Correlation between gene mutation status and molecular subtypes
Adrenocortical Carcinoma (Primary solid tumor)
16 April 2014 | analyses__2014_04_16
Maintainer Information
Citation Information
doi:10.7908/C1H130KT
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1H130KT
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 151 genes and 8 molecular subtypes across 91 patients, 2 significant findings detected with P value < 0.05 and Q value < 0.25.

- CTNNB1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

Results
Overview of the results

Table 1. Get Full Table Overview of the association between mutation status of 151 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 2 significant findings detected.

|  | Clinical Features | CN CNMF | METHLYATION CNMF | MRNASEQ CNMF | MRNASEQ CHIERARCHICAL | MIRSEQ CNMF | MIRSEQ CHIERARCHICAL | MIRSEQ MATURE CNMF | MIRSEQ MATURE CHIERARCHICAL
| nMutated (%) | nWild-Type | Chi-square test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test
CTNNB1 | 14 (15%) | 77 | 0.435 (1.00) | 0.0574 (1.00) | 0.000193 (0.223) | 3.12e-05 (0.0359) | 0.000643 (0.739) | 0.361 (1.00) | 0.00645 (1.00) | 0.251 (1.00)
CLIC6 | 11 (12%) | 80 | 0.933 (1.00) | 0.862 (1.00) | 0.285 (1.00) | 1 (1.00) | 0.311 (1.00) | 0.314 (1.00) | 0.342 (1.00) | 0.458 (1.00)
NMU | 10 (11%) | 81 | 0.151 (1.00) | 0.442 (1.00) | 0.137 (1.00) | 0.112 (1.00) | 0.15 (1.00) | 0.407 (1.00) | 0.299 (1.00) | 0.788 (1.00)
LPPR2 | 6 (7%) | 85 | 0.671 (1.00) | 0.559 (1.00) | 0.246 (1.00) | 0.198 (1.00) | 0.475 (1.00) | 0.711 (1.00) | 0.467 (1.00) | 0.336 (1.00)
CHDH | 6 (7%) | 85 | 0.138 (1.00) | 0.193 (1.00) | 0.888 (1.00) | 0.488 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
C4ORF32 | 9 (10%) | 82 | 0.874 (1.00) | 0.494 (1.00) | 0.165 (1.00) | 0.568 (1.00) | 0.563 (1.00) | 1 (1.00) | 0.118 (1.00) | 0.724 (1.00)
SYT8 | 14 (15%) | 77 | 0.897 (1.00) | 0.555 (1.00) | 0.677 (1.00) | 0.656 (1.00) | 1 (1.00) | 0.728 (1.00) | 0.837 (1.00) | 0.291 (1.00)
RINL | 19 (21%) | 72 | 0.0471 (1.00) | 0.567 (1.00) | 0.13 (1.00) | 0.128 (1.00) | 0.409 (1.00) | 0.737 (1.00) | 0.234 (1.00) | 1 (1.00)
OBSCN | 29 (32%) | 62 | 0.527 (1.00) | 0.494 (1.00) | 0.223 (1.00) | 0.802 (1.00) | 0.256 (1.00) | 0.762 (1.00) | 0.208 (1.00) | 0.599 (1.00)
MAP1S | 9 (10%) | 82 | 0.305 (1.00) | 0.254 (1.00) | 0.174 (1.00) | 1 (1.00) | 0.9 (1.00) | 0.878 (1.00) | 0.808 (1.00) | 0.788 (1.00)
GPRIN2 | 11 (12%) | 80 | 0.576 (1.00) | 0.746 (1.00) | 0.734 (1.00) | 0.181 (1.00) | 0.468 (1.00) | 0.275 (1.00) | 0.331 (1.00) | 0.376 (1.00)
ATP9B | 5 (5%) | 86 | 0.853 (1.00) | 0.292 (1.00) | 0.804 (1.00) | 0.861 (1.00) | 1 (1.00) | 1 (1.00) | 0.703 (1.00) | 1 (1.00)
RREB1 | 11 (12%) | 80 | 0.0932 (1.00) | 0.606 (1.00) | 0.547 (1.00) | 0.352 (1.00) | 1 (1.00) | 0.444 (1.00) | 0.89 (1.00) | 0.601 (1.00)
IDUA | 15 (16%) | 76 | 0.25 (1.00) | 0.517 (1.00) | 0.489 (1.00) | 0.672 (1.00) | 0.15 (1.00) | 1 (1.00) | 0.253 (1.00) | 1 (1.00)
RGS9BP | 11 (12%) | 80 | 0.351 (1.00) | 0.715 (1.00) | 1 (1.00) | 0.821 (1.00) | 0.451 (1.00) | 0.79 (1.00) | 0.685 (1.00) | 0.799 (1.00)
WDR34 | 11 (12%) | 80 | 0.753 (1.00) | 0.823 (1.00) | 0.965 (1.00) | 0.634 (1.00) | 0.617 (1.00) | 0.239 (1.00) | 0.906 (1.00) | 0.178 (1.00)
NOTCH2 | 12 (13%) | 79 | 0.333 (1.00) | 0.573 (1.00) | 1 (1.00) | 0.644 (1.00) | 0.11 (1.00) | 0.877 (1.00) | 0.181 (1.00) | 0.458 (1.00)
TMEM189 | 12 (13%) | 79 | 0.188 (1.00) | 0.854 (1.00) | 0.319 (1.00) | 0.0878 (1.00) | 0.306 (1.00) | 0.692 (1.00) | 0.376 (1.00) | 0.554 (1.00)
TAF5 | 12 (13%) | 79 | 0.408 (1.00) | 0.666 (1.00) | 1 (1.00) | 0.499 (1.00) | 0.393 (1.00) | 0.0703 (1.00) | 0.187 (1.00) | 0.11 (1.00)
LRP11 | 9 (10%) | 82 | 0.00701 (1.00) | 0.373 (1.00) | 1 (1.00) | 0.549 (1.00) | 0.594 (1.00) | 0.64 (1.00) | 0.679 (1.00) | 1 (1.00)
FPGS | 14 (15%) | 77 | 0.262 (1.00) | 0.515 (1.00) | 0.0636 (1.00) | 1 (1.00) | 0.64 (1.00) | 1 (1.00) | 0.363 (1.00) | 1 (1.00)
BAG1 | 6 (7%) | 85 | 0.956 (1.00) | 0.359 (1.00) | 0.626 (1.00) | 0.728 (1.00) | 0.346 (1.00) | 0.0804 (1.00) | 0.186 (1.00) | 0.163 (1.00)
FZD1 | 6 (7%) | 85 | 0.424 (1.00) | 0.333 (1.00) | 0.612 (1.00) | 0.113 (1.00) | 0.3 (1.00) | 0.526 (1.00) | 0.315 (1.00) | 0.384 (1.00)
TOR3A | 25 (27%) | 66 | 0.674 (1.00) | 0.0628 (1.00) | 0.447 (1.00) | 0.0295 (1.00) | 0.887 (1.00) | 0.221 (1.00) | 0.925 (1.00) | 0.447 (1.00)
TMEM200C | 6 (7%) | 85 | 0.652 (1.00) | 0.333 (1.00) | 0.0137 (1.00) | 0.358 (1.00) | 1 (1.00) | 1 (1.00) | 0.597 (1.00) | 1 (1.00)
ZNF517 | 33 (36%) | 58 | 0.59 (1.00) | 0.962 (1.00) | 0.688 (1.00) | 0.857 (1.00) | 0.519 (1.00) | 1 (1.00) | 0.66 (1.00) | 1 (1.00)
DMRT1 | 5 (5%) | 86 | 0.635 (1.00) | 0.24 (1.00) | 0.21 (1.00) | 0.0922 (1.00) | 0.0209 (1.00) | 0.00222 (1.00) | 0.0623 (1.00) | 0.00318 (1.00)
GLTPD2 | 19 (21%) | 72 | 0.339 (1.00) | 0.962 (1.00) | 0.955 (1.00) | 0.683 (1.00) | 0.477 (1.00) | 0.515 (1.00) | 0.721 (1.00) | 0.849 (1.00)
SEMA5B | 16 (18%) | 75 | 0.191 (1.00) | 0.637 (1.00) | 0.114 (1.00) | 0.314 (1.00) | 0.78 (1.00) | 0.826 (1.00) | 1 (1.00) | 0.83 (1.00)
TNIP2 | 7 (8%) | 84 | 0.589 (1.00) | 0.293 (1.00) | 0.708 (1.00) | 0.597 (1.00) | 0.846 (1.00) | 0.303 (1.00) | 1 (1.00) | 0.213 (1.00)
HHIPL1 | 14 (15%) | 77 | 0.134 (1.00) | 0.961 (1.00) | 0.314 (1.00) | 0.845 (1.00) | 0.0149 (1.00) | 0.0376 (1.00) | 0.0212 (1.00) | 0.124 (1.00)
HECTD2 | 7 (8%) | 84 | 0.746 (1.00) | 0.388 (1.00) | 0.392 (1.00) | 0.415 (1.00) | 0.563 (1.00) | 1 (1.00) | 0.752 (1.00) | 1 (1.00)
ADAD2 | 15 (16%) | 76 | 0.138 (1.00) | 0.141 (1.00) | 0.889 (1.00) | 0.25 (1.00) | 0.578 (1.00) | 0.567 (1.00) | 0.628 (1.00) | 0.638 (1.00)
ZFPM1 | 48 (53%) | 43 | 0.225 (1.00) | 0.903 (1.00) | 0.916 (1.00) | 0.838 (1.00) | 0.829 (1.00) | 0.225 (1.00) | 0.548 (1.00) | 0.413 (1.00)
CLDN23 | 13 (14%) | 78 | 0.207 (1.00) | 0.361 (1.00) | 0.0204 (1.00) | 0.15 (1.00) | 0.137 (1.00) | 0.303 (1.00) | 0.147 (1.00) | 0.509 (1.00)
CCDC105 | 11 (12%) | 80 | 0.0641 (1.00) | 0.00159 (1.00) | 0.882 (1.00) | 0.121 (1.00) | 0.363 (1.00) | 0.0204 (1.00) | 0.279 (1.00) | 0.0166 (1.00)
DMKN | 3 (3%) | 88 | 0.688 (1.00) | 0.333 (1.00) | 0.612 (1.00) | 0.113 (1.00) | 0.00708 (1.00) | 1 (1.00) | 0.0103 (1.00) | 1 (1.00)
NOL9 | 12 (13%) | 79 | 0.469 (1.00) | 0.647 (1.00) | 0.295 (1.00) | 0.225 (1.00) | 0.812 (1.00) | 0.692 (1.00) | 0.903 (1.00) | 0.554 (1.00)
C19ORF10 | 10 (11%) | 81 | 0.638 (1.00) | 0.16 (1.00) | 0.124 (1.00) | 0.00708 (1.00) | 0.237 (1.00) | 0.757 (1.00) | 0.105 (1.00) | 0.764 (1.00)
ZNF598 | 19 (21%) | 72 | 0.427 (1.00) | 0.414 (1.00) | 0.777 (1.00) | 0.93 (1.00) | 0.787 (1.00) | 0.836 (1.00) | 0.68 (1.00) | 0.638 (1.00)
THEM4 | 14 (15%) | 77 | 0.00763 (1.00) | 0.251 (1.00) | 0.97 (1.00) | 0.917 (1.00) | 0.484 (1.00) | 0.141 (1.00) | 0.762 (1.00) | 0.0872 (1.00)
LRIG1 | 32 (35%) | 59 | 0.533 (1.00) | 0.731 (1.00) | 0.656 (1.00) | 0.707 (1.00) | 0.296 (1.00) | 0.818 (1.00) | 0.902 (1.00) | 0.631 (1.00)
MUC5B | 25 (27%) | 66 | 0.759 (1.00) | 0.248 (1.00) | 0.337 (1.00) | 0.291 (1.00) | 0.655 (1.00) | 0.927 (1.00) | 0.485 (1.00) | 0.873 (1.00)
CTGF | 6 (7%) | 85 | 0.632 (1.00) | 0.397 (1.00) | 0.754 (1.00) | 0.728 (1.00) | 0.277 (1.00) | 0.199 (1.00) | 0.423 (1.00) | 0.163 (1.00)
AMDHD1 | 18 (20%) | 73 | 0.0677 (1.00) | 0.896 (1.00) | 0.563 (1.00) | 0.652 (1.00) | 0.273 (1.00) | 0.294 (1.00) | 0.0186 (1.00) | 0.394 (1.00)
RNF149 | 7 (8%) | 84 | 0.768 (1.00) | 0.56 (1.00) | 0.888 (1.00) | 0.762 (1.00) | 0.0871 (1.00) | 0.123 (1.00) | 0.146 (1.00) | 0.141 (1.00)
MSH3 | 5 (5%) | 86 | 0.00899 (1.00) | 0.592 (1.00) | 0.0701 (1.00) | 0.684 (1.00) | 0.132 (1.00) | 0.342 (1.00) | 0.182 (1.00) | 0.192 (1.00)
ALPPL2 | 8 (9%) | 83 | 0.907 (1.00) | 0.121 (1.00) | 0.339 (1.00) | 0.365 (1.00) | 0.703 (1.00) | 0.258 (1.00) | 0.8 (1.00) | 0.281 (1.00)
SNED1 | 7 (8%) | 84 | 0.671 (1.00) | 0.623 (1.00) | 0.547 (1.00) | 0.711 (1.00) | 0.0417 (1.00) | 0.862 (1.00) | 0.0706 (1.00) | 0.865 (1.00)
NOXA1 | 5 (5%) | 86 | 0.284 (1.00) | 0.371 (1.00) | 0.347 (1.00) | 0.258 (1.00) | 0.3 (1.00) | 0.526 (1.00) | 0.315 (1.00) | 0.384 (1.00)
OPRD1 | 26 (29%) | 65 | 0.24 (1.00) | 0.832 (1.00) | 0.646 (1.00) | 0.759 (1.00) | 0.465 (1.00) | 0.466 (1.00) | 0.695 (1.00) | 0.629 (1.00)
CCDC102A | 26 (29%) | 65 | 0.587 (1.00) | 0.864 (1.00) | 0.908 (1.00) | 0.82 (1.00) | 0.544 (1.00) | 0.586 (1.00) | 0.677 (1.00) | 0.385 (1.00)
KCTD3 | 8 (9%) | 83 | 0.11 (1.00) | 0.0699 (1.00) | 0.686 (1.00) | 0.488 (1.00) | 1 (1.00) | 0.711 (1.00) | 1 (1.00) | 0.612 (1.00)
C1ORF106 | 16 (18%) | 75 | 0.9 (1.00) | 0.439 (1.00) | 0.518 (1.00) | 0.816 (1.00) | 1 (1.00) | 0.537 (1.00) | 0.749 (1.00) | 0.634 (1.00)
KCNK17 | 19 (21%) | 72 | 0.135 (1.00) | 0.0959 (1.00) | 0.201 (1.00) | 0.0117 (1.00) | 1 (1.00) | 0.278 (1.00) | 0.881 (1.00) | 0.497 (1.00)
LACTB | 27 (30%) | 64 | 0.0645 (1.00) | 0.343 (1.00) | 0.906 (1.00) | 1 (1.00) | 0.571 (1.00) | 0.708 (1.00) | 0.485 (1.00) | 0.858 (1.00)
TRIOBP | 24 (26%) | 67 | 0.713 (1.00) | 0.709 (1.00) | 0.775 (1.00) | 0.406 (1.00) | 1 (1.00) | 0.794 (1.00) | 0.94 (1.00) | 1 (1.00)
SARM1 | 14 (15%) | 77 | 0.0196 (1.00) | 0.471 (1.00) | 0.836 (1.00) | 0.908 (1.00) | 0.468 (1.00) | 0.615 (1.00) | 0.331 (1.00) | 0.0591 (1.00)
ERCC2 | 19 (21%) | 72 | 0.0188 (1.00) | 0.229 (1.00) | 0.107 (1.00) | 0.00307 (1.00) | 0.166 (1.00) | 0.0678 (1.00) | 0.077 (1.00) | 0.0388 (1.00)
NEFH | 10 (11%) | 81 | 0.167 (1.00) | 0.382 (1.00) | 0.234 (1.00) | 1 (1.00) | 0.491 (1.00) | 0.661 (1.00) | 0.625 (1.00) | 0.764 (1.00)
KBTBD13 | 15 (16%) | 76 | 0.344 (1.00) | 0.467 (1.00) | 0.765 (1.00) | 0.101 (1.00) | 0.731 (1.00) | 0.737 (1.00) | 0.493 (1.00) | 0.859 (1.00)
IRX3 | 21 (23%) | 70 | 0.315 (1.00) | 0.538 (1.00) | 0.241 (1.00) | 0.456 (1.00) | 0.307 (1.00) | 0.766 (1.00) | 0.141 (1.00) | 1 (1.00)
MUC2 | 18 (20%) | 73 | 0.829 (1.00) | 0.0845 (1.00) | 0.098 (1.00) | 0.0889 (1.00) | 0.179 (1.00) | 0.0271 (1.00) | 0.114 (1.00) | 0.0432 (1.00)
GARS | 35 (38%) | 56 | 0.284 (1.00) | 0.562 (1.00) | 0.548 (1.00) | 0.154 (1.00) | 0.173 (1.00) | 0.0436 (1.00) | 0.123 (1.00) | 0.0908 (1.00)
UQCRFS1 | 12 (13%) | 79 | 0.885 (1.00) | 0.429 (1.00) | 0.822 (1.00) | 0.544 (1.00) | 0.36 (1.00) | 0.0717 (1.00) | 0.328 (1.00) | 0.0653 (1.00)
ATXN1 | 14 (15%) | 77 | 0.661 (1.00) | 0.178 (1.00) | 0.677 (1.00) | 0.845 (1.00) | 0.833 (1.00) | 0.899 (1.00) | 0.917 (1.00) | 0.904 (1.00)
ZNF628 | 10 (11%) | 81 | 0.0739 (1.00) | 0.368 (1.00) | 0.0703 (1.00) | 0.059 (1.00) | 0.0417 (1.00) | 0.446 (1.00) | 0.0433 (1.00) | 0.406 (1.00)
DSPP | 13 (14%) | 78 | 0.694 (1.00) | 0.175 (1.00) | 0.867 (1.00) | 0.917 (1.00) | 0.833 (1.00) | 0.586 (1.00) | 0.448 (1.00) | 0.492 (1.00)
ASPDH | 19 (21%) | 72 | 0.289 (1.00) | 0.674 (1.00) | 0.0774 (1.00) | 0.0874 (1.00) | 0.174 (1.00) | 0.00171 (1.00) | 0.0539 (1.00) | 0.00136 (1.00)
CSGALNACT2 | 5 (5%) | 86 | 0.312 (1.00) | 0.0371 (1.00) | 0.626 (1.00) | 0.264 (1.00) | 0.125 (1.00) | 0.248 (1.00) | 0.186 (1.00) | 0.325 (1.00)
TPO | 21 (23%) | 70 | 0.297 (1.00) | 0.102 (1.00) | 0.25 (1.00) | 0.249 (1.00) | 0.276 (1.00) | 1 (1.00) | 0.172 (1.00) | 0.705 (1.00)
KRTAP4-5 | 7 (8%) | 84 | 0.262 (1.00) | 0.115 (1.00) | 0.722 (1.00) | 0.88 (1.00) | 0.855 (1.00) | 0.306 (1.00) | 0.547 (1.00) | 0.336 (1.00)
GLTSCR2 | 8 (9%) | 83 | 0.504 (1.00) | 0.173 (1.00) | 0.217 (1.00) | 0.711 (1.00) | 0.297 (1.00) | 0.216 (1.00) | 0.0706 (1.00) | 0.342 (1.00)
PANK2 | 15 (16%) | 76 | 0.725 (1.00) | 0.802 (1.00) | 0.779 (1.00) | 0.724 (1.00) | 1 (1.00) | 0.748 (1.00) | 1 (1.00) | 0.509 (1.00)
RNF39 | 7 (8%) | 84 | 0.416 (1.00) | 0.139 (1.00) | 0.0334 (1.00) | 0.00798 (1.00) | 0.0544 (1.00) | 0.64 (1.00) | 0.145 (1.00) | 0.645 (1.00)
MAL2 | 23 (25%) | 68 | 0.275 (1.00) | 0.782 (1.00) | 0.0202 (1.00) | 1 (1.00) | 0.425 (1.00) | 0.687 (1.00) | 0.782 (1.00) | 0.849 (1.00)
ZAR1 | 19 (21%) | 72 | 0.252 (1.00) | 0.634 (1.00) | 0.543 (1.00) | 0.602 (1.00) | 0.281 (1.00) | 1 (1.00) | 0.542 (1.00) | 0.849 (1.00)
C16ORF3 | 8 (9%) | 83 | 0.734 (1.00) | 0.00275 (1.00) | 0.43 (1.00) | 1 (1.00) | 0.656 (1.00) | 1 (1.00) | 0.645 (1.00) | 1 (1.00)
KRTAP5-5 | 7 (8%) | 84 | 0.505 (1.00) | 0.564 (1.00) | 0.515 (1.00) | 1 (1.00) | 0.591 (1.00) | 0.537 (1.00) | 0.703 (1.00) | 0.834 (1.00)
CRIPAK | 17 (19%) | 74 | 0.378 (1.00) | 0.566 (1.00) | 0.163 (1.00) | 0.815 (1.00) | 0.87 (1.00) | 1 (1.00) | 0.705 (1.00) | 1 (1.00)
C14ORF180 | 4 (4%) | 87 | 0.626 (1.00) | 0.0794 (1.00) | 0.537 (1.00) | 0.621 (1.00) | 0.3 (1.00) | 0.526 (1.00) | 0.315 (1.00) | 0.249 (1.00)
SPERT | 5 (5%) | 86 | 0.463 (1.00) | 0.592 (1.00) | 0.0316 (1.00) | 0.128 (1.00) | 0.132 (1.00) | 0.342 (1.00) | 0.182 (1.00) | 0.192 (1.00)
TP53 | 17 (19%) | 74 | 0.0173 (1.00) | 0.519 (1.00) | 0.00344 (1.00) | 0.115 (1.00) | 0.00268 (1.00) | 0.07 (1.00) | 0.00936 (1.00) | 0.0373 (1.00)
B3GNT6 | 4 (4%) | 87 | 0.32 (1.00) |  |  |  |  |  |  |
BHLHE22 | 10 (11%) | 81 | 0.0312 (1.00) | 0.27 (1.00) | 0.00963 (1.00) | 0.3 (1.00) | 0.684 (1.00) | 0.89 (1.00) | 0.831 (1.00) | 1 (1.00)
RGMB | 10 (11%) | 81 | 0.186 (1.00) | 0.831 (1.00) | 0.935 (1.00) | 0.363 (1.00) | 0.563 (1.00) | 1 (1.00) | 0.752 (1.00) | 1 (1.00)
APOE | 8 (9%) | 83 | 0.0848 (1.00) | 0.342 (1.00) | 0.124 (1.00) | 0.471 (1.00) | 0.297 (1.00) | 0.446 (1.00) | 0.0706 (1.00) | 0.406 (1.00)
PCGF6 | 4 (4%) | 87 | 0.497 (1.00) |  |  |  |  |  |  |
MEN1 | 8 (9%) | 83 | 0.384 (1.00) | 0.0105 (1.00) | 0.165 (1.00) | 0.014 (1.00) | 0.491 (1.00) | 0.375 (1.00) | 0.625 (1.00) | 0.332 (1.00)
LZTR1 | 7 (8%) | 84 | 0.241 (1.00) | 0.305 (1.00) | 0.055 (1.00) | 0.44 (1.00) | 0.213 (1.00) | 0.152 (1.00) | 0.358 (1.00) | 0.553 (1.00)
RASIP1 | 11 (12%) | 80 | 0.337 (1.00) | 0.735 (1.00) | 0.0442 (1.00) | 0.155 (1.00) | 0.0118 (1.00) | 0.211 (1.00) | 0.00128 (1.00) | 0.199 (1.00)
ZC3H12D | 6 (7%) | 85 | 0.0274 (1.00) | 0.864 (1.00) | 0.804 (1.00) | 0.32 (1.00) | 0.422 (1.00) | 0.303 (1.00) | 0.499 (1.00) | 0.063 (1.00)
TSC22D2 | 11 (12%) | 80 | 0.372 (1.00) | 0.275 (1.00) | 0.936 (1.00) | 0.694 (1.00) | 1 (1.00) | 0.514 (1.00) | 1 (1.00) | 0.465 (1.00)
COQ2 | 7 (8%) | 84 | 0.081 (1.00) | 0.691 (1.00) | 0.528 (1.00) | 0.488 (1.00) | 0.563 (1.00) | 0.711 (1.00) | 0.752 (1.00) | 0.724 (1.00)
DLEU7 | 6 (7%) | 85 | 0.218 (1.00) | 0.788 (1.00) | 0.536 (1.00) | 0.21 (1.00) | 0.409 (1.00) | 1 (1.00) | 0.444 (1.00) | 1 (1.00)
FAM46A | 4 (4%) | 87 | 0.709 (1.00) | 0.874 (1.00) | 0.877 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
JMJD4 | 6 (7%) | 85 | 0.634 (1.00) | 0.177 (1.00) | 0.331 (1.00) | 0.44 (1.00) | 0.846 (1.00) | 0.822 (1.00) | 1 (1.00) | 0.834 (1.00)
DOK7 | 7 (8%) | 84 | 0.609 (1.00) | 0.373 (1.00) | 1 (1.00) | 1 (1.00) | 0.882 (1.00) | 0.0198 (1.00) | 0.771 (1.00) | 0.02 (1.00)
KNDC1 | 16 (18%) | 75 | 0.775 (1.00) | 0.0847 (1.00) | 0.554 (1.00) | 0.601 (1.00) | 0.593 (1.00) | 0.588 (1.00) | 0.588 (1.00) | 0.724 (1.00)
SIX6 | 3 (3%) | 88 | 0.00409 (1.00) | 0.0715 (1.00) | 0.00478 (1.00) | 0.0202 (1.00) | 0.3 (1.00) | 0.526 (1.00) | 0.315 (1.00) | 0.384 (1.00)
PDCD6 | 5 (5%) | 86 | 0.0684 (1.00) | 0.482 (1.00) | 0.348 (1.00) | 0.379 (1.00) | 0.422 (1.00) | 0.822 (1.00) | 0.499 (1.00) | 0.553 (1.00)
HNRNPCL1 | 4 (4%) | 87 | 0.292 (1.00) |  |  |  |  |  |  |
ATP6V0E2 | 4 (4%) | 87 | 0.724 (1.00) | 0.725 (1.00) | 0.638 (1.00) | 0.467 (1.00) | 0.0883 (1.00) | 0.435 (1.00) | 0.133 (1.00) | 0.455 (1.00)
HES3 | 7 (8%) | 84 | 0.505 (1.00) | 0.794 (1.00) | 0.515 (1.00) | 0.44 (1.00) | 0.166 (1.00) | 1 (1.00) | 0.299 (1.00) | 1 (1.00)
AATK | 9 (10%) | 82 | 0.518 (1.00) | 0.32 (1.00) | 0.725 (1.00) | 0.279 (1.00) | 1 (1.00) | 0.862 (1.00) | 1 (1.00) | 0.747 (1.00)
FANK1 | 4 (4%) | 87 | 0.863 (1.00) | 0.496 (1.00) | 0.877 (1.00) | 0.781 (1.00) | 0.781 (1.00) | 0.229 (1.00) | 0.796 (1.00) | 0.249 (1.00)
FEZ2 | 5 (5%) | 86 | 0.809 (1.00) | 0.982 (1.00) | 0.485 (1.00) | 0.506 (1.00) | 0.277 (1.00) | 0.537 (1.00) | 0.423 (1.00) | 0.163 (1.00)
HSD17B1 | 5 (5%) | 86 | 0.809 (1.00) | 0.246 (1.00) | 1 (1.00) | 0.176 (1.00) | 0.591 (1.00) | 1 (1.00) | 0.703 (1.00) | 0.432 (1.00)
PRKAR1A | 7 (8%) | 84 | 0.609 (1.00) | 0.794 (1.00) | 0.0594 (1.00) | 0.471 (1.00) | 0.523 (1.00) | 0.64 (1.00) | 0.219 (1.00) | 0.645 (1.00)
ATOH8 | 4 (4%) | 87 | 0.626 (1.00) | 0.7 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 0.229 (1.00) | 1 (1.00) | 0.249 (1.00)
BTBD11 | 9 (10%) | 82 | 0.498 (1.00) | 0.872 (1.00) | 0.267 (1.00) | 0.278 (1.00) | 0.703 (1.00) | 0.877 (1.00) | 0.8 (1.00) | 0.875 (1.00)
KANK3 | 6 (7%) | 85 | 0.0378 (1.00) | 0.532 (1.00) | 0.048 (1.00) | 0.0108 (1.00) | 0.0573 (1.00) | 1 (1.00) | 0.101 (1.00) | 1 (1.00)
PAQR4 | 3 (3%) | 88 | 0.872 (1.00) | 0.874 (1.00) | 0.877 (1.00) | 1 (1.00) | 0.781 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
NOM1 | 7 (8%) | 84 | 0.768 (1.00) | 0.691 (1.00) | 0.615 (1.00) | 0.88 (1.00) | 0.855 (1.00) | 1 (1.00) | 0.547 (1.00) | 1 (1.00)
PLIN5 | 6 (7%) | 85 | 0.152 (1.00) | 0.505 (1.00) | 0.888 (1.00) | 0.488 (1.00) | 0.326 (1.00) | 0.0402 (1.00) | 0.146 (1.00) | 0.0391 (1.00)
CD320 | 5 (5%) | 86 | 0.72 (1.00) | 0.564 (1.00) | 0.708 (1.00) | 1 (1.00) | 0.213 (1.00) | 0.152 (1.00) | 0.0756 (1.00) | 0.128 (1.00)
AVL9 | 6 (7%) | 85 | 0.25 (1.00) | 0.381 (1.00) | 0.908 (1.00) | 0.813 (1.00) | 1 (1.00) | 0.591 (1.00) | 1 (1.00) | 0.617 (1.00)
ASB16 | 10 (11%) | 81 | 0.808 (1.00) | 0.947 (1.00) | 0.555 (1.00) | 0.88 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
SCRT1 | 6 (7%) | 85 | 0.616 (1.00) | 0.345 (1.00) | 0.761 (1.00) | 1 (1.00) | 0.563 (1.00) | 0.711 (1.00) | 0.752 (1.00) | 0.724 (1.00)
FOXQ1 | 4 (4%) | 87 | 0.0765 (1.00) | 0.0866 (1.00) | 1 (1.00) | 0.781 (1.00) | 0.586 (1.00) | 0.703 (1.00) | 0.796 (1.00) | 0.72 (1.00)
NPTX1 | 6 (7%) | 85 | 0.101 (1.00) | 0.494 (1.00) | 0.615 (1.00) | 0.313 (1.00) | 0.398 (1.00) | 0.306 (1.00) | 0.399 (1.00) | 0.0522 (1.00)
ZNF285 | 3 (3%) | 88 | 0.526 (1.00) |  |  |  |  |  |  |
PTPLA | 6 (7%) | 85 | 0.243 (1.00) | 0.359 (1.00) | 0.708 (1.00) | 0.597 (1.00) | 1 (1.00) | 1 (1.00) | 0.703 (1.00) | 1 (1.00)
PRSS27 | 4 (4%) | 87 | 0.439 (1.00) | 0.592 (1.00) | 0.261 (1.00) | 0.128 (1.00) | 0.185 (1.00) | 1 (1.00) | 0.254 (1.00) | 1 (1.00)
LRRN4 | 4 (4%) | 87 | 0.838 (1.00) | 0.51 (1.00) | 0.76 (1.00) | 1 (1.00) | 0.409 (1.00) | 0.342 (1.00) | 0.444 (1.00) | 1 (1.00)
EP400 | 4 (4%) | 87 | 0.872 (1.00) | 0.725 (1.00) | 0.448 (1.00) | 0.684 (1.00) | 1 (1.00) | 0.786 (1.00) | 1 (1.00) | 1 (1.00)
LTK | 4 (4%) | 87 | 0.863 (1.00) |  |  |  |  |  |  |
CCDC96 | 4 (4%) | 87 | 0.103 (1.00) | 0.592 (1.00) | 1 (1.00) | 0.684 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
PCMTD1 | 4 (4%) | 87 | 0.257 (1.00) | 0.21 (1.00) | 0.348 (1.00) | 0.379 (1.00) | 1 (1.00) | 0.786 (1.00) | 1 (1.00) | 1 (1.00)
GLI3 | 8 (9%) | 83 | 0.731 (1.00) | 0.217 (1.00) | 0.643 (1.00) | 0.146 (1.00) | 0.346 (1.00) | 0.64 (1.00) | 0.589 (1.00) | 1 (1.00)
MN1 | 9 (10%) | 82 | 0.767 (1.00) | 0.264 (1.00) | 0.882 (1.00) | 0.898 (1.00) | 0.393 (1.00) | 0.258 (1.00) | 0.267 (1.00) | 0.281 (1.00)
C9ORF66 | 7 (8%) | 84 | 0.51 (1.00) | 0.947 (1.00) | 0.761 (1.00) | 0.488 (1.00) | 0.563 (1.00) | 1 (1.00) | 0.752 (1.00) | 0.724 (1.00)
MADCAM1 | 5 (5%) | 86 | 0.0541 (1.00) | 0.864 (1.00) | 0.348 (1.00) | 0.379 (1.00) | 0.422 (1.00) | 0.303 (1.00) | 0.499 (1.00) | 0.213 (1.00)
BMP8A | 3 (3%) | 88 | 0.387 (1.00) | 0.661 (1.00) | 1 (1.00) | 0.781 (1.00) | 1 (1.00) | 1 (1.00) | 0.597 (1.00) | 0.538 (1.00)
ODF3L2 | 3 (3%) | 88 | 0.872 (1.00) | 0.661 (1.00) | 0.775 (1.00) | 0.781 (1.00) | 0.781 (1.00) | 0.703 (1.00) | 0.796 (1.00) | 0.72 (1.00)
QRICH2 | 4 (4%) | 87 | 0.724 (1.00) | 0.635 (1.00) | 0.288 (1.00) | 0.561 (1.00) | 0.816 (1.00) | 0.591 (1.00) | 0.677 (1.00) | 0.617 (1.00)
KRTAP10-7 | 5 (5%) | 86 | 0.694 (1.00) | 0.359 (1.00) | 0.804 (1.00) | 0.861 (1.00) | 0.0163 (1.00) | 0.199 (1.00) | 0.0264 (1.00) | 0.267 (1.00)
IDI1 | 5 (5%) | 86 | 0.573 (1.00) | 0.564 (1.00) | 0.667 (1.00) | 0.861 (1.00) | 1 (1.00) | 0.407 (1.00) | 0.845 (1.00) | 0.432 (1.00)
IER5 | 3 (3%) | 88 | 0.237 (1.00) |  |  |  |  |  |  |
PRR21 | 6 (7%) | 85 | 0.585 (1.00) | 0.684 (1.00) | 0.754 (1.00) | 0.728 (1.00) | 1 (1.00) | 0.537 (1.00) | 0.845 (1.00) | 0.834 (1.00)
ARRDC4 | 7 (8%) | 84 | 0.465 (1.00) | 0.334 (1.00) | 0.329 (1.00) | 0.165 (1.00) | 0.563 (1.00) | 0.711 (1.00) | 0.752 (1.00) | 0.612 (1.00)
RNF135 | 4 (4%) | 87 | 0.709 (1.00) | 0.344 (1.00) | 0.296 (1.00) | 0.621 (1.00) | 0.781 (1.00) | 0.703 (1.00) | 0.796 (1.00) | 0.72 (1.00)
DAXX | 4 (4%) | 87 | 0.0325 (1.00) | 0.21 (1.00) | 0.261 (1.00) | 0.0362 (1.00) | 0.409 (1.00) | 1 (1.00) | 0.444 (1.00) | 1 (1.00)
VARS | 8 (9%) | 83 | 0.749 (1.00) | 0.931 (1.00) | 0.227 (1.00) | 0.278 (1.00) | 0.311 (1.00) | 1 (1.00) | 0.158 (1.00) | 0.68 (1.00)
GPR20 | 4 (4%) | 87 | 0.626 (1.00) | 0.7 (1.00) | 0.249 (1.00) | 1 (1.00) | 0.434 (1.00) | 1 (1.00) | 0.597 (1.00) | 1 (1.00)
SAMD11 | 3 (3%) | 88 | 0.433 (1.00) |  |  |  |  |  |  |
DMWD | 4 (4%) | 87 | 0.254 (1.00) | 0.788 (1.00) | 0.38 (1.00) | 0.813 (1.00) | 1 (1.00) | 1 (1.00) | 0.254 (1.00) | 1 (1.00)
KISS1R | 3 (3%) | 88 | 0.872 (1.00) |  |  |  |  |  |  |
PLEC | 17 (19%) | 74 | 0.534 (1.00) | 0.75 (1.00) | 0.222 (1.00) | 0.76 (1.00) | 0.689 (1.00) | 0.537 (1.00) | 1 (1.00) | 0.634 (1.00)
FAM110C | 3 (3%) | 88 | 0.723 (1.00) | 0.7 (1.00) | 0.465 (1.00) | 0.468 (1.00) | 1 (1.00) | 0.229 (1.00) | 1 (1.00) | 0.249 (1.00)
RCCD1 | 5 (5%) | 86 | 0.694 (1.00) | 0.371 (1.00) | 0.403 (1.00) | 0.621 (1.00) | 0.781 (1.00) | 1 (1.00) | 0.796 (1.00) | 0.538 (1.00)

