        19.63         3.68         9.57 
TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL 
       17.16        25.35         0.26        13.38        26.63        13.74 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       27.25        26.70        25.68        15.48        18.81         9.70 
TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 
       54.97        15.81        74.37        17.79         6.67        85.35 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NG-A4VW 
       23.47        15.16         9.80        31.20 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             2.66              0.26 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            93.40             85.35 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           17.420            18.445 
[1] "2.7 - 93.4 (17.4)" "0.3 - 85.3 (18.4)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
[1] "hr=" "1"  
D13V2, continuous

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                0  1
  7Q GAIN MUTATED    8  9
  7Q GAIN WILD-TYPE 14 24
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               17                38 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                9                24 
$`7Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RN TCGA-N6-A4V9 TCGA-N6-A4VF TCGA-N6-A4VG 
       52.31         4.67        24.00        17.42        17.16        39.75 
TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QX TCGA-ND-A4WA 
       21.93        67.17        35.80        19.86        27.39        23.47 
TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-QM-A5NM 
        5.49        14.86         2.66         5.49         5.42 

$`7Q GAIN WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       47.31        18.08         4.87        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VC TCGA-N6-A4VD 
       50.17        59.70        14.70        11.87        19.63         3.68 
TCGA-N6-A4VE TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI 
        9.57        25.35         0.26        12.43        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       13.74        27.25        26.70        25.68        15.48        18.81 
TCGA-N8-A56S TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QY 
        9.70        54.97        15.81        93.40        74.37         3.75 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NF-A4WU 
       17.79         6.67        85.35        10.42        15.16         9.80 
TCGA-NG-A4VU TCGA-NG-A4VW 
       14.53        31.20 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             2.66              0.26 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            67.17             93.40 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           19.860            17.935 
[1] "2.7 - 67.2 (19.9)" "0.3 - 93.4 (17.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
[1] "hr=" "1.1"
D14V2, continuous

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                0  1
  8P GAIN MUTATED    7 12
  8P GAIN WILD-TYPE 15 21
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               19                36 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               12                21 
$`8P GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 
        4.67        47.31         4.87         9.57        17.16        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PQ 
        0.26        12.43        13.38        26.63        27.25        18.81 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VW 
       10.42        23.47        14.86         2.66         5.49        31.20 
TCGA-QM-A5NM 
        5.42 

$`8P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       52.31        18.08        24.00        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC 
       50.17        59.70        14.70        11.87        17.42        19.63 
TCGA-N6-A4VD TCGA-N6-A4VG TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
        3.68        39.75        13.74        26.70        25.68        15.48 
TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
        9.70        21.93        67.17        54.97        35.80        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
       15.81        93.40        74.37        27.39         3.75        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NG-A4VU 
        6.67        85.35        15.16         5.49         9.80        14.53 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.26              3.68 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            47.31             93.40 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           13.380            20.895 
[1] "0.3 - 47.3 (13.4)" "3.7 - 93.4 (20.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
[1] "hr=" "1.9"
D15V2, continuous

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED   11 18
  8Q GAIN WILD-TYPE 11 15
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               29                26 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               18                15 
$`8Q GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N6-A4VC TCGA-N6-A4VE 
        4.67        47.31         4.87        24.00        19.63         9.57 
TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI 
       17.16        25.35         0.26        12.43        13.38        26.63 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q4 TCGA-N9-A4Q8 
       27.25        25.68        15.48        18.81        35.80        15.81 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WX 
        3.75        17.79        85.35        10.42        23.47        14.86 
TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        2.66         5.49        14.53        31.20         5.42 

$`8Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
       52.31        18.08        22.52        29.95        69.63        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VD TCGA-N6-A4VG 
       59.70        14.70        11.87        17.42         3.68        39.75 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       13.74        26.70         9.70        21.93        67.17        54.97 
TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4WC 
       19.86        93.40        74.37        27.39         6.67        15.16 
TCGA-ND-A4WF TCGA-NF-A4WU 
        5.49         9.80 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.26              3.68 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            85.35             93.40 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           15.810            22.225 
[1] "0.3 - 85.3 (15.8)" "3.7 - 93.4 (22.2)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
[1] "hr=" "1.7"
D16V2, continuous

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                0  1
  9P GAIN MUTATED    2  4
  9P GAIN WILD-TYPE 20 29
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                6                49 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                4                29 
$`9P GAIN MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RU TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N9-A4PZ 
       47.31        50.17        13.38        13.74        15.48        21.93 

$`9P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       29.95        69.63        59.70        14.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 
       19.63         3.68         9.57        17.16        39.75        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
        0.26        12.43        26.63        27.25        26.70        25.68 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       18.81         9.70        67.17        54.97        35.80        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
       15.81        93.40        74.37        27.39         3.75        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        6.67        85.35        10.42        23.47        15.16         5.49 
TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW 
        9.80        14.86         2.66         5.49        14.53        31.20 
TCGA-QM-A5NM 
        5.42 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            13.38              0.26 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            50.17             93.40 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           18.705            18.080 
[1] "13.4 - 50.2 (18.7)" "0.3 - 93.4 (18.1)" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous

Clustering(18) Variable = 10P GAIN MUTATION ANALYSIS
D18V1, survival
                    sevent
clus2                 0  1
  10P GAIN MUTATED    7 13
  10P GAIN WILD-TYPE 15 20
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                20                 35 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                13                 20 
$`10P GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A59F TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A59B 
       18.08        11.87        39.75        25.35         0.26        13.38 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       13.74        26.70        15.48        18.81        67.17        54.97 
TCGA-NA-A4QX TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP 
       27.39        10.42        23.47        14.86         2.66         5.49 
TCGA-NG-A4VU TCGA-NG-A4VW 
       14.53        31.20 

$`10P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        47.31         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4V9 
       29.95        69.63        50.17        59.70        14.70        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y8 TCGA-N8-A4PI 
       19.63         3.68         9.57        17.16        12.43        26.63 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       27.25        25.68         9.70        21.93        35.80        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 
       15.81        93.40        74.37         3.75        17.79         6.67 
TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-QM-A5NM 
       85.35        15.16         5.49         9.80         5.42 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.26               3.68 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             67.17              93.40 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             16.78              19.63 
[1] "0.3 - 67.2 (16.8)" "3.7 - 93.4 (19.6)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-QM-A5NM 
"10P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-QM-A5NM 
"10P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-QM-A5NM 
"10P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D18V2, continuous

Clustering(19) Variable = 10Q GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                 0  1
  10Q GAIN MUTATED    8  8
  10Q GAIN WILD-TYPE 14 25
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                16                 39 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 8                 25 
$`10Q GAIN MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 
       24.00        59.70        11.87        39.75        25.35         0.26 
TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-NA-A4QW 
       13.38        13.74        26.70        18.81        67.17        74.37 
TCGA-ND-A4WA TCGA-NF-A4X2 TCGA-NG-A4VU TCGA-NG-A4VW 
       23.47         2.66        14.53        31.20 

$`10Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.31         4.67        47.31        18.08         4.87        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N6-A4V9 TCGA-N6-A4VC 
       29.95        69.63        50.17        14.70        17.42        19.63 
TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PM 
        3.68         9.57        17.16        12.43        26.63        27.25 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q3 TCGA-N9-A4Q4 
       25.68        15.48         9.70        21.93        54.97        35.80 
TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
       19.86        15.81        93.40        27.39         3.75        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU 
        6.67        85.35        10.42        15.16         5.49         9.80 
TCGA-NF-A4WX TCGA-NF-A5CP TCGA-QM-A5NM 
       14.86         5.49         5.42 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.26               3.68 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             74.37              93.40 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            23.735             17.420 
[1] "0.3 - 74.4 (23.7)" "3.7 - 93.4 (17.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-QM-A5NM 
"10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-QM-A5NM 
"10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-QM-A5NM 
"10Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D19V2, continuous

Clustering(20) Variable = 11P GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                 0  1
  11P GAIN MUTATED    2  3
  11P GAIN WILD-TYPE 20 30
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 50 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 3                 30 
$`11P GAIN MUTATED`
TCGA-N6-A4VE TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QW TCGA-NG-A4VU 
        9.57        25.68        15.48        74.37        14.53 

$`11P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N6-A4VG 
       11.87        17.42        19.63         3.68        17.16        39.75 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL 
       25.35         0.26        12.43        13.38        26.63        13.74 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 
       27.25        26.70        18.81         9.70        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX 
       54.97        35.80        19.86        15.81        93.40        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        3.75        17.79         6.67        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP 
       15.16         5.49         9.80        14.86         2.66         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.20         5.42 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              9.57               0.26 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             74.37              93.40 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            15.480             18.445 
[1] "9.6 - 74.4 (15.5)" "0.3 - 93.4 (18.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"11P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"11P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"11P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D20V2, continuous

Clustering(21) Variable = 11Q GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                 0  1
  11Q GAIN MUTATED    3  4
  11Q GAIN WILD-TYPE 19 29
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 7                 48 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                 29 
$`11Q GAIN MUTATED`
TCGA-N6-A4VE TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4Q7 TCGA-NA-A4QW 
        9.57        26.70        15.48         9.70        19.86        74.37 
TCGA-NG-A4VU 
       14.53 

$`11Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N6-A4VG 
       11.87        17.42        19.63         3.68        17.16        39.75 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL 
       25.35         0.26        12.43        13.38        26.63        13.74 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       27.25        25.68        18.81        21.93        67.17        54.97 
TCGA-N9-A4Q4 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
       35.80        15.81        93.40        27.39         3.75        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        6.67        85.35        10.42        23.47        15.16         5.49 
TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        9.80        14.86         2.66         5.49        31.20         5.42 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              9.57               0.26 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             74.37              93.40 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            15.480             18.445 
[1] "9.6 - 74.4 (15.5)" "0.3 - 93.4 (18.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"11Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous

Clustering(22) Variable = 12P GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                 0  1
  12P GAIN MUTATED    7 15
  12P GAIN WILD-TYPE 15 18
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                22                 33 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                15                 18 
$`12P GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59E 
        4.67         4.87        22.52        29.95        69.63        14.70 
TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PL TCGA-N8-A4PM 
       19.63         9.57         0.26        12.43        13.74        27.25 
TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4R0 
        9.70        67.17        54.97        35.80        19.86        17.79 
TCGA-ND-A4W6 TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX 
       10.42         5.49         9.80        14.86 

