
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCS-TP/8282696/UCS-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/8143281/UCS-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=UCS-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=UCS-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/8143281/UCS-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCS-TP/8282696/UCS-TP.mergedcluster.txt"

nPatients in clinical file=57, in cluster file=57, common to both=57
[1]  8 57
[1] "CN_CNMF"
[1] 3
 1  2  3 
22 24 10 
 1  2  3 
22 24 10 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4  5 
12  9 10 13 13 
 1  2  3  4  5 
12  9 10 13 13 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
15 20 12 10 
 1  2  3  4 
15 20 12 10 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
15 11 22  9 
 1  2  3  4 
15 11 22  9 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3  4 
11 22  4 19 
 1  2  3  4 
11 22  4 19 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
 1 27 28 
 2  3 
27 28 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3  4 
11 23  5 17 
 1  2  3  4 
11 23  5 17 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3 
 1 25 30 
 2  3 
25 30 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "NEOPLASM.DISEASESTAGE"                 
 [6] "PATHOLOGY.T.STAGE"                     
 [7] "PATHOLOGY.N.STAGE"                     
 [8] "PATHOLOGY.M.STAGE"                     
 [9] "DCCUPLOADDATE"                         
[10] "GENDER"                                
[11] "RADIATIONTHERAPY"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "GLEASON_SCORE"                         
[14] "PSA_VALUE"                             
[15] "DAYS_TO_PSA"                           
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 57 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM 
          NA           NA           NA         1439           NA           NA 
TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
         730           NA           NA         2118           NA         1816 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE 
          NA           NA          530           NA           NA           NA 
TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A4Y0 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N7-A59B 
          NA         1209           NA           NA           NA          407 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
          NA           NA          829          812          781          471 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 
         572          295           NA           NA         1672         1089 
TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
         604           NA         2841         2262          833           NA 
TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
          NA           NA         2596           NA           NA          461 
TCGA-ND-A4WF TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VU 
          NA          298          452           81           NA           NA 
TCGA-NG-A4VW TCGA-QM-A5NM TCGA-QN-A5NN 
          NA          165           NA 
Variable 1:'AGE':	nDistinctValues=30,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=33,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PATHOLOGY.T.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.N.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 57 columns, 1 survival variables, and 1 non-survival variables.
AGE, nv=30, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1  9 13
  subtype2  9 15
  subtype3  4  5
subtype1 subtype2 subtype3 
      22       24        9 
subtype1 subtype2 subtype3 
      13       15        5 
$subtype1
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       52.31        18.08        24.00        22.52        29.95        69.63 
TCGA-N5-A59E TCGA-N6-A4VE TCGA-N6-A4VG TCGA-N8-A4PN TCGA-N8-A56S TCGA-N9-A4PZ 
       14.70         9.57        39.75        26.70         9.70        21.93 
TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q4 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX 
       67.17        54.97        35.80        93.40        74.37        27.39 
TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-NF-A4WX TCGA-NG-A4VU 
        6.67        23.47        14.86        14.53 

$subtype2
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 
        4.67        47.31         4.87        59.70        11.87        17.42 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VF TCGA-N7-A4Y0 TCGA-N7-A4Y8 TCGA-N7-A59B 
       19.63         3.68        17.16        25.35        12.43        13.38 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N9-A4Q7 TCGA-NA-A4R0 
       26.63        13.74        27.25        15.48        19.86        17.79 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NF-A4WU TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VW 
       10.42        15.16         9.80         2.66         5.49        31.20 