'CLIC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.933 (Chi-square test), Q value = 1

Table S1. Gene #1: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CLIC6 MUTATED | 5 | 3 | 1 | 1 | 1
CLIC6 WILD-TYPE | 27 | 20 | 14 | 9 | 8

'CLIC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.862 (Chi-square test), Q value = 1

Table S2. Gene #1: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CLIC6 MUTATED | 1 | 1 | 2 | 3 | 1
CLIC6 WILD-TYPE | 17 | 10 | 19 | 15 | 10

'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S3. Gene #1: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CLIC6 MUTATED | 2 | 2 | 0 | 4
CLIC6 WILD-TYPE | 22 | 12 | 17 | 19

'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4. Gene #1: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CLIC6 MUTATED | 2 | 4 | 2
CLIC6 WILD-TYPE | 21 | 29 | 20

'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S5. Gene #1: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CLIC6 MUTATED | 2 | 3 | 3
CLIC6 WILD-TYPE | 35 | 13 | 23

'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S6. Gene #1: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CLIC6 MUTATED | 3 | 2 | 3
CLIC6 WILD-TYPE | 23 | 8 | 40

'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S7. Gene #1: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CLIC6 MUTATED | 2 | 3 | 3
CLIC6 WILD-TYPE | 36 | 15 | 20

'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S8. Gene #1: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CLIC6 MUTATED | 3 | 2 | 3
CLIC6 WILD-TYPE | 38 | 9 | 24

'NMU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.151 (Chi-square test), Q value = 1

Table S9. Gene #2: 'NMU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
NMU MUTATED | 3 | 2 | 4 | 0 | 0
NMU WILD-TYPE | 29 | 21 | 11 | 10 | 9

'NMU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.442 (Chi-square test), Q value = 1

Table S10. Gene #2: 'NMU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
NMU MUTATED | 1 | 2 | 4 | 2 | 0
NMU WILD-TYPE | 17 | 9 | 17 | 16 | 11

'NMU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S11. Gene #2: 'NMU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
NMU MUTATED | 1 | 4 | 1 | 2
NMU WILD-TYPE | 23 | 10 | 16 | 21

'NMU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S12. Gene #2: 'NMU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
NMU MUTATED | 1 | 2 | 5
NMU WILD-TYPE | 22 | 31 | 17

'NMU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S13. Gene #2: 'NMU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
NMU MUTATED | 7 | 1 | 1
NMU WILD-TYPE | 30 | 15 | 25

'NMU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S14. Gene #2: 'NMU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
NMU MUTATED | 2 | 0 | 7
NMU WILD-TYPE | 24 | 10 | 36

'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S15. Gene #2: 'NMU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
NMU MUTATED | 7 | 1 | 1
NMU WILD-TYPE | 31 | 17 | 22

'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S16. Gene #2: 'NMU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
NMU MUTATED | 6 | 1 | 2
NMU WILD-TYPE | 35 | 10 | 25

'LPPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Chi-square test), Q value = 1

Table S17. Gene #3: 'LPPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
LPPR2 MUTATED | 1 | 1 | 2 | 1 | 1
LPPR2 WILD-TYPE | 31 | 22 | 13 | 9 | 8

'LPPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Chi-square test), Q value = 1

Table S18. Gene #3: 'LPPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
LPPR2 MUTATED | 0 | 1 | 3 | 1 | 1
LPPR2 WILD-TYPE | 18 | 10 | 18 | 17 | 10

'LPPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S19. Gene #3: 'LPPR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
LPPR2 MUTATED | 0 | 1 | 2 | 3
LPPR2 WILD-TYPE | 24 | 13 | 15 | 20

'LPPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S20. Gene #3: 'LPPR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
LPPR2 MUTATED | 0 | 3 | 3
LPPR2 WILD-TYPE | 23 | 30 | 19

'LPPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S21. Gene #3: 'LPPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
LPPR2 MUTATED | 4 | 0 | 2
LPPR2 WILD-TYPE | 33 | 16 | 24

'LPPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S22. Gene #3: 'LPPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
LPPR2 MUTATED | 1 | 1 | 4
LPPR2 WILD-TYPE | 25 | 9 | 39

'LPPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S23. Gene #3: 'LPPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
LPPR2 MUTATED | 4 | 0 | 2
LPPR2 WILD-TYPE | 34 | 18 | 21

'LPPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S24. Gene #3: 'LPPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
LPPR2 MUTATED | 3 | 2 | 1
LPPR2 WILD-TYPE | 38 | 9 | 26

'CHDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Chi-square test), Q value = 1

Table S25. Gene #4: 'CHDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CHDH MUTATED | 1 | 0 | 3 | 1 | 1
CHDH WILD-TYPE | 31 | 23 | 12 | 9 | 8

'CHDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Chi-square test), Q value = 1

Table S26. Gene #4: 'CHDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CHDH MUTATED | 0 | 1 | 3 | 0 | 2
CHDH WILD-TYPE | 18 | 10 | 18 | 18 | 9

'CHDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S27. Gene #4: 'CHDH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CHDH MUTATED | 1 | 1 | 2 | 2
CHDH WILD-TYPE | 23 | 13 | 15 | 21

'CHDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S28. Gene #4: 'CHDH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CHDH MUTATED | 1 | 2 | 3
CHDH WILD-TYPE | 22 | 31 | 19

'CHDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S29. Gene #4: 'CHDH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CHDH MUTATED | 3 | 1 | 2
CHDH WILD-TYPE | 34 | 15 | 24

'CHDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S30. Gene #4: 'CHDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CHDH MUTATED | 2 | 1 | 3
CHDH WILD-TYPE | 24 | 9 | 40

'CHDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S31. Gene #4: 'CHDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CHDH MUTATED | 3 | 1 | 2
CHDH WILD-TYPE | 35 | 17 | 21

'CHDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S32. Gene #4: 'CHDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CHDH MUTATED | 3 | 1 | 2
CHDH WILD-TYPE | 38 | 10 | 25

'C4ORF32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Chi-square test), Q value = 1

Table S33. Gene #5: 'C4ORF32 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
C4ORF32 MUTATED | 4 | 1 | 2 | 1 | 1
C4ORF32 WILD-TYPE | 28 | 22 | 13 | 9 | 8

'C4ORF32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Chi-square test), Q value = 1

Table S34. Gene #5: 'C4ORF32 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
C4ORF32 MUTATED | 3 | 0 | 1 | 1 | 1
C4ORF32 WILD-TYPE | 15 | 11 | 20 | 17 | 10

'C4ORF32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S35. Gene #5: 'C4ORF32 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
C4ORF32 MUTATED | 4 | 1 | 1 | 0
C4ORF32 WILD-TYPE | 20 | 13 | 16 | 23

'C4ORF32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S36. Gene #5: 'C4ORF32 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
C4ORF32 MUTATED | 3 | 2 | 1
C4ORF32 WILD-TYPE | 20 | 31 | 21

'C4ORF32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S37. Gene #5: 'C4ORF32 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
C4ORF32 MUTATED | 3 | 2 | 1
C4ORF32 WILD-TYPE | 34 | 14 | 25

'C4ORF32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S38. Gene #5: 'C4ORF32 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
C4ORF32 MUTATED | 2 | 0 | 4
C4ORF32 WILD-TYPE | 24 | 10 | 39

'C4ORF32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S39. Gene #5: 'C4ORF32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
C4ORF32 MUTATED | 3 | 3 | 0
C4ORF32 WILD-TYPE | 35 | 15 | 23

'C4ORF32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S40. Gene #5: 'C4ORF32 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
C4ORF32 MUTATED | 3 | 0 | 3
C4ORF32 WILD-TYPE | 38 | 11 | 24

'SYT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.897 (Chi-square test), Q value = 1

Table S41. Gene #6: 'SYT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
SYT8 MUTATED | 5 | 5 | 2 | 1 | 1
SYT8 WILD-TYPE | 27 | 18 | 13 | 9 | 8

'SYT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Chi-square test), Q value = 1

Table S42. Gene #6: 'SYT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
SYT8 MUTATED | 1 | 3 | 3 | 3 | 1
SYT8 WILD-TYPE | 17 | 8 | 18 | 15 | 10

'SYT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S43. Gene #6: 'SYT8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
SYT8 MUTATED | 2 | 3 | 2 | 4
SYT8 WILD-TYPE | 22 | 11 | 15 | 19

'SYT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S44. Gene #6: 'SYT8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
SYT8 MUTATED | 2 | 5 | 4
SYT8 WILD-TYPE | 21 | 28 | 18

'SYT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S45. Gene #6: 'SYT8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
SYT8 MUTATED | 5 | 2 | 4
SYT8 WILD-TYPE | 32 | 14 | 22

'SYT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S46. Gene #6: 'SYT8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
SYT8 MUTATED | 4 | 2 | 5
SYT8 WILD-TYPE | 22 | 8 | 38

'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S47. Gene #6: 'SYT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
SYT8 MUTATED | 5 | 2 | 4
SYT8 WILD-TYPE | 33 | 16 | 19

'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S48. Gene #6: 'SYT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
SYT8 MUTATED | 4 | 3 | 4
SYT8 WILD-TYPE | 37 | 8 | 23

'RINL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0471 (Chi-square test), Q value = 1

Table S49. Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RINL MUTATED | 12 | 2 | 3 | 2 | 0
RINL WILD-TYPE | 20 | 21 | 12 | 8 | 9

Figure S1. Get High-res Image Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RINL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.567 (Chi-square test), Q value = 1

Table S50. Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RINL MUTATED | 6 | 2 | 4 | 3 | 1
RINL WILD-TYPE | 12 | 9 | 17 | 15 | 10

'RINL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S51. Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RINL MUTATED | 8 | 4 | 2 | 2
RINL WILD-TYPE | 16 | 10 | 15 | 21

'RINL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S52. Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RINL MUTATED | 8 | 4 | 4
RINL WILD-TYPE | 15 | 29 | 18

'RINL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S53. Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RINL MUTATED | 9 | 4 | 3
RINL WILD-TYPE | 28 | 12 | 23

'RINL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S54. Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RINL MUTATED | 5 | 1 | 10
RINL WILD-TYPE | 21 | 9 | 33

'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S55. Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RINL MUTATED | 9 | 5 | 2
RINL WILD-TYPE | 29 | 13 | 21

'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S56. Gene #7: 'RINL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RINL MUTATED | 8 | 2 | 6
RINL WILD-TYPE | 33 | 9 | 21

'OBSCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.527 (Chi-square test), Q value = 1

Table S57. Gene #8: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
OBSCN MUTATED | 12 | 8 | 2 | 4 | 3
OBSCN WILD-TYPE | 20 | 15 | 13 | 6 | 6

'OBSCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Chi-square test), Q value = 1

Table S58. Gene #8: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
OBSCN MUTATED | 5 | 6 | 5 | 6 | 4
OBSCN WILD-TYPE | 13 | 5 | 16 | 12 | 7

'OBSCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S59. Gene #8: 'OBSCN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
OBSCN MUTATED | 10 | 3 | 8 | 5
OBSCN WILD-TYPE | 14 | 11 | 9 | 18

'OBSCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S60. Gene #8: 'OBSCN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
OBSCN MUTATED | 8 | 12 | 6
OBSCN WILD-TYPE | 15 | 21 | 16

'OBSCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S61. Gene #8: 'OBSCN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
OBSCN MUTATED | 10 | 8 | 8
OBSCN WILD-TYPE | 27 | 8 | 18

'OBSCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S62. Gene #8: 'OBSCN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
OBSCN MUTATED | 10 | 3 | 13
OBSCN WILD-TYPE | 16 | 7 | 30

'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S63. Gene #8: 'OBSCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
OBSCN MUTATED | 10 | 9 | 7
OBSCN WILD-TYPE | 28 | 9 | 16

'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S64. Gene #8: 'OBSCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
OBSCN MUTATED | 12 | 3 | 11
OBSCN WILD-TYPE | 29 | 8 | 16

'MAP1S MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Chi-square test), Q value = 1

Table S65. Gene #9: 'MAP1S MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
MAP1S MUTATED | 1 | 2 | 3 | 1 | 2
MAP1S WILD-TYPE | 31 | 21 | 12 | 9 | 7

'MAP1S MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Chi-square test), Q value = 1

Table S66. Gene #9: 'MAP1S MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
MAP1S MUTATED | 1 | 3 | 2 | 3 | 0
MAP1S WILD-TYPE | 17 | 8 | 19 | 15 | 11

'MAP1S MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S67. Gene #9: 'MAP1S MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
MAP1S MUTATED | 2 | 3 | 0 | 4
MAP1S WILD-TYPE | 22 | 11 | 17 | 19

'MAP1S MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S68. Gene #9: 'MAP1S MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
MAP1S MUTATED | 3 | 4 | 2
MAP1S WILD-TYPE | 20 | 29 | 20

'MAP1S MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S69. Gene #9: 'MAP1S MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
MAP1S MUTATED | 5 | 1 | 3
MAP1S WILD-TYPE | 32 | 15 | 23

'MAP1S MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S70. Gene #9: 'MAP1S MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
MAP1S MUTATED | 2 | 1 | 6
MAP1S WILD-TYPE | 24 | 9 | 37

'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S71. Gene #9: 'MAP1S MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
MAP1S MUTATED | 5 | 1 | 3
MAP1S WILD-TYPE | 33 | 17 | 20

'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S72. Gene #9: 'MAP1S MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
MAP1S MUTATED | 6 | 1 | 2
MAP1S WILD-TYPE | 35 | 10 | 25

'GPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.576 (Chi-square test), Q value = 1

Table S73. Gene #10: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
GPRIN2 MUTATED | 3 | 3 | 3 | 2 | 0
GPRIN2 WILD-TYPE | 29 | 20 | 12 | 8 | 9

'GPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.746 (Chi-square test), Q value = 1

Table S74. Gene #10: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
GPRIN2 MUTATED | 2 | 1 | 4 | 1 | 1
GPRIN2 WILD-TYPE | 16 | 10 | 17 | 17 | 10

'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S75. Gene #10: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
GPRIN2 MUTATED | 2 | 2 | 3 | 2
GPRIN2 WILD-TYPE | 22 | 12 | 14 | 21

'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S76. Gene #10: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
GPRIN2 MUTATED | 2 | 2 | 5
GPRIN2 WILD-TYPE | 21 | 31 | 17

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S77. Gene #10: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
GPRIN2 MUTATED | 3 | 3 | 3
GPRIN2 WILD-TYPE | 34 | 13 | 23

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S78. Gene #10: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
GPRIN2 MUTATED | 5 | 1 | 3
GPRIN2 WILD-TYPE | 21 | 9 | 40

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S79. Gene #10: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
GPRIN2 MUTATED | 3 | 4 | 2
GPRIN2 WILD-TYPE | 35 | 14 | 21

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S80. Gene #10: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
GPRIN2 MUTATED | 3 | 1 | 5
GPRIN2 WILD-TYPE | 38 | 10 | 22

'ATP9B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.853 (Chi-square test), Q value = 1

Table S81. Gene #11: 'ATP9B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ATP9B MUTATED | 1 | 1 | 1 | 1 | 1
ATP9B WILD-TYPE | 31 | 22 | 14 | 9 | 8

'ATP9B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Chi-square test), Q value = 1

Table S82. Gene #11: 'ATP9B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ATP9B MUTATED | 0 | 1 | 3 | 0 | 1
ATP9B WILD-TYPE | 18 | 10 | 18 | 18 | 10

'ATP9B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S83. Gene #11: 'ATP9B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ATP9B MUTATED | 1 | 1 | 2 | 1
ATP9B WILD-TYPE | 23 | 13 | 15 | 22

'ATP9B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S84. Gene #11: 'ATP9B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ATP9B MUTATED | 1 | 2 | 2
ATP9B WILD-TYPE | 22 | 31 | 20

'ATP9B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S85. Gene #11: 'ATP9B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ATP9B MUTATED | 2 | 1 | 2
ATP9B WILD-TYPE | 35 | 15 | 24

'ATP9B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S86. Gene #11: 'ATP9B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ATP9B MUTATED | 2 | 0 | 3
ATP9B WILD-TYPE | 24 | 10 | 40

'ATP9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S87. Gene #11: 'ATP9B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ATP9B MUTATED | 2 | 2 | 1
ATP9B WILD-TYPE | 36 | 16 | 22

'ATP9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S88. Gene #11: 'ATP9B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ATP9B MUTATED | 3 | 0 | 2
ATP9B WILD-TYPE | 38 | 11 | 25

'RREB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0932 (Chi-square test), Q value = 1

Table S89. Gene #12: 'RREB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RREB1 MUTATED | 8 | 1 | 1 | 0 | 1
RREB1 WILD-TYPE | 24 | 22 | 14 | 10 | 8

'RREB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Chi-square test), Q value = 1

Table S90. Gene #12: 'RREB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RREB1 MUTATED | 3 | 2 | 1 | 1 | 1
RREB1 WILD-TYPE | 15 | 9 | 20 | 17 | 10

'RREB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S91. Gene #12: 'RREB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RREB1 MUTATED | 4 | 1 | 1 | 1
RREB1 WILD-TYPE | 20 | 13 | 16 | 22

'RREB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S92. Gene #12: 'RREB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RREB1 MUTATED | 4 | 2 | 1
RREB1 WILD-TYPE | 19 | 31 | 21

'RREB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S93. Gene #12: 'RREB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RREB1 MUTATED | 4 | 1 | 3
RREB1 WILD-TYPE | 33 | 15 | 23

'RREB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S94. Gene #12: 'RREB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RREB1 MUTATED | 2 | 2 | 4
RREB1 WILD-TYPE | 24 | 8 | 39

'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S95. Gene #12: 'RREB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RREB1 MUTATED | 4 | 1 | 3
RREB1 WILD-TYPE | 34 | 17 | 20

'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S96. Gene #12: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RREB1 MUTATED | 4 | 2 | 2
RREB1 WILD-TYPE | 37 | 9 | 25

'IDUA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Chi-square test), Q value = 1

Table S97. Gene #13: 'IDUA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
IDUA MUTATED | 9 | 2 | 1 | 2 | 1
IDUA WILD-TYPE | 23 | 21 | 14 | 8 | 8

'IDUA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Chi-square test), Q value = 1

Table S98. Gene #13: 'IDUA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
IDUA MUTATED | 4 | 1 | 4 | 3 | 0
IDUA WILD-TYPE | 14 | 10 | 17 | 15 | 11

'IDUA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S99. Gene #13: 'IDUA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
IDUA MUTATED | 6 | 2 | 2 | 2
IDUA WILD-TYPE | 18 | 12 | 15 | 21

'IDUA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S100. Gene #13: 'IDUA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
IDUA MUTATED | 5 | 4 | 3
IDUA WILD-TYPE | 18 | 29 | 19

'IDUA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S101. Gene #13: 'IDUA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
IDUA MUTATED | 5 | 5 | 2
IDUA WILD-TYPE | 32 | 11 | 24

'IDUA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S102. Gene #13: 'IDUA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
IDUA MUTATED | 4 | 1 | 7
IDUA WILD-TYPE | 22 | 9 | 36

'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S103. Gene #13: 'IDUA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
IDUA MUTATED | 5 | 5 | 2
IDUA WILD-TYPE | 33 | 13 | 21

'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104. Gene #13: 'IDUA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
IDUA MUTATED | 6 | 2 | 4
IDUA WILD-TYPE | 35 | 9 | 23

'RGS9BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.351 (Chi-square test), Q value = 1

Table S105. Gene #14: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RGS9BP MUTATED | 3 | 3 | 2 | 3 | 0
RGS9BP WILD-TYPE | 29 | 20 | 13 | 7 | 9

'RGS9BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Chi-square test), Q value = 1

Table S106. Gene #14: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RGS9BP MUTATED | 3 | 1 | 4 | 1 | 1
RGS9BP WILD-TYPE | 15 | 10 | 17 | 17 | 10

'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S107. Gene #14: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RGS9BP MUTATED | 3 | 1 | 2 | 3
RGS9BP WILD-TYPE | 21 | 13 | 15 | 20

'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S108. Gene #14: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RGS9BP MUTATED | 3 | 3 | 3
RGS9BP WILD-TYPE | 20 | 30 | 19

'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S109. Gene #14: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RGS9BP MUTATED | 3 | 3 | 4
RGS9BP WILD-TYPE | 34 | 13 | 22

'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S110. Gene #14: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RGS9BP MUTATED | 3 | 2 | 5
RGS9BP WILD-TYPE | 23 | 8 | 38

'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S111. Gene #14: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RGS9BP MUTATED | 4 | 2 | 4
RGS9BP WILD-TYPE | 34 | 16 | 19

'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S112. Gene #14: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RGS9BP MUTATED | 5 | 2 | 3
RGS9BP WILD-TYPE | 36 | 9 | 24

'WDR34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.753 (Chi-square test), Q value = 1

Table S113. Gene #15: 'WDR34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
WDR34 MUTATED | 3 | 2 | 2 | 2 | 2
WDR34 WILD-TYPE | 29 | 21 | 13 | 8 | 7

'WDR34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.823 (Chi-square test), Q value = 1

Table S114. Gene #15: 'WDR34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
WDR34 MUTATED | 2 | 2 | 3 | 1 | 2
WDR34 WILD-TYPE | 16 | 9 | 18 | 17 | 9

'WDR34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S115. Gene #15: 'WDR34 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
WDR34 MUTATED | 4 | 1 | 2 | 3
WDR34 WILD-TYPE | 20 | 13 | 15 | 20

'WDR34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S116. Gene #15: 'WDR34 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
WDR34 MUTATED | 4 | 3 | 3
WDR34 WILD-TYPE | 19 | 30 | 19

'WDR34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S117. Gene #15: 'WDR34 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
WDR34 MUTATED | 6 | 2 | 2
WDR34 WILD-TYPE | 31 | 14 | 24

'WDR34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S118. Gene #15: 'WDR34 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
WDR34 MUTATED | 1 | 2 | 7
WDR34 WILD-TYPE | 25 | 8 | 36

'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S119. Gene #15: 'WDR34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
WDR34 MUTATED | 6 | 2 | 2
WDR34 WILD-TYPE | 32 | 16 | 21

'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S120. Gene #15: 'WDR34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
WDR34 MUTATED | 7 | 2 | 1
WDR34 WILD-TYPE | 34 | 9 | 26

'NOTCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Chi-square test), Q value = 1

Table S121. Gene #16: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
NOTCH2 MUTATED | 7 | 1 | 1 | 2 | 1
NOTCH2 WILD-TYPE | 25 | 22 | 14 | 8 | 8

'NOTCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Chi-square test), Q value = 1

Table S122. Gene #16: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
NOTCH2 MUTATED | 1 | 1 | 3 | 3 | 0
NOTCH2 WILD-TYPE | 17 | 10 | 18 | 15 | 11

'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S123. Gene #16: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
NOTCH2 MUTATED | 3 | 1 | 2 | 2
NOTCH2 WILD-TYPE | 21 | 13 | 15 | 21

'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S124. Gene #16: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
NOTCH2 MUTATED | 1 | 4 | 3
NOTCH2 WILD-TYPE | 22 | 29 | 19

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S125. Gene #16: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
NOTCH2 MUTATED | 3 | 4 | 1
NOTCH2 WILD-TYPE | 34 | 12 | 25

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S126. Gene #16: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
NOTCH2 MUTATED | 2 | 1 | 5
NOTCH2 WILD-TYPE | 24 | 9 | 38

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S127. Gene #16: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
NOTCH2 MUTATED | 3 | 4 | 1
NOTCH2 WILD-TYPE | 35 | 14 | 22

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S128. Gene #16: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
NOTCH2 MUTATED | 3 | 2 | 3
NOTCH2 WILD-TYPE | 38 | 9 | 24

'TMEM189 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Chi-square test), Q value = 1

