Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	17 (19%)	73	0.011102	1	0.0010013	0.329	0.0027506	0.875	8.8899e-05	0.0308	0.12924	1	0.27048	1	0.076459	1	0.17703	1
amp_4p16.3	41 (46%)	49	0.0028211	0.894	0.5441	1	0.013268	1	0.016506	1	0.48471	1	0.48882	1	0.55461	1	0.55563	1
amp_4q35.1	29 (32%)	61	4.6207e-05	0.0161	0.22993	1	0.00089768	0.297	0.010072	1	0.05792	1	0.18131	1	0.15473	1	0.32718	1
amp_5p15.33	65 (72%)	25	5.2134e-05	0.0181	0.86613	1	0.010513	1	0.070548	1	0.044463	1	0.81965	1	0.12157	1	0.59912	1
amp_5q35.3	63 (70%)	27	8.4875e-08	3.06e-05	0.0016967	0.55	2.199e-06	0.000781	1.2377e-05	0.00437	0.0062601	1	0.31133	1	0.024134	1	0.63085	1
amp_6p21.31	19 (21%)	71	0.11001	1	0.75315	1	0.080882	1	1	1	0.1308	1	0.22506	1	0.14675	1	0.17693	1
amp_6q24.3	19 (21%)	71	0.0068876	1	0.87342	1	0.047255	1	0.86974	1	0.64491	1	0.73692	1	0.8159	1	0.90261	1
amp_7p22.1	54 (60%)	36	0.0089449	1	0.46209	1	0.0080191	1	0.058924	1	0.53386	1	0.26998	1	0.4243	1	0.16934	1
amp_9q31.3	34 (38%)	56	0.00016983	0.0584	0.025341	1	0.029766	1	0.0031078	0.976	0.049889	1	0.1003	1	0.037939	1	0.1038	1
amp_12q14.1	70 (78%)	20	0.00014237	0.0491	0.25479	1	0.023993	1	0.079172	1	0.44699	1	0.55595	1	0.075222	1	0.52106	1
amp_14q11.2	27 (30%)	63	8.6682e-05	0.0301	0.017958	1	3.8043e-05	0.0134	5.9869e-07	0.000214	0.00029534	0.0995	0.0020886	0.67	0.00022584	0.0768	0.00075315	0.251
amp_16p13.3	50 (56%)	40	1.335e-07	4.78e-05	0.25793	1	0.0001947	0.0666	0.00058538	0.196	0.074424	1	0.55406	1	0.016123	1	0.84091	1
amp_16q22.1	56 (62%)	34	9.3098e-07	0.000331	0.38712	1	0.029451	1	0.0044987	1	0.063487	1	0.7862	1	0.036335	1	1	1
amp_16q24.2	49 (54%)	41	9.8611e-08	3.54e-05	0.029892	1	0.00027134	0.0917	3.9093e-05	0.0137	0.06474	1	0.24865	1	0.02918	1	0.53955	1
amp_17q25.3	18 (20%)	72	0.12376	1	0.65224	1	0.12618	1	0.50086	1	0.39822	1	0.65653	1	0.5402	1	0.37031	1
amp_19p13.12	58 (64%)	32	0.0031789	0.992	0.03079	1	0.0022648	0.725	0.0013174	0.431	0.3255	1	0.62579	1	0.24061	1	0.25632	1
amp_19q12	56 (62%)	34	0.0096222	1	0.019287	1	0.00195	0.63	0.0025686	0.819	0.17763	1	0.31122	1	0.12524	1	0.1136	1
amp_xp11.22	49 (54%)	41	0.00018879	0.0648	0.90226	1	0.034064	1	0.15667	1	0.71742	1	0.3446	1	0.85341	1	0.21675	1
amp_xq28	46 (51%)	44	0.00034531	0.116	0.74124	1	0.0092143	1	0.1261	1	0.48257	1	0.20423	1	0.67741	1	0.27287	1
del_1p36.23	37 (41%)	53	0.036089	1	0.015642	1	0.13621	1	0.02011	1	0.92426	1	0.38999	1	0.69311	1	0.41807	1
del_1q43	18 (20%)	72	0.10869	1	0.037827	1	0.58789	1	0.087502	1	0.49073	1	0.24811	1	0.65934	1	0.30728	1