$`12P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RU TCGA-N5-A4RV 
       52.31        47.31        18.08        24.00        50.17        59.70 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 
       11.87        17.42         3.68        17.16        39.75        25.35 
TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       13.38        26.63        26.70        25.68        15.48        18.81 
TCGA-N9-A4PZ TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       21.93        15.81        93.40        74.37        27.39         3.75 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NF-A4X2 TCGA-NF-A5CP 
        6.67        85.35        23.47        15.16         2.66         5.49 
TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.53        31.20         5.42 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.26               2.66 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             69.63              93.40 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             14.78              21.93 
[1] "0.3 - 69.6 (14.8)" "2.7 - 93.4 (21.9)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"12P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"12P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"12P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D22V2, continuous

Clustering(23) Variable = 12Q GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  12Q GAIN MUTATED    5  6
  12Q GAIN WILD-TYPE 17 27
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                11                 44 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 6                 27 
$`12Q GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N6-A4VE TCGA-N7-A4Y5 TCGA-N8-A4PM 
        4.67         4.87        69.63         9.57         0.26        27.25 
TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NF-A4WX 
        9.70        67.17        35.80        19.86        14.86 

$`12Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.31        47.31        18.08        24.00        22.52        29.95 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC 
       50.17        59.70        14.70        11.87        17.42        19.63 
TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N7-A59B 
        3.68        17.16        39.75        25.35        12.43        13.38 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       26.63        13.74        26.70        25.68        15.48        18.81 
TCGA-N9-A4PZ TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX 
       21.93        54.97        15.81        93.40        74.37        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        3.75        17.79         6.67        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU 
       15.16         5.49         9.80         2.66         5.49        14.53 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.20         5.42 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.26               2.66 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             69.63              93.40 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            14.860             18.445 
[1] "0.3 - 69.6 (14.9)" "2.7 - 93.4 (18.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous

Clustering(24) Variable = 13Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                 0  1
  13Q GAIN MUTATED    5 10
  13Q GAIN WILD-TYPE 17 23
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                15                 40 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                10                 23 
$`13Q GAIN MUTATED`
TCGA-N5-A4RF TCGA-N5-A59E TCGA-N5-A59F TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PL 
       47.31        14.70        11.87         0.26        12.43        13.74 
TCGA-N8-A4PN TCGA-N9-A4Q4 TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QY TCGA-ND-A4W6 
       26.70        35.80        15.81        74.37         3.75        10.42 
TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NG-A4VU 
       23.47        14.86        14.53 

$`13Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N6-A4V9 TCGA-N6-A4VC 
       29.95        69.63        50.17        59.70        17.42        19.63 
TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A59B 
        3.68         9.57        17.16        39.75        25.35        13.38 
TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       26.63        27.25        25.68        15.48        18.81         9.70 
TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QX 
       21.93        67.17        54.97        19.86        93.40        27.39 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU 
       17.79         6.67        85.35        15.16         5.49         9.80 
TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        2.66         5.49        31.20         5.42 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.26               2.66 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             74.37              93.40 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            14.700             19.745 
[1] "0.3 - 74.4 (14.7)" "2.7 - 93.4 (19.7)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"13Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D24V2, continuous

Clustering(25) Variable = 14Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                 0  1
  14Q GAIN MUTATED    1  6
  14Q GAIN WILD-TYPE 21 27
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 7                 48 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 6                 27 
$`14Q GAIN MUTATED`
TCGA-N5-A4RF TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y8 TCGA-N9-A4Q8 TCGA-NA-A4QY 
       47.31         9.57        17.16        12.43        15.81         3.75 
TCGA-NF-A5CP 
        5.49 

$`14Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 
       17.42        19.63         3.68        39.75        25.35         0.26 
TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       13.38        26.63        13.74        27.25        26.70        25.68 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       15.48        18.81         9.70        21.93        67.17        54.97 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R0 
       35.80        19.86        93.40        74.37        27.39        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        6.67        85.35        10.42        23.47        15.16         5.49 
TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        9.80        14.86         2.66        14.53        31.20         5.42 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              3.75               0.26 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             47.31              93.40 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            12.430             19.745 
[1] "3.8 - 47.3 (12.4)" "0.3 - 93.4 (19.7)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"14Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"14Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"14Q GAIN WILD-TYPE" 
[1] "hr=" "2.8"
D25V2, continuous

Clustering(26) Variable = 15Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                 0  1
  15Q GAIN MUTATED    2  2
  15Q GAIN WILD-TYPE 20 31
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 51 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                 31 
$`15Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A59E TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       52.31        14.70        35.80        19.86 

$`15Q GAIN WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
        4.67        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 
       29.95        69.63        50.17        59.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 
       19.63         3.68         9.57        17.16        39.75        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
        0.26        12.43        13.38        26.63        13.74        27.25 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ 
       26.70        25.68        15.48        18.81         9.70        21.93 
TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX 
       67.17        54.97        15.81        93.40        74.37        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        3.75        17.79         6.67        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP 
       15.16         5.49         9.80        14.86         2.66         5.49 
TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.53        31.20         5.42 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             14.70               0.26 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             52.31              93.40 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             27.83              17.79 
[1] "14.7 - 52.3 (27.8)" "0.3 - 93.4 (17.8)" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"15Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D26V2, continuous

Clustering(27) Variable = 16P GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                 0  1
  16P GAIN MUTATED    4  6
  16P GAIN WILD-TYPE 18 27
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                10                 45 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 6                 27 
$`16P GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N6-A4VG TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A56S 
       18.08         4.87        39.75        26.70        25.68         9.70 
TCGA-N9-A4Q1 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY 
       67.17        93.40        27.39         3.75 

$`16P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.31         4.67        47.31        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       69.63        50.17        59.70        14.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y5 
       19.63         3.68         9.57        17.16        25.35         0.26 
TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP 
       12.43        13.38        26.63        13.74        27.25        15.48 
TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 
       18.81        21.93        54.97        35.80        19.86        15.81 
TCGA-NA-A4QW TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.37        17.79         6.67        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP 
       15.16         5.49         9.80        14.86         2.66         5.49 
TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.53        31.20         5.42 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              3.75               0.26 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             93.40              85.35 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             26.19              17.42 
[1] "3.8 - 93.4 (26.2)" "0.3 - 85.3 (17.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"16P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"16P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"16P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D27V2, continuous

Clustering(28) Variable = 16Q GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                 0  1
  16Q GAIN MUTATED    3  3
  16Q GAIN WILD-TYPE 19 30
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                 49 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 3                 30 
$`16Q GAIN MUTATED`
TCGA-N5-A4RM TCGA-N6-A4VG TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QV TCGA-NA-A4QX 
        4.87        39.75        25.68         9.70        93.40        27.39 

$`16Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        47.31        18.08        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 
       17.42        19.63         3.68         9.57        17.16        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
        0.26        12.43        13.38        26.63        13.74        27.25 
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       26.70        15.48        18.81        21.93        67.17        54.97 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 
       35.80        19.86        15.81        74.37         3.75        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        6.67        85.35        10.42        23.47        15.16         5.49 
TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW 
        9.80        14.86         2.66         5.49        14.53        31.20 
TCGA-QM-A5NM 
        5.42 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              4.87               0.26 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             93.40              85.35 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            26.535             17.790 
[1] "4.9 - 93.4 (26.5)" "0.3 - 85.3 (17.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"16Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D28V2, continuous

Clustering(29) Variable = 17P GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                 0  1
  17P GAIN MUTATED    5  4
  17P GAIN WILD-TYPE 17 29
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                 46 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 4                 29 
$`17P GAIN MUTATED`
TCGA-N5-A4RV TCGA-N6-A4VF TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N9-A4Q1 
       59.70        17.16        13.38        13.74        26.70        67.17 
TCGA-N9-A4Q7 TCGA-NA-A4QW TCGA-ND-A4W6 
       19.86        74.37        10.42 

$`17P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F 
       22.52        29.95        69.63        50.17        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VG TCGA-N7-A4Y0 
       17.42        19.63         3.68         9.57        39.75        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
        0.26        12.43        26.63        27.25        25.68        15.48 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q8 
       18.81         9.70        21.93        54.97        35.80        15.81 
TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 
       93.40        27.39         3.75        17.79         6.67        85.35 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 
       23.47        15.16         5.49         9.80        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        14.53        31.20         5.42 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             10.42               0.26 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             74.37              93.40 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            19.860             17.935 
[1] "10.4 - 74.4 (19.9)" "0.3 - 93.4 (17.9)" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"17P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"17P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"17P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D29V2, continuous

Clustering(30) Variable = 17Q GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                 0  1
  17Q GAIN MUTATED    7 11
  17Q GAIN WILD-TYPE 15 22
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                18                 37 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                11                 22 
$`17Q GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y5 
       18.08        50.17        59.70         9.57        17.16         0.26 
TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N9-A4PZ TCGA-N9-A4Q1 
       13.38        13.74        27.25        26.70        21.93        67.17 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QW TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA 
       35.80        19.86        74.37         3.75        10.42        23.47 

$`17Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        47.31         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC 
       29.95        69.63        14.70        11.87        17.42        19.63 
TCGA-N6-A4VD TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PO 
        3.68        39.75        25.35        12.43        26.63        25.68 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QV 
       15.48        18.81         9.70        54.97        15.81        93.40 
TCGA-NA-A4QX TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF 
       27.39        17.79         6.67        85.35        15.16         5.49 
TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW 
        9.80        14.86         2.66         5.49        14.53        31.20 
TCGA-QM-A5NM 
        5.42 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.26               2.66 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             74.37              93.40 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            20.895             17.420 
[1] "0.3 - 74.4 (20.9)" "2.7 - 93.4 (17.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"17Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D30V2, continuous

Clustering(31) Variable = 18P GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                 0  1
  18P GAIN MUTATED    8 10
  18P GAIN WILD-TYPE 14 23
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                 37 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                10                 23 
$`18P GAIN MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       24.00        69.63        50.17        59.70        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A59B 
       17.42        19.63         9.57        17.16        39.75        13.38 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-NA-A4R0 TCGA-ND-A4WF 
       27.25        25.68        21.93        67.17        17.79         5.49 