Table S129. Gene #17: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TMEM189 MUTATED | 6 | 1 | 2 | 3 | 0
TMEM189 WILD-TYPE | 26 | 22 | 13 | 7 | 9

'TMEM189 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.854 (Chi-square test), Q value = 1

Table S130. Gene #17: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TMEM189 MUTATED | 2 | 2 | 3 | 1 | 1
TMEM189 WILD-TYPE | 16 | 9 | 18 | 17 | 10

'TMEM189 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S131. Gene #17: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TMEM189 MUTATED | 4 | 3 | 1 | 1
TMEM189 WILD-TYPE | 20 | 11 | 16 | 22

'TMEM189 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 1

Table S132. Gene #17: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TMEM189 MUTATED | 5 | 1 | 3
TMEM189 WILD-TYPE | 18 | 32 | 19

'TMEM189 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S133. Gene #17: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TMEM189 MUTATED | 5 | 3 | 1
TMEM189 WILD-TYPE | 32 | 13 | 25

'TMEM189 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S134. Gene #17: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TMEM189 MUTATED | 3 | 0 | 6
TMEM189 WILD-TYPE | 23 | 10 | 37

'TMEM189 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S135. Gene #17: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TMEM189 MUTATED | 5 | 3 | 1
TMEM189 WILD-TYPE | 33 | 15 | 22

'TMEM189 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S136. Gene #17: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TMEM189 MUTATED | 6 | 0 | 3
TMEM189 WILD-TYPE | 35 | 11 | 24

'TAF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Chi-square test), Q value = 1

Table S137. Gene #18: 'TAF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TAF5 MUTATED | 7 | 2 | 2 | 0 | 1
TAF5 WILD-TYPE | 25 | 21 | 13 | 10 | 8

'TAF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Chi-square test), Q value = 1

Table S138. Gene #18: 'TAF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TAF5 MUTATED | 2 | 3 | 2 | 2 | 2
TAF5 WILD-TYPE | 16 | 8 | 19 | 16 | 9

'TAF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S139. Gene #18: 'TAF5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TAF5 MUTATED | 4 | 2 | 2 | 3
TAF5 WILD-TYPE | 20 | 12 | 15 | 20

'TAF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S140. Gene #18: 'TAF5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TAF5 MUTATED | 5 | 4 | 2
TAF5 WILD-TYPE | 18 | 29 | 20

'TAF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S141. Gene #18: 'TAF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TAF5 MUTATED | 4 | 4 | 3
TAF5 WILD-TYPE | 33 | 12 | 23

'TAF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S142. Gene #18: 'TAF5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TAF5 MUTATED | 7 | 0 | 4
TAF5 WILD-TYPE | 19 | 10 | 39

'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S143. Gene #18: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TAF5 MUTATED | 4 | 5 | 2
TAF5 WILD-TYPE | 34 | 13 | 21

'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S144. Gene #18: 'TAF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TAF5 MUTATED | 3 | 1 | 7
TAF5 WILD-TYPE | 38 | 10 | 20

'LRP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00701 (Chi-square test), Q value = 1

Table S145. Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
LRP11 MUTATED | 1 | 2 | 1 | 4 | 0
LRP11 WILD-TYPE | 31 | 21 | 14 | 6 | 9

Figure S2. Get High-res Image Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.373 (Chi-square test), Q value = 1

Table S146. Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
LRP11 MUTATED | 1 | 0 | 4 | 1 | 1
LRP11 WILD-TYPE | 17 | 11 | 17 | 17 | 10

'LRP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S147. Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
LRP11 MUTATED | 2 | 1 | 2 | 2
LRP11 WILD-TYPE | 22 | 13 | 15 | 21

'LRP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S148. Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
LRP11 MUTATED | 2 | 2 | 3
LRP11 WILD-TYPE | 21 | 31 | 19

'LRP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S149. Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
LRP11 MUTATED | 4 | 2 | 1
LRP11 WILD-TYPE | 33 | 14 | 25

'LRP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S150. Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
LRP11 MUTATED | 2 | 0 | 5
LRP11 WILD-TYPE | 24 | 10 | 38

'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S151. Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
LRP11 MUTATED | 4 | 2 | 1
LRP11 WILD-TYPE | 34 | 16 | 22

'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S152. Gene #19: 'LRP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
LRP11 MUTATED | 4 | 1 | 2
LRP11 WILD-TYPE | 37 | 10 | 25

'FPGS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Chi-square test), Q value = 1

Table S153. Gene #20: 'FPGS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
FPGS MUTATED | 2 | 4 | 4 | 3 | 1
FPGS WILD-TYPE | 30 | 19 | 11 | 7 | 8

'FPGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.515 (Chi-square test), Q value = 1

Table S154. Gene #20: 'FPGS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
FPGS MUTATED | 1 | 1 | 5 | 2 | 2
FPGS WILD-TYPE | 17 | 10 | 16 | 16 | 9

'FPGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 1

Table S155. Gene #20: 'FPGS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
FPGS MUTATED | 2 | 4 | 0 | 5
FPGS WILD-TYPE | 22 | 10 | 17 | 18

'FPGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S156. Gene #20: 'FPGS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
FPGS MUTATED | 3 | 5 | 3
FPGS WILD-TYPE | 20 | 28 | 19

'FPGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S157. Gene #20: 'FPGS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
FPGS MUTATED | 4 | 2 | 5
FPGS WILD-TYPE | 33 | 14 | 21

'FPGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S158. Gene #20: 'FPGS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
FPGS MUTATED | 4 | 1 | 6
FPGS WILD-TYPE | 22 | 9 | 37

'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S159. Gene #20: 'FPGS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
FPGS MUTATED | 5 | 1 | 5
FPGS WILD-TYPE | 33 | 17 | 18

'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S160. Gene #20: 'FPGS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
FPGS MUTATED | 6 | 1 | 4
FPGS WILD-TYPE | 35 | 10 | 23

'BAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.956 (Chi-square test), Q value = 1

Table S161. Gene #21: 'BAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
BAG1 MUTATED | 2 | 1 | 1 | 1 | 1
BAG1 WILD-TYPE | 30 | 22 | 14 | 9 | 8

'BAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Chi-square test), Q value = 1

Table S162. Gene #21: 'BAG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
BAG1 MUTATED | 1 | 0 | 3 | 0 | 1
BAG1 WILD-TYPE | 17 | 11 | 18 | 18 | 10

'BAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S163. Gene #21: 'BAG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
BAG1 MUTATED | 1 | 0 | 2 | 2
BAG1 WILD-TYPE | 23 | 14 | 15 | 21

'BAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S164. Gene #21: 'BAG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
BAG1 MUTATED | 1 | 3 | 1
BAG1 WILD-TYPE | 22 | 30 | 21

'BAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S165. Gene #21: 'BAG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
BAG1 MUTATED | 1 | 1 | 3
BAG1 WILD-TYPE | 36 | 15 | 23

'BAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0804 (Fisher's exact test), Q value = 1

Table S166. Gene #21: 'BAG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
BAG1 MUTATED | 2 | 2 | 1
BAG1 WILD-TYPE | 24 | 8 | 42

'BAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S167. Gene #21: 'BAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
BAG1 MUTATED | 1 | 1 | 3
BAG1 WILD-TYPE | 37 | 17 | 20

'BAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S168. Gene #21: 'BAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
BAG1 MUTATED | 1 | 2 | 2
BAG1 WILD-TYPE | 40 | 9 | 25

'FZD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.424 (Chi-square test), Q value = 1

Table S169. Gene #22: 'FZD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
FZD1 MUTATED | 3 | 0 | 2 | 1 | 0
FZD1 WILD-TYPE | 29 | 23 | 13 | 9 | 9

'FZD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Chi-square test), Q value = 1

Table S170. Gene #22: 'FZD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
FZD1 MUTATED | 0 | 1 | 2 | 0 | 0
FZD1 WILD-TYPE | 18 | 10 | 19 | 18 | 11

'FZD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S171. Gene #22: 'FZD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
FZD1 MUTATED | 1 | 1 | 1 | 0
FZD1 WILD-TYPE | 23 | 13 | 16 | 23

'FZD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S172. Gene #22: 'FZD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
FZD1 MUTATED | 1 | 0 | 2
FZD1 WILD-TYPE | 22 | 33 | 20

'FZD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S173. Gene #22: 'FZD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
FZD1 MUTATED | 3 | 0 | 0
FZD1 WILD-TYPE | 34 | 16 | 26

'FZD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S174. Gene #22: 'FZD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
FZD1 MUTATED | 0 | 0 | 3
FZD1 WILD-TYPE | 26 | 10 | 40

'FZD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S175. Gene #22: 'FZD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
FZD1 MUTATED | 3 | 0 | 0
FZD1 WILD-TYPE | 35 | 18 | 23

'FZD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S176. Gene #22: 'FZD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
FZD1 MUTATED | 3 | 0 | 0
FZD1 WILD-TYPE | 38 | 11 | 27

'TOR3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.674 (Chi-square test), Q value = 1

Table S177. Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TOR3A MUTATED | 10 | 4 | 4 | 4 | 2
TOR3A WILD-TYPE | 22 | 19 | 11 | 6 | 7

'TOR3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0628 (Chi-square test), Q value = 1

Table S178. Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TOR3A MUTATED | 3 | 0 | 8 | 8 | 3
TOR3A WILD-TYPE | 15 | 11 | 13 | 10 | 8

'TOR3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S179. Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TOR3A MUTATED | 4 | 4 | 6 | 8
TOR3A WILD-TYPE | 20 | 10 | 11 | 15

'TOR3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 1

Table S180. Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TOR3A MUTATED | 2 | 13 | 7
TOR3A WILD-TYPE | 21 | 20 | 15

Figure S3. Get High-res Image Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TOR3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S181. Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TOR3A MUTATED | 10 | 4 | 8
TOR3A WILD-TYPE | 27 | 12 | 18

'TOR3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S182. Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TOR3A MUTATED | 10 | 1 | 11
TOR3A WILD-TYPE | 16 | 9 | 32

'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S183. Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TOR3A MUTATED | 10 | 5 | 7
TOR3A WILD-TYPE | 28 | 13 | 16

'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S184. Gene #23: 'TOR3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TOR3A MUTATED | 10 | 2 | 10
TOR3A WILD-TYPE | 31 | 9 | 17

'TMEM200C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.652 (Chi-square test), Q value = 1

Table S185. Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TMEM200C MUTATED | 3 | 0 | 1 | 1 | 1
TMEM200C WILD-TYPE | 29 | 23 | 14 | 9 | 8

'TMEM200C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Chi-square test), Q value = 1

Table S186. Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TMEM200C MUTATED | 0 | 0 | 2 | 0 | 1
TMEM200C WILD-TYPE | 18 | 11 | 19 | 18 | 10

'TMEM200C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 1

Table S187. Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TMEM200C MUTATED | 0 | 0 | 3 | 0
TMEM200C WILD-TYPE | 24 | 14 | 14 | 23

Figure S4. Get High-res Image Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'TMEM200C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S188. Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TMEM200C MUTATED | 0 | 1 | 2
TMEM200C WILD-TYPE | 23 | 32 | 20

'TMEM200C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S189. Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TMEM200C MUTATED | 2 | 0 | 1
TMEM200C WILD-TYPE | 35 | 16 | 25

'TMEM200C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S190. Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TMEM200C MUTATED | 1 | 0 | 2
TMEM200C WILD-TYPE | 25 | 10 | 41

'TMEM200C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S191. Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TMEM200C MUTATED | 2 | 1 | 0
TMEM200C WILD-TYPE | 36 | 17 | 23

'TMEM200C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S192. Gene #24: 'TMEM200C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TMEM200C MUTATED | 2 | 0 | 1
TMEM200C WILD-TYPE | 39 | 11 | 26

'ZNF517 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.59 (Chi-square test), Q value = 1

Table S193. Gene #25: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ZNF517 MUTATED | 14 | 9 | 6 | 2 | 2
ZNF517 WILD-TYPE | 18 | 14 | 9 | 8 | 7

'ZNF517 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.962 (Chi-square test), Q value = 1

Table S194. Gene #25: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ZNF517 MUTATED | 7 | 3 | 7 | 6 | 3
ZNF517 WILD-TYPE | 11 | 8 | 14 | 12 | 8

'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S195. Gene #25: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ZNF517 MUTATED | 9 | 6 | 5 | 6
ZNF517 WILD-TYPE | 15 | 8 | 12 | 17

'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S196. Gene #25: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ZNF517 MUTATED | 8 | 10 | 8
ZNF517 WILD-TYPE | 15 | 23 | 14

'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S197. Gene #25: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ZNF517 MUTATED | 12 | 7 | 7
ZNF517 WILD-TYPE | 25 | 9 | 19

'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S198. Gene #25: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ZNF517 MUTATED | 9 | 3 | 14
ZNF517 WILD-TYPE | 17 | 7 | 29

'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S199. Gene #25: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ZNF517 MUTATED | 13 | 7 | 6
ZNF517 WILD-TYPE | 25 | 11 | 17

'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S200. Gene #25: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ZNF517 MUTATED | 13 | 4 | 9
ZNF517 WILD-TYPE | 28 | 7 | 18

'DMRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.635 (Chi-square test), Q value = 1

Table S201. Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
DMRT1 MUTATED | 1 | 2 | 0 | 1 | 1
DMRT1 WILD-TYPE | 31 | 21 | 15 | 9 | 8

'DMRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Chi-square test), Q value = 1

Table S202. Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
DMRT1 MUTATED | 0 | 0 | 1 | 1 | 2
DMRT1 WILD-TYPE | 18 | 11 | 20 | 17 | 9

'DMRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S203. Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
DMRT1 MUTATED | 0 | 0 | 2 | 2
DMRT1 WILD-TYPE | 24 | 14 | 15 | 21

'DMRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S204. Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
DMRT1 MUTATED | 0 | 4 | 0
DMRT1 WILD-TYPE | 23 | 29 | 22

'DMRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 1

Table S205. Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
DMRT1 MUTATED | 0 | 0 | 4
DMRT1 WILD-TYPE | 37 | 16 | 22

Figure S5. Get High-res Image Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DMRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 1

Table S206. Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
DMRT1 MUTATED | 1 | 3 | 0
DMRT1 WILD-TYPE | 25 | 7 | 43

Figure S6. Get High-res Image Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DMRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 1

Table S207. Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
DMRT1 MUTATED | 0 | 1 | 3
DMRT1 WILD-TYPE | 38 | 17 | 20

'DMRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00318 (Fisher's exact test), Q value = 1

Table S208. Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
DMRT1 MUTATED | 0 | 3 | 1
DMRT1 WILD-TYPE | 41 | 8 | 26

Figure S7. Get High-res Image Gene #26: 'DMRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GLTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Chi-square test), Q value = 1

Table S209. Gene #27: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
GLTPD2 MUTATED | 7 | 2 | 4 | 4 | 2
GLTPD2 WILD-TYPE | 25 | 21 | 11 | 6 | 7

'GLTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.962 (Chi-square test), Q value = 1

Table S210. Gene #27: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
GLTPD2 MUTATED | 3 | 2 | 5 | 4 | 3
GLTPD2 WILD-TYPE | 15 | 9 | 16 | 14 | 8

'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S211. Gene #27: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
GLTPD2 MUTATED | 6 | 3 | 3 | 5
GLTPD2 WILD-TYPE | 18 | 11 | 14 | 18

'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S212. Gene #27: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
GLTPD2 MUTATED | 5 | 6 | 6
GLTPD2 WILD-TYPE | 18 | 27 | 16

'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S213. Gene #27: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
GLTPD2 MUTATED | 8 | 5 | 4
GLTPD2 WILD-TYPE | 29 | 11 | 22

'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S214. Gene #27: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
GLTPD2 MUTATED | 4 | 3 | 10
GLTPD2 WILD-TYPE | 22 | 7 | 33

'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S215. Gene #27: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
GLTPD2 MUTATED | 8 | 5 | 4
GLTPD2 WILD-TYPE | 30 | 13 | 19

'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S216. Gene #27: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
GLTPD2 MUTATED | 9 | 3 | 5
GLTPD2 WILD-TYPE | 32 | 8 | 22

'SEMA5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.191 (Chi-square test), Q value = 1

Table S217. Gene #28: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
SEMA5B MUTATED | 10 | 2 | 2 | 1 | 1
SEMA5B WILD-TYPE | 22 | 21 | 13 | 9 | 8

'SEMA5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Chi-square test), Q value = 1

Table S218. Gene #28: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
SEMA5B MUTATED | 4 | 1 | 2 | 4 | 1
SEMA5B WILD-TYPE | 14 | 10 | 19 | 14 | 10

'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S219. Gene #28: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
SEMA5B MUTATED | 6 | 3 | 0 | 3
SEMA5B WILD-TYPE | 18 | 11 | 17 | 20

'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S220. Gene #28: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
SEMA5B MUTATED | 6 | 4 | 2
SEMA5B WILD-TYPE | 17 | 29 | 20

'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S221. Gene #28: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
SEMA5B MUTATED | 6 | 3 | 3
SEMA5B WILD-TYPE | 31 | 13 | 23

'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S222. Gene #28: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
SEMA5B MUTATED | 5 | 1 | 6
SEMA5B WILD-TYPE | 21 | 9 | 37

'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223. Gene #28: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
SEMA5B MUTATED | 6 | 3 | 3
SEMA5B WILD-TYPE | 32 | 15 | 20

'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S224. Gene #28: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
SEMA5B MUTATED | 6 | 1 | 5
SEMA5B WILD-TYPE | 35 | 10 | 22

'TNIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.589 (Chi-square test), Q value = 1

Table S225. Gene #29: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TNIP2 MUTATED | 4 | 1 | 0 | 1 | 1
TNIP2 WILD-TYPE | 28 | 22 | 15 | 9 | 8

'TNIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.293 (Chi-square test), Q value = 1

Table S226. Gene #29: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TNIP2 MUTATED | 1 | 2 | 2 | 0 | 0
TNIP2 WILD-TYPE | 17 | 9 | 19 | 18 | 11

'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S227. Gene #29: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TNIP2 MUTATED | 2 | 0 | 2 | 1
TNIP2 WILD-TYPE | 22 | 14 | 15 | 22

'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S228. Gene #29: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TNIP2 MUTATED | 2 | 1 | 2
TNIP2 WILD-TYPE | 21 | 32 | 20

'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S229. Gene #29: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TNIP2 MUTATED | 3 | 1 | 1
TNIP2 WILD-TYPE | 34 | 15 | 25

'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S230. Gene #29: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TNIP2 MUTATED | 0 | 1 | 4
TNIP2 WILD-TYPE | 26 | 9 | 39

'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S231. Gene #29: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TNIP2 MUTATED | 3 | 1 | 1
TNIP2 WILD-TYPE | 35 | 17 | 22

'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S232. Gene #29: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TNIP2 MUTATED | 4 | 1 | 0
TNIP2 WILD-TYPE | 37 | 10 | 27

'HHIPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Chi-square test), Q value = 1

Table S233. Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
HHIPL1 MUTATED | 6 | 1 | 4 | 3 | 0
HHIPL1 WILD-TYPE | 26 | 22 | 11 | 7 | 9

'HHIPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.961 (Chi-square test), Q value = 1

Table S234. Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
HHIPL1 MUTATED | 2 | 1 | 3 | 3 | 2
HHIPL1 WILD-TYPE | 16 | 10 | 18 | 15 | 9

'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S235. Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
HHIPL1 MUTATED | 5 | 3 | 2 | 1
HHIPL1 WILD-TYPE | 19 | 11 | 15 | 22

'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S236. Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
HHIPL1 MUTATED | 3 | 4 | 4
HHIPL1 WILD-TYPE | 20 | 29 | 18

'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 1

Table S237. Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
HHIPL1 MUTATED | 9 | 2 | 0
HHIPL1 WILD-TYPE | 28 | 14 | 26

Figure S8. Get High-res Image Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 1

Table S238. Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
HHIPL1 MUTATED | 1 | 0 | 10
HHIPL1 WILD-TYPE | 25 | 10 | 33

Figure S9. Get High-res Image Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S239. Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
HHIPL1 MUTATED | 9 | 2 | 0
HHIPL1 WILD-TYPE | 29 | 16 | 23

Figure S10. Get High-res Image Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S240. Gene #30: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
HHIPL1 MUTATED | 9 | 0 | 2
HHIPL1 WILD-TYPE | 32 | 11 | 25

'HECTD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.746 (Chi-square test), Q value = 1

Table S241. Gene #31: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
HECTD2 MUTATED | 3 | 1 | 2 | 1 | 0
HECTD2 WILD-TYPE | 29 | 22 | 13 | 9 | 9

'HECTD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Chi-square test), Q value = 1

Table S242. Gene #31: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
HECTD2 MUTATED | 3 | 0 | 2 | 1 | 0
HECTD2 WILD-TYPE | 15 | 11 | 19 | 17 | 11

'HECTD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S243. Gene #31: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
HECTD2 MUTATED | 3 | 2 | 0 | 1
HECTD2 WILD-TYPE | 21 | 12 | 17 | 22

'HECTD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S244. Gene #31: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
HECTD2 MUTATED | 3 | 1 | 2
HECTD2 WILD-TYPE | 20 | 32 | 20

'HECTD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S245. Gene #31: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
HECTD2 MUTATED | 3 | 2 | 1
HECTD2 WILD-TYPE | 34 | 14 | 25

'HECTD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S246. Gene #31: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
HECTD2 MUTATED | 2 | 1 | 3
HECTD2 WILD-TYPE | 24 | 9 | 40

'HECTD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S247. Gene #31: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
HECTD2 MUTATED | 3 | 2 | 1
HECTD2 WILD-TYPE | 35 | 16 | 22

'HECTD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S248. Gene #31: 'HECTD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
HECTD2 MUTATED | 3 | 1 | 2
HECTD2 WILD-TYPE | 38 | 10 | 25

'ADAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Chi-square test), Q value = 1

Table S249. Gene #32: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ADAD2 MUTATED | 5 | 1 | 5 | 3 | 1
ADAD2 WILD-TYPE | 27 | 22 | 10 | 7 | 8

'ADAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Chi-square test), Q value = 1

Table S250. Gene #32: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ADAD2 MUTATED | 1 | 0 | 6 | 3 | 3
ADAD2 WILD-TYPE | 17 | 11 | 15 | 15 | 8

'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S251. Gene #32: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ADAD2 MUTATED | 3 | 3 | 3 | 4
ADAD2 WILD-TYPE | 21 | 11 | 14 | 19

'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S252. Gene #32: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ADAD2 MUTATED | 2 | 5 | 6
ADAD2 WILD-TYPE | 21 | 28 | 16

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S253. Gene #32: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ADAD2 MUTATED | 5 | 4 | 4
ADAD2 WILD-TYPE | 32 | 12 | 22

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S254. Gene #32: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ADAD2 MUTATED | 6 | 1 | 6
ADAD2 WILD-TYPE | 20 | 9 | 37

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S255. Gene #32: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ADAD2 MUTATED | 5 | 4 | 4
ADAD2 WILD-TYPE | 33 | 14 | 19

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S256. Gene #32: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ADAD2 MUTATED | 6 | 1 | 6
ADAD2 WILD-TYPE | 35 | 10 | 21

'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.435 (Chi-square test), Q value = 1

Table S257. Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CTNNB1 MUTATED | 7 | 2 | 3 | 2 | 0
CTNNB1 WILD-TYPE | 25 | 21 | 12 | 8 | 9

'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0574 (Chi-square test), Q value = 1

Table S258. Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CTNNB1 MUTATED | 5 | 4 | 2 | 0 | 2
CTNNB1 WILD-TYPE | 13 | 7 | 19 | 18 | 9

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.000193 (Fisher's exact test), Q value = 0.22

Table S259. Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CTNNB1 MUTATED | 8 | 5 | 0 | 0
CTNNB1 WILD-TYPE | 16 | 9 | 17 | 23

Figure S11. Get High-res Image Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3.12e-05 (Fisher's exact test), Q value = 0.036

Table S260. Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CTNNB1 MUTATED | 10 | 0 | 3
CTNNB1 WILD-TYPE | 13 | 33 | 19

Figure S12. Get High-res Image Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.000643 (Fisher's exact test), Q value = 0.74

Table S261. Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CTNNB1 MUTATED | 6 | 7 | 0
CTNNB1 WILD-TYPE | 31 | 9 | 26

Figure S13. Get High-res Image Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S262. Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CTNNB1 MUTATED | 4 | 0 | 9
CTNNB1 WILD-TYPE | 22 | 10 | 34

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 1

Table S263. Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CTNNB1 MUTATED | 7 | 6 | 0
CTNNB1 WILD-TYPE | 31 | 12 | 23

Figure S14. Get High-res Image Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S264. Gene #33: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CTNNB1 MUTATED | 9 | 0 | 4
CTNNB1 WILD-TYPE | 32 | 11 | 23

'ZFPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Chi-square test), Q value = 1

Table S265. Gene #34: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ZFPM1 MUTATED | 19 | 10 | 8 | 8 | 3
ZFPM1 WILD-TYPE | 13 | 13 | 7 | 2 | 6

'ZFPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Chi-square test), Q value = 1

Table S266. Gene #34: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ZFPM1 MUTATED | 10 | 6 | 9 | 10 | 5
ZFPM1 WILD-TYPE | 8 | 5 | 12 | 8 | 6

'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S267. Gene #34: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ZFPM1 MUTATED | 13 | 6 | 9 | 12
ZFPM1 WILD-TYPE | 11 | 8 | 8 | 11

'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S268. Gene #34: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ZFPM1 MUTATED | 13 | 16 | 11
ZFPM1 WILD-TYPE | 10 | 17 | 11

'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S269. Gene #34: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ZFPM1 MUTATED | 19 | 9 | 12
ZFPM1 WILD-TYPE | 18 | 7 | 14

'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S270. Gene #34: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ZFPM1 MUTATED | 16 | 3 | 21
ZFPM1 WILD-TYPE | 10 | 7 | 22

'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S271. Gene #34: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ZFPM1 MUTATED | 19 | 11 | 10
ZFPM1 WILD-TYPE | 19 | 7 | 13

'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S272. Gene #34: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ZFPM1 MUTATED | 20 | 4 | 16
ZFPM1 WILD-TYPE | 21 | 7 | 11

'CLDN23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Chi-square test), Q value = 1

Table S273. Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CLDN23 MUTATED | 3 | 5 | 2 | 0 | 3
CLDN23 WILD-TYPE | 29 | 18 | 13 | 10 | 6

'CLDN23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.361 (Chi-square test), Q value = 1

Table S274. Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CLDN23 MUTATED | 1 | 3 | 2 | 3 | 3
CLDN23 WILD-TYPE | 17 | 8 | 19 | 15 | 8

'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S275. Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CLDN23 MUTATED | 1 | 2 | 1 | 8
CLDN23 WILD-TYPE | 23 | 12 | 16 | 15

Figure S15. Get High-res Image Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S276. Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CLDN23 MUTATED | 3 | 8 | 1
CLDN23 WILD-TYPE | 20 | 25 | 21

'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S277. Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CLDN23 MUTATED | 3 | 2 | 7
CLDN23 WILD-TYPE | 34 | 14 | 19

'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S278. Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CLDN23 MUTATED | 4 | 3 | 5
CLDN23 WILD-TYPE | 22 | 7 | 38

'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S279. Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CLDN23 MUTATED | 3 | 3 | 6
CLDN23 WILD-TYPE | 35 | 15 | 17

'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S280. Gene #35: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CLDN23 MUTATED | 5 | 3 | 4
CLDN23 WILD-TYPE | 36 | 8 | 23

'CCDC105 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0641 (Chi-square test), Q value = 1

Table S281. Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CCDC105 MUTATED | 3 | 2 | 2 | 4 | 0
CCDC105 WILD-TYPE | 29 | 21 | 13 | 6 | 9

'CCDC105 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00159 (Chi-square test), Q value = 1

Table S282. Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CCDC105 MUTATED | 1 | 5 | 1 | 0 | 3
CCDC105 WILD-TYPE | 17 | 6 | 20 | 18 | 8

Figure S16. Get High-res Image Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S283. Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CCDC105 MUTATED | 4 | 2 | 2 | 2
CCDC105 WILD-TYPE | 20 | 12 | 15 | 21

'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S284. Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CCDC105 MUTATED | 6 | 2 | 2
CCDC105 WILD-TYPE | 17 | 31 | 20

'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S285. Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CCDC105 MUTATED | 7 | 1 | 2
CCDC105 WILD-TYPE | 30 | 15 | 24

'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S286. Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CCDC105 MUTATED | 0 | 1 | 9
CCDC105 WILD-TYPE | 26 | 9 | 34

Figure S17. Get High-res Image Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S287. Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CCDC105 MUTATED | 7 | 2 | 1
CCDC105 WILD-TYPE | 31 | 16 | 22

'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 1

Table S288. Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CCDC105 MUTATED | 9 | 1 | 0
CCDC105 WILD-TYPE | 32 | 10 | 27

Figure S18. Get High-res Image Gene #36: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DMKN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.688 (Chi-square test), Q value = 1

Table S289. Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
DMKN MUTATED | 1 | 1 | 0 | 1 | 0
DMKN WILD-TYPE | 31 | 22 | 15 | 9 | 9

'DMKN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Chi-square test), Q value = 1

Table S290. Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
DMKN MUTATED | 0 | 1 | 2 | 0 | 0
DMKN WILD-TYPE | 18 | 10 | 19 | 18 | 11

'DMKN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S291. Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
DMKN MUTATED | 1 | 1 | 1 | 0
DMKN WILD-TYPE | 23 | 13 | 16 | 23

'DMKN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S292. Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
DMKN MUTATED | 1 | 0 | 2
DMKN WILD-TYPE | 22 | 33 | 20

'DMKN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00708 (Fisher's exact test), Q value = 1

Table S293. Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
DMKN MUTATED | 0 | 3 | 0
DMKN WILD-TYPE | 37 | 13 | 26

Figure S19. Get High-res Image Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DMKN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S294. Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
DMKN MUTATED | 1 | 0 | 2
DMKN WILD-TYPE | 25 | 10 | 41

'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 1

Table S295. Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
DMKN MUTATED | 0 | 3 | 0
DMKN WILD-TYPE | 38 | 15 | 23

Figure S20. Get High-res Image Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S296. Gene #37: 'DMKN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
DMKN MUTATED | 2 | 0 | 1
DMKN WILD-TYPE | 39 | 11 | 26

'NOL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.469 (Chi-square test), Q value = 1

Table S297. Gene #38: 'NOL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
NOL9 MUTATED | 5 | 2 | 1 | 3 | 1
NOL9 WILD-TYPE | 27 | 21 | 14 | 7 | 8

'NOL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.647 (Chi-square test), Q value = 1

Table S298. Gene #38: 'NOL9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
NOL9 MUTATED | 3 | 2 | 2 | 2 | 0
NOL9 WILD-TYPE | 15 | 9 | 19 | 16 | 11

'NOL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S299. Gene #38: 'NOL9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
NOL9 MUTATED | 5 | 0 | 2 | 2
NOL9 WILD-TYPE | 19 | 14 | 15 | 21