$subtype3
TCGA-N5-A4RU TCGA-N7-A4Y5 TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N9-A4Q8 TCGA-NA-A4QY 
       50.17         0.26        25.68        18.81        15.81         3.75 
TCGA-NA-A5I1 TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35         5.49         5.42 

subtype1 subtype2 subtype3 
    6.67     2.66     0.26 
subtype1 subtype2 subtype3 
   93.40    59.70    85.35 
subtype1 subtype2 subtype3 
   25.35    15.32    15.81 
[1] "6.7 - 93.4 (25.4)" "2.7 - 59.7 (15.3)" "0.3 - 85.3 (15.8)"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[55] "subtype3"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[55] "subtype3"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[55] "subtype3"
D1V2, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2      0 1
  subtype1 4 8
  subtype2 3 6
  subtype3 3 7
  subtype4 6 6
  subtype5 6 7
subtype1 subtype2 subtype3 subtype4 subtype5 
      12        9       10       12       13 
subtype1 subtype2 subtype3 subtype4 subtype5 
       8        6        7        6        7 
$subtype1
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PN 
      102.41        52.31        18.08         0.26        12.43        26.70 
TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NG-A4VU 
       18.81        67.17        35.80        74.37        27.39        14.53 

$subtype2
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
        4.67         4.87        22.52        69.63        50.17        59.70 
TCGA-N5-A59E TCGA-N6-A4V9 TCGA-ND-A4WF 
       14.70        17.42         5.49 

$subtype3
TCGA-N5-A4RF TCGA-N5-A59F TCGA-N7-A4Y0 TCGA-N8-A4PI TCGA-N8-A4PP TCGA-N9-A4Q7 
       47.31        11.87        25.35        26.63        15.48        19.86 
TCGA-NA-A4R0 TCGA-ND-A4WC TCGA-NF-A5CP TCGA-NG-A4VW 
       17.79        15.16         5.49        31.20 

$subtype4
TCGA-N5-A4RN TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A59B TCGA-N8-A4PO 
       24.00         3.68         9.57        17.16        13.38        25.68 
TCGA-N9-A4PZ TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4R1 TCGA-NF-A4X2 TCGA-QM-A5NM 
       21.93        15.81        93.40         6.67         2.66         5.42 

$subtype5
TCGA-N5-A4RS TCGA-N6-A4VC TCGA-N6-A4VG TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S 
       29.95        19.63        39.75        13.74        27.25         9.70 
TCGA-N9-A4Q3 TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WU 
       54.97         3.75        85.35        10.42        23.47         9.80 
TCGA-NF-A4WX 
       14.86 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.26     4.67     5.49     2.66     3.75 
subtype1 subtype2 subtype3 subtype4 subtype5 
  102.41    69.63    47.31    93.40    85.35 
subtype1 subtype2 subtype3 subtype4 subtype5 
  27.045   17.420   18.825   14.595   19.630 
[1] "0.3 - 102.4 (27.0)" "4.7 - 69.6 (17.4)"  "5.5 - 47.3 (18.8)" 
[4] "2.7 - 93.4 (14.6)"  "3.8 - 85.3 (19.6)" 
 [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [7] "subtype4" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
[13] "subtype2" "subtype3" "subtype2" "subtype5" "subtype4" "subtype4"
[19] "subtype4" "subtype5" "subtype3" "subtype1" "subtype1" "subtype4"
[25] "subtype3" "subtype5" "subtype5" "subtype1" "subtype4" "subtype3"
[31] "subtype1" "subtype5" "subtype4" "subtype1" "subtype5" "subtype1"
[37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
[43] "subtype3" "subtype4" "subtype5" "subtype5" "subtype5" "subtype3"
[49] "subtype2" "subtype5" "subtype5" "subtype4" "subtype3" "subtype1"
[55] "subtype3" "subtype4"
 [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [7] "subtype4" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
[13] "subtype2" "subtype3" "subtype2" "subtype5" "subtype4" "subtype4"
[19] "subtype4" "subtype5" "subtype3" "subtype1" "subtype1" "subtype4"
[25] "subtype3" "subtype5" "subtype5" "subtype1" "subtype4" "subtype3"
[31] "subtype1" "subtype5" "subtype4" "subtype1" "subtype5" "subtype1"
[37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
[43] "subtype3" "subtype4" "subtype5" "subtype5" "subtype5" "subtype3"
[49] "subtype2" "subtype5" "subtype5" "subtype4" "subtype3" "subtype1"
[55] "subtype3" "subtype4"
 [1] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [7] "subtype4" "subtype2" "subtype5" "subtype2" "subtype2" "subtype2"
[13] "subtype2" "subtype3" "subtype2" "subtype5" "subtype4" "subtype4"
[19] "subtype4" "subtype5" "subtype3" "subtype1" "subtype1" "subtype4"
[25] "subtype3" "subtype5" "subtype5" "subtype1" "subtype4" "subtype3"
[31] "subtype1" "subtype5" "subtype4" "subtype1" "subtype5" "subtype1"
[37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype5"
[43] "subtype3" "subtype4" "subtype5" "subtype5" "subtype5" "subtype3"
[49] "subtype2" "subtype5" "subtype5" "subtype4" "subtype3" "subtype1"
[55] "subtype3" "subtype4"
D2V2, continuous