$`18P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.31         4.67        47.31        18.08         4.87        22.52 
TCGA-N5-A4RS TCGA-N6-A4VD TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI 
       29.95         3.68        25.35         0.26        12.43        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q3 
       13.74        26.70        15.48        18.81         9.70        54.97 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX 
       35.80        19.86        15.81        93.40        74.37        27.39 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        3.75         6.67        85.35        10.42        23.47        15.16 
TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW 
        9.80        14.86         2.66         5.49        14.53        31.20 
TCGA-QM-A5NM 
        5.42 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              5.49               0.26 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             69.63              93.40 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             20.78              15.81 
[1] "5.5 - 69.6 (20.8)" "0.3 - 93.4 (15.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"18P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"18P GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"18P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D31V2, continuous

Clustering(32) Variable = 18Q GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                 0  1
  18Q GAIN MUTATED    5  9
  18Q GAIN WILD-TYPE 17 24
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                14                 41 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 9                 24 
$`18Q GAIN MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VE 
       47.31         4.87        50.17        14.70        11.87         9.57 
TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A59B TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N9-A4PZ 
       17.16        39.75        13.38        27.25        25.68        21.93 
TCGA-NA-A4R0 TCGA-ND-A4WF 
       17.79         5.49 

$`18Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.31         4.67        18.08        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N7-A4Y0 
       69.63        59.70        17.42        19.63         3.68        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP 
        0.26        12.43        26.63        13.74        26.70        15.48 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       18.81         9.70        67.17        54.97        35.80        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       15.81        93.40        74.37        27.39         3.75         6.67 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4WX 
       85.35        10.42        23.47        15.16         9.80        14.86 
TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        2.66         5.49        14.53        31.20         5.42 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              4.87               0.26 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             50.17              93.40 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            17.475             18.810 
[1] "4.9 - 50.2 (17.5)" "0.3 - 93.4 (18.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"18Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D32V2, continuous

Clustering(33) Variable = 19P GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                 0  1
  19P GAIN MUTATED   12 11
  19P GAIN WILD-TYPE 10 22
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                23                 32 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                11                 22 
$`19P GAIN MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N6-A4VG TCGA-N7-A4Y5 
       24.00        59.70        19.63         9.57        39.75         0.26 
TCGA-N7-A59B TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q4 
       13.38        27.25        25.68        15.48        18.81        35.80 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.37        27.39         3.75        17.79        10.42        23.47 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
       14.86         2.66         5.49        14.53         5.42 

$`19P GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.31         4.67        47.31        18.08         4.87        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       29.95        69.63        50.17        14.70        11.87        17.42 
TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PL 
        3.68        17.16        25.35        12.43        26.63        13.74 
TCGA-N8-A4PN TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q7 
       26.70         9.70        21.93        67.17        54.97        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF 
       15.81        93.40         6.67        85.35        15.16         5.49 
TCGA-NF-A4WU TCGA-NG-A4VW 
        9.80        31.20 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.26               3.68 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             74.37              93.40 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             17.79              18.97 
[1] "0.3 - 74.4 (17.8)" "3.7 - 93.4 (19.0)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "19P GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "19P GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "19P GAIN MUTATED"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "19P GAIN MUTATED" 
[1] "hr=" "1.2"
D33V2, continuous

Clustering(34) Variable = 19Q GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                 0  1
  19Q GAIN MUTATED   12 15
  19Q GAIN WILD-TYPE 10 18
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                27                 28 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                15                 18 
$`19Q GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4VC TCGA-N6-A4VE 
       18.08        24.00        59.70        14.70        19.63         9.57 
TCGA-N6-A4VG TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       39.75         0.26        12.43        13.74        27.25        25.68 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q4 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       15.48        18.81        35.80        74.37        27.39         3.75 
TCGA-NA-A4R0 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NF-A4X2 
       17.79        85.35        10.42        23.47        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
        5.49        14.53         5.42 

$`19Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS 
       52.31         4.67        47.31         4.87        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VD TCGA-N6-A4VF 
       69.63        50.17        11.87        17.42         3.68        17.16 
TCGA-N7-A4Y0 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A56S TCGA-N9-A4PZ 
       25.35        13.38        26.63        26.70         9.70        21.93 
TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4R1 
       67.17        54.97        19.86        15.81        93.40         6.67 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NG-A4VW 
       15.16         5.49         9.80        31.20 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.26               3.68 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             85.35              93.40 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            17.790             20.895 
[1] "0.3 - 85.3 (17.8)" "3.7 - 93.4 (20.9)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "19Q GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "19Q GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "19Q GAIN MUTATED" 
[1] "hr=" "1"  
D34V2, continuous

Clustering(35) Variable = 20P GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                 0  1
  20P GAIN MUTATED   14 23
  20P GAIN WILD-TYPE  8 10
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                37                 18 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                23                 10 
$`20P GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RS 
       52.31         4.67        47.31         4.87        24.00        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       69.63        50.17        59.70        14.70        11.87        17.42 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PL 
        9.57        17.16        25.35        12.43        13.38        13.74 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q4 
       27.25        26.70        25.68        21.93        67.17        35.80 
TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
       19.86        15.81        27.39         3.75         6.67        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A5CP TCGA-NG-A4VU 
       10.42        23.47         5.49        14.86         5.49        14.53 
TCGA-QM-A5NM 
        5.42 

$`20P GAIN WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VG TCGA-N7-A4Y5 
       18.08        22.52        19.63         3.68        39.75         0.26 
TCGA-N8-A4PI TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q3 TCGA-NA-A4QV 
       26.63        15.48        18.81         9.70        54.97        93.40 
TCGA-NA-A4QW TCGA-NA-A4R0 TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NG-A4VW 
       74.37        17.79        15.16         9.80         2.66        31.20 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              3.75               0.26 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             85.35              93.40 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            17.420             18.445 
[1] "3.8 - 85.3 (17.4)" "0.3 - 93.4 (18.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "20P GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "20P GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "20P GAIN MUTATED" 
[1] "hr=" "1.1"
D35V2, continuous

Clustering(36) Variable = 20Q GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                 0  1
  20Q GAIN MUTATED   18 26
  20Q GAIN WILD-TYPE  4  7
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                44                 11 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                26                  7 
$`20Q GAIN MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 
       17.42         9.57        17.16        39.75        25.35         0.26 
TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       12.43        13.38        26.63        13.74        27.25        26.70 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       25.68        18.81        21.93        54.97        35.80        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 
       15.81        93.40        27.39         3.75        17.79         6.67 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A5CP 
       85.35        10.42        23.47         5.49        14.86         5.49 
TCGA-NG-A4VU TCGA-QM-A5NM 
       14.53         5.42 

$`20Q GAIN WILD-TYPE`
TCGA-N5-A4RO TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4Q1 
       22.52        19.63         3.68        15.48         9.70        67.17 
TCGA-NA-A4QW TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NG-A4VW 
       74.37        15.16         9.80         2.66        31.20 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.26               2.66 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             93.40              74.37 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            18.445             15.480 
[1] "0.3 - 93.4 (18.4)" "2.7 - 74.4 (15.5)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "20Q GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "20Q GAIN MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
  "20Q GAIN MUTATED" 
[1] "hr=" "1.1"
D36V2, continuous

Clustering(37) Variable = 21Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                 0  1
  21Q GAIN MUTATED    7 10
  21Q GAIN WILD-TYPE 15 23
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                17                 38 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                10                 23 
$`21Q GAIN MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4VE 
       18.08         4.87        69.63        59.70        11.87         9.57 
TCGA-N6-A4VG TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 
       39.75        26.70        25.68        18.81        21.93        67.17 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4R0 TCGA-ND-A4W6 TCGA-ND-A4WF 
       15.81        93.40        17.79        10.42         5.49 

$`21Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.31         4.67        47.31        24.00        22.52        29.95 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VF 
       50.17        14.70        17.42        19.63         3.68        17.16 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL 
       25.35         0.26        12.43        13.38        26.63        13.74 
TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       27.25        15.48         9.70        54.97        35.80        19.86 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA 
       74.37        27.39         3.75         6.67        85.35        23.47 
TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU 
       15.16         9.80        14.86         2.66         5.49        14.53 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.20         5.42 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              4.87               0.26 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             93.40              85.35 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             18.81              17.29 
[1] "4.9 - 93.4 (18.8)" "0.3 - 85.3 (17.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"21Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D37V2, continuous

Clustering(38) Variable = 22Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                 0  1
  22Q GAIN MUTATED    5  2
  22Q GAIN WILD-TYPE 17 31
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 7                 48 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 31 
$`22Q GAIN MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RU TCGA-N5-A59E TCGA-N6-A4VG TCGA-N7-A59B TCGA-NA-A4QW 
       47.31        50.17        14.70        39.75        13.38        74.37 
TCGA-NF-A4WX 
       14.86 

$`22Q GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC 
       29.95        69.63        59.70        11.87        17.42        19.63 
TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 
        3.68         9.57        17.16        25.35         0.26        12.43 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       26.63        13.74        27.25        26.70        25.68        15.48 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 
       18.81         9.70        21.93        67.17        54.97        35.80 
TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
       19.86        15.81        93.40        27.39         3.75        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        6.67        85.35        10.42        23.47        15.16         5.49 
TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        9.80         2.66         5.49        14.53        31.20         5.42 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             13.38               0.26 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             74.37              93.40 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            39.750             17.935 
[1] "13.4 - 74.4 (39.8)" "0.3 - 93.4 (17.9)" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-QM-A5NM 
"22Q GAIN WILD-TYPE" 
[1] "hr=" "3.2"
D38V2, continuous

Clustering(39) Variable = XQ GAIN MUTATION ANALYSIS
D39V1, survival
                   sevent
clus2                0  1
  XQ GAIN MUTATED    4  9
  XQ GAIN WILD-TYPE 18 24
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               13                42 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9                24 
$`XQ GAIN MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59F TCGA-N7-A4Y0 TCGA-N7-A59B 
        4.67        69.63        50.17        11.87        25.35        13.38 
TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N9-A4Q1 TCGA-NA-A4QW TCGA-ND-A4WA TCGA-NG-A4VU 
       26.63        25.68        67.17        74.37        23.47        14.53 
TCGA-NG-A4VW 
       31.20 