'NOL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S300. Gene #38: 'NOL9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
NOL9 MUTATED | 5 | 2 | 2
NOL9 WILD-TYPE | 18 | 31 | 20

'NOL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S301. Gene #38: 'NOL9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
NOL9 MUTATED | 5 | 2 | 2
NOL9 WILD-TYPE | 32 | 14 | 24

'NOL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S302. Gene #38: 'NOL9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
NOL9 MUTATED | 3 | 0 | 6
NOL9 WILD-TYPE | 23 | 10 | 37

'NOL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S303. Gene #38: 'NOL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
NOL9 MUTATED | 5 | 2 | 2
NOL9 WILD-TYPE | 33 | 16 | 21

'NOL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S304. Gene #38: 'NOL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
NOL9 MUTATED | 6 | 0 | 3
NOL9 WILD-TYPE | 35 | 11 | 24

'C19ORF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Chi-square test), Q value = 1

Table S305. Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
C19ORF10 MUTATED | 4 | 2 | 1 | 2 | 0
C19ORF10 WILD-TYPE | 28 | 21 | 14 | 8 | 9

'C19ORF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Chi-square test), Q value = 1

Table S306. Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
C19ORF10 MUTATED | 4 | 1 | 3 | 0 | 0
C19ORF10 WILD-TYPE | 14 | 10 | 18 | 18 | 11

'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S307. Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
C19ORF10 MUTATED | 3 | 3 | 2 | 0
C19ORF10 WILD-TYPE | 21 | 11 | 15 | 23

'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00708 (Fisher's exact test), Q value = 1

Table S308. Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
C19ORF10 MUTATED | 3 | 0 | 5
C19ORF10 WILD-TYPE | 20 | 33 | 17

Figure S21. Get High-res Image Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S309. Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
C19ORF10 MUTATED | 4 | 3 | 1
C19ORF10 WILD-TYPE | 33 | 13 | 25

'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S310. Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
C19ORF10 MUTATED | 3 | 0 | 5
C19ORF10 WILD-TYPE | 23 | 10 | 38

'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S311. Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
C19ORF10 MUTATED | 5 | 3 | 0
C19ORF10 WILD-TYPE | 33 | 15 | 23

'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S312. Gene #39: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
C19ORF10 MUTATED | 5 | 0 | 3
C19ORF10 WILD-TYPE | 36 | 11 | 24

'ZNF598 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.427 (Chi-square test), Q value = 1

Table S313. Gene #40: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ZNF598 MUTATED | 8 | 3 | 2 | 4 | 2
ZNF598 WILD-TYPE | 24 | 20 | 13 | 6 | 7

'ZNF598 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Chi-square test), Q value = 1

Table S314. Gene #40: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ZNF598 MUTATED | 3 | 0 | 3 | 5 | 2
ZNF598 WILD-TYPE | 15 | 11 | 18 | 13 | 9

'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S315. Gene #40: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ZNF598 MUTATED | 5 | 1 | 3 | 4
ZNF598 WILD-TYPE | 19 | 13 | 14 | 19

'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S316. Gene #40: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ZNF598 MUTATED | 4 | 6 | 3
ZNF598 WILD-TYPE | 19 | 27 | 19

'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S317. Gene #40: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ZNF598 MUTATED | 5 | 3 | 5
ZNF598 WILD-TYPE | 32 | 13 | 21

'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S318. Gene #40: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ZNF598 MUTATED | 5 | 1 | 7
ZNF598 WILD-TYPE | 21 | 9 | 36

'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S319. Gene #40: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ZNF598 MUTATED | 5 | 3 | 5
ZNF598 WILD-TYPE | 33 | 15 | 18

'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S320. Gene #40: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ZNF598 MUTATED | 6 | 1 | 6
ZNF598 WILD-TYPE | 35 | 10 | 21

'THEM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00763 (Chi-square test), Q value = 1

Table S321. Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
THEM4 MUTATED | 4 | 0 | 3 | 5 | 2
THEM4 WILD-TYPE | 28 | 23 | 12 | 5 | 7

Figure S22. Get High-res Image Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Chi-square test), Q value = 1

Table S322. Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
THEM4 MUTATED | 1 | 3 | 3 | 1 | 3
THEM4 WILD-TYPE | 17 | 8 | 18 | 17 | 8

'THEM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S323. Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
THEM4 MUTATED | 3 | 2 | 3 | 3
THEM4 WILD-TYPE | 21 | 12 | 14 | 20

'THEM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S324. Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
THEM4 MUTATED | 4 | 4 | 3
THEM4 WILD-TYPE | 19 | 29 | 19

'THEM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S325. Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
THEM4 MUTATED | 6 | 3 | 2
THEM4 WILD-TYPE | 31 | 13 | 24

'THEM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S326. Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
THEM4 MUTATED | 1 | 2 | 8
THEM4 WILD-TYPE | 25 | 8 | 35

'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S327. Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
THEM4 MUTATED | 6 | 3 | 2
THEM4 WILD-TYPE | 32 | 15 | 21

'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0872 (Fisher's exact test), Q value = 1

Table S328. Gene #41: 'THEM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
THEM4 MUTATED | 7 | 3 | 1
THEM4 WILD-TYPE | 34 | 8 | 26

'LRIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.533 (Chi-square test), Q value = 1

Table S329. Gene #42: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
LRIG1 MUTATED | 12 | 5 | 7 | 4 | 4
LRIG1 WILD-TYPE | 20 | 18 | 8 | 6 | 5

'LRIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.731 (Chi-square test), Q value = 1

Table S330. Gene #42: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
LRIG1 MUTATED | 6 | 5 | 8 | 6 | 2
LRIG1 WILD-TYPE | 12 | 6 | 13 | 12 | 9

'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S331. Gene #42: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
LRIG1 MUTATED | 9 | 6 | 4 | 7
LRIG1 WILD-TYPE | 15 | 8 | 13 | 16

'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S332. Gene #42: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
LRIG1 MUTATED | 9 | 11 | 6
LRIG1 WILD-TYPE | 14 | 22 | 16

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S333. Gene #42: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
LRIG1 MUTATED | 12 | 8 | 7
LRIG1 WILD-TYPE | 25 | 8 | 19

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S334. Gene #42: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
LRIG1 MUTATED | 8 | 4 | 15
LRIG1 WILD-TYPE | 18 | 6 | 28

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S335. Gene #42: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
LRIG1 MUTATED | 13 | 7 | 7
LRIG1 WILD-TYPE | 25 | 11 | 16

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S336. Gene #42: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
LRIG1 MUTATED | 14 | 5 | 8
LRIG1 WILD-TYPE | 27 | 6 | 19

'MUC5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Chi-square test), Q value = 1

Table S337. Gene #43: 'MUC5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
MUC5B MUTATED | 7 | 6 | 4 | 3 | 4
MUC5B WILD-TYPE | 25 | 17 | 11 | 7 | 5

'MUC5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Chi-square test), Q value = 1

Table S338. Gene #43: 'MUC5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
MUC5B MUTATED | 3 | 3 | 7 | 4 | 6
MUC5B WILD-TYPE | 15 | 8 | 14 | 14 | 5

'MUC5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S339. Gene #43: 'MUC5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
MUC5B MUTATED | 5 | 4 | 8 | 6
MUC5B WILD-TYPE | 19 | 10 | 9 | 17

'MUC5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S340. Gene #43: 'MUC5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
MUC5B MUTATED | 4 | 11 | 8
MUC5B WILD-TYPE | 19 | 22 | 14

'MUC5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S341. Gene #43: 'MUC5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
MUC5B MUTATED | 9 | 5 | 9
MUC5B WILD-TYPE | 28 | 11 | 17

'MUC5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S342. Gene #43: 'MUC5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
MUC5B MUTATED | 8 | 3 | 12
MUC5B WILD-TYPE | 18 | 7 | 31

'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S343. Gene #43: 'MUC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
MUC5B MUTATED | 9 | 7 | 7
MUC5B WILD-TYPE | 29 | 11 | 16

'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S344. Gene #43: 'MUC5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
MUC5B MUTATED | 11 | 3 | 9
MUC5B WILD-TYPE | 30 | 8 | 18

'CTGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Chi-square test), Q value = 1

Table S345. Gene #44: 'CTGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CTGF MUTATED | 3 | 2 | 0 | 0 | 1
CTGF WILD-TYPE | 29 | 21 | 15 | 10 | 8

'CTGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Chi-square test), Q value = 1

Table S346. Gene #44: 'CTGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CTGF MUTATED | 0 | 1 | 1 | 1 | 2
CTGF WILD-TYPE | 18 | 10 | 20 | 17 | 9

'CTGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S347. Gene #44: 'CTGF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CTGF MUTATED | 2 | 1 | 0 | 2
CTGF WILD-TYPE | 22 | 13 | 17 | 21

'CTGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S348. Gene #44: 'CTGF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CTGF MUTATED | 1 | 3 | 1
CTGF WILD-TYPE | 22 | 30 | 21

'CTGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S349. Gene #44: 'CTGF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CTGF MUTATED | 1 | 2 | 2
CTGF WILD-TYPE | 36 | 14 | 24

'CTGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S350. Gene #44: 'CTGF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CTGF MUTATED | 1 | 2 | 2
CTGF WILD-TYPE | 25 | 8 | 41

'CTGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S351. Gene #44: 'CTGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CTGF MUTATED | 1 | 2 | 2
CTGF WILD-TYPE | 37 | 16 | 21

'CTGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S352. Gene #44: 'CTGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CTGF MUTATED | 1 | 2 | 2
CTGF WILD-TYPE | 40 | 9 | 25

'AMDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0677 (Chi-square test), Q value = 1

Table S353. Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
AMDHD1 MUTATED | 8 | 2 | 2 | 5 | 1
AMDHD1 WILD-TYPE | 24 | 21 | 13 | 5 | 8

'AMDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.896 (Chi-square test), Q value = 1

Table S354. Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
AMDHD1 MUTATED | 2 | 2 | 5 | 3 | 2
AMDHD1 WILD-TYPE | 16 | 9 | 16 | 15 | 9

'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S355. Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
AMDHD1 MUTATED | 5 | 3 | 4 | 2
AMDHD1 WILD-TYPE | 19 | 11 | 13 | 21

'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S356. Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
AMDHD1 MUTATED | 3 | 6 | 5
AMDHD1 WILD-TYPE | 20 | 27 | 17

'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S357. Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
AMDHD1 MUTATED | 6 | 5 | 3
AMDHD1 WILD-TYPE | 31 | 11 | 23

'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S358. Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
AMDHD1 MUTATED | 6 | 0 | 8
AMDHD1 WILD-TYPE | 20 | 10 | 35

'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S359. Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
AMDHD1 MUTATED | 6 | 7 | 1
AMDHD1 WILD-TYPE | 32 | 11 | 22

Figure S23. Get High-res Image Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S360. Gene #45: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
AMDHD1 MUTATED | 6 | 1 | 7
AMDHD1 WILD-TYPE | 35 | 10 | 20

'RNF149 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.768 (Chi-square test), Q value = 1

Table S361. Gene #46: 'RNF149 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RNF149 MUTATED | 2 | 3 | 1 | 1 | 0
RNF149 WILD-TYPE | 30 | 20 | 14 | 9 | 9

'RNF149 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Chi-square test), Q value = 1

Table S362. Gene #46: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RNF149 MUTATED | 1 | 0 | 2 | 1 | 2
RNF149 WILD-TYPE | 17 | 11 | 19 | 17 | 9

'RNF149 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S363. Gene #46: 'RNF149 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RNF149 MUTATED | 1 | 1 | 2 | 2
RNF149 WILD-TYPE | 23 | 13 | 15 | 21

'RNF149 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S364. Gene #46: 'RNF149 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RNF149 MUTATED | 1 | 3 | 2
RNF149 WILD-TYPE | 22 | 30 | 20

'RNF149 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S365. Gene #46: 'RNF149 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RNF149 MUTATED | 1 | 3 | 2
RNF149 WILD-TYPE | 36 | 13 | 24

'RNF149 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S366. Gene #46: 'RNF149 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RNF149 MUTATED | 4 | 1 | 1
RNF149 WILD-TYPE | 22 | 9 | 42

'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S367. Gene #46: 'RNF149 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RNF149 MUTATED | 1 | 3 | 2
RNF149 WILD-TYPE | 37 | 15 | 21

'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S368. Gene #46: 'RNF149 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RNF149 MUTATED | 1 | 1 | 4
RNF149 WILD-TYPE | 40 | 10 | 23

'MSH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00899 (Chi-square test), Q value = 1

Table S369. Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
MSH3 MUTATED | 1 | 0 | 1 | 3 | 0
MSH3 WILD-TYPE | 31 | 23 | 14 | 7 | 9

Figure S24. Get High-res Image Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MSH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Chi-square test), Q value = 1

Table S370. Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
MSH3 MUTATED | 1 | 0 | 2 | 0 | 1
MSH3 WILD-TYPE | 17 | 11 | 19 | 18 | 10

'MSH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 1

Table S371. Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
MSH3 MUTATED | 1 | 0 | 3 | 0
MSH3 WILD-TYPE | 23 | 14 | 14 | 23

'MSH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S372. Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
MSH3 MUTATED | 1 | 1 | 2
MSH3 WILD-TYPE | 22 | 32 | 20

'MSH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S373. Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
MSH3 MUTATED | 4 | 0 | 0
MSH3 WILD-TYPE | 33 | 16 | 26

'MSH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S374. Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
MSH3 MUTATED | 0 | 0 | 4
MSH3 WILD-TYPE | 26 | 10 | 39

'MSH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S375. Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
MSH3 MUTATED | 4 | 0 | 0
MSH3 WILD-TYPE | 34 | 18 | 23

'MSH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S376. Gene #47: 'MSH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
MSH3 MUTATED | 4 | 0 | 0
MSH3 WILD-TYPE | 37 | 11 | 27

'ALPPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.907 (Chi-square test), Q value = 1

Table S377. Gene #48: 'ALPPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ALPPL2 MUTATED | 3 | 1 | 2 | 1 | 1
ALPPL2 WILD-TYPE | 29 | 22 | 13 | 9 | 8

'ALPPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.121 (Chi-square test), Q value = 1

Table S378. Gene #48: 'ALPPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ALPPL2 MUTATED | 4 | 0 | 0 | 2 | 2
ALPPL2 WILD-TYPE | 14 | 11 | 21 | 16 | 9

'ALPPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S379. Gene #48: 'ALPPL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ALPPL2 MUTATED | 4 | 1 | 0 | 3
ALPPL2 WILD-TYPE | 20 | 13 | 17 | 20

'ALPPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S380. Gene #48: 'ALPPL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ALPPL2 MUTATED | 4 | 3 | 1
ALPPL2 WILD-TYPE | 19 | 30 | 21

'ALPPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S381. Gene #48: 'ALPPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ALPPL2 MUTATED | 5 | 1 | 2
ALPPL2 WILD-TYPE | 32 | 15 | 24

'ALPPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S382. Gene #48: 'ALPPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ALPPL2 MUTATED | 1 | 2 | 5
ALPPL2 WILD-TYPE | 25 | 8 | 38

'ALPPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S383. Gene #48: 'ALPPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ALPPL2 MUTATED | 5 | 1 | 2
ALPPL2 WILD-TYPE | 33 | 17 | 21

'ALPPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S384. Gene #48: 'ALPPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ALPPL2 MUTATED | 5 | 2 | 1
ALPPL2 WILD-TYPE | 36 | 9 | 26

'SNED1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.671 (Chi-square test), Q value = 1

Table S385. Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
SNED1 MUTATED | 4 | 1 | 1 | 0 | 1
SNED1 WILD-TYPE | 28 | 22 | 14 | 10 | 8

'SNED1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.623 (Chi-square test), Q value = 1

Table S386. Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
SNED1 MUTATED | 2 | 2 | 2 | 1 | 0
SNED1 WILD-TYPE | 16 | 9 | 19 | 17 | 11

'SNED1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S387. Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
SNED1 MUTATED | 4 | 1 | 1 | 1
SNED1 WILD-TYPE | 20 | 13 | 16 | 22

'SNED1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S388. Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
SNED1 MUTATED | 3 | 2 | 2
SNED1 WILD-TYPE | 20 | 31 | 20

'SNED1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 1

Table S389. Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
SNED1 MUTATED | 2 | 4 | 1
SNED1 WILD-TYPE | 35 | 12 | 25

Figure S25. Get High-res Image Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SNED1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S390. Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
SNED1 MUTATED | 3 | 1 | 3
SNED1 WILD-TYPE | 23 | 9 | 40

'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 1

Table S391. Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
SNED1 MUTATED | 2 | 4 | 1
SNED1 WILD-TYPE | 36 | 14 | 22

'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S392. Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
SNED1 MUTATED | 3 | 1 | 3
SNED1 WILD-TYPE | 38 | 10 | 24

'NOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Chi-square test), Q value = 1

Table S393. Gene #50: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
NOXA1 MUTATED | 3 | 0 | 2 | 0 | 0
NOXA1 WILD-TYPE | 29 | 23 | 13 | 10 | 9

'NOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Chi-square test), Q value = 1

Table S394. Gene #50: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
NOXA1 MUTATED | 2 | 0 | 1 | 0 | 0
NOXA1 WILD-TYPE | 16 | 11 | 20 | 18 | 11

'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S395. Gene #50: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
NOXA1 MUTATED | 2 | 1 | 0 | 0
NOXA1 WILD-TYPE | 22 | 13 | 17 | 23

'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S396. Gene #50: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
NOXA1 MUTATED | 2 | 0 | 1
NOXA1 WILD-TYPE | 21 | 33 | 21

'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S397. Gene #50: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
NOXA1 MUTATED | 3 | 0 | 0
NOXA1 WILD-TYPE | 34 | 16 | 26

'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S398. Gene #50: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
NOXA1 MUTATED | 0 | 0 | 3
NOXA1 WILD-TYPE | 26 | 10 | 40

'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S399. Gene #50: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
NOXA1 MUTATED | 3 | 0 | 0
NOXA1 WILD-TYPE | 35 | 18 | 23

'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S400. Gene #50: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
NOXA1 MUTATED | 3 | 0 | 0
NOXA1 WILD-TYPE | 38 | 11 | 27

'OPRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Chi-square test), Q value = 1

Table S401. Gene #51: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
OPRD1 MUTATED | 12 | 6 | 4 | 4 | 0
OPRD1 WILD-TYPE | 20 | 17 | 11 | 6 | 9

'OPRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.832 (Chi-square test), Q value = 1

Table S402. Gene #51: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
OPRD1 MUTATED | 6 | 2 | 6 | 4 | 4
OPRD1 WILD-TYPE | 12 | 9 | 15 | 14 | 7

'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S403. Gene #51: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
OPRD1 MUTATED | 8 | 5 | 3 | 6
OPRD1 WILD-TYPE | 16 | 9 | 14 | 17

'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S404. Gene #51: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
OPRD1 MUTATED | 7 | 8 | 7
OPRD1 WILD-TYPE | 16 | 25 | 15

'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S405. Gene #51: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
OPRD1 MUTATED | 12 | 5 | 5
OPRD1 WILD-TYPE | 25 | 11 | 21

'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S406. Gene #51: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
OPRD1 MUTATED | 8 | 1 | 13
OPRD1 WILD-TYPE | 18 | 9 | 30

'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S407. Gene #51: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
OPRD1 MUTATED | 12 | 5 | 5
OPRD1 WILD-TYPE | 26 | 13 | 18

'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S408. Gene #51: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
OPRD1 MUTATED | 11 | 2 | 9
OPRD1 WILD-TYPE | 30 | 9 | 18

'CCDC102A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.587 (Chi-square test), Q value = 1

Table S409. Gene #52: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CCDC102A MUTATED | 9 | 8 | 2 | 4 | 3
CCDC102A WILD-TYPE | 23 | 15 | 13 | 6 | 6

'CCDC102A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Chi-square test), Q value = 1

Table S410. Gene #52: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CCDC102A MUTATED | 4 | 3 | 8 | 5 | 3
CCDC102A WILD-TYPE | 14 | 8 | 13 | 13 | 8

'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S411. Gene #52: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CCDC102A MUTATED | 6 | 5 | 5 | 7
CCDC102A WILD-TYPE | 18 | 9 | 12 | 16

'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S412. Gene #52: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CCDC102A MUTATED | 6 | 11 | 6
CCDC102A WILD-TYPE | 17 | 22 | 16

'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S413. Gene #52: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CCDC102A MUTATED | 11 | 3 | 9
CCDC102A WILD-TYPE | 26 | 13 | 17

'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S414. Gene #52: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CCDC102A MUTATED | 8 | 4 | 11
CCDC102A WILD-TYPE | 18 | 6 | 32

'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S415. Gene #52: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CCDC102A MUTATED | 11 | 4 | 8
CCDC102A WILD-TYPE | 27 | 14 | 15

'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S416. Gene #52: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CCDC102A MUTATED | 10 | 5 | 8
CCDC102A WILD-TYPE | 31 | 6 | 19

'KCTD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Chi-square test), Q value = 1

Table S417. Gene #53: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KCTD3 MUTATED | 2 | 1 | 2 | 3 | 0
KCTD3 WILD-TYPE | 30 | 22 | 13 | 7 | 9

'KCTD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0699 (Chi-square test), Q value = 1

Table S418. Gene #53: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
KCTD3 MUTATED | 0 | 0 | 2 | 1 | 3
KCTD3 WILD-TYPE | 18 | 11 | 19 | 17 | 8

'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S419. Gene #53: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
KCTD3 MUTATED | 1 | 2 | 1 | 2
KCTD3 WILD-TYPE | 23 | 12 | 16 | 21

'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S420. Gene #53: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
KCTD3 MUTATED | 1 | 2 | 3
KCTD3 WILD-TYPE | 22 | 31 | 19

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S421. Gene #53: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
KCTD3 MUTATED | 3 | 1 | 2
KCTD3 WILD-TYPE | 34 | 15 | 24

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S422. Gene #53: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
KCTD3 MUTATED | 1 | 1 | 4
KCTD3 WILD-TYPE | 25 | 9 | 39

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S423. Gene #53: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
KCTD3 MUTATED | 3 | 1 | 2
KCTD3 WILD-TYPE | 35 | 17 | 21

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S424. Gene #53: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
KCTD3 MUTATED | 4 | 1 | 1
KCTD3 WILD-TYPE | 37 | 10 | 26

'C1ORF106 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Chi-square test), Q value = 1

Table S425. Gene #54: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
C1ORF106 MUTATED | 7 | 3 | 3 | 2 | 1
C1ORF106 WILD-TYPE | 25 | 20 | 12 | 8 | 8

'C1ORF106 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Chi-square test), Q value = 1

Table S426. Gene #54: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
C1ORF106 MUTATED | 3 | 1 | 4 | 2 | 4
C1ORF106 WILD-TYPE | 15 | 10 | 17 | 16 | 7

'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S427. Gene #54: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
C1ORF106 MUTATED | 6 | 3 | 3 | 2
C1ORF106 WILD-TYPE | 18 | 11 | 14 | 21

'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S428. Gene #54: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
C1ORF106 MUTATED | 5 | 6 | 3
C1ORF106 WILD-TYPE | 18 | 27 | 19

'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S429. Gene #54: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
C1ORF106 MUTATED | 7 | 3 | 4
C1ORF106 WILD-TYPE | 30 | 13 | 22

'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S430. Gene #54: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
C1ORF106 MUTATED | 4 | 3 | 7
C1ORF106 WILD-TYPE | 22 | 7 | 36

'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S431. Gene #54: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
C1ORF106 MUTATED | 7 | 4 | 3
C1ORF106 WILD-TYPE | 31 | 14 | 20

'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S432. Gene #54: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
C1ORF106 MUTATED | 7 | 3 | 4
C1ORF106 WILD-TYPE | 34 | 8 | 23

'KCNK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Chi-square test), Q value = 1

Table S433. Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KCNK17 MUTATED | 4 | 3 | 5 | 3 | 4
KCNK17 WILD-TYPE | 28 | 20 | 10 | 7 | 5

'KCNK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0959 (Chi-square test), Q value = 1

Table S434. Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
KCNK17 MUTATED | 3 | 3 | 9 | 2 | 1
KCNK17 WILD-TYPE | 15 | 8 | 12 | 16 | 10

'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S435. Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
KCNK17 MUTATED | 3 | 5 | 6 | 4
KCNK17 WILD-TYPE | 21 | 9 | 11 | 19

'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 1

Table S436. Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
KCNK17 MUTATED | 2 | 6 | 10
KCNK17 WILD-TYPE | 21 | 27 | 12

Figure S26. Get High-res Image Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437. Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
KCNK17 MUTATED | 8 | 4 | 6
KCNK17 WILD-TYPE | 29 | 12 | 20

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S438. Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
KCNK17 MUTATED | 4 | 4 | 10
KCNK17 WILD-TYPE | 22 | 6 | 33

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S439. Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
KCNK17 MUTATED | 8 | 5 | 5
KCNK17 WILD-TYPE | 30 | 13 | 18

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S440. Gene #55: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
KCNK17 MUTATED | 9 | 4 | 5
KCNK17 WILD-TYPE | 32 | 7 | 22

'LACTB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0645 (Chi-square test), Q value = 1

Table S441. Gene #56: 'LACTB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
LACTB MUTATED | 8 | 6 | 3 | 7 | 3
LACTB WILD-TYPE | 24 | 17 | 12 | 3 | 6

'LACTB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Chi-square test), Q value = 1

Table S442. Gene #56: 'LACTB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
LACTB MUTATED | 3 | 5 | 5 | 5 | 5
LACTB WILD-TYPE | 15 | 6 | 16 | 13 | 6

'LACTB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S443. Gene #56: 'LACTB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
LACTB MUTATED | 8 | 3 | 5 | 7
LACTB WILD-TYPE | 16 | 11 | 12 | 16

'LACTB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S444. Gene #56: 'LACTB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
LACTB MUTATED | 7 | 10 | 6
LACTB WILD-TYPE | 16 | 23 | 16

'LACTB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S445. Gene #56: 'LACTB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
LACTB MUTATED | 9 | 6 | 8
LACTB WILD-TYPE | 28 | 10 | 18

'LACTB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S446. Gene #56: 'LACTB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
LACTB MUTATED | 7 | 4 | 12
LACTB WILD-TYPE | 19 | 6 | 31

'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S447. Gene #56: 'LACTB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
LACTB MUTATED | 9 | 7 | 7
LACTB WILD-TYPE | 29 | 11 | 16

'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S448. Gene #56: 'LACTB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
LACTB MUTATED | 11 | 4 | 8
LACTB WILD-TYPE | 30 | 7 | 19

'TRIOBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.713 (Chi-square test), Q value = 1

Table S449. Gene #57: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TRIOBP MUTATED | 10 | 5 | 5 | 3 | 1
TRIOBP WILD-TYPE | 22 | 18 | 10 | 7 | 8

'TRIOBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.709 (Chi-square test), Q value = 1

Table S450. Gene #57: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TRIOBP MUTATED | 6 | 2 | 4 | 4 | 4
TRIOBP WILD-TYPE | 12 | 9 | 17 | 14 | 7

'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S451. Gene #57: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TRIOBP MUTATED | 7 | 4 | 4 | 4
TRIOBP WILD-TYPE | 17 | 10 | 13 | 19

'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S452. Gene #57: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TRIOBP MUTATED | 7 | 9 | 3
TRIOBP WILD-TYPE | 16 | 24 | 19

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S453. Gene #57: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TRIOBP MUTATED | 9 | 4 | 7
TRIOBP WILD-TYPE | 28 | 12 | 19

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S454. Gene #57: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TRIOBP MUTATED | 7 | 3 | 10
TRIOBP WILD-TYPE | 19 | 7 | 33

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S455. Gene #57: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TRIOBP MUTATED | 9 | 5 | 6
TRIOBP WILD-TYPE | 29 | 13 | 17

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S456. Gene #57: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TRIOBP MUTATED | 10 | 3 | 7
TRIOBP WILD-TYPE | 31 | 8 | 20

'SARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0196 (Chi-square test), Q value = 1

Table S457. Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
SARM1 MUTATED | 8 | 1 | 0 | 4 | 1
SARM1 WILD-TYPE | 24 | 22 | 15 | 6 | 8

Figure S27. Get High-res Image Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.471 (Chi-square test), Q value = 1

Table S458. Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
SARM1 MUTATED | 0 | 2 | 3 | 3 | 1
SARM1 WILD-TYPE | 18 | 9 | 18 | 15 | 10

'SARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S459. Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
SARM1 MUTATED | 3 | 1 | 3 | 2
SARM1 WILD-TYPE | 21 | 13 | 14 | 21

'SARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S460. Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
SARM1 MUTATED | 2 | 4 | 3
SARM1 WILD-TYPE | 21 | 29 | 19

'SARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S461. Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
SARM1 MUTATED | 3 | 3 | 3
SARM1 WILD-TYPE | 34 | 13 | 23

'SARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S462. Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
SARM1 MUTATED | 3 | 2 | 4
SARM1 WILD-TYPE | 23 | 8 | 39

'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S463. Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
SARM1 MUTATED | 3 | 4 | 2
SARM1 WILD-TYPE | 35 | 14 | 21

'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 1

Table S464. Gene #58: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
SARM1 MUTATED | 2 | 3 | 4
SARM1 WILD-TYPE | 39 | 8 | 23

'ERCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0188 (Chi-square test), Q value = 1

Table S465. Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ERCC2 MUTATED | 5 | 3 | 7 | 4 | 0
ERCC2 WILD-TYPE | 27 | 20 | 8 | 6 | 9

Figure S28. Get High-res Image Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Chi-square test), Q value = 1

Table S466. Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ERCC2 MUTATED | 5 | 4 | 7 | 1 | 2
ERCC2 WILD-TYPE | 13 | 7 | 14 | 17 | 9

'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S467. Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ERCC2 MUTATED | 7 | 6 | 4 | 2
ERCC2 WILD-TYPE | 17 | 8 | 13 | 21

'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00307 (Fisher's exact test), Q value = 1

Table S468. Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ERCC2 MUTATED | 8 | 2 | 9
ERCC2 WILD-TYPE | 15 | 31 | 13

Figure S29. Get High-res Image Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S469. Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ERCC2 MUTATED | 12 | 4 | 3
ERCC2 WILD-TYPE | 25 | 12 | 23

'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0678 (Fisher's exact test), Q value = 1

Table S470. Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ERCC2 MUTATED | 5 | 0 | 14
ERCC2 WILD-TYPE | 21 | 10 | 29

'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 1

Table S471. Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ERCC2 MUTATED | 13 | 4 | 2
ERCC2 WILD-TYPE | 25 | 14 | 21

'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 1

Table S472. Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ERCC2 MUTATED | 14 | 0 | 5
ERCC2 WILD-TYPE | 27 | 11 | 22