Clustering(3) Variable = MRNASEQ_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1  4 11
  subtype2  9 10
  subtype3  5  7
  subtype4  4  6
subtype1 subtype2 subtype3 subtype4 
      15       19       12       10 
subtype1 subtype2 subtype3 subtype4 
      11       10        7        6 
$subtype1
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PN 
      102.41        52.31         4.67         0.26        12.43        26.70 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-NA-A4QW TCGA-NA-A4QX 
       15.48        18.81        67.17        35.80        74.37        27.39 
TCGA-ND-A4W6 TCGA-ND-A4WF TCGA-NG-A4VU 
       10.42         5.49        14.53 

$subtype2
TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE 
       47.31        24.00        17.42        19.63         3.68         9.57 
TCGA-N6-A4VF TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N9-A4PZ 
       17.16        13.38        26.63        27.25        25.68        21.93 
TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4R0 TCGA-ND-A4WC TCGA-NF-A5CP TCGA-NG-A4VW 
       19.86        15.81        17.79        15.16         5.49        31.20 
TCGA-QM-A5NM 
        5.42 

$subtype3
TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A59F TCGA-N6-A4VG TCGA-N8-A4PL TCGA-N8-A56S 
       18.08        29.95        11.87        39.75        13.74         9.70 
TCGA-N9-A4Q3 TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A4WX 
       54.97         3.75        85.35        23.47         9.80        14.86 

$subtype4
TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
        4.87        22.52        69.63        50.17        59.70        14.70 
TCGA-N7-A4Y0 TCGA-NA-A4QV TCGA-NA-A4R1 TCGA-NF-A4X2 
       25.35        93.40         6.67         2.66 

subtype1 subtype2 subtype3 subtype4 
    0.26     3.68     3.75     2.66 
subtype1 subtype2 subtype3 subtype4 
  102.41    47.31    85.35    93.40 
subtype1 subtype2 subtype3 subtype4 
  18.810   17.790   16.470   23.935 
[1] "0.3 - 102.4 (18.8)" "3.7 - 47.3 (17.8)"  "3.8 - 85.3 (16.5)" 
[4] "2.7 - 93.4 (23.9)" 
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
 [7] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[13] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[37] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
[43] "subtype2" "subtype4" "subtype3" "subtype1" "subtype3" "subtype2"
[49] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[55] "subtype2" "subtype2"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
 [7] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[13] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[37] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
[43] "subtype2" "subtype4" "subtype3" "subtype1" "subtype3" "subtype2"
[49] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[55] "subtype2" "subtype2"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
 [7] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[13] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[31] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[37] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
[43] "subtype2" "subtype4" "subtype3" "subtype1" "subtype3" "subtype2"
[49] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype1"
[55] "subtype2" "subtype2"
D3V2, continuous