$`XQ GAIN WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD 
       29.95        59.70        14.70        17.42        19.63         3.68 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PL 
        9.57        17.16        39.75         0.26        12.43        13.74 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ 
       27.25        26.70        15.48        18.81         9.70        21.93 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX 
       54.97        35.80        19.86        15.81        93.40        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC 
        3.75        17.79         6.67        85.35        10.42        15.16 
TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-QM-A5NM 
        5.49         9.80        14.86         2.66         5.49         5.42 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             4.67              0.26 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            74.37             93.40 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            25.68             17.29 
[1] "4.7 - 74.4 (25.7)" "0.3 - 93.4 (17.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D39V2, continuous

Clustering(40) Variable = 1P LOSS MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                0  1
  1P LOSS MUTATED    3  5
  1P LOSS WILD-TYPE 19 28
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                8                47 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                5                28 
$`1P LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A59E TCGA-N6-A4VE TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ 
        4.67        14.70         9.57        18.81         9.70        21.93 
TCGA-N9-A4Q4 TCGA-NA-A5I1 
       35.80        85.35 

$`1P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 
       29.95        69.63        50.17        59.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 
       19.63         3.68        17.16        39.75        25.35         0.26 
TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       12.43        13.38        26.63        13.74        27.25        26.70 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q7 TCGA-N9-A4Q8 
       25.68        15.48        67.17        54.97        19.86        15.81 
TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 
       93.40        74.37        27.39         3.75        17.79         6.67 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX 
       10.42        23.47        15.16         5.49         9.80        14.86 
TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        2.66         5.49        14.53        31.20         5.42 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             4.67              0.26 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            85.35             93.40 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           16.755            18.080 
[1] "4.7 - 85.3 (16.8)" "0.3 - 93.4 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous

Clustering(41) Variable = 1Q LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                0  1
  1Q LOSS MUTATED    3  5
  1Q LOSS WILD-TYPE 19 28
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                8                47 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                5                28 
$`1Q LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A59E TCGA-N6-A4VE TCGA-N7-A4Y5 TCGA-N8-A4PQ TCGA-N8-A56S 
        4.67        14.70         9.57         0.26        18.81         9.70 
TCGA-N9-A4Q4 TCGA-NA-A5I1 
       35.80        85.35 

$`1Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 
       29.95        69.63        50.17        59.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y8 
       19.63         3.68        17.16        39.75        25.35        12.43 
TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       13.38        26.63        13.74        27.25        26.70        25.68 
TCGA-N8-A4PP TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q7 TCGA-N9-A4Q8 
       15.48        21.93        67.17        54.97        19.86        15.81 
TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 
       93.40        74.37        27.39         3.75        17.79         6.67 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX 
       10.42        23.47        15.16         5.49         9.80        14.86 
TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        2.66         5.49        14.53        31.20         5.42 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.26              2.66 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            85.35             93.40 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            12.20             19.63 
[1] "0.3 - 85.3 (12.2)" "2.7 - 93.4 (19.6)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D41V2, continuous

Clustering(42) Variable = 3P LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                0  1
  3P LOSS MUTATED    8 12
  3P LOSS WILD-TYPE 14 21
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                35 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               12                21 
$`3P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC 
       52.31         4.67        47.31        11.87        17.42        19.63 
TCGA-N7-A4Y5 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP 
        0.26        13.38        26.63        13.74        25.68        15.48 
TCGA-N8-A56S TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QY TCGA-NF-A4WU TCGA-NF-A5CP 
        9.70        35.80        19.86         3.75         9.80         5.49 
TCGA-NG-A4VU TCGA-QM-A5NM 
       14.53         5.42 

$`3P LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       18.08         4.87        24.00        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF 
       50.17        59.70        14.70         3.68         9.57        17.16 
TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       39.75        25.35        12.43        27.25        26.70        18.81 
TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW 
       21.93        67.17        54.97        15.81        93.40        74.37 
TCGA-NA-A4QX TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39        17.79         6.67        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VW 
       15.16         5.49        14.86         2.66        31.20 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.26              2.66 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            52.31             93.40 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           14.135            22.520 
[1] "0.3 - 52.3 (14.1)" "2.7 - 93.4 (22.5)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
[1] "hr=" "1.6"
D42V2, continuous

Clustering(43) Variable = 3Q LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                0  1
  3Q LOSS MUTATED    5  9
  3Q LOSS WILD-TYPE 17 24
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               14                41 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                9                24 
$`3Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N8-A4PI 
       52.31         4.67        47.31        11.87        17.42        26.63 
TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A56S TCGA-N9-A4Q4 TCGA-NA-A4QY TCGA-NF-A4WU 
       13.74        25.68         9.70        35.80         3.75         9.80 
TCGA-NF-A5CP TCGA-NG-A4VU 
        5.49        14.53 

$`3Q LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       18.08         4.87        24.00        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE 
       50.17        59.70        14.70        19.63         3.68         9.57 
TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B 
       17.16        39.75        25.35         0.26        12.43        13.38 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 
       27.25        26.70        15.48        18.81        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX 
       54.97        19.86        15.81        93.40        74.37        27.39 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       17.79         6.67        85.35        10.42        23.47        15.16 
TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        14.86         2.66        31.20         5.42 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             3.75              0.26 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            52.31             93.40 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           14.135            19.630 
[1] "3.8 - 52.3 (14.1)" "0.3 - 93.4 (19.6)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D43V2, continuous

Clustering(44) Variable = 4P LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED   10 20
  4P LOSS WILD-TYPE 12 13
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               30                25 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               20                13 
$`4P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.31         4.67        47.31        18.08         4.87        22.52 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VE 
       50.17        14.70        11.87        17.42        19.63         9.57 
TCGA-N6-A4VG TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PQ 
       39.75         0.26        12.43        13.74        25.68        18.81 
TCGA-N8-A56S TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 
        9.70        54.97        35.80        74.37        27.39         6.67 
TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
       85.35        23.47         5.49         5.49        14.53         5.42 

$`4P LOSS WILD-TYPE`
TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N6-A4VD TCGA-N6-A4VF 
       24.00        29.95        69.63        59.70         3.68        17.16 
TCGA-N7-A4Y0 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP 
       25.35        13.38        26.63        27.25        26.70        15.48 
TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QY 
       21.93        67.17        19.86        15.81        93.40         3.75 
TCGA-NA-A4R0 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 
       17.79        10.42        15.16         9.80        14.86         2.66 
TCGA-NG-A4VW 
       31.20 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.26              2.66 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            85.35             93.40 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            17.75             19.86 
[1] "0.3 - 85.3 (17.8)" "2.7 - 93.4 (19.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
[1] "hr=" "1.4"
D44V2, continuous

Clustering(45) Variable = 4Q LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                0  1
  4Q LOSS MUTATED   10 22
  4Q LOSS WILD-TYPE 12 11
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               32                23 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               22                11 
$`4Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.31         4.67        47.31        18.08         4.87        22.52 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VE 
       50.17        14.70        11.87        17.42        19.63         9.57 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
        0.26        12.43        13.74        25.68        15.48        18.81 
TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-NA-A4QW TCGA-NA-A4QX 
        9.70        67.17        54.97        35.80        74.37        27.39 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NF-A4WX 
        6.67        85.35        10.42        23.47         5.49        14.86 
TCGA-NG-A4VU TCGA-QM-A5NM 
       14.53         5.42 

$`4Q LOSS WILD-TYPE`
TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N6-A4VD TCGA-N6-A4VF 
       24.00        29.95        69.63        59.70         3.68        17.16 
TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN 
       39.75        25.35        13.38        26.63        27.25        26.70 
TCGA-N9-A4PZ TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QY TCGA-NA-A4R0 
       21.93        19.86        15.81        93.40         3.75        17.79 
TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VW 
       15.16         9.80         2.66         5.49        31.20 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.26              2.66 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            85.35             93.40 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            16.45             21.93 
[1] "0.3 - 85.3 (16.5)" "2.7 - 93.4 (21.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
[1] "hr=" "1.6"
D45V2, continuous

Clustering(46) Variable = 5P LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                0  1
  5P LOSS MUTATED    2  7
  5P LOSS WILD-TYPE 20 26
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                46 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                7                26 
$`5P LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N6-A4VC TCGA-N7-A4Y8 TCGA-N8-A4PM 
        4.67         4.87        24.00        19.63        12.43        27.25 
TCGA-N9-A4Q8 TCGA-NA-A4R1 TCGA-ND-A4WA 
       15.81         6.67        23.47 

$`5P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       52.31        47.31        18.08        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VD 
       50.17        59.70        14.70        11.87        17.42         3.68 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A59B 
        9.57        17.16        39.75        25.35         0.26        13.38 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       26.63        13.74        26.70        25.68        15.48        18.81 
TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
        9.70        21.93        67.17        54.97        35.80        19.86 
TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A5I1 
       93.40        74.37        27.39         3.75        17.79        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 
       10.42        15.16         5.49         9.80        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        14.53        31.20         5.42 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             4.67              0.26 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            27.25             93.40 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           15.810            18.445 
[1] "4.7 - 27.2 (15.8)" "0.3 - 93.4 (18.4)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D46V2, continuous

Clustering(47) Variable = 5Q LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED    7 11
  5Q LOSS WILD-TYPE 15 22
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               18                37 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               11                22 
$`5Q LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N7-A4Y5 TCGA-N7-A4Y8 
        4.67         4.87        24.00        69.63         0.26        12.43 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q4 
       27.25        25.68        15.48        21.93        67.17        35.80 
TCGA-N9-A4Q8 TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NG-A4VU 
       15.81         6.67        23.47         9.80         2.66        14.53 

$`5Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU 
       52.31        47.31        18.08        22.52        29.95        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD 
       59.70        14.70        11.87        17.42        19.63         3.68 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A59B TCGA-N8-A4PI 
        9.57        17.16        39.75        25.35        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q3 TCGA-N9-A4Q7 
       13.74        26.70        18.81         9.70        54.97        19.86 
TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A5I1 
       93.40        74.37        27.39         3.75        17.79        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A5CP TCGA-NG-A4VW 
       10.42        15.16         5.49        14.86         5.49        31.20 
TCGA-QM-A5NM 
        5.42 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.26              3.68 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            69.63             93.40 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           15.645            18.810 
[1] "0.3 - 69.6 (15.6)" "3.7 - 93.4 (18.8)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D47V2, continuous