del_2q22.1	18 (20%)	72	0.0020401	0.657	0.0044211	1	0.23739	1	0.15308	1	0.3194	1	0.17788	1	0.39276	1	0.28049	1
del_2q37.3	21 (23%)	69	0.0034275	1	0.031265	1	0.29182	1	0.19867	1	0.43298	1	0.46261	1	0.6203	1	0.63087	1
del_3q13.31	23 (26%)	67	0.018427	1	0.26381	1	0.01394	1	0.20205	1	0.27452	1	0.097847	1	0.075712	1	0.14766	1
del_4q34.3	25 (28%)	65	0.009858	1	0.044141	1	0.022669	1	0.029613	1	0.034907	1	0.16565	1	0.11789	1	0.10425	1
del_4q35.1	28 (31%)	62	0.046893	1	0.033139	1	0.097365	1	0.069661	1	0.34333	1	0.64348	1	0.53886	1	0.53166	1
del_6p24.3	20 (22%)	70	0.0063418	1	0.90041	1	0.59423	1	0.68687	1	1	1	0.73692	1	0.87672	1	0.90261	1
del_6q26	21 (23%)	69	0.033652	1	0.88062	1	0.32142	1	0.32204	1	0.49062	1	0.66231	1	0.41638	1	0.52412	1
del_7q32.3	9 (10%)	81	0.23224	1	0.030549	1	0.17578	1	0.069845	1	0.89549	1	0.44636	1	1	1	0.6028	1
del_9p23	24 (27%)	66	0.00095041	0.314	0.0054579	1	3.5438e-05	0.0125	0.0014644	0.477	0.006903	1	0.31187	1	0.0453	1	0.34722	1
del_9p21.3	27 (30%)	63	0.00065727	0.22	0.0031622	0.99	9.7103e-06	0.00344	0.00022044	0.0752	0.016887	1	0.20356	1	0.07662	1	0.213	1
del_10q23.1	11 (12%)	79	0.037879	1	0.19393	1	0.2372	1	1	1	1	1	0.51773	1	0.89096	1	0.52756	1
del_11p15.5	27 (30%)	63	0.0014976	0.487	0.018859	1	0.091749	1	0.13268	1	0.12294	1	0.1087	1	0.19878	1	0.15091	1
del_11q14.1	25 (28%)	65	0.00024071	0.0816	0.0059292	1	0.22345	1	0.34313	1	0.27743	1	0.37095	1	0.4194	1	0.58541	1
del_12q14.2	5 (6%)	85	0.18885	1	0.24567	1	0.1771	1	0.50521	1	0.59421	1	1	1	0.10277	1	1	1
del_13q14.2	42 (47%)	48	0.0030094	0.95	0.082284	1	0.33291	1	0.41613	1	1	1	1	1	0.90346	1	0.84091	1
del_14q21.2	20 (22%)	70	0.0072879	1	0.9141	1	0.3078	1	0.099161	1	0.36412	1	0.35692	1	0.20485	1	0.36298	1
del_16p13.3	7 (8%)	83	0.10137	1	0.46296	1	0.54354	1	1	1	0.024126	1	0.45081	1	0.044965	1	0.41134	1
del_16q23.1	9 (10%)	81	0.040819	1	0.50758	1	0.016961	1	0.16732	1	0.14101	1	0.85474	1	0.29901	1	0.85148	1
del_17q11.2	24 (27%)	66	0.0034283	1	0.0064416	1	0.10391	1	0.17477	1	0.23698	1	0.27868	1	0.23611	1	0.18276	1
del_17q21.31	26 (29%)	64	0.0030063	0.95	0.0083759	1	0.076674	1	0.083598	1	0.035014	1	0.074009	1	0.044678	1	0.036865	1
del_17q24.2	24 (27%)	66	0.00086737	0.288	0.01126	1	0.16249	1	0.048471	1	0.14793	1	0.20356	1	0.17206	1	0.11647	1
del_18q21.2	36 (40%)	54	0.075734	1	0.30783	1	0.81128	1	0.9418	1	0.47081	1	0.47187	1	0.73169	1	0.62983	1
del_20p12.1	12 (13%)	78	0.0011793	0.387	0.58845	1	0.042353	1	0.025655	1	0.0063279	1	0.54687	1	0.014252	1	0.55562	1
del_22q12.1	50 (56%)	40	0.039056	1	0.13382	1	0.73391	1	0.41667	1	0.62893	1	0.51049	1	0.47062	1	0.61401	1