Clustering(4) Variable = MRNASEQ_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1  4 11
  subtype2  5  6
  subtype3  9 12
  subtype4  4  5
subtype1 subtype2 subtype3 subtype4 
      15       11       21        9 
subtype1 subtype2 subtype3 subtype4 
      11        6       12        5 
$subtype1
TCGA-N5-A4R8 TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N7-A4Y5 TCGA-N7-A4Y8 
      102.41        52.31         4.67        22.52         0.26        12.43 
TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N9-A4Q1 TCGA-N9-A4Q4 TCGA-NA-A4QW TCGA-NA-A4QX 
       26.70        18.81        67.17        35.80        74.37        27.39 
TCGA-ND-A4W6 TCGA-ND-A4WF TCGA-NG-A4VU 
       10.42         5.49        14.53 

$subtype2
TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N6-A4VG TCGA-N8-A4PL TCGA-N8-A56S TCGA-N9-A4Q3 
       18.08        29.95        39.75        13.74         9.70        54.97 
TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A4WX 
        3.75        85.35        23.47         9.80        14.86 

$subtype3
TCGA-N5-A4RF TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE 
       47.31        11.87        17.42        19.63         3.68         9.57 
TCGA-N6-A4VF TCGA-N7-A59B TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP 
       17.16        13.38        26.63        27.25        25.68        15.48 
TCGA-N9-A4PZ TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4QV TCGA-NA-A4R0 TCGA-ND-A4WC 
       21.93        19.86        15.81        93.40        17.79        15.16 
TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.20         5.42 

$subtype4
TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
        4.87        24.00        69.63        50.17        59.70        14.70 
TCGA-N7-A4Y0 TCGA-NA-A4R1 TCGA-NF-A4X2 
       25.35         6.67         2.66 

subtype1 subtype2 subtype3 subtype4 
    0.26     3.75     3.68     2.66 
subtype1 subtype2 subtype3 subtype4 
  102.41    85.35    93.40    69.63 
subtype1 subtype2 subtype3 subtype4 
   22.52    18.08    17.42    24.00 
[1] "0.3 - 102.4 (22.5)" "3.8 - 85.3 (18.1)"  "3.7 - 93.4 (17.4)" 
[4] "2.7 - 69.6 (24.0)" 
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [7] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[13] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
[25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[43] "subtype3" "subtype4" "subtype2" "subtype1" "subtype2" "subtype3"
[49] "subtype1" "subtype2" "subtype2" "subtype4" "subtype3" "subtype1"
[55] "subtype3" "subtype3"
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [7] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[13] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
[25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[43] "subtype3" "subtype4" "subtype2" "subtype1" "subtype2" "subtype3"
[49] "subtype1" "subtype2" "subtype2" "subtype4" "subtype3" "subtype1"
[55] "subtype3" "subtype3"
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype4"
 [7] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[13] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype3"
[25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[43] "subtype3" "subtype4" "subtype2" "subtype1" "subtype2" "subtype3"
[49] "subtype1" "subtype2" "subtype2" "subtype4" "subtype3" "subtype1"
[55] "subtype3" "subtype3"
D4V2, continuous

Clustering(5) Variable = MIRSEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1  3  8
  subtype2 10 12
  subtype3  3  1
  subtype4  6 12
subtype1 subtype2 subtype3 subtype4 
      11       22        4       18 
subtype1 subtype2 subtype3 subtype4 
       8       12        1       12 
$subtype1
TCGA-N5-A4R8 TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N8-A4PP TCGA-N8-A4PQ 
      102.41         4.67        47.31        18.08        15.48        18.81 
TCGA-N9-A4Q4 TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4WF TCGA-NG-A4VU 
       35.80        27.39         6.67         5.49        14.53 

$subtype2
TCGA-N5-A4RA TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A4RV 
       52.31         4.87        24.00        22.52        50.17        59.70 
TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI TCGA-N8-A4PL 
       11.87        17.42         0.26        12.43        26.63        13.74 
TCGA-N8-A4PN TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A5I1 
       26.70        67.17        54.97        93.40        74.37        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A4WX 
       10.42        23.47         9.80        14.86 

$subtype3
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N6-A4VG TCGA-NF-A4X2 
       29.95        69.63        39.75         2.66 