Clustering(48) Variable = 6P LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                0  1
  6P LOSS MUTATED    4  1
  6P LOSS WILD-TYPE 18 32
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                5                50 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                1                32 
$`6P LOSS MUTATED`
TCGA-N5-A59F TCGA-N6-A4VG TCGA-N8-A4PQ TCGA-NA-A4QV TCGA-QM-A5NM 
       11.87        39.75        18.81        93.40         5.42 

$`6P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 
       17.42        19.63         3.68         9.57        17.16        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
        0.26        12.43        13.38        26.63        13.74        27.25 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 
       26.70        25.68        15.48         9.70        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QX 
       54.97        35.80        19.86        15.81        74.37        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        3.75        17.79         6.67        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP 
       15.16         5.49         9.80        14.86         2.66         5.49 
TCGA-NG-A4VU TCGA-NG-A4VW 
       14.53        31.20 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             5.42              0.26 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            93.40             85.35 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           18.810            17.935 
[1] "5.4 - 93.4 (18.8)" "0.3 - 85.3 (17.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
[1] "hr=" "3.6"
D48V2, continuous

Clustering(49) Variable = 6Q LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                0  1
  6Q LOSS MUTATED    4  2
  6Q LOSS WILD-TYPE 18 31
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                6                49 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                2                31 
$`6Q LOSS MUTATED`
TCGA-N5-A59F TCGA-N6-A4VG TCGA-N8-A4PQ TCGA-NA-A4QV TCGA-NA-A4QY TCGA-QM-A5NM 
       11.87        39.75        18.81        93.40         3.75         5.42 

$`6Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 
       17.42        19.63         3.68         9.57        17.16        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
        0.26        12.43        13.38        26.63        13.74        27.25 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 
       26.70        25.68        15.48         9.70        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QX 
       54.97        35.80        19.86        15.81        74.37        27.39 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       17.79         6.67        85.35        10.42        23.47        15.16 
TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU 
        5.49         9.80        14.86         2.66         5.49        14.53 
TCGA-NG-A4VW 
       31.20 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             3.75              0.26 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            93.40             85.35 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            15.34             18.08 
[1] "3.8 - 93.4 (15.3)" "0.3 - 85.3 (18.1)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
[1] "hr=" "1.8"
D49V2, continuous

Clustering(50) Variable = 7P LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                0  1
  7P LOSS MUTATED    6  7
  7P LOSS WILD-TYPE 16 26
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               13                42 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                7                26 
$`7P LOSS MUTATED`
TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y5 
       14.70        11.87        19.63         9.57        17.16         0.26 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QW 
       27.25        25.68        18.81        54.97        15.81        74.37 
TCGA-NF-A4WU 
        9.80 

$`7P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N6-A4V9 
       22.52        29.95        69.63        50.17        59.70        17.42 
TCGA-N6-A4VD TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI 
        3.68        39.75        25.35        12.43        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 
       13.74        26.70        15.48         9.70        21.93        67.17 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
       35.80        19.86        93.40        27.39         3.75        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        6.67        85.35        10.42        23.47        15.16         5.49 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.86         2.66         5.49        14.53        31.20         5.42 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.26              2.66 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            74.37             93.40 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            17.16             18.97 
[1] "0.3 - 74.4 (17.2)" "2.7 - 93.4 (19.0)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D50V2, continuous

Clustering(51) Variable = 7Q LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                0  1
  7Q LOSS MUTATED    4  9
  7Q LOSS WILD-TYPE 18 24
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               13                42 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9                24 
$`7Q LOSS MUTATED`
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N7-A4Y5 
       50.17        14.70        11.87        19.63         9.57         0.26 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4Q8 TCGA-ND-A4W6 TCGA-NF-A4WU 
       27.25        25.68        18.81        15.81        10.42         9.80 
TCGA-NG-A4VU 
       14.53 

$`7Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N6-A4V9 TCGA-N6-A4VD 
       22.52        29.95        69.63        59.70        17.42         3.68 
TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI 
       17.16        39.75        25.35        12.43        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 
       13.74        26.70        15.48         9.70        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX 
       54.97        35.80        19.86        93.40        74.37        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC 
        3.75        17.79         6.67        85.35        23.47        15.16 
TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        14.86         2.66         5.49        31.20         5.42 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.26              2.66 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            50.17             93.40 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           14.700            20.895 
[1] "0.3 - 50.2 (14.7)" "2.7 - 93.4 (20.9)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D51V2, continuous

Clustering(52) Variable = 8P LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                0  1
  8P LOSS MUTATED    8 14
  8P LOSS WILD-TYPE 14 19
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               22                33 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               14                19 
$`8P LOSS MUTATED`
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VC 
       24.00        22.52        50.17        14.70        11.87        19.63 
TCGA-N6-A4VG TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4PZ 
       39.75        26.70        25.68        15.48         9.70        21.93 
TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QX 
       67.17        54.97        35.80        19.86        15.81        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A5I1 TCGA-NG-A4VU 
        3.75        17.79        85.35        14.53 

$`8P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS 
       52.31         4.67        47.31        18.08         4.87        29.95 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N6-A4V9 TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF 
       69.63        59.70        17.42         3.68         9.57        17.16 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL 
       25.35         0.26        12.43        13.38        26.63        13.74 
TCGA-N8-A4PM TCGA-N8-A4PQ TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4R1 TCGA-ND-A4W6 
       27.25        18.81        93.40        74.37         6.67        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 
       23.47        15.16         5.49         9.80        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.20         5.42 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             3.75              0.26 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            85.35             93.40 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           22.225            15.160 
[1] "3.8 - 85.3 (22.2)" "0.3 - 93.4 (15.2)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous

Clustering(53) Variable = 8Q LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                0  1
  8Q LOSS MUTATED    3  6
  8Q LOSS WILD-TYPE 19 27
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                9                46 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                6                27 
$`8Q LOSS MUTATED`
TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A59F TCGA-N6-A4VG TCGA-N8-A56S TCGA-N9-A4PZ 
       22.52        50.17        11.87        39.75         9.70        21.93 
TCGA-N9-A4Q3 TCGA-N9-A4Q7 TCGA-NA-A4QX 
       54.97        19.86        27.39 

$`8Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4V9 TCGA-N6-A4VC 
       29.95        69.63        59.70        14.70        17.42        19.63 
TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 
        3.68         9.57        17.16        25.35         0.26        12.43 
TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       13.38        26.63        13.74        27.25        26.70        25.68 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-N9-A4Q8 TCGA-NA-A4QV 
       15.48        18.81        67.17        35.80        15.81        93.40 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
       74.37         3.75        17.79         6.67        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 
       23.47        15.16         5.49         9.80        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        14.53        31.20         5.42 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             9.70              0.26 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            54.97             93.40 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            22.52             17.29 
[1] "9.7 - 55.0 (22.5)" "0.3 - 93.4 (17.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous

Clustering(54) Variable = 9P LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                0  1
  9P LOSS MUTATED   15 18
  9P LOSS WILD-TYPE  7 15
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               33                22 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               18                15 
$`9P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       52.31        18.08        59.70        14.70        11.87        17.42 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PM 
        9.57        17.16        39.75         0.26        12.43        27.25 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       26.70        25.68        18.81         9.70        67.17        54.97 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX 
       35.80        19.86        15.81        93.40        74.37        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NF-A4X2 
        3.75        17.79         6.67        23.47        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
        5.49        14.53         5.42 

$`9P LOSS WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
        4.67        47.31         4.87        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N7-A4Y0 TCGA-N7-A59B 
       69.63        50.17        19.63         3.68        25.35        13.38 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N9-A4PZ TCGA-NA-A5I1 TCGA-ND-A4W6 
       26.63        13.74        15.48        21.93        85.35        10.42 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NG-A4VW 
       15.16         5.49         9.80        31.20 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.26              3.68 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            93.40             85.35 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            17.79             20.78 
[1] "0.3 - 93.4 (17.8)" "3.7 - 85.3 (20.8)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
[1] "hr=" "1.3"
D54V2, continuous

Clustering(55) Variable = 9Q LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                0  1
  9Q LOSS MUTATED   18 20
  9Q LOSS WILD-TYPE  4 13
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               38                17 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               20                13 
$`9Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N5-A59E 
       52.31        47.31        18.08        24.00        59.70        14.70 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y5 
       11.87        17.42         9.57        17.16        39.75         0.26 
TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       12.43        13.38        27.25        26.70        25.68        18.81 
TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
        9.70        21.93        67.17        54.97        35.80        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
       15.81        93.40        74.37        27.39         3.75        17.79 
TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP 
        6.67        10.42        23.47        14.86         2.66         5.49 
TCGA-NG-A4VU TCGA-QM-A5NM 
       14.53         5.42 

$`9Q LOSS WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
        4.67         4.87        22.52        29.95        69.63        50.17 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N7-A4Y0 TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP 
       19.63         3.68        25.35        26.63        13.74        15.48 
TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NG-A4VW 
       85.35        15.16         5.49         9.80        31.20 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.26              3.68 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            93.40             85.35 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           17.935            19.630 
[1] "0.3 - 93.4 (17.9)" "3.7 - 85.3 (19.6)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
[1] "hr=" "1.4"
D55V2, continuous

Clustering(56) Variable = 10P LOSS MUTATION ANALYSIS
D56V1, survival
                    sevent
clus2                 0  1
  10P LOSS MUTATED   10 13
  10P LOSS WILD-TYPE 12 20
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                 32 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                13                 20 
$`10P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU 
       52.31         4.67         4.87        24.00        22.52        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N6-A4V9 TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y8 
       59.70        14.70        17.42         9.57        17.16        12.43 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N9-A4PZ TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 
       27.25        25.68        21.93        35.80        19.86        15.81 
TCGA-NA-A4QW TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-QM-A5NM 
       74.37        17.79         6.67        85.35         5.42 

$`10P LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59F TCGA-N6-A4VC 
       47.31        18.08        29.95        69.63        11.87        19.63 
TCGA-N6-A4VD TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A59B TCGA-N8-A4PI 
        3.68        39.75        25.35         0.26        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q1 
       13.74        26.70        15.48        18.81         9.70        67.17 
TCGA-N9-A4Q3 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA 
       54.97        93.40        27.39         3.75        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP 
       15.16         5.49         9.80        14.86         2.66         5.49 
TCGA-NG-A4VU TCGA-NG-A4VW 
       14.53        31.20 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              4.67               0.26 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             85.35              93.40 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             19.86              16.78 
[1] "4.7 - 85.3 (19.9)" "0.3 - 93.4 (16.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "10P LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "10P LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "10P LOSS MUTATED" 
[1] "hr=" "1.2"
D56V2, continuous