Figure S30. Get High-res Image Gene #59: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NEFH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Chi-square test), Q value = 1

Table S473. Gene #60: 'NEFH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
NEFH MUTATED | 6 | 1 | 3 | 0 | 0
NEFH WILD-TYPE | 26 | 22 | 12 | 10 | 9

'NEFH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Chi-square test), Q value = 1

Table S474. Gene #60: 'NEFH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
NEFH MUTATED | 3 | 0 | 2 | 3 | 0
NEFH WILD-TYPE | 15 | 11 | 19 | 15 | 11

'NEFH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S475. Gene #60: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
NEFH MUTATED | 4 | 2 | 0 | 1
NEFH WILD-TYPE | 20 | 12 | 17 | 22

'NEFH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S476. Gene #60: 'NEFH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
NEFH MUTATED | 2 | 3 | 2
NEFH WILD-TYPE | 21 | 30 | 20

'NEFH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S477. Gene #60: 'NEFH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
NEFH MUTATED | 5 | 2 | 1
NEFH WILD-TYPE | 32 | 14 | 25

'NEFH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S478. Gene #60: 'NEFH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
NEFH MUTATED | 2 | 0 | 6
NEFH WILD-TYPE | 24 | 10 | 37

'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S479. Gene #60: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
NEFH MUTATED | 5 | 2 | 1
NEFH WILD-TYPE | 33 | 16 | 22

'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S480. Gene #60: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
NEFH MUTATED | 5 | 0 | 3
NEFH WILD-TYPE | 36 | 11 | 24

'KBTBD13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.344 (Chi-square test), Q value = 1

Table S481. Gene #61: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KBTBD13 MUTATED | 6 | 6 | 1 | 2 | 0
KBTBD13 WILD-TYPE | 26 | 17 | 14 | 8 | 9

'KBTBD13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Chi-square test), Q value = 1

Table S482. Gene #61: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
KBTBD13 MUTATED | 3 | 2 | 2 | 4 | 4
KBTBD13 WILD-TYPE | 15 | 9 | 19 | 14 | 7

'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S483. Gene #61: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
KBTBD13 MUTATED | 6 | 2 | 2 | 5
KBTBD13 WILD-TYPE | 18 | 12 | 15 | 18

'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S484. Gene #61: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
KBTBD13 MUTATED | 6 | 8 | 1
KBTBD13 WILD-TYPE | 17 | 25 | 21

'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S485. Gene #61: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
KBTBD13 MUTATED | 7 | 2 | 6
KBTBD13 WILD-TYPE | 30 | 14 | 20

'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S486. Gene #61: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
KBTBD13 MUTATED | 6 | 2 | 7
KBTBD13 WILD-TYPE | 20 | 8 | 36

'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S487. Gene #61: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
KBTBD13 MUTATED | 7 | 2 | 6
KBTBD13 WILD-TYPE | 31 | 16 | 17

'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S488. Gene #61: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
KBTBD13 MUTATED | 7 | 2 | 6
KBTBD13 WILD-TYPE | 34 | 9 | 21

'IRX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.315 (Chi-square test), Q value = 1

Table S489. Gene #62: 'IRX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
IRX3 MUTATED | 10 | 2 | 5 | 2 | 2
IRX3 WILD-TYPE | 22 | 21 | 10 | 8 | 7

'IRX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.538 (Chi-square test), Q value = 1

Table S490. Gene #62: 'IRX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
IRX3 MUTATED | 2 | 3 | 5 | 3 | 4
IRX3 WILD-TYPE | 16 | 8 | 16 | 15 | 7

'IRX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S491. Gene #62: 'IRX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
IRX3 MUTATED | 7 | 5 | 2 | 3
IRX3 WILD-TYPE | 17 | 9 | 15 | 20

'IRX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S492. Gene #62: 'IRX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
IRX3 MUTATED | 6 | 5 | 6
IRX3 WILD-TYPE | 17 | 28 | 16

'IRX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S493. Gene #62: 'IRX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
IRX3 MUTATED | 9 | 5 | 3
IRX3 WILD-TYPE | 28 | 11 | 23

'IRX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S494. Gene #62: 'IRX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
IRX3 MUTATED | 6 | 1 | 10
IRX3 WILD-TYPE | 20 | 9 | 33

'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S495. Gene #62: 'IRX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
IRX3 MUTATED | 9 | 6 | 2
IRX3 WILD-TYPE | 29 | 12 | 21

'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S496. Gene #62: 'IRX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
IRX3 MUTATED | 9 | 2 | 6
IRX3 WILD-TYPE | 32 | 9 | 21

'MUC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.829 (Chi-square test), Q value = 1

Table S497. Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
MUC2 MUTATED | 5 | 4 | 3 | 2 | 3
MUC2 WILD-TYPE | 27 | 19 | 12 | 8 | 6

'MUC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0845 (Chi-square test), Q value = 1

Table S498. Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
MUC2 MUTATED | 0 | 2 | 7 | 4 | 1
MUC2 WILD-TYPE | 18 | 9 | 14 | 14 | 10

'MUC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 1

Table S499. Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
MUC2 MUTATED | 1 | 4 | 5 | 4
MUC2 WILD-TYPE | 23 | 10 | 12 | 19

'MUC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 1

Table S500. Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
MUC2 MUTATED | 1 | 7 | 6
MUC2 WILD-TYPE | 22 | 26 | 16

'MUC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S501. Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
MUC2 MUTATED | 4 | 5 | 5
MUC2 WILD-TYPE | 33 | 11 | 21

'MUC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S502. Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
MUC2 MUTATED | 9 | 1 | 4
MUC2 WILD-TYPE | 17 | 9 | 39

Figure S31. Get High-res Image Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MUC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S503. Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
MUC2 MUTATED | 4 | 6 | 4
MUC2 WILD-TYPE | 34 | 12 | 19

'MUC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 1

Table S504. Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
MUC2 MUTATED | 4 | 1 | 9
MUC2 WILD-TYPE | 37 | 10 | 18

Figure S32. Get High-res Image Gene #63: 'MUC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Chi-square test), Q value = 1

Table S505. Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
GARS MUTATED | 12 | 6 | 6 | 5 | 6
GARS WILD-TYPE | 20 | 17 | 9 | 5 | 3

'GARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.562 (Chi-square test), Q value = 1

Table S506. Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
GARS MUTATED | 5 | 2 | 9 | 7 | 5
GARS WILD-TYPE | 13 | 9 | 12 | 11 | 6

'GARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S507. Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
GARS MUTATED | 8 | 3 | 7 | 10
GARS WILD-TYPE | 16 | 11 | 10 | 13

'GARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S508. Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
GARS MUTATED | 6 | 16 | 6
GARS WILD-TYPE | 17 | 17 | 16

'GARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S509. Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
GARS MUTATED | 10 | 5 | 13
GARS WILD-TYPE | 27 | 11 | 13

'GARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 1

Table S510. Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
GARS MUTATED | 13 | 5 | 10
GARS WILD-TYPE | 13 | 5 | 33

Figure S33. Get High-res Image Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S511. Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
GARS MUTATED | 10 | 6 | 12
GARS WILD-TYPE | 28 | 12 | 11

'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0908 (Fisher's exact test), Q value = 1

Table S512. Gene #64: 'GARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
GARS MUTATED | 10 | 5 | 13
GARS WILD-TYPE | 31 | 6 | 14

'UQCRFS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.885 (Chi-square test), Q value = 1

Table S513. Gene #65: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
UQCRFS1 MUTATED | 4 | 2 | 3 | 1 | 1
UQCRFS1 WILD-TYPE | 28 | 21 | 12 | 9 | 8

'UQCRFS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.429 (Chi-square test), Q value = 1

Table S514. Gene #65: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
UQCRFS1 MUTATED | 4 | 1 | 5 | 1 | 1
UQCRFS1 WILD-TYPE | 14 | 10 | 16 | 17 | 10

'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S515. Gene #65: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
UQCRFS1 MUTATED | 4 | 2 | 3 | 2
UQCRFS1 WILD-TYPE | 20 | 12 | 14 | 21

'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S516. Gene #65: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
UQCRFS1 MUTATED | 4 | 3 | 4
UQCRFS1 WILD-TYPE | 19 | 30 | 18

'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S517. Gene #65: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
UQCRFS1 MUTATED | 8 | 1 | 3
UQCRFS1 WILD-TYPE | 29 | 15 | 23

'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 1

Table S518. Gene #65: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
UQCRFS1 MUTATED | 1 | 3 | 8
UQCRFS1 WILD-TYPE | 25 | 7 | 35

'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S519. Gene #65: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
UQCRFS1 MUTATED | 8 | 1 | 3
UQCRFS1 WILD-TYPE | 30 | 17 | 20

'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0653 (Fisher's exact test), Q value = 1

Table S520. Gene #65: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
UQCRFS1 MUTATED | 8 | 3 | 1
UQCRFS1 WILD-TYPE | 33 | 8 | 26

'ATXN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Chi-square test), Q value = 1

Table S521. Gene #66: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ATXN1 MUTATED | 5 | 4 | 3 | 0 | 2
ATXN1 WILD-TYPE | 27 | 19 | 12 | 10 | 7

'ATXN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Chi-square test), Q value = 1

Table S522. Gene #66: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ATXN1 MUTATED | 1 | 4 | 2 | 2 | 2
ATXN1 WILD-TYPE | 17 | 7 | 19 | 16 | 9

'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S523. Gene #66: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ATXN1 MUTATED | 2 | 3 | 3 | 3
ATXN1 WILD-TYPE | 22 | 11 | 14 | 20

'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S524. Gene #66: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ATXN1 MUTATED | 3 | 4 | 4
ATXN1 WILD-TYPE | 20 | 29 | 18

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S525. Gene #66: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ATXN1 MUTATED | 5 | 3 | 3
ATXN1 WILD-TYPE | 32 | 13 | 23

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S526. Gene #66: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ATXN1 MUTATED | 3 | 1 | 7
ATXN1 WILD-TYPE | 23 | 9 | 36

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S527. Gene #66: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ATXN1 MUTATED | 5 | 3 | 3
ATXN1 WILD-TYPE | 33 | 15 | 20

'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S528. Gene #66: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ATXN1 MUTATED | 7 | 1 | 3
ATXN1 WILD-TYPE | 34 | 10 | 24

'ZNF628 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0739 (Chi-square test), Q value = 1

Table S529. Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ZNF628 MUTATED | 7 | 1 | 0 | 2 | 0
ZNF628 WILD-TYPE | 25 | 22 | 15 | 8 | 9

'ZNF628 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Chi-square test), Q value = 1

Table S530. Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ZNF628 MUTATED | 3 | 2 | 1 | 1 | 0
ZNF628 WILD-TYPE | 15 | 9 | 20 | 17 | 11

'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 1

Table S531. Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ZNF628 MUTATED | 5 | 1 | 1 | 0
ZNF628 WILD-TYPE | 19 | 13 | 16 | 23

'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 1

Table S532. Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ZNF628 MUTATED | 5 | 1 | 1
ZNF628 WILD-TYPE | 18 | 32 | 21

'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 1

Table S533. Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ZNF628 MUTATED | 2 | 4 | 1
ZNF628 WILD-TYPE | 35 | 12 | 25

Figure S34. Get High-res Image Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S534. Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ZNF628 MUTATED | 4 | 0 | 3
ZNF628 WILD-TYPE | 22 | 10 | 40

'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 1

Table S535. Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ZNF628 MUTATED | 3 | 4 | 0
ZNF628 WILD-TYPE | 35 | 14 | 23

Figure S35. Get High-res Image Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S536. Gene #67: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ZNF628 MUTATED | 3 | 0 | 4
ZNF628 WILD-TYPE | 38 | 11 | 23

'DSPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Chi-square test), Q value = 1

Table S537. Gene #68: 'DSPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
DSPP MUTATED | 5 | 4 | 3 | 1 | 0
DSPP WILD-TYPE | 27 | 19 | 12 | 9 | 9

'DSPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Chi-square test), Q value = 1

Table S538. Gene #68: 'DSPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
DSPP MUTATED | 1 | 4 | 2 | 3 | 1
DSPP WILD-TYPE | 17 | 7 | 19 | 15 | 10

'DSPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S539. Gene #68: 'DSPP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
DSPP MUTATED | 3 | 3 | 2 | 3
DSPP WILD-TYPE | 21 | 11 | 15 | 20

'DSPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S540. Gene #68: 'DSPP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
DSPP MUTATED | 4 | 4 | 3
DSPP WILD-TYPE | 19 | 29 | 19

'DSPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S541. Gene #68: 'DSPP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
DSPP MUTATED | 5 | 3 | 3
DSPP WILD-TYPE | 32 | 13 | 23

'DSPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S542. Gene #68: 'DSPP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
DSPP MUTATED | 4 | 0 | 7
DSPP WILD-TYPE | 22 | 10 | 36

'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S543. Gene #68: 'DSPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
DSPP MUTATED | 5 | 4 | 2
DSPP WILD-TYPE | 33 | 14 | 21

'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S544. Gene #68: 'DSPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
DSPP MUTATED | 7 | 0 | 4
DSPP WILD-TYPE | 34 | 11 | 23

'ASPDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Chi-square test), Q value = 1

Table S545. Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ASPDH MUTATED | 7 | 4 | 4 | 4 | 0
ASPDH WILD-TYPE | 25 | 19 | 11 | 6 | 9

'ASPDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Chi-square test), Q value = 1

Table S546. Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ASPDH MUTATED | 3 | 3 | 6 | 2 | 2
ASPDH WILD-TYPE | 15 | 8 | 15 | 16 | 9

'ASPDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 1

Table S547. Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ASPDH MUTATED | 6 | 3 | 6 | 1
ASPDH WILD-TYPE | 18 | 11 | 11 | 22

'ASPDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0874 (Fisher's exact test), Q value = 1

Table S548. Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ASPDH MUTATED | 6 | 3 | 7
ASPDH WILD-TYPE | 17 | 30 | 15

'ASPDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S549. Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ASPDH MUTATED | 11 | 2 | 3
ASPDH WILD-TYPE | 26 | 14 | 23

'ASPDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00171 (Fisher's exact test), Q value = 1

Table S550. Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ASPDH MUTATED | 0 | 3 | 13
ASPDH WILD-TYPE | 26 | 7 | 30

Figure S36. Get High-res Image Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0539 (Fisher's exact test), Q value = 1

Table S551. Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ASPDH MUTATED | 12 | 1 | 3
ASPDH WILD-TYPE | 26 | 17 | 20

'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 1

Table S552. Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ASPDH MUTATED | 13 | 3 | 0
ASPDH WILD-TYPE | 28 | 8 | 27

Figure S37. Get High-res Image Gene #69: 'ASPDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CSGALNACT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Chi-square test), Q value = 1

Table S553. Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CSGALNACT2 MUTATED | 1 | 3 | 0 | 0 | 1
CSGALNACT2 WILD-TYPE | 31 | 20 | 15 | 10 | 8

'CSGALNACT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0371 (Chi-square test), Q value = 1

Table S554. Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CSGALNACT2 MUTATED | 1 | 0 | 1 | 0 | 3
CSGALNACT2 WILD-TYPE | 17 | 11 | 20 | 18 | 8

Figure S38. Get High-res Image Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S555. Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CSGALNACT2 MUTATED | 1 | 0 | 2 | 2
CSGALNACT2 WILD-TYPE | 23 | 14 | 15 | 21

'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S556. Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CSGALNACT2 MUTATED | 1 | 4 | 0
CSGALNACT2 WILD-TYPE | 22 | 29 | 22

'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S557. Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CSGALNACT2 MUTATED | 1 | 0 | 4
CSGALNACT2 WILD-TYPE | 36 | 16 | 22

'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S558. Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CSGALNACT2 MUTATED | 3 | 1 | 1
CSGALNACT2 WILD-TYPE | 23 | 9 | 42

'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S559. Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CSGALNACT2 MUTATED | 1 | 1 | 3
CSGALNACT2 WILD-TYPE | 37 | 17 | 20

'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S560. Gene #70: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CSGALNACT2 MUTATED | 1 | 1 | 3
CSGALNACT2 WILD-TYPE | 40 | 10 | 24

'TPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Chi-square test), Q value = 1

Table S561. Gene #71: 'TPO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TPO MUTATED | 11 | 3 | 2 | 2 | 3
TPO WILD-TYPE | 21 | 20 | 13 | 8 | 6

'TPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Chi-square test), Q value = 1

Table S562. Gene #71: 'TPO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TPO MUTATED | 5 | 5 | 1 | 5 | 2
TPO WILD-TYPE | 13 | 6 | 20 | 13 | 9

'TPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S563. Gene #71: 'TPO MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TPO MUTATED | 9 | 3 | 2 | 4
TPO WILD-TYPE | 15 | 11 | 15 | 19

'TPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S564. Gene #71: 'TPO MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TPO MUTATED | 8 | 7 | 3
TPO WILD-TYPE | 15 | 26 | 19

'TPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S565. Gene #71: 'TPO MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TPO MUTATED | 8 | 6 | 4
TPO WILD-TYPE | 29 | 10 | 22

'TPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S566. Gene #71: 'TPO MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TPO MUTATED | 6 | 2 | 10
TPO WILD-TYPE | 20 | 8 | 33

'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S567. Gene #71: 'TPO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TPO MUTATED | 8 | 7 | 3
TPO WILD-TYPE | 30 | 11 | 20

'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S568. Gene #71: 'TPO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TPO MUTATED | 8 | 3 | 7
TPO WILD-TYPE | 33 | 8 | 20

'KRTAP4-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.262 (Chi-square test), Q value = 1

Table S569. Gene #72: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KRTAP4-5 MUTATED | 2 | 4 | 0 | 0 | 1
KRTAP4-5 WILD-TYPE | 30 | 19 | 15 | 10 | 8

'KRTAP4-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Chi-square test), Q value = 1

Table S570. Gene #72: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
KRTAP4-5 MUTATED | 1 | 3 | 1 | 1 | 0
KRTAP4-5 WILD-TYPE | 17 | 8 | 20 | 17 | 11

'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S571. Gene #72: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
KRTAP4-5 MUTATED | 2 | 0 | 2 | 2
KRTAP4-5 WILD-TYPE | 22 | 14 | 15 | 21

'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S572. Gene #72: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
KRTAP4-5 MUTATED | 2 | 3 | 1
KRTAP4-5 WILD-TYPE | 21 | 30 | 21

'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S573. Gene #72: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
KRTAP4-5 MUTATED | 2 | 1 | 3
KRTAP4-5 WILD-TYPE | 35 | 15 | 23

'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S574. Gene #72: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
KRTAP4-5 MUTATED | 1 | 2 | 3
KRTAP4-5 WILD-TYPE | 25 | 8 | 40

'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S575. Gene #72: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
KRTAP4-5 MUTATED | 2 | 1 | 3
KRTAP4-5 WILD-TYPE | 36 | 17 | 20

'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S576. Gene #72: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
KRTAP4-5 MUTATED | 3 | 2 | 1
KRTAP4-5 WILD-TYPE | 38 | 9 | 26

'GLTSCR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Chi-square test), Q value = 1

Table S577. Gene #73: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
GLTSCR2 MUTATED | 5 | 1 | 1 | 1 | 0
GLTSCR2 WILD-TYPE | 27 | 22 | 14 | 9 | 9

'GLTSCR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Chi-square test), Q value = 1

Table S578. Gene #73: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
GLTSCR2 MUTATED | 4 | 0 | 2 | 1 | 0
GLTSCR2 WILD-TYPE | 14 | 11 | 19 | 17 | 11

'GLTSCR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S579. Gene #73: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
GLTSCR2 MUTATED | 4 | 1 | 2 | 0
GLTSCR2 WILD-TYPE | 20 | 13 | 15 | 23

'GLTSCR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S580. Gene #73: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
GLTSCR2 MUTATED | 3 | 2 | 2
GLTSCR2 WILD-TYPE | 20 | 31 | 20

'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S581. Gene #73: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
GLTSCR2 MUTATED | 2 | 3 | 2
GLTSCR2 WILD-TYPE | 35 | 13 | 24

'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S582. Gene #73: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
GLTSCR2 MUTATED | 4 | 1 | 2
GLTSCR2 WILD-TYPE | 22 | 9 | 41

'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 1

Table S583. Gene #73: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
GLTSCR2 MUTATED | 2 | 4 | 1
GLTSCR2 WILD-TYPE | 36 | 14 | 22

'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S584. Gene #73: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
GLTSCR2 MUTATED | 2 | 1 | 4
GLTSCR2 WILD-TYPE | 39 | 10 | 23

'PANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.725 (Chi-square test), Q value = 1

Table S585. Gene #74: 'PANK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PANK2 MUTATED | 7 | 2 | 2 | 2 | 2
PANK2 WILD-TYPE | 25 | 21 | 13 | 8 | 7

'PANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Chi-square test), Q value = 1

Table S586. Gene #74: 'PANK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PANK2 MUTATED | 3 | 1 | 2 | 4 | 2
PANK2 WILD-TYPE | 15 | 10 | 19 | 14 | 9

'PANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S587. Gene #74: 'PANK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PANK2 MUTATED | 5 | 1 | 2 | 4
PANK2 WILD-TYPE | 19 | 13 | 15 | 19

'PANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S588. Gene #74: 'PANK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PANK2 MUTATED | 4 | 6 | 2
PANK2 WILD-TYPE | 19 | 27 | 20

'PANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S589. Gene #74: 'PANK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PANK2 MUTATED | 6 | 2 | 4
PANK2 WILD-TYPE | 31 | 14 | 22

'PANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S590. Gene #74: 'PANK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PANK2 MUTATED | 3 | 2 | 7
PANK2 WILD-TYPE | 23 | 8 | 36

'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S591. Gene #74: 'PANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PANK2 MUTATED | 6 | 3 | 3
PANK2 WILD-TYPE | 32 | 15 | 20

'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S592. Gene #74: 'PANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PANK2 MUTATED | 5 | 3 | 4
PANK2 WILD-TYPE | 36 | 8 | 23

'RNF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Chi-square test), Q value = 1

Table S593. Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RNF39 MUTATED | 2 | 1 | 2 | 2 | 0
RNF39 WILD-TYPE | 30 | 22 | 13 | 8 | 9

'RNF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Chi-square test), Q value = 1

Table S594. Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RNF39 MUTATED | 1 | 2 | 4 | 0 | 0
RNF39 WILD-TYPE | 17 | 9 | 17 | 18 | 11

'RNF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 1

Table S595. Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RNF39 MUTATED | 1 | 2 | 4 | 0
RNF39 WILD-TYPE | 23 | 12 | 13 | 23

Figure S39. Get High-res Image Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RNF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00798 (Fisher's exact test), Q value = 1

Table S596. Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RNF39 MUTATED | 2 | 0 | 5
RNF39 WILD-TYPE | 21 | 33 | 17

Figure S40. Get High-res Image Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'RNF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 1

Table S597. Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RNF39 MUTATED | 4 | 3 | 0
RNF39 WILD-TYPE | 33 | 13 | 26

'RNF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S598. Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RNF39 MUTATED | 2 | 0 | 5
RNF39 WILD-TYPE | 24 | 10 | 38

'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S599. Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RNF39 MUTATED | 4 | 3 | 0
RNF39 WILD-TYPE | 34 | 15 | 23

'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S600. Gene #75: 'RNF39 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RNF39 MUTATED | 5 | 0 | 2
RNF39 WILD-TYPE | 36 | 11 | 25

'MAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Chi-square test), Q value = 1

Table S601. Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
MAL2 MUTATED | 7 | 8 | 6 | 1 | 1
MAL2 WILD-TYPE | 25 | 15 | 9 | 9 | 8

'MAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Chi-square test), Q value = 1

Table S602. Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
MAL2 MUTATED | 3 | 3 | 3 | 5 | 3
MAL2 WILD-TYPE | 15 | 8 | 18 | 13 | 8

'MAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 1

Table S603. Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
MAL2 MUTATED | 5 | 6 | 0 | 6
MAL2 WILD-TYPE | 19 | 8 | 17 | 17

Figure S41. Get High-res Image Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'MAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S604. Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
MAL2 MUTATED | 5 | 7 | 5
MAL2 WILD-TYPE | 18 | 26 | 17

'MAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S605. Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
MAL2 MUTATED | 6 | 5 | 6
MAL2 WILD-TYPE | 31 | 11 | 20

'MAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S606. Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
MAL2 MUTATED | 7 | 2 | 8
MAL2 WILD-TYPE | 19 | 8 | 35

'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S607. Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
MAL2 MUTATED | 7 | 4 | 6
MAL2 WILD-TYPE | 31 | 14 | 17

'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S608. Gene #76: 'MAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
MAL2 MUTATED | 8 | 2 | 7
MAL2 WILD-TYPE | 33 | 9 | 20

'ZAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Chi-square test), Q value = 1

Table S609. Gene #77: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ZAR1 MUTATED | 6 | 5 | 1 | 3 | 4
ZAR1 WILD-TYPE | 26 | 18 | 14 | 7 | 5

'ZAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Chi-square test), Q value = 1

Table S610. Gene #77: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ZAR1 MUTATED | 3 | 3 | 3 | 4 | 4
ZAR1 WILD-TYPE | 15 | 8 | 18 | 14 | 7

'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S611. Gene #77: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ZAR1 MUTATED | 6 | 1 | 4 | 6
ZAR1 WILD-TYPE | 18 | 13 | 13 | 17

'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S612. Gene #77: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ZAR1 MUTATED | 6 | 8 | 3
ZAR1 WILD-TYPE | 17 | 25 | 19

'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S613. Gene #77: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ZAR1 MUTATED | 9 | 1 | 7
ZAR1 WILD-TYPE | 28 | 15 | 19

'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S614. Gene #77: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ZAR1 MUTATED | 6 | 2 | 9
ZAR1 WILD-TYPE | 20 | 8 | 34

'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S615. Gene #77: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ZAR1 MUTATED | 9 | 2 | 6
ZAR1 WILD-TYPE | 29 | 16 | 17

'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S616. Gene #77: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ZAR1 MUTATED | 8 | 3 | 6
ZAR1 WILD-TYPE | 33 | 8 | 21

'C16ORF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Chi-square test), Q value = 1

Table S617. Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
C16ORF3 MUTATED | 3 | 3 | 0 | 1 | 1
C16ORF3 WILD-TYPE | 29 | 20 | 15 | 9 | 8

'C16ORF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00275 (Chi-square test), Q value = 1

Table S618. Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
C16ORF3 MUTATED | 0 | 4 | 1 | 0 | 1
C16ORF3 WILD-TYPE | 18 | 7 | 20 | 18 | 10

Figure S42. Get High-res Image Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S619. Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
C16ORF3 MUTATED | 1 | 1 | 3 | 1
C16ORF3 WILD-TYPE | 23 | 13 | 14 | 22

'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S620. Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
C16ORF3 MUTATED | 2 | 2 | 2
C16ORF3 WILD-TYPE | 21 | 31 | 20

'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S621. Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
C16ORF3 MUTATED | 2 | 2 | 2
C16ORF3 WILD-TYPE | 35 | 14 | 24

'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S622. Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
C16ORF3 MUTATED | 2 | 1 | 3
C16ORF3 WILD-TYPE | 24 | 9 | 40

'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S623. Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
C16ORF3 MUTATED | 2 | 2 | 2
C16ORF3 WILD-TYPE | 36 | 16 | 21

'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S624. Gene #78: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
C16ORF3 MUTATED | 3 | 1 | 2
C16ORF3 WILD-TYPE | 38 | 10 | 25

'KRTAP5-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.505 (Chi-square test), Q value = 1

Table S625. Gene #79: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KRTAP5-5 MUTATED | 3 | 1 | 1 | 2 | 0
KRTAP5-5 WILD-TYPE | 29 | 22 | 14 | 8 | 9

'KRTAP5-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.564 (Chi-square test), Q value = 1

Table S626. Gene #79: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
KRTAP5-5 MUTATED | 2 | 0 | 1 | 2 | 0
KRTAP5-5 WILD-TYPE | 16 | 11 | 20 | 16 | 11

'KRTAP5-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S627. Gene #79: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
KRTAP5-5 MUTATED | 3 | 1 | 0 | 1
KRTAP5-5 WILD-TYPE | 21 | 13 | 17 | 22

'KRTAP5-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S628. Gene #79: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
KRTAP5-5 MUTATED | 2 | 2 | 1
KRTAP5-5 WILD-TYPE | 21 | 31 | 21

'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S629. Gene #79: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
KRTAP5-5 MUTATED | 2 | 2 | 1
KRTAP5-5 WILD-TYPE | 35 | 14 | 25

'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S630. Gene #79: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
KRTAP5-5 MUTATED | 2 | 1 | 2
KRTAP5-5 WILD-TYPE | 24 | 9 | 41

'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S631. Gene #79: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
KRTAP5-5 MUTATED | 2 | 2 | 1
KRTAP5-5 WILD-TYPE | 36 | 16 | 22

'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S632. Gene #79: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
KRTAP5-5 MUTATED | 2 | 1 | 2
KRTAP5-5 WILD-TYPE | 39 | 10 | 25

'CRIPAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.378 (Chi-square test), Q value = 1

Table S633. Gene #80: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CRIPAK MUTATED | 4 | 5 | 2 | 4 | 2
CRIPAK WILD-TYPE | 28 | 18 | 13 | 6 | 7

'CRIPAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.566 (Chi-square test), Q value = 1

Table S634. Gene #80: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CRIPAK MUTATED | 3 | 2 | 4 | 2 | 4
CRIPAK WILD-TYPE | 15 | 9 | 17 | 16 | 7

'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S635. Gene #80: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CRIPAK MUTATED | 5 | 0 | 5 | 5
CRIPAK WILD-TYPE | 19 | 14 | 12 | 18

'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S636. Gene #80: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CRIPAK MUTATED | 5 | 7 | 3
CRIPAK WILD-TYPE | 18 | 26 | 19

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S637. Gene #80: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CRIPAK MUTATED | 8 | 2 | 5
CRIPAK WILD-TYPE | 29 | 14 | 21

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S638. Gene #80: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CRIPAK MUTATED | 5 | 2 | 8
CRIPAK WILD-TYPE | 21 | 8 | 35

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S639. Gene #80: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CRIPAK MUTATED | 8 | 2 | 5
CRIPAK WILD-TYPE | 30 | 16 | 18

'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S640. Gene #80: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CRIPAK MUTATED | 8 | 2 | 5
CRIPAK WILD-TYPE | 33 | 9 | 22

'C14ORF180 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.626 (Chi-square test), Q value = 1

Table S641. Gene #81: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
C14ORF180 MUTATED | 2 | 0 | 1 | 1 | 0
C14ORF180 WILD-TYPE | 30 | 23 | 14 | 9 | 9

'C14ORF180 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0794 (Chi-square test), Q value = 1

Table S642. Gene #81: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
C14ORF180 MUTATED | 0 | 0 | 0 | 1 | 2
C14ORF180 WILD-TYPE | 18 | 11 | 21 | 17 | 9