$subtype4
TCGA-N5-A59E TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A59B 
       14.70        19.63         3.68         9.57        17.16        13.38 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q7 TCGA-N9-A4Q8 
       27.25        25.68         9.70        21.93        19.86        15.81 
TCGA-NA-A4QY TCGA-NA-A4R0 TCGA-ND-A4WC TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        3.75        17.79        15.16         5.49        31.20         5.42 

subtype1 subtype2 subtype3 subtype4 
    4.67     0.26     2.66     3.68 
subtype1 subtype2 subtype3 subtype4 
  102.41    93.40    69.63    31.20 
subtype1 subtype2 subtype3 subtype4 
  18.080   23.735   34.850   15.485 
[1] "4.7 - 102.4 (18.1)" "0.3 - 93.4 (23.7)"  "2.7 - 69.6 (34.9)" 
[4] "3.7 - 31.2 (15.5)" 
 [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[19] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[25] "subtype2" "subtype4" "subtype2" "subtype4" "subtype1" "subtype1"
[31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype1" "subtype4"
[37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype4"
[43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[49] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[55] "subtype4"
 [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[19] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[25] "subtype2" "subtype4" "subtype2" "subtype4" "subtype1" "subtype1"
[31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype1" "subtype4"
[37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype4"
[43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[49] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[55] "subtype4"
 [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[19] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[25] "subtype2" "subtype4" "subtype2" "subtype4" "subtype1" "subtype1"
[31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype1" "subtype4"
[37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype4"
[43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[49] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[55] "subtype4"
D5V2, continuous

Clustering(6) Variable = MIRSEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype2 11 15
  subtype3 11 17
subtype2 subtype3 
      26       28 
subtype2 subtype3 
      15       17 
$subtype2
TCGA-N5-A4R8 TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RT TCGA-N5-A59E 
      102.41         4.67        47.31        18.08        69.63        14.70 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A59B 
       19.63         3.68         9.57        17.16        39.75        13.38 
TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q4 
       27.25        15.48        18.81         9.70        21.93        35.80 
TCGA-N9-A4Q7 TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NF-A4X2 TCGA-NF-A5CP 
       19.86         6.67        15.16         5.49         2.66         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.20         5.42 

$subtype3
TCGA-N5-A4RA TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU 
       52.31         4.87        24.00        22.52        29.95        50.17 
TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI 
       59.70        11.87        17.42         0.26        12.43        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-N9-A4Q8 
       13.74        26.70        25.68        67.17        54.97        15.81 
TCGA-NA-A4QV TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R0 TCGA-NA-A5I1 TCGA-ND-A4W6 
       93.40        74.37        27.39        17.79        85.35        10.42 
TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A4WX TCGA-NG-A4VU 
       23.47         9.80        14.86        14.53 

subtype2 subtype3 
    2.66     0.26 
subtype2 subtype3 
  102.41    93.40 
subtype2 subtype3 
  16.320   23.735 
[1] "2.7 - 102.4 (16.3)" "0.3 - 93.4 (23.7)" 
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[31] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[31] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[25] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[31] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[1] "hr=" "1.2"
D6V2, continuous

Clustering(7) Variable = MIRSEQ_MATURE_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1  2  9
  subtype2 10 13
  subtype3  4  1
  subtype4  6 10
subtype1 subtype2 subtype3 subtype4 
      11       23        5       16 
subtype1 subtype2 subtype3 subtype4 
       9       13        1       10 
$subtype1
TCGA-N5-A4R8 TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A59E TCGA-N8-A4PP 
      102.41         4.67        47.31        18.08        14.70        15.48 
TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4WF TCGA-NG-A4VU 
       18.81        27.39         3.75         5.49        14.53 

$subtype2
TCGA-N5-A4RA TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU 
       52.31         4.87        24.00        22.52        29.95        50.17 
TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI 
       59.70        11.87        17.42         0.26        12.43        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-NA-A4QV TCGA-NA-A4QW 
       13.74        26.70        67.17        54.97        93.40        74.37 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A4WX 
       85.35        10.42        23.47         9.80        14.86 