Clustering(57) Variable = 10Q LOSS MUTATION ANALYSIS
D57V1, survival
                    sevent
clus2                 0  1
  10Q LOSS MUTATED    7 14
  10Q LOSS WILD-TYPE 15 19
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                21                 34 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                14                 19 
$`10Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N6-A4V9 
       52.31         4.67        18.08         4.87        22.52        17.42 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y8 TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N9-A4PZ 
        9.57        17.16        12.43        27.25        25.68        21.93 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QX TCGA-NA-A4R0 TCGA-NA-A4R1 
       35.80        19.86        15.81        27.39        17.79         6.67 
TCGA-NA-A5I1 TCGA-NF-A5CP TCGA-QM-A5NM 
       85.35         5.49         5.42 

$`10Q LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
       47.31        24.00        29.95        69.63        50.17        59.70 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VG TCGA-N7-A4Y0 
       14.70        11.87        19.63         3.68        39.75        25.35 
TCGA-N7-A4Y5 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP 
        0.26        13.38        26.63        13.74        26.70        15.48 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-NA-A4QV TCGA-NA-A4QW 
       18.81         9.70        67.17        54.97        93.40        74.37 
TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU 
        3.75        10.42        23.47        15.16         5.49         9.80 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VU TCGA-NG-A4VW 
       14.86         2.66        14.53        31.20 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              4.67               0.26 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             85.35              93.40 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             17.79              19.22 
[1] "4.7 - 85.3 (17.8)" "0.3 - 93.4 (19.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "10Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "10Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "10Q LOSS MUTATED" 
[1] "hr=" "1.4"
D57V2, continuous

Clustering(58) Variable = 11P LOSS MUTATION ANALYSIS
D58V1, survival
                    sevent
clus2                 0  1
  11P LOSS MUTATED    7 19
  11P LOSS WILD-TYPE 15 14
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                26                 29 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                19                 14 
$`11P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A59E 
       52.31         4.67         4.87        22.52        50.17        14.70 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VG TCGA-N7-A4Y5 TCGA-N8-A4PI 
       11.87        17.42        19.63        39.75         0.26        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q4 TCGA-NA-A4R0 
       13.74        27.25         9.70        21.93        35.80        17.79 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NF-A4WU 
        6.67        85.35        10.42        23.47         5.49         9.80 
TCGA-NF-A4WX TCGA-NF-A5CP 
       14.86         5.49 

$`11P LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV 
       47.31        18.08        24.00        29.95        69.63        59.70 
TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N7-A59B 
        3.68         9.57        17.16        25.35        12.43        13.38 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       26.70        25.68        15.48        18.81        67.17        54.97 
TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       19.86        15.81        93.40        74.37        27.39         3.75 
TCGA-ND-A4WC TCGA-NF-A4X2 TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         2.66        14.53        31.20         5.42 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.26               2.66 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             85.35              93.40 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             16.14              19.86 
[1] "0.3 - 85.3 (16.1)" "2.7 - 93.4 (19.9)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"11P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"11P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"11P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D58V2, continuous

Clustering(59) Variable = 11Q LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                 0  1
  11Q LOSS MUTATED    8 16
  11Q LOSS WILD-TYPE 14 17
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                 31 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                16                 17 
$`11Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RU 
       52.31         4.67        47.31         4.87        22.52        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VG 
       59.70        14.70        11.87        17.42        19.63        39.75 
TCGA-N7-A4Y5 TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N9-A4PZ TCGA-N9-A4Q4 TCGA-NA-A4R0 
        0.26        13.74        25.68        21.93        35.80        17.79 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A5CP 
       85.35        10.42        23.47         5.49        14.86         5.49 

$`11Q LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N6-A4VD TCGA-N6-A4VE 
       18.08        24.00        29.95        69.63         3.68         9.57 
TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PM 
       17.16        25.35        12.43        13.38        26.63        27.25 
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       26.70        15.48        18.81         9.70        67.17        54.97 
TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       19.86        15.81        93.40        74.37        27.39         3.75 
TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NG-A4VU TCGA-NG-A4VW 
        6.67        15.16         9.80         2.66        14.53        31.20 
TCGA-QM-A5NM 
        5.42 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.26               2.66 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             85.35              93.40 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             18.71              18.08 
[1] "0.3 - 85.3 (18.7)" "2.7 - 93.4 (18.1)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"11Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D59V2, continuous

Clustering(60) Variable = 12P LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                 0  1
  12P LOSS MUTATED    6  7
  12P LOSS WILD-TYPE 16 26
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                13                 42 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 7                 26 
$`12P LOSS MUTATED`
TCGA-N5-A59F TCGA-N6-A4VG TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       11.87        39.75        26.63        26.70        25.68        15.48 
TCGA-N8-A4PQ TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       18.81        15.81        93.40        74.37        27.39         3.75 
TCGA-NA-A4R1 
        6.67 

$`12P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 
       17.42        19.63         3.68         9.57        17.16        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S 
        0.26        12.43        13.38        13.74        27.25         9.70 
TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4R0 
       21.93        67.17        54.97        35.80        19.86        17.79 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU 
       85.35        10.42        23.47        15.16         5.49         9.80 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.86         2.66         5.49        14.53        31.20         5.42 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              3.75               0.26 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             93.40              85.35 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            25.680             17.605 
[1] "3.8 - 93.4 (25.7)" "0.3 - 85.3 (17.6)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"12P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"12P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"12P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D60V2, continuous

Clustering(61) Variable = 12Q LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                 0  1
  12Q LOSS MUTATED    4  9
  12Q LOSS WILD-TYPE 18 24
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                13                 42 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 9                 24 
$`12Q LOSS MUTATED`
TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VG TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PO 
       14.70        11.87        39.75        12.43        26.63        25.68 
TCGA-N8-A4PP TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       15.48        15.81        74.37        27.39         3.75         6.67 
TCGA-NF-A4WU 
        9.80 

$`12Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N6-A4V9 
       22.52        29.95        69.63        50.17        59.70        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y5 
       19.63         3.68         9.57        17.16        25.35         0.26 
TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N8-A56S 
       13.38        13.74        27.25        26.70        18.81         9.70 
TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV 
       21.93        67.17        54.97        35.80        19.86        93.40 
TCGA-NA-A4R0 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       17.79        85.35        10.42        23.47        15.16         5.49 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.86         2.66         5.49        14.53        31.20         5.42 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              3.75               0.26 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             74.37              93.40 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             15.48              19.22 
[1] "3.8 - 74.4 (15.5)" "0.3 - 93.4 (19.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"12Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D61V2, continuous

Clustering(62) Variable = 13Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                 0  1
  13Q LOSS MUTATED   11 14
  13Q LOSS WILD-TYPE 11 19
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                25                 30 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                14                 19 
$`13Q LOSS MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU 
        4.67         4.87        24.00        22.52        69.63        50.17 
TCGA-N5-A4RV TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A59B TCGA-N8-A4PI 
       59.70         9.57        17.16        39.75        13.38        26.63 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q7 TCGA-NA-A4QV 
       25.68        15.48         9.70        21.93        19.86        93.40 
TCGA-NA-A4QX TCGA-NA-A4R0 TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NF-A5CP 
       27.39        17.79         5.49         9.80         2.66         5.49 
TCGA-QM-A5NM 
        5.42 

$`13Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A59E TCGA-N5-A59F 
       52.31        47.31        18.08        29.95        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 
       17.42        19.63         3.68        25.35         0.26        12.43 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       13.74        27.25        26.70        18.81        67.17        54.97 
TCGA-N9-A4Q4 TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
       35.80        15.81        74.37         3.75         6.67        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NF-A4WX TCGA-NG-A4VU TCGA-NG-A4VW 
       10.42        23.47        15.16        14.86        14.53        31.20 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              2.66               0.26 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             93.40              85.35 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            17.790             18.445 
[1] "2.7 - 93.4 (17.8)" "0.3 - 85.3 (18.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "13Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "13Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "13Q LOSS MUTATED" 
[1] "hr=" "1"  
D62V2, continuous

Clustering(63) Variable = 14Q LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                 0  1
  14Q LOSS MUTATED    8 18
  14Q LOSS WILD-TYPE 14 15
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                26                 29 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                 15 
$`14Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT 
       52.31         4.67        18.08         4.87        22.52        69.63 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VC TCGA-N6-A4VG TCGA-N7-A4Y5 TCGA-N8-A4PI 
       14.70        11.87        19.63        39.75         0.26        26.63 
TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4Q1 
       13.74        25.68        15.48        18.81         9.70        67.17 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QX TCGA-NA-A4R0 TCGA-NA-A5I1 TCGA-ND-A4W6 
       35.80        19.86        27.39        17.79        85.35        10.42 
TCGA-ND-A4WA TCGA-NF-A4WU 
       23.47         9.80 

$`14Q LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N6-A4V9 
       47.31        24.00        29.95        50.17        59.70        17.42 
TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N7-A59B 
        3.68         9.57        17.16        25.35        12.43        13.38 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N9-A4PZ TCGA-N9-A4Q3 TCGA-N9-A4Q8 TCGA-NA-A4QV 
       27.25        26.70        21.93        54.97        15.81        93.40 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX 
       74.37         3.75         6.67        15.16         5.49        14.86 
TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        2.66         5.49        14.53        31.20         5.42 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.26               2.66 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             85.35              93.40 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             19.22              17.16 
[1] "0.3 - 85.3 (19.2)" "2.7 - 93.4 (17.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"14Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D63V2, continuous

Clustering(64) Variable = 15Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                 0  1
  15Q LOSS MUTATED   12 19
  15Q LOSS WILD-TYPE 10 14
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                31                 24 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                19                 14 
$`15Q LOSS MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N6-A4VC 
       47.31         4.87        22.52        69.63        50.17        19.63 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI 
        9.57        17.16        39.75         0.26        12.43        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q1 
       13.74        27.25        25.68        15.48        18.81        67.17 
TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4WA 
       15.81        74.37        27.39         3.75        85.35        23.47 
TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU 
        5.49         9.80        14.86         2.66         5.49        14.53 
TCGA-QM-A5NM 
        5.42 