'C14ORF180 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S643. Gene #81: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
C14ORF180 MUTATED | 0 | 1 | 1 | 1
C14ORF180 WILD-TYPE | 24 | 13 | 16 | 22

'C14ORF180 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S644. Gene #81: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
C14ORF180 MUTATED | 0 | 2 | 1
C14ORF180 WILD-TYPE | 23 | 31 | 21

'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S645. Gene #81: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
C14ORF180 MUTATED | 3 | 0 | 0
C14ORF180 WILD-TYPE | 34 | 16 | 26

'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S646. Gene #81: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
C14ORF180 MUTATED | 0 | 0 | 3
C14ORF180 WILD-TYPE | 26 | 10 | 40

'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S647. Gene #81: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
C14ORF180 MUTATED | 3 | 0 | 0
C14ORF180 WILD-TYPE | 35 | 18 | 23

'C14ORF180 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S648. Gene #81: 'C14ORF180 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
C14ORF180 MUTATED | 2 | 1 | 0
C14ORF180 WILD-TYPE | 39 | 10 | 27

'SPERT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.463 (Chi-square test), Q value = 1

Table S649. Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
SPERT MUTATED | 1 | 2 | 2 | 0 | 0
SPERT WILD-TYPE | 31 | 21 | 13 | 10 | 9

'SPERT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Chi-square test), Q value = 1

Table S650. Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
SPERT MUTATED | 0 | 1 | 2 | 1 | 0
SPERT WILD-TYPE | 18 | 10 | 19 | 17 | 11

'SPERT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 1

Table S651. Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
SPERT MUTATED | 0 | 1 | 3 | 0
SPERT WILD-TYPE | 24 | 13 | 14 | 23

Figure S43. Get High-res Image Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SPERT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S652. Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
SPERT MUTATED | 0 | 1 | 3
SPERT WILD-TYPE | 23 | 32 | 19

'SPERT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S653. Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
SPERT MUTATED | 4 | 0 | 0
SPERT WILD-TYPE | 33 | 16 | 26

'SPERT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S654. Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
SPERT MUTATED | 0 | 0 | 4
SPERT WILD-TYPE | 26 | 10 | 39

'SPERT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S655. Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
SPERT MUTATED | 4 | 0 | 0
SPERT WILD-TYPE | 34 | 18 | 23

'SPERT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S656. Gene #82: 'SPERT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
SPERT MUTATED | 4 | 0 | 0
SPERT WILD-TYPE | 37 | 11 | 27

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0173 (Chi-square test), Q value = 1

Table S657. Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TP53 MUTATED | 5 | 1 | 5 | 5 | 1
TP53 WILD-TYPE | 27 | 22 | 10 | 5 | 8

Figure S44. Get High-res Image Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Chi-square test), Q value = 1

Table S658. Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TP53 MUTATED | 3 | 3 | 6 | 2 | 1
TP53 WILD-TYPE | 15 | 8 | 15 | 16 | 10

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00344 (Fisher's exact test), Q value = 1

Table S659. Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TP53 MUTATED | 4 | 4 | 7 | 0
TP53 WILD-TYPE | 20 | 10 | 10 | 23

Figure S45. Get High-res Image Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S660. Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TP53 MUTATED | 5 | 3 | 7
TP53 WILD-TYPE | 18 | 30 | 15

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00268 (Fisher's exact test), Q value = 1

Table S661. Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TP53 MUTATED | 10 | 5 | 0
TP53 WILD-TYPE | 27 | 11 | 26

Figure S46. Get High-res Image Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 1

Table S662. Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TP53 MUTATED | 3 | 0 | 12
TP53 WILD-TYPE | 23 | 10 | 31

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 1

Table S663. Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TP53 MUTATED | 10 | 5 | 0
TP53 WILD-TYPE | 28 | 13 | 23

Figure S47. Get High-res Image Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 1

Table S664. Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TP53 MUTATED | 12 | 0 | 3
TP53 WILD-TYPE | 29 | 11 | 24

Figure S48. Get High-res Image Gene #83: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'B3GNT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Chi-square test), Q value = 1

Table S665. Gene #84: 'B3GNT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
B3GNT6 MUTATED | 3 | 0 | 0 | 1 | 0
B3GNT6 WILD-TYPE | 29 | 23 | 15 | 9 | 9

'BHLHE22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0312 (Chi-square test), Q value = 1

Table S666. Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
BHLHE22 MUTATED | 2 | 3 | 5 | 0 | 0
BHLHE22 WILD-TYPE | 30 | 20 | 10 | 10 | 9

Figure S49. Get High-res Image Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BHLHE22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.27 (Chi-square test), Q value = 1

Table S667. Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
BHLHE22 MUTATED | 0 | 3 | 3 | 3 | 1
BHLHE22 WILD-TYPE | 18 | 8 | 18 | 15 | 10

'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00963 (Fisher's exact test), Q value = 1

Table S668. Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
BHLHE22 MUTATED | 0 | 5 | 2 | 3
BHLHE22 WILD-TYPE | 24 | 9 | 15 | 20

Figure S50. Get High-res Image Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S669. Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
BHLHE22 MUTATED | 2 | 3 | 5
BHLHE22 WILD-TYPE | 21 | 30 | 17

'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S670. Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
BHLHE22 MUTATED | 4 | 3 | 3
BHLHE22 WILD-TYPE | 33 | 13 | 23

'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S671. Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
BHLHE22 MUTATED | 4 | 1 | 5
BHLHE22 WILD-TYPE | 22 | 9 | 38

'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S672. Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
BHLHE22 MUTATED | 4 | 3 | 3
BHLHE22 WILD-TYPE | 34 | 15 | 20

'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S673. Gene #85: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
BHLHE22 MUTATED | 5 | 1 | 4
BHLHE22 WILD-TYPE | 36 | 10 | 23

'RGMB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Chi-square test), Q value = 1

Table S674. Gene #86: 'RGMB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RGMB MUTATED | 4 | 2 | 4 | 0 | 0
RGMB WILD-TYPE | 28 | 21 | 11 | 10 | 9

'RGMB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.831 (Chi-square test), Q value = 1

Table S675. Gene #86: 'RGMB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RGMB MUTATED | 2 | 0 | 2 | 1 | 1
RGMB WILD-TYPE | 16 | 11 | 19 | 17 | 10

'RGMB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S676. Gene #86: 'RGMB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RGMB MUTATED | 2 | 1 | 2 | 1
RGMB WILD-TYPE | 22 | 13 | 15 | 22

'RGMB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S677. Gene #86: 'RGMB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RGMB MUTATED | 2 | 1 | 3
RGMB WILD-TYPE | 21 | 32 | 19

'RGMB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S678. Gene #86: 'RGMB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RGMB MUTATED | 3 | 2 | 1
RGMB WILD-TYPE | 34 | 14 | 25

'RGMB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S679. Gene #86: 'RGMB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RGMB MUTATED | 2 | 1 | 3
RGMB WILD-TYPE | 24 | 9 | 40

'RGMB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S680. Gene #86: 'RGMB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RGMB MUTATED | 3 | 2 | 1
RGMB WILD-TYPE | 35 | 16 | 22

'RGMB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S681. Gene #86: 'RGMB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RGMB MUTATED | 3 | 1 | 2
RGMB WILD-TYPE | 38 | 10 | 25

'APOE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0848 (Chi-square test), Q value = 1

Table S682. Gene #87: 'APOE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
APOE MUTATED | 1 | 3 | 1 | 3 | 0
APOE WILD-TYPE | 31 | 20 | 14 | 7 | 9

'APOE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Chi-square test), Q value = 1

Table S683. Gene #87: 'APOE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
APOE MUTATED | 1 | 0 | 3 | 3 | 0
APOE WILD-TYPE | 17 | 11 | 18 | 15 | 11

'APOE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S684. Gene #87: 'APOE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
APOE MUTATED | 2 | 0 | 4 | 1
APOE WILD-TYPE | 22 | 14 | 13 | 22

'APOE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S685. Gene #87: 'APOE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
APOE MUTATED | 1 | 3 | 3
APOE WILD-TYPE | 22 | 30 | 19

'APOE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S686. Gene #87: 'APOE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
APOE MUTATED | 2 | 3 | 2
APOE WILD-TYPE | 35 | 13 | 24

'APOE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S687. Gene #87: 'APOE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
APOE MUTATED | 4 | 0 | 3
APOE WILD-TYPE | 22 | 10 | 40

'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 1

Table S688. Gene #87: 'APOE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
APOE MUTATED | 2 | 4 | 1
APOE WILD-TYPE | 36 | 14 | 22

'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S689. Gene #87: 'APOE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
APOE MUTATED | 3 | 0 | 4
APOE WILD-TYPE | 38 | 11 | 23

'PCGF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.497 (Chi-square test), Q value = 1

Table S690. Gene #88: 'PCGF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PCGF6 MUTATED | 3 | 1 | 0 | 0 | 0
PCGF6 WILD-TYPE | 29 | 22 | 15 | 10 | 9

'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Chi-square test), Q value = 1

Table S691. Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
MEN1 MUTATED | 1 | 1 | 2 | 2 | 1
MEN1 WILD-TYPE | 31 | 22 | 13 | 8 | 8

'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0105 (Chi-square test), Q value = 1

Table S692. Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
MEN1 MUTATED | 0 | 3 | 5 | 0 | 0
MEN1 WILD-TYPE | 18 | 8 | 16 | 18 | 11

Figure S51. Get High-res Image Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S693. Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
MEN1 MUTATED | 1 | 2 | 4 | 1
MEN1 WILD-TYPE | 23 | 12 | 13 | 22

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 1

Table S694. Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
MEN1 MUTATED | 1 | 1 | 6
MEN1 WILD-TYPE | 22 | 32 | 16

Figure S52. Get High-res Image Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S695. Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
MEN1 MUTATED | 5 | 2 | 1
MEN1 WILD-TYPE | 32 | 14 | 25

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S696. Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
MEN1 MUTATED | 1 | 1 | 6
MEN1 WILD-TYPE | 25 | 9 | 37

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S697. Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
MEN1 MUTATED | 5 | 2 | 1
MEN1 WILD-TYPE | 33 | 16 | 22

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S698. Gene #89: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
MEN1 MUTATED | 6 | 1 | 1
MEN1 WILD-TYPE | 35 | 10 | 26

'LZTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Chi-square test), Q value = 1

Table S699. Gene #90: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
LZTR1 MUTATED | 5 | 0 | 1 | 1 | 0
LZTR1 WILD-TYPE | 27 | 23 | 14 | 9 | 9

'LZTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Chi-square test), Q value = 1

Table S700. Gene #90: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
LZTR1 MUTATED | 3 | 0 | 1 | 1 | 0
LZTR1 WILD-TYPE | 15 | 11 | 20 | 17 | 11

'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S701. Gene #90: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
LZTR1 MUTATED | 4 | 1 | 0 | 0
LZTR1 WILD-TYPE | 20 | 13 | 17 | 23

'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S702. Gene #90: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
LZTR1 MUTATED | 3 | 1 | 1
LZTR1 WILD-TYPE | 20 | 32 | 21

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S703. Gene #90: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
LZTR1 MUTATED | 4 | 1 | 0
LZTR1 WILD-TYPE | 33 | 15 | 26

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S704. Gene #90: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
LZTR1 MUTATED | 0 | 0 | 5
LZTR1 WILD-TYPE | 26 | 10 | 38

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S705. Gene #90: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
LZTR1 MUTATED | 4 | 1 | 0
LZTR1 WILD-TYPE | 34 | 17 | 23

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S706. Gene #90: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
LZTR1 MUTATED | 4 | 0 | 1
LZTR1 WILD-TYPE | 37 | 11 | 26

'RASIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Chi-square test), Q value = 1

Table S707. Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RASIP1 MUTATED | 4 | 2 | 4 | 0 | 1
RASIP1 WILD-TYPE | 28 | 21 | 11 | 10 | 8

'RASIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Chi-square test), Q value = 1

Table S708. Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RASIP1 MUTATED | 3 | 2 | 4 | 1 | 1
RASIP1 WILD-TYPE | 15 | 9 | 17 | 17 | 10

'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 1

Table S709. Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RASIP1 MUTATED | 4 | 4 | 3 | 0
RASIP1 WILD-TYPE | 20 | 10 | 14 | 23

Figure S53. Get High-res Image Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S710. Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RASIP1 MUTATED | 4 | 2 | 5
RASIP1 WILD-TYPE | 19 | 31 | 17

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 1

Table S711. Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RASIP1 MUTATED | 4 | 6 | 1
RASIP1 WILD-TYPE | 33 | 10 | 25

Figure S54. Get High-res Image Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S712. Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RASIP1 MUTATED | 6 | 0 | 5
RASIP1 WILD-TYPE | 20 | 10 | 38

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 1

Table S713. Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RASIP1 MUTATED | 4 | 7 | 0
RASIP1 WILD-TYPE | 34 | 11 | 23

Figure S55. Get High-res Image Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S714. Gene #91: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RASIP1 MUTATED | 5 | 0 | 6
RASIP1 WILD-TYPE | 36 | 11 | 21

'ZC3H12D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0274 (Chi-square test), Q value = 1

Table S715. Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ZC3H12D MUTATED | 2 | 0 | 1 | 3 | 0
ZC3H12D WILD-TYPE | 30 | 23 | 14 | 7 | 9

Figure S56. Get High-res Image Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H12D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Chi-square test), Q value = 1

Table S716. Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ZC3H12D MUTATED | 1 | 0 | 2 | 1 | 1
ZC3H12D WILD-TYPE | 17 | 11 | 19 | 17 | 10

'ZC3H12D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S717. Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ZC3H12D MUTATED | 1 | 1 | 2 | 1
ZC3H12D WILD-TYPE | 23 | 13 | 15 | 22

'ZC3H12D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S718. Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ZC3H12D MUTATED | 1 | 1 | 3
ZC3H12D WILD-TYPE | 22 | 32 | 19

'ZC3H12D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S719. Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ZC3H12D MUTATED | 4 | 0 | 1
ZC3H12D WILD-TYPE | 33 | 16 | 25

'ZC3H12D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S720. Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ZC3H12D MUTATED | 0 | 1 | 4
ZC3H12D WILD-TYPE | 26 | 9 | 39

'ZC3H12D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S721. Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ZC3H12D MUTATED | 4 | 0 | 1
ZC3H12D WILD-TYPE | 34 | 18 | 22

'ZC3H12D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 1

Table S722. Gene #92: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ZC3H12D MUTATED | 3 | 2 | 0
ZC3H12D WILD-TYPE | 38 | 9 | 27

'TSC22D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.372 (Chi-square test), Q value = 1

Table S723. Gene #93: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
TSC22D2 MUTATED | 4 | 1 | 2 | 3 | 1
TSC22D2 WILD-TYPE | 28 | 22 | 13 | 7 | 8

'TSC22D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Chi-square test), Q value = 1

Table S724. Gene #93: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
TSC22D2 MUTATED | 2 | 0 | 5 | 1 | 2
TSC22D2 WILD-TYPE | 16 | 11 | 16 | 17 | 9

'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S725. Gene #93: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
TSC22D2 MUTATED | 3 | 1 | 3 | 3
TSC22D2 WILD-TYPE | 21 | 13 | 14 | 20

'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S726. Gene #93: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
TSC22D2 MUTATED | 2 | 4 | 4
TSC22D2 WILD-TYPE | 21 | 29 | 18

'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S727. Gene #93: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
TSC22D2 MUTATED | 5 | 2 | 3
TSC22D2 WILD-TYPE | 32 | 14 | 23

'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S728. Gene #93: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
TSC22D2 MUTATED | 3 | 0 | 7
TSC22D2 WILD-TYPE | 23 | 10 | 36

'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S729. Gene #93: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
TSC22D2 MUTATED | 5 | 2 | 3
TSC22D2 WILD-TYPE | 33 | 16 | 20

'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S730. Gene #93: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
TSC22D2 MUTATED | 6 | 0 | 4
TSC22D2 WILD-TYPE | 35 | 11 | 23

'COQ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.081 (Chi-square test), Q value = 1

Table S731. Gene #94: 'COQ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
COQ2 MUTATED | 1 | 1 | 1 | 3 | 1
COQ2 WILD-TYPE | 31 | 22 | 14 | 7 | 8

'COQ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Chi-square test), Q value = 1

Table S732. Gene #94: 'COQ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
COQ2 MUTATED | 1 | 1 | 1 | 1 | 2
COQ2 WILD-TYPE | 17 | 10 | 20 | 17 | 9

'COQ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S733. Gene #94: 'COQ2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
COQ2 MUTATED | 1 | 2 | 2 | 1
COQ2 WILD-TYPE | 23 | 12 | 15 | 22

'COQ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S734. Gene #94: 'COQ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
COQ2 MUTATED | 1 | 2 | 3
COQ2 WILD-TYPE | 22 | 31 | 19

'COQ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S735. Gene #94: 'COQ2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
COQ2 MUTATED | 3 | 2 | 1
COQ2 WILD-TYPE | 34 | 14 | 25

'COQ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S736. Gene #94: 'COQ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
COQ2 MUTATED | 3 | 0 | 3
COQ2 WILD-TYPE | 23 | 10 | 40

'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S737. Gene #94: 'COQ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
COQ2 MUTATED | 3 | 2 | 1
COQ2 WILD-TYPE | 35 | 16 | 22

'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S738. Gene #94: 'COQ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
COQ2 MUTATED | 3 | 0 | 3
COQ2 WILD-TYPE | 38 | 11 | 24

'DLEU7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.218 (Chi-square test), Q value = 1

Table S739. Gene #95: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
DLEU7 MUTATED | 4 | 0 | 2 | 0 | 0
DLEU7 WILD-TYPE | 28 | 23 | 13 | 10 | 9

'DLEU7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.788 (Chi-square test), Q value = 1

Table S740. Gene #95: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
DLEU7 MUTATED | 1 | 1 | 1 | 0 | 1
DLEU7 WILD-TYPE | 17 | 10 | 20 | 18 | 10

'DLEU7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S741. Gene #95: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
DLEU7 MUTATED | 2 | 1 | 1 | 0
DLEU7 WILD-TYPE | 22 | 13 | 16 | 23

'DLEU7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S742. Gene #95: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
DLEU7 MUTATED | 2 | 0 | 2
DLEU7 WILD-TYPE | 21 | 33 | 20

'DLEU7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S743. Gene #95: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
DLEU7 MUTATED | 3 | 1 | 0
DLEU7 WILD-TYPE | 34 | 15 | 26

'DLEU7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S744. Gene #95: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
DLEU7 MUTATED | 1 | 0 | 3
DLEU7 WILD-TYPE | 25 | 10 | 40

'DLEU7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S745. Gene #95: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
DLEU7 MUTATED | 3 | 1 | 0
DLEU7 WILD-TYPE | 35 | 17 | 23

'DLEU7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S746. Gene #95: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
DLEU7 MUTATED | 3 | 0 | 1
DLEU7 WILD-TYPE | 38 | 11 | 26

'FAM46A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.709 (Chi-square test), Q value = 1

Table S747. Gene #96: 'FAM46A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
FAM46A MUTATED | 1 | 2 | 1 | 0 | 0
FAM46A WILD-TYPE | 31 | 21 | 14 | 10 | 9

'FAM46A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.874 (Chi-square test), Q value = 1

Table S748. Gene #96: 'FAM46A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
FAM46A MUTATED | 1 | 0 | 1 | 1 | 0
FAM46A WILD-TYPE | 17 | 11 | 20 | 17 | 11

'FAM46A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S749. Gene #96: 'FAM46A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
FAM46A MUTATED | 1 | 1 | 0 | 1
FAM46A WILD-TYPE | 23 | 13 | 17 | 22

'FAM46A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S750. Gene #96: 'FAM46A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
FAM46A MUTATED | 1 | 1 | 1
FAM46A WILD-TYPE | 22 | 32 | 21

'FAM46A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S751. Gene #96: 'FAM46A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
FAM46A MUTATED | 2 | 0 | 1
FAM46A WILD-TYPE | 35 | 16 | 25

'FAM46A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S752. Gene #96: 'FAM46A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
FAM46A MUTATED | 1 | 0 | 2
FAM46A WILD-TYPE | 25 | 10 | 41

'FAM46A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753. Gene #96: 'FAM46A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
FAM46A MUTATED | 2 | 0 | 1
FAM46A WILD-TYPE | 36 | 18 | 22

'FAM46A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S754. Gene #96: 'FAM46A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
FAM46A MUTATED | 2 | 0 | 1
FAM46A WILD-TYPE | 39 | 11 | 26

'JMJD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.634 (Chi-square test), Q value = 1

Table S755. Gene #97: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
JMJD4 MUTATED | 2 | 2 | 2 | 0 | 0
JMJD4 WILD-TYPE | 30 | 21 | 13 | 10 | 9

'JMJD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.177 (Chi-square test), Q value = 1

Table S756. Gene #97: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
JMJD4 MUTATED | 3 | 0 | 2 | 0 | 0
JMJD4 WILD-TYPE | 15 | 11 | 19 | 18 | 11

'JMJD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S757. Gene #97: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
JMJD4 MUTATED | 3 | 1 | 1 | 0
JMJD4 WILD-TYPE | 21 | 13 | 16 | 23

'JMJD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S758. Gene #97: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
JMJD4 MUTATED | 3 | 1 | 1
JMJD4 WILD-TYPE | 20 | 32 | 21

'JMJD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S759. Gene #97: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
JMJD4 MUTATED | 3 | 1 | 1
JMJD4 WILD-TYPE | 34 | 15 | 25

'JMJD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S760. Gene #97: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
JMJD4 MUTATED | 1 | 1 | 3
JMJD4 WILD-TYPE | 25 | 9 | 40

'JMJD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S761. Gene #97: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
JMJD4 MUTATED | 3 | 1 | 1
JMJD4 WILD-TYPE | 35 | 17 | 22

'JMJD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S762. Gene #97: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
JMJD4 MUTATED | 3 | 1 | 1
JMJD4 WILD-TYPE | 38 | 10 | 26

'DOK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.609 (Chi-square test), Q value = 1

Table S763. Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
DOK7 MUTATED | 2 | 1 | 1 | 2 | 1
DOK7 WILD-TYPE | 30 | 22 | 14 | 8 | 8

'DOK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.373 (Chi-square test), Q value = 1

Table S764. Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
DOK7 MUTATED | 1 | 0 | 4 | 1 | 1
DOK7 WILD-TYPE | 17 | 11 | 17 | 17 | 10

'DOK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S765. Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
DOK7 MUTATED | 2 | 1 | 2 | 2
DOK7 WILD-TYPE | 22 | 13 | 15 | 21

'DOK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S766. Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
DOK7 MUTATED | 2 | 3 | 2
DOK7 WILD-TYPE | 21 | 30 | 20

'DOK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S767. Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
DOK7 MUTATED | 3 | 1 | 3
DOK7 WILD-TYPE | 34 | 15 | 23

'DOK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0198 (Fisher's exact test), Q value = 1

Table S768. Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
DOK7 MUTATED | 0 | 3 | 4
DOK7 WILD-TYPE | 26 | 7 | 39

Figure S57. Get High-res Image Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'DOK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S769. Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
DOK7 MUTATED | 3 | 1 | 3
DOK7 WILD-TYPE | 35 | 17 | 20

'DOK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 1

Table S770. Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
DOK7 MUTATED | 4 | 3 | 0
DOK7 WILD-TYPE | 37 | 8 | 27

Figure S58. Get High-res Image Gene #98: 'DOK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KNDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Chi-square test), Q value = 1

Table S771. Gene #99: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KNDC1 MUTATED | 4 | 4 | 3 | 3 | 2
KNDC1 WILD-TYPE | 28 | 19 | 12 | 7 | 7

'KNDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0847 (Chi-square test), Q value = 1

Table S772. Gene #99: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
KNDC1 MUTATED | 1 | 2 | 4 | 2 | 5
KNDC1 WILD-TYPE | 17 | 9 | 17 | 16 | 6

'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S773. Gene #99: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
KNDC1 MUTATED | 3 | 4 | 2 | 5
KNDC1 WILD-TYPE | 21 | 10 | 15 | 18

'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S774. Gene #99: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
KNDC1 MUTATED | 3 | 8 | 3
KNDC1 WILD-TYPE | 20 | 25 | 19

'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S775. Gene #99: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
KNDC1 MUTATED | 5 | 3 | 6
KNDC1 WILD-TYPE | 32 | 13 | 20

'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S776. Gene #99: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
KNDC1 MUTATED | 6 | 2 | 6
KNDC1 WILD-TYPE | 20 | 8 | 37

'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S777. Gene #99: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
KNDC1 MUTATED | 5 | 4 | 5
KNDC1 WILD-TYPE | 33 | 14 | 18

'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S778. Gene #99: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
KNDC1 MUTATED | 6 | 2 | 6
KNDC1 WILD-TYPE | 35 | 9 | 21

'SIX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00409 (Chi-square test), Q value = 1

Table S779. Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
SIX6 MUTATED | 0 | 0 | 3 | 0 | 0
SIX6 WILD-TYPE | 32 | 23 | 12 | 10 | 9

Figure S59. Get High-res Image Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SIX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0715 (Chi-square test), Q value = 1

Table S780. Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
SIX6 MUTATED | 0 | 0 | 3 | 0 | 0
SIX6 WILD-TYPE | 18 | 11 | 18 | 18 | 11

'SIX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00478 (Fisher's exact test), Q value = 1

Table S781. Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
SIX6 MUTATED | 0 | 3 | 0 | 0
SIX6 WILD-TYPE | 24 | 11 | 17 | 23

Figure S60. Get High-res Image Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SIX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 1

Table S782. Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
SIX6 MUTATED | 0 | 0 | 3
SIX6 WILD-TYPE | 23 | 33 | 19

Figure S61. Get High-res Image Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SIX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S783. Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
SIX6 MUTATED | 3 | 0 | 0
SIX6 WILD-TYPE | 34 | 16 | 26

'SIX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S784. Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
SIX6 MUTATED | 0 | 0 | 3
SIX6 WILD-TYPE | 26 | 10 | 40

'SIX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S785. Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
SIX6 MUTATED | 3 | 0 | 0
SIX6 WILD-TYPE | 35 | 18 | 23

'SIX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S786. Gene #100: 'SIX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
SIX6 MUTATED | 3 | 0 | 0
SIX6 WILD-TYPE | 38 | 11 | 27

'PDCD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0684 (Chi-square test), Q value = 1

Table S787. Gene #101: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PDCD6 MUTATED | 0 | 1 | 3 | 1 | 0
PDCD6 WILD-TYPE | 32 | 22 | 12 | 9 | 9

'PDCD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.482 (Chi-square test), Q value = 1

Table S788. Gene #101: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PDCD6 MUTATED | 1 | 0 | 1 | 1 | 2
PDCD6 WILD-TYPE | 17 | 11 | 20 | 17 | 9

'PDCD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S789. Gene #101: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PDCD6 MUTATED | 0 | 1 | 2 | 1
PDCD6 WILD-TYPE | 24 | 13 | 15 | 22

'PDCD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S790. Gene #101: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PDCD6 MUTATED | 0 | 2 | 2
PDCD6 WILD-TYPE | 23 | 31 | 20

'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S791. Gene #101: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PDCD6 MUTATED | 4 | 0 | 1
PDCD6 WILD-TYPE | 33 | 16 | 25

'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S792. Gene #101: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PDCD6 MUTATED | 1 | 0 | 4
PDCD6 WILD-TYPE | 25 | 10 | 39

'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S793. Gene #101: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PDCD6 MUTATED | 4 | 0 | 1
PDCD6 WILD-TYPE | 34 | 18 | 22

'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S794. Gene #101: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PDCD6 MUTATED | 4 | 0 | 1
PDCD6 WILD-TYPE | 37 | 11 | 26

'HNRNPCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Chi-square test), Q value = 1

Table S795. Gene #102: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
HNRNPCL1 MUTATED | 3 | 0 | 0 | 0 | 1
HNRNPCL1 WILD-TYPE | 29 | 23 | 15 | 10 | 8

'ATP6V0E2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.724 (Chi-square test), Q value = 1

Table S796. Gene #103: 'ATP6V0E2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ATP6V0E2 MUTATED | 2 | 1 | 0 | 1 | 0
ATP6V0E2 WILD-TYPE | 30 | 22 | 15 | 9 | 9

'ATP6V0E2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Chi-square test), Q value = 1

Table S797. Gene #103: 'ATP6V0E2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ATP6V0E2 MUTATED | 1 | 0 | 2 | 1 | 0
ATP6V0E2 WILD-TYPE | 17 | 11 | 19 | 17 | 11

'ATP6V0E2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S798. Gene #103: 'ATP6V0E2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ATP6V0E2 MUTATED | 1 | 0 | 2 | 1
ATP6V0E2 WILD-TYPE | 23 | 14 | 15 | 22

'ATP6V0E2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S799. Gene #103: 'ATP6V0E2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ATP6V0E2 MUTATED | 1 | 3 | 0
ATP6V0E2 WILD-TYPE | 22 | 30 | 22

'ATP6V0E2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 1

Table S800. Gene #103: 'ATP6V0E2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ATP6V0E2 MUTATED | 0 | 1 | 3
ATP6V0E2 WILD-TYPE | 37 | 15 | 23

'ATP6V0E2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S801. Gene #103: 'ATP6V0E2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ATP6V0E2 MUTATED | 2 | 1 | 1
ATP6V0E2 WILD-TYPE | 24 | 9 | 42

'ATP6V0E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S802. Gene #103: 'ATP6V0E2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ATP6V0E2 MUTATED | 1 | 0 | 3
ATP6V0E2 WILD-TYPE | 37 | 18 | 20

'ATP6V0E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S803. Gene #103: 'ATP6V0E2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ATP6V0E2 MUTATED | 1 | 1 | 2
ATP6V0E2 WILD-TYPE | 40 | 10 | 25

'HES3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.505 (Chi-square test), Q value = 1

Table S804. Gene #104: 'HES3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
HES3 MUTATED | 3 | 1 | 1 | 2 | 0
HES3 WILD-TYPE | 29 | 22 | 14 | 8 | 9

'HES3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.794 (Chi-square test), Q value = 1

Table S805. Gene #104: 'HES3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
HES3 MUTATED | 2 | 0 | 1 | 1 | 1
HES3 WILD-TYPE | 16 | 11 | 20 | 17 | 10

'HES3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S806. Gene #104: 'HES3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
HES3 MUTATED | 3 | 1 | 0 | 1
HES3 WILD-TYPE | 21 | 13 | 17 | 22

'HES3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S807. Gene #104: 'HES3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
HES3 MUTATED | 3 | 1 | 1
HES3 WILD-TYPE | 20 | 32 | 21

'HES3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S808. Gene #104: 'HES3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
HES3 MUTATED | 3 | 2 | 0
HES3 WILD-TYPE | 34 | 14 | 26