$subtype3
TCGA-N5-A4RT TCGA-N6-A4VG TCGA-N9-A4Q4 TCGA-NA-A4R1 TCGA-NF-A4X2 
       69.63        39.75        35.80         6.67         2.66 

$subtype4
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N7-A59B TCGA-N8-A4PM 
       19.63         3.68         9.57        17.16        13.38        27.25 
TCGA-N8-A4PO TCGA-N8-A56S TCGA-N9-A4PZ TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4R0 
       25.68         9.70        21.93        19.86        15.81        17.79 
TCGA-ND-A4WC TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.20         5.42 

subtype1 subtype2 subtype3 subtype4 
    3.75     0.26     2.66     3.68 
subtype1 subtype2 subtype3 subtype4 
  102.41    93.40    69.63    31.20 
subtype1 subtype2 subtype3 subtype4 
  15.480   24.000   35.800   16.485 
[1] "3.8 - 102.4 (15.5)" "0.3 - 93.4 (24.0)"  "2.7 - 69.6 (35.8)" 
[4] "3.7 - 31.2 (16.5)" 
 [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[19] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[25] "subtype2" "subtype4" "subtype2" "subtype4" "subtype1" "subtype1"
[31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype4"
[37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[49] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[55] "subtype4"
 [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[19] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[25] "subtype2" "subtype4" "subtype2" "subtype4" "subtype1" "subtype1"
[31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype4"
[37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[49] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[55] "subtype4"
 [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[19] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype2"
[25] "subtype2" "subtype4" "subtype2" "subtype4" "subtype1" "subtype1"
[31] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype4"
[37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
[49] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[55] "subtype4"
D7V2, continuous

Clustering(8) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype2 10 15
  subtype3 12 17
subtype2 subtype3 
      25       29 
subtype2 subtype3 
      15       17 
$subtype2
TCGA-N5-A4RA TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU 
       52.31         4.87        24.00        22.52        29.95        50.17 
TCGA-N5-A4RV TCGA-N5-A59F TCGA-N6-A4V9 TCGA-N7-A4Y5 TCGA-N7-A4Y8 TCGA-N8-A4PI 
       59.70        11.87        17.42         0.26        12.43        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N9-A4Q1 TCGA-N9-A4Q3 TCGA-NA-A4QV TCGA-NA-A4QW 
       13.74        26.70        67.17        54.97        93.40        74.37 
TCGA-NA-A4QX TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NF-A4WU TCGA-NF-A4WX 
       27.39        85.35        10.42        23.47         9.80        14.86 
TCGA-NG-A4VU 
       14.53 

$subtype3
TCGA-N5-A4R8 TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RT TCGA-N5-A59E 
      102.41         4.67        47.31        18.08        69.63        14.70 
TCGA-N6-A4VC TCGA-N6-A4VD TCGA-N6-A4VE TCGA-N6-A4VF TCGA-N6-A4VG TCGA-N7-A59B 
       19.63         3.68         9.57        17.16        39.75        13.38 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-N9-A4PZ 
       27.25        25.68        15.48        18.81         9.70        21.93 
TCGA-N9-A4Q4 TCGA-N9-A4Q7 TCGA-N9-A4Q8 TCGA-NA-A4R0 TCGA-NA-A4R1 TCGA-ND-A4WC 
       35.80        19.86        15.81        17.79         6.67        15.16 
TCGA-ND-A4WF TCGA-NF-A4X2 TCGA-NF-A5CP TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49         2.66         5.49        31.20         5.42 

subtype2 subtype3 
    0.26     2.66 
subtype2 subtype3 
   93.40   102.41 
subtype2 subtype3 
   24.00    17.16 
[1] "0.3 - 93.4 (24.0)"  "2.7 - 102.4 (17.2)"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[1] "hr=" "1.3"
D8V2, continuous
> q(save="no")