$`15Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RV 
       52.31         4.67        18.08        24.00        29.95        59.70 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VD TCGA-N7-A4Y0 TCGA-N7-A59B 
       14.70        11.87        17.42         3.68        25.35        13.38 
TCGA-N8-A4PN TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       26.70         9.70        21.93        54.97        35.80        19.86 
TCGA-NA-A4QV TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NG-A4VW 
       93.40        17.79         6.67        10.42        15.16        31.20 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.26               3.68 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             85.35              93.40 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             17.16              18.97 
[1] "0.3 - 85.3 (17.2)" "3.7 - 93.4 (19.0)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "15Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "15Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "15Q LOSS MUTATED" 
[1] "hr=" "1.1"
D64V2, continuous

Clustering(65) Variable = 16P LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                 0  1
  16P LOSS MUTATED   12 19
  16P LOSS WILD-TYPE 10 14
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                31                 24 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                19                 14 
$`16P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT 
       52.31         4.67        47.31        24.00        22.52        69.63 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VE 
       50.17        14.70        11.87        17.42        19.63         9.57 
TCGA-N6-A4VF TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL 
       17.16         0.26        12.43        13.38        26.63        13.74 
TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QW 
       27.25        15.48        18.81        19.86        15.81        74.37 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 
       17.79         6.67        85.35         5.49        14.86         2.66 
TCGA-NG-A4VU 
       14.53 

$`16P LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N6-A4VD TCGA-N6-A4VG 
       18.08         4.87        29.95        59.70         3.68        39.75 
TCGA-N7-A4Y0 TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 
       25.35        26.70        25.68         9.70        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4W6 
       54.97        35.80        93.40        27.39         3.75        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16         9.80         5.49        31.20         5.42 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.26               3.68 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             85.35              93.40 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             17.16              24.41 
[1] "0.3 - 85.3 (17.2)" "3.7 - 93.4 (24.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"16P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"16P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"16P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous

Clustering(66) Variable = 16Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                 0  1
  16Q LOSS MUTATED   13 23
  16Q LOSS WILD-TYPE  9 10
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                36                 19 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                23                 10 
$`16Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        47.31        18.08        24.00        22.52 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC 
       69.63        50.17        14.70        11.87        17.42        19.63 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI 
        9.57        17.16         0.26        12.43        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q7 
       13.74        27.25        26.70        15.48        18.81        19.86 
TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 
       15.81        74.37         3.75        17.79         6.67        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU 
       10.42         5.49        14.86         2.66         5.49        14.53 

$`16Q LOSS WILD-TYPE`
TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N6-A4VD TCGA-N6-A4VG TCGA-N7-A4Y0 
        4.87        29.95        59.70         3.68        39.75        25.35 
TCGA-N8-A4PO TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 
       25.68         9.70        21.93        67.17        54.97        35.80 
TCGA-NA-A4QV TCGA-NA-A4QX TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NG-A4VW 
       93.40        27.39        23.47        15.16         9.80        31.20 
TCGA-QM-A5NM 
        5.42 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.26               3.68 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             85.35              93.40 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            16.485             25.680 
[1] "0.3 - 85.3 (16.5)" "3.7 - 93.4 (25.7)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"16Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"16Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"16Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D66V2, continuous

Clustering(67) Variable = 17P LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED   12 22
  17P LOSS WILD-TYPE 10 11
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                34                 21 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                22                 11 
$`17P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       22.52        69.63        50.17        14.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N6-A4VE TCGA-N6-A4VG TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PM 
       19.63         9.57        39.75         0.26        12.43        27.25 
TCGA-N8-A4PO TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q8 
       25.68         9.70        21.93        54.97        35.80        15.81 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NF-A4WU 
       27.39         3.75        17.79        23.47         5.49         9.80 
TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
        2.66         5.49        14.53         5.42 

$`17P LOSS WILD-TYPE`
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A59B 
       29.95        59.70         3.68        17.16        25.35        13.38 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q1 
       26.63        13.74        26.70        15.48        18.81        67.17 
TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
       19.86        93.40        74.37         6.67        85.35        10.42 
TCGA-ND-A4WC TCGA-NF-A4WX TCGA-NG-A4VW 
       15.16        14.86        31.20 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.26               3.68 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             69.63              93.40 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            17.605             19.860 
[1] "0.3 - 69.6 (17.6)" "3.7 - 93.4 (19.9)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "17P LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "17P LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "17P LOSS MUTATED" 
[1] "hr=" "1.7"
D67V2, continuous

Clustering(68) Variable = 17Q LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                 0  1
  17Q LOSS MUTATED    4 13
  17Q LOSS WILD-TYPE 18 20
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                17                 38 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                13                 20 
$`17Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A59E TCGA-N5-A59F 
       52.31         4.67         4.87        22.52        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VG TCGA-N7-A4Y8 TCGA-N8-A4PO TCGA-N9-A4Q8 
       17.42        19.63        39.75        12.43        25.68        15.81 
TCGA-NA-A4QX TCGA-NA-A4R0 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-QM-A5NM 
       27.39        17.79         5.49        14.53         5.42 

$`17Q LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
       47.31        18.08        24.00        29.95        69.63        50.17 
TCGA-N5-A4RV TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y5 
       59.70         3.68         9.57        17.16        25.35         0.26 
TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP 
       13.38        26.63        13.74        27.25        26.70        15.48 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 
       18.81         9.70        21.93        67.17        54.97        35.80 
TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
       19.86        93.40        74.37         3.75         6.67        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX 
       10.42        23.47        15.16         5.49         9.80        14.86 
TCGA-NF-A4X2 TCGA-NG-A4VW 
        2.66        31.20 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              4.67               0.26 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             52.31              93.40 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            15.810             20.895 
[1] "4.7 - 52.3 (15.8)" "0.3 - 93.4 (20.9)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "17Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "17Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "17Q LOSS MUTATED" 
[1] "hr=" "2.1"
D68V2, continuous

Clustering(69) Variable = 18P LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                 0  1
  18P LOSS MUTATED    8  9
  18P LOSS WILD-TYPE 14 24
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                17                 38 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 9                 24 
$`18P LOSS MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PN TCGA-N8-A4PQ 
       18.08         4.87         0.26        12.43        26.70        18.81 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A5I1 
       54.97        35.80        19.86        93.40        27.39        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A5CP TCGA-NG-A4VU 
       10.42        23.47         9.80         5.49        14.53 

$`18P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.31         4.67        47.31        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 
       69.63        50.17        59.70        14.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 
       19.63         3.68         9.57        17.16        39.75        25.35 
TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       13.38        26.63        13.74        27.25        25.68        15.48 
TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QY 
        9.70        21.93        67.17        15.81        74.37         3.75 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 
       17.79         6.67        15.16         5.49        14.86         2.66 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.20         5.42 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.26               2.66 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             93.40              74.37 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            18.810             17.605 
[1] "0.3 - 93.4 (18.8)" "2.7 - 74.4 (17.6)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"18P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"18P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous

Clustering(70) Variable = 18Q LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                 0  1
  18Q LOSS MUTATED    9 10
  18Q LOSS WILD-TYPE 13 23
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                19                 36 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                10                 23 
$`18Q LOSS MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N6-A4V9 TCGA-N7-A4Y5 TCGA-N7-A4Y8 
       18.08        24.00        22.52        17.42         0.26        12.43 
TCGA-N8-A4PN TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV 
       26.70        67.17        54.97        35.80        19.86        93.40 
TCGA-NA-A4QX TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A5CP 
       27.39        85.35        10.42        23.47         9.80         5.49 
TCGA-NG-A4VU 
       14.53 

$`18Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RT 
       52.31         4.67        47.31         4.87        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4VC TCGA-N6-A4VD 
       50.17        59.70        14.70        11.87        19.63         3.68 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A59B TCGA-N8-A4PI 
        9.57        17.16        39.75        25.35        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       13.74        27.25        25.68        15.48        18.81         9.70 
TCGA-N9-A4PZ TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 
       21.93        15.81        74.37         3.75        17.79         6.67 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        14.86         2.66        31.20         5.42 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.26               2.66 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             93.40              74.37 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            22.520             16.485 
[1] "0.3 - 93.4 (22.5)" "2.7 - 74.4 (16.5)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"18Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D70V2, continuous

Clustering(71) Variable = 19P LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                 0  1
  19P LOSS MUTATED    6  9
  19P LOSS WILD-TYPE 16 24
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                15                 40 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 9                 24 
$`19P LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS 
       52.31         4.67        47.31        18.08         4.87        29.95 
TCGA-N5-A4RT TCGA-N6-A4V9 TCGA-N8-A4PL TCGA-N8-A56S TCGA-N9-A4Q7 TCGA-N9-A4Q8 
       69.63        17.42        13.74         9.70        19.86        15.81 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-NF-A4WU 
        6.67        85.35         9.80 

$`19P LOSS WILD-TYPE`
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       24.00        22.52        50.17        59.70        14.70        11.87 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 
       19.63         3.68         9.57        17.16        39.75        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN 
        0.26        12.43        13.38        26.63        27.25        26.70 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       25.68        15.48        18.81        21.93        67.17        54.97 
TCGA-N9-A4Q4 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 
       35.80        93.40        74.37        27.39         3.75        17.79 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 
       10.42        23.47        15.16         5.49        14.86         2.66 
TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        14.53        31.20         5.42 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              4.67               0.26 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             85.35              93.40 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             17.42              19.22 
[1] "4.7 - 85.3 (17.4)" "0.3 - 93.4 (19.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"19P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"19P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"19P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D71V2, continuous

Clustering(72) Variable = 19Q LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                 0  1
  19Q LOSS MUTATED    5  8
  19Q LOSS WILD-TYPE 17 25
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                13                 42 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 8                 25 
$`19Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RT 
       52.31         4.67        47.31         4.87        29.95        69.63 
TCGA-N6-A4V9 TCGA-N7-A59B TCGA-N8-A56S TCGA-N9-A4Q8 TCGA-NA-A4R1 TCGA-ND-A4WF 
       17.42        13.38         9.70        15.81         6.67         5.49 
TCGA-NF-A4WU 
        9.80 