'HES3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S809. Gene #104: 'HES3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
HES3 MUTATED | 2 | 0 | 3
HES3 WILD-TYPE | 24 | 10 | 40

'HES3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S810. Gene #104: 'HES3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
HES3 MUTATED | 3 | 2 | 0
HES3 WILD-TYPE | 35 | 16 | 23

'HES3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S811. Gene #104: 'HES3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
HES3 MUTATED | 3 | 0 | 2
HES3 WILD-TYPE | 38 | 11 | 25

'AATK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Chi-square test), Q value = 1

Table S812. Gene #105: 'AATK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
AATK MUTATED | 1 | 4 | 2 | 1 | 1
AATK WILD-TYPE | 31 | 19 | 13 | 9 | 8

'AATK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Chi-square test), Q value = 1

Table S813. Gene #105: 'AATK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
AATK MUTATED | 1 | 1 | 4 | 0 | 1
AATK WILD-TYPE | 17 | 10 | 17 | 18 | 10

'AATK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S814. Gene #105: 'AATK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
AATK MUTATED | 1 | 2 | 2 | 2
AATK WILD-TYPE | 23 | 12 | 15 | 21

'AATK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S815. Gene #105: 'AATK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
AATK MUTATED | 1 | 2 | 4
AATK WILD-TYPE | 22 | 31 | 18

'AATK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S816. Gene #105: 'AATK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
AATK MUTATED | 4 | 1 | 2
AATK WILD-TYPE | 33 | 15 | 24

'AATK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S817. Gene #105: 'AATK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
AATK MUTATED | 3 | 0 | 4
AATK WILD-TYPE | 23 | 10 | 39

'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S818. Gene #105: 'AATK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
AATK MUTATED | 4 | 1 | 2
AATK WILD-TYPE | 34 | 17 | 21

'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S819. Gene #105: 'AATK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
AATK MUTATED | 4 | 0 | 3
AATK WILD-TYPE | 37 | 11 | 24

'FANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Chi-square test), Q value = 1

Table S820. Gene #106: 'FANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
FANK1 MUTATED | 2 | 1 | 1 | 0 | 0
FANK1 WILD-TYPE | 30 | 22 | 14 | 10 | 9

'FANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Chi-square test), Q value = 1

Table S821. Gene #106: 'FANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
FANK1 MUTATED | 0 | 1 | 0 | 1 | 1
FANK1 WILD-TYPE | 18 | 10 | 21 | 17 | 10

'FANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S822. Gene #106: 'FANK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
FANK1 MUTATED | 1 | 1 | 0 | 1
FANK1 WILD-TYPE | 23 | 13 | 17 | 22

'FANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S823. Gene #106: 'FANK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
FANK1 MUTATED | 1 | 2 | 0
FANK1 WILD-TYPE | 22 | 31 | 22

'FANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S824. Gene #106: 'FANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
FANK1 MUTATED | 1 | 1 | 1
FANK1 WILD-TYPE | 36 | 15 | 25

'FANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S825. Gene #106: 'FANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
FANK1 MUTATED | 0 | 1 | 2
FANK1 WILD-TYPE | 26 | 9 | 41

'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S826. Gene #106: 'FANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
FANK1 MUTATED | 1 | 1 | 1
FANK1 WILD-TYPE | 37 | 17 | 22

'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S827. Gene #106: 'FANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
FANK1 MUTATED | 2 | 1 | 0
FANK1 WILD-TYPE | 39 | 10 | 27

'FEZ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Chi-square test), Q value = 1

Table S828. Gene #107: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
FEZ2 MUTATED | 2 | 2 | 1 | 0 | 0
FEZ2 WILD-TYPE | 30 | 21 | 14 | 10 | 9

'FEZ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.982 (Chi-square test), Q value = 1

Table S829. Gene #107: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
FEZ2 MUTATED | 1 | 1 | 1 | 1 | 1
FEZ2 WILD-TYPE | 17 | 10 | 20 | 17 | 10

'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S830. Gene #107: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
FEZ2 MUTATED | 1 | 1 | 0 | 3
FEZ2 WILD-TYPE | 23 | 13 | 17 | 20

'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S831. Gene #107: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
FEZ2 MUTATED | 2 | 3 | 0
FEZ2 WILD-TYPE | 21 | 30 | 22

'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S832. Gene #107: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
FEZ2 MUTATED | 1 | 2 | 2
FEZ2 WILD-TYPE | 36 | 14 | 24

'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S833. Gene #107: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
FEZ2 MUTATED | 2 | 1 | 2
FEZ2 WILD-TYPE | 24 | 9 | 41

'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S834. Gene #107: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
FEZ2 MUTATED | 1 | 2 | 2
FEZ2 WILD-TYPE | 37 | 16 | 21

'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S835. Gene #107: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
FEZ2 MUTATED | 1 | 2 | 2
FEZ2 WILD-TYPE | 40 | 9 | 25

'HSD17B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Chi-square test), Q value = 1

Table S836. Gene #108: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
HSD17B1 MUTATED | 2 | 2 | 1 | 0 | 0
HSD17B1 WILD-TYPE | 30 | 21 | 14 | 10 | 9

'HSD17B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.246 (Chi-square test), Q value = 1

Table S837. Gene #108: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
HSD17B1 MUTATED | 0 | 0 | 1 | 3 | 1
HSD17B1 WILD-TYPE | 18 | 11 | 20 | 15 | 10

'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S838. Gene #108: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
HSD17B1 MUTATED | 2 | 1 | 1 | 1
HSD17B1 WILD-TYPE | 22 | 13 | 16 | 22

'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S839. Gene #108: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
HSD17B1 MUTATED | 0 | 4 | 1
HSD17B1 WILD-TYPE | 23 | 29 | 21

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S840. Gene #108: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
HSD17B1 MUTATED | 2 | 2 | 1
HSD17B1 WILD-TYPE | 35 | 14 | 25

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S841. Gene #108: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
HSD17B1 MUTATED | 2 | 0 | 3
HSD17B1 WILD-TYPE | 24 | 10 | 40

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S842. Gene #108: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
HSD17B1 MUTATED | 2 | 2 | 1
HSD17B1 WILD-TYPE | 36 | 16 | 22

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S843. Gene #108: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
HSD17B1 MUTATED | 2 | 0 | 3
HSD17B1 WILD-TYPE | 39 | 11 | 24

'PRKAR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.609 (Chi-square test), Q value = 1

Table S844. Gene #109: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PRKAR1A MUTATED | 2 | 1 | 1 | 2 | 1
PRKAR1A WILD-TYPE | 30 | 22 | 14 | 8 | 8

'PRKAR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.794 (Chi-square test), Q value = 1

Table S845. Gene #109: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PRKAR1A MUTATED | 1 | 1 | 2 | 1 | 2
PRKAR1A WILD-TYPE | 17 | 10 | 19 | 17 | 9

'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 1

Table S846. Gene #109: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PRKAR1A MUTATED | 2 | 1 | 4 | 0
PRKAR1A WILD-TYPE | 22 | 13 | 13 | 23

'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S847. Gene #109: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PRKAR1A MUTATED | 1 | 3 | 3
PRKAR1A WILD-TYPE | 22 | 30 | 19

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S848. Gene #109: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PRKAR1A MUTATED | 5 | 1 | 1
PRKAR1A WILD-TYPE | 32 | 15 | 25

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S849. Gene #109: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PRKAR1A MUTATED | 2 | 0 | 5
PRKAR1A WILD-TYPE | 24 | 10 | 38

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S850. Gene #109: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PRKAR1A MUTATED | 5 | 2 | 0
PRKAR1A WILD-TYPE | 33 | 16 | 23

'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S851. Gene #109: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PRKAR1A MUTATED | 5 | 0 | 2
PRKAR1A WILD-TYPE | 36 | 11 | 25

'ATOH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.626 (Chi-square test), Q value = 1

Table S852. Gene #110: 'ATOH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ATOH8 MUTATED | 2 | 0 | 1 | 1 | 0
ATOH8 WILD-TYPE | 30 | 23 | 14 | 9 | 9

'ATOH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Chi-square test), Q value = 1

Table S853. Gene #110: 'ATOH8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ATOH8 MUTATED | 0 | 0 | 1 | 1 | 1
ATOH8 WILD-TYPE | 18 | 11 | 20 | 17 | 10

'ATOH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S854. Gene #110: 'ATOH8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ATOH8 MUTATED | 1 | 0 | 1 | 1
ATOH8 WILD-TYPE | 23 | 14 | 16 | 22

'ATOH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S855. Gene #110: 'ATOH8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ATOH8 MUTATED | 1 | 1 | 1
ATOH8 WILD-TYPE | 22 | 32 | 21

'ATOH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S856. Gene #110: 'ATOH8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ATOH8 MUTATED | 2 | 0 | 1
ATOH8 WILD-TYPE | 35 | 16 | 25

'ATOH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S857. Gene #110: 'ATOH8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ATOH8 MUTATED | 0 | 1 | 2
ATOH8 WILD-TYPE | 26 | 9 | 41

'ATOH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S858. Gene #110: 'ATOH8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ATOH8 MUTATED | 2 | 0 | 1
ATOH8 WILD-TYPE | 36 | 18 | 22

'ATOH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S859. Gene #110: 'ATOH8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ATOH8 MUTATED | 2 | 1 | 0
ATOH8 WILD-TYPE | 39 | 10 | 27

'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.498 (Chi-square test), Q value = 1

Table S860. Gene #111: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
BTBD11 MUTATED | 2 | 3 | 3 | 1 | 0
BTBD11 WILD-TYPE | 30 | 20 | 12 | 9 | 9

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.872 (Chi-square test), Q value = 1

Table S861. Gene #111: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
BTBD11 MUTATED | 2 | 1 | 2 | 1 | 2
BTBD11 WILD-TYPE | 16 | 10 | 19 | 17 | 9

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S862. Gene #111: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
BTBD11 MUTATED | 1 | 1 | 4 | 2
BTBD11 WILD-TYPE | 23 | 13 | 13 | 21

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S863. Gene #111: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
BTBD11 MUTATED | 1 | 3 | 4
BTBD11 WILD-TYPE | 22 | 30 | 18

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S864. Gene #111: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
BTBD11 MUTATED | 5 | 1 | 2
BTBD11 WILD-TYPE | 32 | 15 | 24

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S865. Gene #111: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
BTBD11 MUTATED | 2 | 1 | 5
BTBD11 WILD-TYPE | 24 | 9 | 38

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S866. Gene #111: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
BTBD11 MUTATED | 5 | 1 | 2
BTBD11 WILD-TYPE | 33 | 17 | 21

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S867. Gene #111: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
BTBD11 MUTATED | 5 | 1 | 2
BTBD11 WILD-TYPE | 36 | 10 | 25

'KANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0378 (Chi-square test), Q value = 1

Table S868. Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KANK3 MUTATED | 0 | 1 | 3 | 2 | 0
KANK3 WILD-TYPE | 32 | 22 | 12 | 8 | 9

Figure S62. Get High-res Image Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Chi-square test), Q value = 1

Table S869. Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
KANK3 MUTATED | 2 | 0 | 2 | 0 | 1
KANK3 WILD-TYPE | 16 | 11 | 19 | 18 | 10

'KANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S870. Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
KANK3 MUTATED | 1 | 3 | 1 | 0
KANK3 WILD-TYPE | 23 | 11 | 16 | 23

Figure S63. Get High-res Image Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'KANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S871. Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
KANK3 MUTATED | 1 | 0 | 4
KANK3 WILD-TYPE | 22 | 33 | 18

Figure S64. Get High-res Image Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 1

Table S872. Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
KANK3 MUTATED | 2 | 3 | 0
KANK3 WILD-TYPE | 35 | 13 | 26

'KANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S873. Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
KANK3 MUTATED | 2 | 0 | 3
KANK3 WILD-TYPE | 24 | 10 | 40

'KANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S874. Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
KANK3 MUTATED | 2 | 3 | 0
KANK3 WILD-TYPE | 36 | 15 | 23

'KANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S875. Gene #112: 'KANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
KANK3 MUTATED | 3 | 0 | 2
KANK3 WILD-TYPE | 38 | 11 | 25

'PAQR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Chi-square test), Q value = 1

Table S876. Gene #113: 'PAQR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PAQR4 MUTATED | 1 | 1 | 1 | 0 | 0
PAQR4 WILD-TYPE | 31 | 22 | 14 | 10 | 9

'PAQR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.874 (Chi-square test), Q value = 1

Table S877. Gene #113: 'PAQR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PAQR4 MUTATED | 1 | 0 | 1 | 1 | 0
PAQR4 WILD-TYPE | 17 | 11 | 20 | 17 | 11

'PAQR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S878. Gene #113: 'PAQR4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PAQR4 MUTATED | 1 | 1 | 0 | 1
PAQR4 WILD-TYPE | 23 | 13 | 17 | 22

'PAQR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S879. Gene #113: 'PAQR4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PAQR4 MUTATED | 1 | 1 | 1
PAQR4 WILD-TYPE | 22 | 32 | 21

'PAQR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S880. Gene #113: 'PAQR4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PAQR4 MUTATED | 1 | 1 | 1
PAQR4 WILD-TYPE | 36 | 15 | 25

'PAQR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S881. Gene #113: 'PAQR4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PAQR4 MUTATED | 1 | 0 | 2
PAQR4 WILD-TYPE | 25 | 10 | 41

'PAQR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S882. Gene #113: 'PAQR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PAQR4 MUTATED | 2 | 0 | 1
PAQR4 WILD-TYPE | 36 | 18 | 22

'PAQR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S883. Gene #113: 'PAQR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PAQR4 MUTATED | 2 | 0 | 1
PAQR4 WILD-TYPE | 39 | 11 | 26

'NOM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.768 (Chi-square test), Q value = 1

Table S884. Gene #114: 'NOM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
NOM1 MUTATED | 2 | 3 | 1 | 1 | 0
NOM1 WILD-TYPE | 30 | 20 | 14 | 9 | 9

'NOM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Chi-square test), Q value = 1

Table S885. Gene #114: 'NOM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
NOM1 MUTATED | 1 | 1 | 1 | 1 | 2
NOM1 WILD-TYPE | 17 | 10 | 20 | 17 | 9

'NOM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S886. Gene #114: 'NOM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
NOM1 MUTATED | 2 | 0 | 1 | 3
NOM1 WILD-TYPE | 22 | 14 | 16 | 20

'NOM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S887. Gene #114: 'NOM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
NOM1 MUTATED | 2 | 3 | 1
NOM1 WILD-TYPE | 21 | 30 | 21

'NOM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S888. Gene #114: 'NOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
NOM1 MUTATED | 2 | 1 | 3
NOM1 WILD-TYPE | 35 | 15 | 23

'NOM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S889. Gene #114: 'NOM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
NOM1 MUTATED | 2 | 1 | 3
NOM1 WILD-TYPE | 24 | 9 | 40

'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S890. Gene #114: 'NOM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
NOM1 MUTATED | 2 | 1 | 3
NOM1 WILD-TYPE | 36 | 17 | 20

'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S891. Gene #114: 'NOM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
NOM1 MUTATED | 3 | 1 | 2
NOM1 WILD-TYPE | 38 | 10 | 25

'PLIN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Chi-square test), Q value = 1

Table S892. Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PLIN5 MUTATED | 1 | 4 | 0 | 1 | 0
PLIN5 WILD-TYPE | 31 | 19 | 15 | 9 | 9

'PLIN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Chi-square test), Q value = 1

Table S893. Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PLIN5 MUTATED | 1 | 2 | 1 | 2 | 0
PLIN5 WILD-TYPE | 17 | 9 | 20 | 16 | 11

'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S894. Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PLIN5 MUTATED | 1 | 1 | 2 | 2
PLIN5 WILD-TYPE | 23 | 13 | 15 | 21

'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S895. Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PLIN5 MUTATED | 1 | 2 | 3
PLIN5 WILD-TYPE | 22 | 31 | 19

'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S896. Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PLIN5 MUTATED | 1 | 2 | 3
PLIN5 WILD-TYPE | 36 | 14 | 23

'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S897. Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PLIN5 MUTATED | 5 | 0 | 1
PLIN5 WILD-TYPE | 21 | 10 | 42

Figure S65. Get High-res Image Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S898. Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PLIN5 MUTATED | 1 | 3 | 2
PLIN5 WILD-TYPE | 37 | 15 | 21

'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S899. Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PLIN5 MUTATED | 1 | 0 | 5
PLIN5 WILD-TYPE | 40 | 11 | 22

Figure S66. Get High-res Image Gene #115: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD320 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Chi-square test), Q value = 1

Table S900. Gene #116: 'CD320 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CD320 MUTATED | 3 | 1 | 1 | 0 | 0
CD320 WILD-TYPE | 29 | 22 | 14 | 10 | 9

'CD320 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.564 (Chi-square test), Q value = 1

Table S901. Gene #116: 'CD320 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CD320 MUTATED | 2 | 0 | 1 | 2 | 0
CD320 WILD-TYPE | 16 | 11 | 20 | 16 | 11

'CD320 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S902. Gene #116: 'CD320 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CD320 MUTATED | 2 | 0 | 2 | 1
CD320 WILD-TYPE | 22 | 14 | 15 | 22

'CD320 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S903. Gene #116: 'CD320 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CD320 MUTATED | 2 | 2 | 1
CD320 WILD-TYPE | 21 | 31 | 21

'CD320 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S904. Gene #116: 'CD320 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CD320 MUTATED | 4 | 1 | 0
CD320 WILD-TYPE | 33 | 15 | 26

'CD320 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S905. Gene #116: 'CD320 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CD320 MUTATED | 0 | 0 | 5
CD320 WILD-TYPE | 26 | 10 | 38

'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 1

Table S906. Gene #116: 'CD320 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CD320 MUTATED | 5 | 0 | 0
CD320 WILD-TYPE | 33 | 18 | 23

'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S907. Gene #116: 'CD320 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CD320 MUTATED | 5 | 0 | 0
CD320 WILD-TYPE | 36 | 11 | 27

'AVL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Chi-square test), Q value = 1

Table S908. Gene #117: 'AVL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
AVL9 MUTATED | 2 | 2 | 0 | 0 | 2
AVL9 WILD-TYPE | 30 | 21 | 15 | 10 | 7

'AVL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Chi-square test), Q value = 1

Table S909. Gene #117: 'AVL9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
AVL9 MUTATED | 2 | 1 | 0 | 0 | 1
AVL9 WILD-TYPE | 16 | 10 | 21 | 18 | 10

'AVL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S910. Gene #117: 'AVL9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
AVL9 MUTATED | 2 | 0 | 1 | 1
AVL9 WILD-TYPE | 22 | 14 | 16 | 22

'AVL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S911. Gene #117: 'AVL9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
AVL9 MUTATED | 2 | 1 | 1
AVL9 WILD-TYPE | 21 | 32 | 21

'AVL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S912. Gene #117: 'AVL9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
AVL9 MUTATED | 2 | 1 | 1
AVL9 WILD-TYPE | 35 | 15 | 25

'AVL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S913. Gene #117: 'AVL9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
AVL9 MUTATED | 1 | 1 | 2
AVL9 WILD-TYPE | 25 | 9 | 41

'AVL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S914. Gene #117: 'AVL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
AVL9 MUTATED | 2 | 1 | 1
AVL9 WILD-TYPE | 36 | 17 | 22

'AVL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S915. Gene #117: 'AVL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
AVL9 MUTATED | 2 | 1 | 1
AVL9 WILD-TYPE | 39 | 10 | 26

'ASB16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.808 (Chi-square test), Q value = 1

Table S916. Gene #118: 'ASB16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ASB16 MUTATED | 3 | 3 | 1 | 1 | 2
ASB16 WILD-TYPE | 29 | 20 | 14 | 9 | 7

'ASB16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.947 (Chi-square test), Q value = 1

Table S917. Gene #118: 'ASB16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ASB16 MUTATED | 2 | 1 | 1 | 1 | 1
ASB16 WILD-TYPE | 16 | 10 | 20 | 17 | 10

'ASB16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S918. Gene #118: 'ASB16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ASB16 MUTATED | 2 | 1 | 0 | 3
ASB16 WILD-TYPE | 22 | 13 | 17 | 20

'ASB16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S919. Gene #118: 'ASB16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ASB16 MUTATED | 2 | 3 | 1
ASB16 WILD-TYPE | 21 | 30 | 21

'ASB16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S920. Gene #118: 'ASB16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ASB16 MUTATED | 3 | 1 | 2
ASB16 WILD-TYPE | 34 | 15 | 24

'ASB16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S921. Gene #118: 'ASB16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ASB16 MUTATED | 2 | 1 | 3
ASB16 WILD-TYPE | 24 | 9 | 40

'ASB16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S922. Gene #118: 'ASB16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ASB16 MUTATED | 3 | 1 | 2
ASB16 WILD-TYPE | 35 | 17 | 21

'ASB16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S923. Gene #118: 'ASB16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ASB16 MUTATED | 3 | 1 | 2
ASB16 WILD-TYPE | 38 | 10 | 25

'SCRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.616 (Chi-square test), Q value = 1

Table S924. Gene #119: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
SCRT1 MUTATED | 1 | 2 | 2 | 1 | 0
SCRT1 WILD-TYPE | 31 | 21 | 13 | 9 | 9

'SCRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Chi-square test), Q value = 1

Table S925. Gene #119: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
SCRT1 MUTATED | 3 | 0 | 1 | 2 | 0
SCRT1 WILD-TYPE | 15 | 11 | 20 | 16 | 11

'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S926. Gene #119: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
SCRT1 MUTATED | 2 | 2 | 1 | 1
SCRT1 WILD-TYPE | 22 | 12 | 16 | 22

'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S927. Gene #119: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
SCRT1 MUTATED | 2 | 2 | 2
SCRT1 WILD-TYPE | 21 | 31 | 20

'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S928. Gene #119: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
SCRT1 MUTATED | 3 | 2 | 1
SCRT1 WILD-TYPE | 34 | 14 | 25

'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S929. Gene #119: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
SCRT1 MUTATED | 3 | 0 | 3
SCRT1 WILD-TYPE | 23 | 10 | 40

'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S930. Gene #119: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
SCRT1 MUTATED | 3 | 2 | 1
SCRT1 WILD-TYPE | 35 | 16 | 22

'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S931. Gene #119: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
SCRT1 MUTATED | 3 | 0 | 3
SCRT1 WILD-TYPE | 38 | 11 | 24

'FOXQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0765 (Chi-square test), Q value = 1

Table S932. Gene #120: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
FOXQ1 MUTATED | 1 | 0 | 0 | 2 | 1
FOXQ1 WILD-TYPE | 31 | 23 | 15 | 8 | 8

'FOXQ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0866 (Chi-square test), Q value = 1

Table S933. Gene #120: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
FOXQ1 MUTATED | 0 | 0 | 1 | 0 | 2
FOXQ1 WILD-TYPE | 18 | 11 | 20 | 18 | 9

'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S934. Gene #120: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
FOXQ1 MUTATED | 1 | 0 | 1 | 1
FOXQ1 WILD-TYPE | 23 | 14 | 16 | 22

'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S935. Gene #120: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
FOXQ1 MUTATED | 1 | 2 | 0
FOXQ1 WILD-TYPE | 22 | 31 | 22

'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S936. Gene #120: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
FOXQ1 MUTATED | 1 | 0 | 2
FOXQ1 WILD-TYPE | 36 | 16 | 24

'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S937. Gene #120: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
FOXQ1 MUTATED | 2 | 0 | 1
FOXQ1 WILD-TYPE | 24 | 10 | 42

'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S938. Gene #120: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
FOXQ1 MUTATED | 1 | 1 | 1
FOXQ1 WILD-TYPE | 37 | 17 | 22

'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S939. Gene #120: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
FOXQ1 MUTATED | 1 | 0 | 2
FOXQ1 WILD-TYPE | 40 | 11 | 25

'NPTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Chi-square test), Q value = 1

Table S940. Gene #121: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
NPTX1 MUTATED | 5 | 0 | 0 | 0 | 1
NPTX1 WILD-TYPE | 27 | 23 | 15 | 10 | 8

'NPTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Chi-square test), Q value = 1

Table S941. Gene #121: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
NPTX1 MUTATED | 1 | 1 | 1 | 3 | 0
NPTX1 WILD-TYPE | 17 | 10 | 20 | 15 | 11

'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S942. Gene #121: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
NPTX1 MUTATED | 2 | 0 | 1 | 3
NPTX1 WILD-TYPE | 22 | 14 | 16 | 20

'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S943. Gene #121: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
NPTX1 MUTATED | 2 | 4 | 0
NPTX1 WILD-TYPE | 21 | 29 | 22

'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S944. Gene #121: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
NPTX1 MUTATED | 3 | 0 | 3
NPTX1 WILD-TYPE | 34 | 16 | 23

'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S945. Gene #121: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
NPTX1 MUTATED | 1 | 2 | 3
NPTX1 WILD-TYPE | 25 | 8 | 40

'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S946. Gene #121: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
NPTX1 MUTATED | 3 | 0 | 3
NPTX1 WILD-TYPE | 35 | 18 | 20

'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 1

Table S947. Gene #121: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
NPTX1 MUTATED | 2 | 3 | 1
NPTX1 WILD-TYPE | 39 | 8 | 26

'ZNF285 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Chi-square test), Q value = 1

Table S948. Gene #122: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ZNF285 MUTATED | 1 | 2 | 0 | 0 | 0
ZNF285 WILD-TYPE | 31 | 21 | 15 | 10 | 9

'PTPLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Chi-square test), Q value = 1

Table S949. Gene #123: 'PTPLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PTPLA MUTATED | 3 | 0 | 1 | 2 | 0
PTPLA WILD-TYPE | 29 | 23 | 14 | 8 | 9

'PTPLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Chi-square test), Q value = 1

Table S950. Gene #123: 'PTPLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PTPLA MUTATED | 1 | 1 | 3 | 0 | 0
PTPLA WILD-TYPE | 17 | 10 | 18 | 18 | 11

'PTPLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S951. Gene #123: 'PTPLA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PTPLA MUTATED | 2 | 0 | 2 | 1
PTPLA WILD-TYPE | 22 | 14 | 15 | 22

'PTPLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S952. Gene #123: 'PTPLA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PTPLA MUTATED | 2 | 1 | 2
PTPLA WILD-TYPE | 21 | 32 | 20

'PTPLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S953. Gene #123: 'PTPLA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PTPLA MUTATED | 2 | 1 | 2
PTPLA WILD-TYPE | 35 | 15 | 24

'PTPLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S954. Gene #123: 'PTPLA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PTPLA MUTATED | 2 | 0 | 3
PTPLA WILD-TYPE | 24 | 10 | 40

'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S955. Gene #123: 'PTPLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PTPLA MUTATED | 2 | 2 | 1
PTPLA WILD-TYPE | 36 | 16 | 22

'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S956. Gene #123: 'PTPLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PTPLA MUTATED | 3 | 0 | 2
PTPLA WILD-TYPE | 38 | 11 | 25

'PRSS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.439 (Chi-square test), Q value = 1

Table S957. Gene #124: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PRSS27 MUTATED | 1 | 1 | 2 | 0 | 0
PRSS27 WILD-TYPE | 31 | 22 | 13 | 10 | 9

'PRSS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Chi-square test), Q value = 1

Table S958. Gene #124: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PRSS27 MUTATED | 0 | 1 | 2 | 1 | 0
PRSS27 WILD-TYPE | 18 | 10 | 19 | 17 | 11

'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S959. Gene #124: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PRSS27 MUTATED | 1 | 2 | 1 | 0
PRSS27 WILD-TYPE | 23 | 12 | 16 | 23

'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S960. Gene #124: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PRSS27 MUTATED | 0 | 1 | 3
PRSS27 WILD-TYPE | 23 | 32 | 19

'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S961. Gene #124: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PRSS27 MUTATED | 2 | 2 | 0
PRSS27 WILD-TYPE | 35 | 14 | 26

'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S962. Gene #124: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PRSS27 MUTATED | 1 | 0 | 3
PRSS27 WILD-TYPE | 25 | 10 | 40

'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S963. Gene #124: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PRSS27 MUTATED | 2 | 2 | 0
PRSS27 WILD-TYPE | 36 | 16 | 23

'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S964. Gene #124: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PRSS27 MUTATED | 2 | 0 | 2
PRSS27 WILD-TYPE | 39 | 11 | 25

'LRRN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.838 (Chi-square test), Q value = 1

Table S965. Gene #125: 'LRRN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
LRRN4 MUTATED | 1 | 1 | 1 | 1 | 0
LRRN4 WILD-TYPE | 31 | 22 | 14 | 9 | 9

'LRRN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Chi-square test), Q value = 1

Table S966. Gene #125: 'LRRN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
LRRN4 MUTATED | 0 | 0 | 1 | 2 | 1
LRRN4 WILD-TYPE | 18 | 11 | 20 | 16 | 10

'LRRN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S967. Gene #125: 'LRRN4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
LRRN4 MUTATED | 2 | 1 | 0 | 1
LRRN4 WILD-TYPE | 22 | 13 | 17 | 22

'LRRN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S968. Gene #125: 'LRRN4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
LRRN4 MUTATED | 1 | 2 | 1
LRRN4 WILD-TYPE | 22 | 31 | 21

'LRRN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S969. Gene #125: 'LRRN4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
LRRN4 MUTATED | 3 | 1 | 0
LRRN4 WILD-TYPE | 34 | 15 | 26

'LRRN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S970. Gene #125: 'LRRN4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
LRRN4 MUTATED | 0 | 0 | 4
LRRN4 WILD-TYPE | 26 | 10 | 39

'LRRN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S971. Gene #125: 'LRRN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
LRRN4 MUTATED | 3 | 1 | 0
LRRN4 WILD-TYPE | 35 | 17 | 23

'LRRN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S972. Gene #125: 'LRRN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
LRRN4 MUTATED | 3 | 0 | 1
LRRN4 WILD-TYPE | 38 | 11 | 26

'EP400 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Chi-square test), Q value = 1

Table S973. Gene #126: 'EP400 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
EP400 MUTATED | 1 | 1 | 1 | 0 | 0
EP400 WILD-TYPE | 31 | 22 | 14 | 10 | 9

'EP400 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Chi-square test), Q value = 1

Table S974. Gene #126: 'EP400 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
EP400 MUTATED | 1 | 0 | 2 | 1 | 0
EP400 WILD-TYPE | 17 | 11 | 19 | 17 | 11

'EP400 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S975. Gene #126: 'EP400 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
EP400 MUTATED | 1 | 2 | 0 | 1
EP400 WILD-TYPE | 23 | 12 | 17 | 22

'EP400 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S976. Gene #126: 'EP400 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
EP400 MUTATED | 1 | 1 | 2
EP400 WILD-TYPE | 22 | 32 | 20