$`19Q LOSS WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       18.08        24.00        22.52        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG 
       11.87        19.63         3.68         9.57        17.16        39.75 
TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       25.35         0.26        12.43        26.63        13.74        27.25 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 
       26.70        25.68        15.48        18.81        21.93        67.17 
TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX 
       54.97        35.80        19.86        93.40        74.37        27.39 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        3.75        17.79        85.35        10.42        23.47        15.16 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.86         2.66         5.49        14.53        31.20         5.42 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              4.67               0.26 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             69.63              93.40 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            13.380             19.745 
[1] "4.7 - 69.6 (13.4)" "0.3 - 93.4 (19.7)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"19Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D72V2, continuous

Clustering(73) Variable = 20P LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                 0  1
  20P LOSS MUTATED    3  4
  20P LOSS WILD-TYPE 19 29
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                 48 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 29 
$`20P LOSS MUTATED`
TCGA-N5-A4RJ TCGA-N6-A4VG TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4R0 
       18.08        39.75        15.48         9.70        74.37        17.79 
TCGA-NF-A4WU 
        9.80 

$`20P LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        47.31         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A4Y0 
       17.42        19.63         3.68         9.57        17.16        25.35 
TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
        0.26        12.43        13.38        26.63        13.74        27.25 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 
       26.70        25.68        18.81        21.93        67.17        54.97 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY 
       35.80        19.86        15.81        93.40        27.39         3.75 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        6.67        85.35        10.42        23.47        15.16         5.49 
TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.86         2.66         5.49        14.53        31.20         5.42 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              9.70               0.26 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             74.37              93.40 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             17.79              19.22 
[1] "9.7 - 74.4 (17.8)" "0.3 - 93.4 (19.2)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"20P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"20P LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"20P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D73V2, continuous

Clustering(74) Variable = 20Q LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                 0  1
  20Q LOSS MUTATED    2  2
  20Q LOSS WILD-TYPE 20 31
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 4                 51 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 31 
$`20Q LOSS MUTATED`
TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NF-A4WU 
       15.48         9.70        74.37         9.80 

$`20Q LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.31         4.67        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF 
       11.87        17.42        19.63         3.68         9.57        17.16 
TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI 
       39.75        25.35         0.26        12.43        13.38        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4PZ 
       13.74        27.25        26.70        25.68        18.81        21.93 
TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV 
       67.17        54.97        35.80        19.86        15.81        93.40 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 
       27.39         3.75        17.79         6.67        85.35        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP 
       23.47        15.16         5.49        14.86         2.66         5.49 
TCGA-NG-A4VU TCGA-NG-A4VW TCGA-QM-A5NM 
       14.53        31.20         5.42 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              9.70               0.26 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             74.37              93.40 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             12.64              18.81 
[1] "9.7 - 74.4 (12.6)" "0.3 - 93.4 (18.8)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"20Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D74V2, continuous

Clustering(75) Variable = 21Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                 0  1
  21Q LOSS MUTATED    5 12
  21Q LOSS WILD-TYPE 17 21
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                17                 38 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                12                 21 
$`21Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RU TCGA-N5-A59E TCGA-N6-A4VC TCGA-N7-A4Y5 TCGA-N7-A4Y8 
       52.31        50.17        14.70        19.63         0.26        12.43 
TCGA-N7-A59B TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4Q4 
       13.38        13.74        27.25        15.48         9.70        35.80 
TCGA-N9-A4Q7 TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NF-A5CP TCGA-NG-A4VU 
       19.86        23.47        14.86         5.49        14.53 

$`21Q LOSS WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
        4.67        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VD 
       29.95        69.63        59.70        11.87        17.42         3.68 
TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N8-A4PI TCGA-N8-A4PN 
        9.57        17.16        39.75        25.35        26.63        26.70 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q8 
       25.68        18.81        21.93        67.17        54.97        15.81 
TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 
       93.40        74.37        27.39         3.75        17.79         6.67 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4X2 
       85.35        10.42        15.16         5.49         9.80         2.66 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.20         5.42 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.26               2.66 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             52.31              93.40 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             14.86              20.37 
[1] "0.3 - 52.3 (14.9)" "2.7 - 93.4 (20.4)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
"21Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D75V2, continuous

Clustering(76) Variable = 22Q LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                 0  1
  22Q LOSS MUTATED   11 22
  22Q LOSS WILD-TYPE 11 11
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                33                 22 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                22                 11 
$`22Q LOSS MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.31         4.67        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VE 
       29.95        59.70        11.87        17.42        19.63         9.57 
TCGA-N6-A4VF TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       17.16         0.26        12.43        26.63        13.74        27.25 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       25.68        15.48         9.70        67.17        35.80        19.86 
TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 
       93.40        27.39         3.75        17.79         6.67        85.35 
TCGA-ND-A4WA TCGA-NF-A4X2 TCGA-QM-A5NM 
       23.47         2.66         5.42 

$`22Q LOSS WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N6-A4VD TCGA-N6-A4VG 
       47.31        69.63        50.17        14.70         3.68        39.75 
TCGA-N7-A4Y0 TCGA-N7-A59B TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q3 
       25.35        13.38        26.70        18.81        21.93        54.97 
TCGA-N9-A4Q8 TCGA-NA-A4QW TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4WU 
       15.81        74.37        10.42        15.16         5.49         9.80 
TCGA-NF-A4WX TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW 
       14.86         5.49        14.53        31.20 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.26               3.68 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             93.40              74.37 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             18.08              17.31 
[1] "0.3 - 93.4 (18.1)" "3.7 - 74.4 (17.3)"
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "22Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "22Q LOSS MUTATED" 
        TCGA-N5-A4RA         TCGA-N5-A4RD         TCGA-N5-A4RF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RJ         TCGA-N5-A4RM         TCGA-N5-A4RN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N5-A4RO         TCGA-N5-A4RS         TCGA-N5-A4RT 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A4RU         TCGA-N5-A4RV         TCGA-N5-A59E 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N5-A59F         TCGA-N6-A4V9         TCGA-N6-A4VC 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N6-A4VD         TCGA-N6-A4VE         TCGA-N6-A4VF 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N6-A4VG         TCGA-N7-A4Y0         TCGA-N7-A4Y5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N7-A4Y8         TCGA-N7-A59B         TCGA-N8-A4PI 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N8-A4PL         TCGA-N8-A4PM         TCGA-N8-A4PN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A4PO         TCGA-N8-A4PP         TCGA-N8-A4PQ 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-N8-A56S         TCGA-N9-A4PZ         TCGA-N9-A4Q1 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-N9-A4Q3         TCGA-N9-A4Q4         TCGA-N9-A4Q7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-N9-A4Q8         TCGA-NA-A4QV         TCGA-NA-A4QW 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-NA-A4QX         TCGA-NA-A4QY         TCGA-NA-A4R0 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-NA-A4R1         TCGA-NA-A5I1         TCGA-ND-A4W6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-ND-A4WA         TCGA-ND-A4WC         TCGA-ND-A4WF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-NF-A4WU         TCGA-NF-A4WX         TCGA-NF-A4X2 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-NF-A5CP         TCGA-NG-A4VU         TCGA-NG-A4VW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-QM-A5NM 
  "22Q LOSS MUTATED" 
[1] "hr=" "1.4"
D76V2, continuous

Clustering(77) Variable = XQ LOSS MUTATION ANALYSIS
D77V1, survival
                   sevent
clus2                0  1
  XQ LOSS MUTATED    7 12
  XQ LOSS WILD-TYPE 15 21
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               19                36 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               12                21 
$`XQ LOSS MUTATED`
TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59E 
       47.31         4.87        24.00        22.52        29.95        14.70 
TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N7-A4Y5 TCGA-N8-A4PP TCGA-N8-A56S TCGA-N9-A4Q3 
       17.42        19.63         0.26        15.48         9.70        54.97 
TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4WF TCGA-NF-A4X2 
       15.81        93.40        27.39         6.67         5.49         2.66 
TCGA-QM-A5NM 
        5.42 

$`XQ LOSS WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
       52.31         4.67        18.08        69.63        50.17        59.70 
TCGA-N5-A59F TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 
       11.87         3.68         9.57        17.16        39.75        25.35 
TCGA-N7-A4Y8 TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       12.43        13.38        26.63        13.74        27.25        26.70 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-N9-A4Q7 
       25.68        18.81        21.93        67.17        35.80        19.86 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.37         3.75        17.79        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A5CP TCGA-NG-A4VU TCGA-NG-A4VW 
       15.16         9.80        14.86         5.49        14.53        31.20 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.26              3.68 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            93.40             85.35 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           15.810            19.335 
[1] "0.3 - 93.4 (15.8)" "3.7 - 85.3 (19.3)"
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RA        TCGA-N5-A4RD        TCGA-N5-A4RF        TCGA-N5-A4RJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N5-A4RM        TCGA-N5-A4RN        TCGA-N5-A4RO        TCGA-N5-A4RS 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-N5-A4RT        TCGA-N5-A4RU        TCGA-N5-A4RV        TCGA-N5-A59E 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-N5-A59F        TCGA-N6-A4V9        TCGA-N6-A4VC        TCGA-N6-A4VD 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N6-A4VE        TCGA-N6-A4VF        TCGA-N6-A4VG        TCGA-N7-A4Y0 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N7-A4Y5        TCGA-N7-A4Y8        TCGA-N7-A59B        TCGA-N8-A4PI 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PL        TCGA-N8-A4PM        TCGA-N8-A4PN        TCGA-N8-A4PO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N8-A4PP        TCGA-N8-A4PQ        TCGA-N8-A56S        TCGA-N9-A4PZ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-N9-A4Q1        TCGA-N9-A4Q3        TCGA-N9-A4Q4        TCGA-N9-A4Q7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-N9-A4Q8        TCGA-NA-A4QV        TCGA-NA-A4QW        TCGA-NA-A4QX 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NA-A4QY        TCGA-NA-A4R0        TCGA-NA-A4R1        TCGA-NA-A5I1 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-ND-A4W6        TCGA-ND-A4WA        TCGA-ND-A4WC        TCGA-ND-A4WF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NF-A4WU        TCGA-NF-A4WX        TCGA-NF-A4X2        TCGA-NF-A5CP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-NG-A4VU        TCGA-NG-A4VW        TCGA-QM-A5NM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
[1] "hr=" "1.4"
D77V2, continuous
> q(save="no")