'EP400 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S977. Gene #126: 'EP400 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
EP400 MUTATED | 2 | 1 | 1
EP400 WILD-TYPE | 35 | 15 | 25

'EP400 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S978. Gene #126: 'EP400 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
EP400 MUTATED | 2 | 0 | 2
EP400 WILD-TYPE | 24 | 10 | 41

'EP400 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S979. Gene #126: 'EP400 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
EP400 MUTATED | 2 | 1 | 1
EP400 WILD-TYPE | 36 | 17 | 22

'EP400 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S980. Gene #126: 'EP400 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
EP400 MUTATED | 2 | 0 | 2
EP400 WILD-TYPE | 39 | 11 | 25

'LTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Chi-square test), Q value = 1

Table S981. Gene #127: 'LTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
LTK MUTATED | 2 | 1 | 1 | 0 | 0
LTK WILD-TYPE | 30 | 22 | 14 | 10 | 9

'CCDC96 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Chi-square test), Q value = 1

Table S982. Gene #128: 'CCDC96 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
CCDC96 MUTATED | 0 | 1 | 1 | 2 | 0
CCDC96 WILD-TYPE | 32 | 22 | 14 | 8 | 9

'CCDC96 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Chi-square test), Q value = 1

Table S983. Gene #128: 'CCDC96 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
CCDC96 MUTATED | 0 | 0 | 2 | 1 | 1
CCDC96 WILD-TYPE | 18 | 11 | 19 | 17 | 10

'CCDC96 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S984. Gene #128: 'CCDC96 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
CCDC96 MUTATED | 1 | 1 | 1 | 1
CCDC96 WILD-TYPE | 23 | 13 | 16 | 22

'CCDC96 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S985. Gene #128: 'CCDC96 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
CCDC96 MUTATED | 1 | 1 | 2
CCDC96 WILD-TYPE | 22 | 32 | 20

'CCDC96 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S986. Gene #128: 'CCDC96 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
CCDC96 MUTATED | 2 | 1 | 1
CCDC96 WILD-TYPE | 35 | 15 | 25

'CCDC96 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S987. Gene #128: 'CCDC96 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
CCDC96 MUTATED | 1 | 0 | 3
CCDC96 WILD-TYPE | 25 | 10 | 40

'CCDC96 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S988. Gene #128: 'CCDC96 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
CCDC96 MUTATED | 2 | 1 | 1
CCDC96 WILD-TYPE | 36 | 17 | 22

'CCDC96 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S989. Gene #128: 'CCDC96 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
CCDC96 MUTATED | 3 | 0 | 1
CCDC96 WILD-TYPE | 38 | 11 | 26

'PCMTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Chi-square test), Q value = 1

Table S990. Gene #129: 'PCMTD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PCMTD1 MUTATED | 0 | 2 | 0 | 1 | 0
PCMTD1 WILD-TYPE | 32 | 21 | 15 | 9 | 9

'PCMTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Chi-square test), Q value = 1

Table S991. Gene #129: 'PCMTD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PCMTD1 MUTATED | 0 | 0 | 3 | 1 | 0
PCMTD1 WILD-TYPE | 18 | 11 | 18 | 17 | 11

'PCMTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S992. Gene #129: 'PCMTD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PCMTD1 MUTATED | 0 | 1 | 2 | 1
PCMTD1 WILD-TYPE | 24 | 13 | 15 | 22

'PCMTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S993. Gene #129: 'PCMTD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PCMTD1 MUTATED | 0 | 2 | 2
PCMTD1 WILD-TYPE | 23 | 31 | 20

'PCMTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S994. Gene #129: 'PCMTD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PCMTD1 MUTATED | 2 | 1 | 1
PCMTD1 WILD-TYPE | 35 | 15 | 25

'PCMTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S995. Gene #129: 'PCMTD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PCMTD1 MUTATED | 2 | 0 | 2
PCMTD1 WILD-TYPE | 24 | 10 | 41

'PCMTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S996. Gene #129: 'PCMTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PCMTD1 MUTATED | 2 | 1 | 1
PCMTD1 WILD-TYPE | 36 | 17 | 22

'PCMTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S997. Gene #129: 'PCMTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PCMTD1 MUTATED | 2 | 0 | 2
PCMTD1 WILD-TYPE | 39 | 11 | 25

'GLI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.731 (Chi-square test), Q value = 1

Table S998. Gene #130: 'GLI3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
GLI3 MUTATED | 4 | 2 | 0 | 1 | 1
GLI3 WILD-TYPE | 28 | 21 | 15 | 9 | 8

'GLI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Chi-square test), Q value = 1

Table S999. Gene #130: 'GLI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
GLI3 MUTATED | 2 | 0 | 0 | 3 | 2
GLI3 WILD-TYPE | 16 | 11 | 21 | 15 | 9

'GLI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1000. Gene #130: 'GLI3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
GLI3 MUTATED | 2 | 0 | 2 | 3
GLI3 WILD-TYPE | 22 | 14 | 15 | 20

'GLI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S1001. Gene #130: 'GLI3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
GLI3 MUTATED | 2 | 5 | 0
GLI3 WILD-TYPE | 21 | 28 | 22

'GLI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S1002. Gene #130: 'GLI3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
GLI3 MUTATED | 5 | 0 | 2
GLI3 WILD-TYPE | 32 | 16 | 24

'GLI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1003. Gene #130: 'GLI3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
GLI3 MUTATED | 2 | 0 | 5
GLI3 WILD-TYPE | 24 | 10 | 38

'GLI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1004. Gene #130: 'GLI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
GLI3 MUTATED | 5 | 1 | 1
GLI3 WILD-TYPE | 33 | 17 | 22

'GLI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1005. Gene #130: 'GLI3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
GLI3 MUTATED | 4 | 1 | 2
GLI3 WILD-TYPE | 37 | 10 | 25

'MN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.767 (Chi-square test), Q value = 1

Table S1006. Gene #131: 'MN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
MN1 MUTATED | 2 | 2 | 2 | 2 | 1
MN1 WILD-TYPE | 30 | 21 | 13 | 8 | 8

'MN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Chi-square test), Q value = 1

Table S1007. Gene #131: 'MN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
MN1 MUTATED | 2 | 0 | 2 | 1 | 3
MN1 WILD-TYPE | 16 | 11 | 19 | 17 | 8

'MN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1008. Gene #131: 'MN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
MN1 MUTATED | 3 | 1 | 1 | 3
MN1 WILD-TYPE | 21 | 13 | 16 | 20

'MN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1009. Gene #131: 'MN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
MN1 MUTATED | 3 | 3 | 2
MN1 WILD-TYPE | 20 | 30 | 20

'MN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1010. Gene #131: 'MN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
MN1 MUTATED | 5 | 0 | 3
MN1 WILD-TYPE | 32 | 16 | 23

'MN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S1011. Gene #131: 'MN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
MN1 MUTATED | 1 | 2 | 5
MN1 WILD-TYPE | 25 | 8 | 38

'MN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1012. Gene #131: 'MN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
MN1 MUTATED | 5 | 0 | 3
MN1 WILD-TYPE | 33 | 18 | 20

'MN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1013. Gene #131: 'MN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
MN1 MUTATED | 5 | 2 | 1
MN1 WILD-TYPE | 36 | 9 | 26

'C9ORF66 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Chi-square test), Q value = 1

Table S1014. Gene #132: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
C9ORF66 MUTATED | 1 | 3 | 2 | 1 | 0
C9ORF66 WILD-TYPE | 31 | 20 | 13 | 9 | 9

'C9ORF66 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.947 (Chi-square test), Q value = 1

Table S1015. Gene #132: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
C9ORF66 MUTATED | 1 | 1 | 1 | 2 | 1
C9ORF66 WILD-TYPE | 17 | 10 | 20 | 16 | 10

'C9ORF66 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1016. Gene #132: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
C9ORF66 MUTATED | 2 | 2 | 1 | 1
C9ORF66 WILD-TYPE | 22 | 12 | 16 | 22

'C9ORF66 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1017. Gene #132: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
C9ORF66 MUTATED | 1 | 2 | 3
C9ORF66 WILD-TYPE | 22 | 31 | 19

'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1018. Gene #132: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
C9ORF66 MUTATED | 3 | 2 | 1
C9ORF66 WILD-TYPE | 34 | 14 | 25

'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1019. Gene #132: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
C9ORF66 MUTATED | 2 | 0 | 4
C9ORF66 WILD-TYPE | 24 | 10 | 39

'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1020. Gene #132: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
C9ORF66 MUTATED | 3 | 2 | 1
C9ORF66 WILD-TYPE | 35 | 16 | 22

'C9ORF66 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S1021. Gene #132: 'C9ORF66 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
C9ORF66 MUTATED | 3 | 0 | 3
C9ORF66 WILD-TYPE | 38 | 11 | 24

'MADCAM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0541 (Chi-square test), Q value = 1

Table S1022. Gene #133: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
MADCAM1 MUTATED | 0 | 2 | 3 | 0 | 0
MADCAM1 WILD-TYPE | 32 | 21 | 12 | 10 | 9

'MADCAM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Chi-square test), Q value = 1

Table S1023. Gene #133: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
MADCAM1 MUTATED | 1 | 0 | 2 | 1 | 1
MADCAM1 WILD-TYPE | 17 | 11 | 19 | 17 | 10

'MADCAM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S1024. Gene #133: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
MADCAM1 MUTATED | 0 | 1 | 2 | 1
MADCAM1 WILD-TYPE | 24 | 13 | 15 | 22

'MADCAM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1025. Gene #133: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
MADCAM1 MUTATED | 0 | 2 | 2
MADCAM1 WILD-TYPE | 23 | 31 | 20

'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S1026. Gene #133: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
MADCAM1 MUTATED | 4 | 0 | 1
MADCAM1 WILD-TYPE | 33 | 16 | 25

'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1027. Gene #133: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
MADCAM1 MUTATED | 0 | 1 | 4
MADCAM1 WILD-TYPE | 26 | 9 | 39

'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1028. Gene #133: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
MADCAM1 MUTATED | 4 | 0 | 1
MADCAM1 WILD-TYPE | 34 | 18 | 22

'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1029. Gene #133: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
MADCAM1 MUTATED | 4 | 1 | 0
MADCAM1 WILD-TYPE | 37 | 10 | 27

'BMP8A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Chi-square test), Q value = 1

Table S1030. Gene #134: 'BMP8A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
BMP8A MUTATED | 2 | 0 | 0 | 0 | 1
BMP8A WILD-TYPE | 30 | 23 | 15 | 10 | 8

'BMP8A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.661 (Chi-square test), Q value = 1

Table S1031. Gene #134: 'BMP8A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
BMP8A MUTATED | 1 | 0 | 0 | 1 | 1
BMP8A WILD-TYPE | 17 | 11 | 21 | 17 | 10

'BMP8A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1032. Gene #134: 'BMP8A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
BMP8A MUTATED | 1 | 0 | 1 | 1
BMP8A WILD-TYPE | 23 | 14 | 16 | 22

'BMP8A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1033. Gene #134: 'BMP8A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
BMP8A MUTATED | 1 | 2 | 0
BMP8A WILD-TYPE | 22 | 31 | 22

'BMP8A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1034. Gene #134: 'BMP8A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
BMP8A MUTATED | 2 | 0 | 1
BMP8A WILD-TYPE | 35 | 16 | 25

'BMP8A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1035. Gene #134: 'BMP8A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
BMP8A MUTATED | 1 | 0 | 2
BMP8A WILD-TYPE | 25 | 10 | 41

'BMP8A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1036. Gene #134: 'BMP8A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
BMP8A MUTATED | 2 | 1 | 0
BMP8A WILD-TYPE | 36 | 17 | 23

'BMP8A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1037. Gene #134: 'BMP8A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
BMP8A MUTATED | 1 | 1 | 1
BMP8A WILD-TYPE | 40 | 10 | 26

'ODF3L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Chi-square test), Q value = 1

Table S1038. Gene #135: 'ODF3L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ODF3L2 MUTATED | 1 | 1 | 1 | 0 | 0
ODF3L2 WILD-TYPE | 31 | 22 | 14 | 10 | 9

'ODF3L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.661 (Chi-square test), Q value = 1

Table S1039. Gene #135: 'ODF3L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ODF3L2 MUTATED | 1 | 0 | 0 | 1 | 1
ODF3L2 WILD-TYPE | 17 | 11 | 21 | 17 | 10

'ODF3L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1040. Gene #135: 'ODF3L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ODF3L2 MUTATED | 2 | 0 | 0 | 1
ODF3L2 WILD-TYPE | 22 | 14 | 17 | 22

'ODF3L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1041. Gene #135: 'ODF3L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ODF3L2 MUTATED | 1 | 2 | 0
ODF3L2 WILD-TYPE | 22 | 31 | 22

'ODF3L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1042. Gene #135: 'ODF3L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ODF3L2 MUTATED | 1 | 1 | 1
ODF3L2 WILD-TYPE | 36 | 15 | 25

'ODF3L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1043. Gene #135: 'ODF3L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ODF3L2 MUTATED | 2 | 0 | 1
ODF3L2 WILD-TYPE | 24 | 10 | 42

'ODF3L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1044. Gene #135: 'ODF3L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ODF3L2 MUTATED | 1 | 1 | 1
ODF3L2 WILD-TYPE | 37 | 17 | 22

'ODF3L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1045. Gene #135: 'ODF3L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ODF3L2 MUTATED | 1 | 0 | 2
ODF3L2 WILD-TYPE | 40 | 11 | 25

'QRICH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.724 (Chi-square test), Q value = 1

Table S1046. Gene #136: 'QRICH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
QRICH2 MUTATED | 2 | 1 | 0 | 1 | 0
QRICH2 WILD-TYPE | 30 | 22 | 15 | 9 | 9

'QRICH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Chi-square test), Q value = 1

Table S1047. Gene #136: 'QRICH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
QRICH2 MUTATED | 2 | 0 | 1 | 1 | 0
QRICH2 WILD-TYPE | 16 | 11 | 20 | 17 | 11

'QRICH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1048. Gene #136: 'QRICH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
QRICH2 MUTATED | 2 | 0 | 2 | 0
QRICH2 WILD-TYPE | 22 | 14 | 15 | 23

'QRICH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1049. Gene #136: 'QRICH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
QRICH2 MUTATED | 2 | 2 | 0
QRICH2 WILD-TYPE | 21 | 31 | 22

'QRICH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S1050. Gene #136: 'QRICH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
QRICH2 MUTATED | 2 | 0 | 2
QRICH2 WILD-TYPE | 35 | 16 | 24

'QRICH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1051. Gene #136: 'QRICH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
QRICH2 MUTATED | 1 | 1 | 2
QRICH2 WILD-TYPE | 25 | 9 | 41

'QRICH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1052. Gene #136: 'QRICH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
QRICH2 MUTATED | 2 | 0 | 2
QRICH2 WILD-TYPE | 36 | 18 | 21

'QRICH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1053. Gene #136: 'QRICH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
QRICH2 MUTATED | 2 | 1 | 1
QRICH2 WILD-TYPE | 39 | 10 | 26

'KRTAP10-7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Chi-square test), Q value = 1

Table S1054. Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KRTAP10-7 MUTATED | 2 | 2 | 0 | 1 | 0
KRTAP10-7 WILD-TYPE | 30 | 21 | 15 | 9 | 9

'KRTAP10-7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Chi-square test), Q value = 1

Table S1055. Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
KRTAP10-7 MUTATED | 0 | 1 | 3 | 1 | 0
KRTAP10-7 WILD-TYPE | 18 | 10 | 18 | 17 | 11

'KRTAP10-7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1056. Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
KRTAP10-7 MUTATED | 1 | 1 | 2 | 1
KRTAP10-7 WILD-TYPE | 23 | 13 | 15 | 22

'KRTAP10-7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1057. Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
KRTAP10-7 MUTATED | 1 | 2 | 2
KRTAP10-7 WILD-TYPE | 22 | 31 | 20

'KRTAP10-7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 1

Table S1058. Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
KRTAP10-7 MUTATED | 0 | 3 | 2
KRTAP10-7 WILD-TYPE | 37 | 13 | 24

Figure S67. Get High-res Image Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KRTAP10-7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1059. Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
KRTAP10-7 MUTATED | 1 | 2 | 2
KRTAP10-7 WILD-TYPE | 25 | 8 | 41

'KRTAP10-7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 1

Table S1060. Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
KRTAP10-7 MUTATED | 0 | 3 | 2
KRTAP10-7 WILD-TYPE | 38 | 15 | 21

Figure S68. Get High-res Image Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'KRTAP10-7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1061. Gene #137: 'KRTAP10-7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
KRTAP10-7 MUTATED | 2 | 2 | 1
KRTAP10-7 WILD-TYPE | 39 | 9 | 26

'IDI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.573 (Chi-square test), Q value = 1

Table S1062. Gene #138: 'IDI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
IDI1 MUTATED | 2 | 1 | 2 | 0 | 0
IDI1 WILD-TYPE | 30 | 22 | 13 | 10 | 9

'IDI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.564 (Chi-square test), Q value = 1

Table S1063. Gene #138: 'IDI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
IDI1 MUTATED | 2 | 0 | 1 | 2 | 0
IDI1 WILD-TYPE | 16 | 11 | 20 | 16 | 11

'IDI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1064. Gene #138: 'IDI1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
IDI1 MUTATED | 1 | 2 | 1 | 1
IDI1 WILD-TYPE | 23 | 12 | 16 | 22

'IDI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1065. Gene #138: 'IDI1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
IDI1 MUTATED | 1 | 2 | 2
IDI1 WILD-TYPE | 22 | 31 | 20

'IDI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1066. Gene #138: 'IDI1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
IDI1 MUTATED | 2 | 1 | 2
IDI1 WILD-TYPE | 35 | 15 | 24

'IDI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1067. Gene #138: 'IDI1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
IDI1 MUTATED | 3 | 0 | 2
IDI1 WILD-TYPE | 23 | 10 | 41

'IDI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1068. Gene #138: 'IDI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
IDI1 MUTATED | 2 | 1 | 2
IDI1 WILD-TYPE | 36 | 17 | 21

'IDI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1069. Gene #138: 'IDI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
IDI1 MUTATED | 2 | 0 | 3
IDI1 WILD-TYPE | 39 | 11 | 24

'IER5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Chi-square test), Q value = 1

Table S1070. Gene #139: 'IER5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
IER5 MUTATED | 3 | 0 | 0 | 0 | 0
IER5 WILD-TYPE | 29 | 23 | 15 | 10 | 9

'PRR21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.585 (Chi-square test), Q value = 1

Table S1071. Gene #140: 'PRR21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PRR21 MUTATED | 2 | 3 | 1 | 0 | 0
PRR21 WILD-TYPE | 30 | 20 | 14 | 10 | 9

'PRR21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Chi-square test), Q value = 1

Table S1072. Gene #140: 'PRR21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PRR21 MUTATED | 0 | 1 | 1 | 2 | 1
PRR21 WILD-TYPE | 18 | 10 | 20 | 16 | 10

'PRR21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S1073. Gene #140: 'PRR21 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PRR21 MUTATED | 2 | 1 | 0 | 2
PRR21 WILD-TYPE | 22 | 13 | 17 | 21

'PRR21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1074. Gene #140: 'PRR21 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PRR21 MUTATED | 1 | 3 | 1
PRR21 WILD-TYPE | 22 | 30 | 21

'PRR21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1075. Gene #140: 'PRR21 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PRR21 MUTATED | 2 | 1 | 2
PRR21 WILD-TYPE | 35 | 15 | 24

'PRR21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1076. Gene #140: 'PRR21 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PRR21 MUTATED | 2 | 1 | 2
PRR21 WILD-TYPE | 24 | 9 | 41

'PRR21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1077. Gene #140: 'PRR21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PRR21 MUTATED | 2 | 1 | 2
PRR21 WILD-TYPE | 36 | 17 | 21

'PRR21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1078. Gene #140: 'PRR21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PRR21 MUTATED | 2 | 1 | 2
PRR21 WILD-TYPE | 39 | 10 | 25

'ARRDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Chi-square test), Q value = 1

Table S1079. Gene #141: 'ARRDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
ARRDC4 MUTATED | 4 | 1 | 2 | 0 | 0
ARRDC4 WILD-TYPE | 28 | 22 | 13 | 10 | 9

'ARRDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Chi-square test), Q value = 1

Table S1080. Gene #141: 'ARRDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
ARRDC4 MUTATED | 2 | 2 | 2 | 0 | 0
ARRDC4 WILD-TYPE | 16 | 9 | 19 | 18 | 11

'ARRDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1081. Gene #141: 'ARRDC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
ARRDC4 MUTATED | 3 | 1 | 2 | 0
ARRDC4 WILD-TYPE | 21 | 13 | 15 | 23

'ARRDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S1082. Gene #141: 'ARRDC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
ARRDC4 MUTATED | 4 | 1 | 1
ARRDC4 WILD-TYPE | 19 | 32 | 21

'ARRDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1083. Gene #141: 'ARRDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
ARRDC4 MUTATED | 3 | 2 | 1
ARRDC4 WILD-TYPE | 34 | 14 | 25

'ARRDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1084. Gene #141: 'ARRDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
ARRDC4 MUTATED | 1 | 1 | 4
ARRDC4 WILD-TYPE | 25 | 9 | 39

'ARRDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1085. Gene #141: 'ARRDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
ARRDC4 MUTATED | 3 | 2 | 1
ARRDC4 WILD-TYPE | 35 | 16 | 22

'ARRDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1086. Gene #141: 'ARRDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
ARRDC4 MUTATED | 4 | 1 | 1
ARRDC4 WILD-TYPE | 37 | 10 | 26

'RNF135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.709 (Chi-square test), Q value = 1

Table S1087. Gene #142: 'RNF135 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RNF135 MUTATED | 1 | 2 | 1 | 0 | 0
RNF135 WILD-TYPE | 31 | 21 | 14 | 10 | 9

'RNF135 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Chi-square test), Q value = 1

Table S1088. Gene #142: 'RNF135 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RNF135 MUTATED | 1 | 0 | 0 | 2 | 0
RNF135 WILD-TYPE | 17 | 11 | 21 | 16 | 11

'RNF135 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S1089. Gene #142: 'RNF135 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RNF135 MUTATED | 0 | 1 | 0 | 2
RNF135 WILD-TYPE | 24 | 13 | 17 | 21

'RNF135 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1090. Gene #142: 'RNF135 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RNF135 MUTATED | 0 | 2 | 1
RNF135 WILD-TYPE | 23 | 31 | 21

'RNF135 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1091. Gene #142: 'RNF135 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RNF135 MUTATED | 1 | 1 | 1
RNF135 WILD-TYPE | 36 | 15 | 25

'RNF135 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1092. Gene #142: 'RNF135 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RNF135 MUTATED | 2 | 0 | 1
RNF135 WILD-TYPE | 24 | 10 | 42

'RNF135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1093. Gene #142: 'RNF135 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RNF135 MUTATED | 1 | 1 | 1
RNF135 WILD-TYPE | 37 | 17 | 22

'RNF135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1094. Gene #142: 'RNF135 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RNF135 MUTATED | 1 | 0 | 2
RNF135 WILD-TYPE | 40 | 11 | 25

'DAXX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Chi-square test), Q value = 1

Table S1095. Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
DAXX MUTATED | 1 | 0 | 3 | 0 | 0
DAXX WILD-TYPE | 31 | 23 | 12 | 10 | 9

Figure S69. Get High-res Image Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DAXX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Chi-square test), Q value = 1

Table S1096. Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
DAXX MUTATED | 1 | 0 | 3 | 0 | 0
DAXX WILD-TYPE | 17 | 11 | 18 | 18 | 11

'DAXX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1097. Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
DAXX MUTATED | 1 | 2 | 1 | 0
DAXX WILD-TYPE | 23 | 12 | 16 | 23

'DAXX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0362 (Fisher's exact test), Q value = 1

Table S1098. Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
DAXX MUTATED | 1 | 0 | 3
DAXX WILD-TYPE | 22 | 33 | 19

Figure S70. Get High-res Image Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'DAXX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1099. Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
DAXX MUTATED | 3 | 1 | 0
DAXX WILD-TYPE | 34 | 15 | 26

'DAXX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1100. Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
DAXX MUTATED | 1 | 0 | 3
DAXX WILD-TYPE | 25 | 10 | 40

'DAXX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1101. Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
DAXX MUTATED | 3 | 1 | 0
DAXX WILD-TYPE | 35 | 17 | 23

'DAXX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1102. Gene #143: 'DAXX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
DAXX MUTATED | 3 | 0 | 1
DAXX WILD-TYPE | 38 | 11 | 26

'VARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Chi-square test), Q value = 1

Table S1103. Gene #144: 'VARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
VARS MUTATED | 2 | 2 | 1 | 2 | 1
VARS WILD-TYPE | 30 | 21 | 14 | 8 | 8

'VARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.931 (Chi-square test), Q value = 1

Table S1104. Gene #144: 'VARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
VARS MUTATED | 1 | 1 | 3 | 2 | 1
VARS WILD-TYPE | 17 | 10 | 18 | 16 | 10

'VARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1105. Gene #144: 'VARS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
VARS MUTATED | 2 | 0 | 4 | 2
VARS WILD-TYPE | 22 | 14 | 13 | 21

'VARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1106. Gene #144: 'VARS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
VARS MUTATED | 1 | 3 | 4
VARS WILD-TYPE | 22 | 30 | 18

'VARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1107. Gene #144: 'VARS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
VARS MUTATED | 2 | 3 | 3
VARS WILD-TYPE | 35 | 13 | 23

'VARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1108. Gene #144: 'VARS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
VARS MUTATED | 3 | 1 | 4
VARS WILD-TYPE | 23 | 9 | 39

'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1109. Gene #144: 'VARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
VARS MUTATED | 2 | 4 | 2
VARS WILD-TYPE | 36 | 14 | 21

'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1110. Gene #144: 'VARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
VARS MUTATED | 3 | 1 | 4
VARS WILD-TYPE | 38 | 10 | 23

'GPR20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.626 (Chi-square test), Q value = 1

Table S1111. Gene #145: 'GPR20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
GPR20 MUTATED | 2 | 0 | 1 | 1 | 0
GPR20 WILD-TYPE | 30 | 23 | 14 | 9 | 9

'GPR20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Chi-square test), Q value = 1

Table S1112. Gene #145: 'GPR20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
GPR20 MUTATED | 1 | 0 | 1 | 0 | 1
GPR20 WILD-TYPE | 17 | 11 | 20 | 18 | 10

'GPR20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1113. Gene #145: 'GPR20 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
GPR20 MUTATED | 1 | 0 | 2 | 0
GPR20 WILD-TYPE | 23 | 14 | 15 | 23

'GPR20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1114. Gene #145: 'GPR20 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
GPR20 MUTATED | 1 | 1 | 1
GPR20 WILD-TYPE | 22 | 32 | 21

'GPR20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1115. Gene #145: 'GPR20 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
GPR20 MUTATED | 2 | 1 | 0
GPR20 WILD-TYPE | 35 | 15 | 26

'GPR20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1116. Gene #145: 'GPR20 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
GPR20 MUTATED | 1 | 0 | 2
GPR20 WILD-TYPE | 25 | 10 | 41

'GPR20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1117. Gene #145: 'GPR20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
GPR20 MUTATED | 2 | 1 | 0
GPR20 WILD-TYPE | 36 | 17 | 23

'GPR20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1118. Gene #145: 'GPR20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
GPR20 MUTATED | 2 | 0 | 1
GPR20 WILD-TYPE | 39 | 11 | 26

'SAMD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.433 (Chi-square test), Q value = 1

Table S1119. Gene #146: 'SAMD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
SAMD11 MUTATED | 2 | 0 | 0 | 1 | 0
SAMD11 WILD-TYPE | 30 | 23 | 15 | 9 | 9

'DMWD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.254 (Chi-square test), Q value = 1

Table S1120. Gene #147: 'DMWD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
DMWD MUTATED | 1 | 0 | 2 | 0 | 1
DMWD WILD-TYPE | 31 | 23 | 13 | 10 | 8

'DMWD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.788 (Chi-square test), Q value = 1

Table S1121. Gene #147: 'DMWD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
DMWD MUTATED | 1 | 1 | 1 | 0 | 1
DMWD WILD-TYPE | 17 | 10 | 20 | 18 | 10

'DMWD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1122. Gene #147: 'DMWD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
DMWD MUTATED | 1 | 1 | 2 | 0
DMWD WILD-TYPE | 23 | 13 | 15 | 23

'DMWD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S1123. Gene #147: 'DMWD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
DMWD MUTATED | 2 | 1 | 1
DMWD WILD-TYPE | 21 | 32 | 21

'DMWD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1124. Gene #147: 'DMWD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
DMWD MUTATED | 2 | 1 | 1
DMWD WILD-TYPE | 35 | 15 | 25

'DMWD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1125. Gene #147: 'DMWD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
DMWD MUTATED | 1 | 0 | 3
DMWD WILD-TYPE | 25 | 10 | 40

'DMWD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1126. Gene #147: 'DMWD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
DMWD MUTATED | 2 | 2 | 0
DMWD WILD-TYPE | 36 | 16 | 23

'DMWD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1127. Gene #147: 'DMWD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
DMWD MUTATED | 3 | 0 | 1
DMWD WILD-TYPE | 38 | 11 | 26

'KISS1R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Chi-square test), Q value = 1

Table S1128. Gene #148: 'KISS1R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
KISS1R MUTATED | 1 | 1 | 1 | 0 | 0
KISS1R WILD-TYPE | 31 | 22 | 14 | 10 | 9

'PLEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Chi-square test), Q value = 1

Table S1129. Gene #149: 'PLEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
PLEC MUTATED | 6 | 7 | 2 | 1 | 1
PLEC WILD-TYPE | 26 | 16 | 13 | 9 | 8

'PLEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.75 (Chi-square test), Q value = 1

Table S1130. Gene #149: 'PLEC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
PLEC MUTATED | 4 | 3 | 2 | 3 | 2
PLEC WILD-TYPE | 14 | 8 | 19 | 15 | 9

'PLEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1131. Gene #149: 'PLEC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
PLEC MUTATED | 3 | 1 | 6 | 4
PLEC WILD-TYPE | 21 | 13 | 11 | 19

'PLEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1132. Gene #149: 'PLEC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
PLEC MUTATED | 3 | 7 | 4
PLEC WILD-TYPE | 20 | 26 | 18

'PLEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1133. Gene #149: 'PLEC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
PLEC MUTATED | 6 | 4 | 4
PLEC WILD-TYPE | 31 | 12 | 22

'PLEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1134. Gene #149: 'PLEC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
PLEC MUTATED | 4 | 3 | 7
PLEC WILD-TYPE | 22 | 7 | 36

'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1135. Gene #149: 'PLEC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
PLEC MUTATED | 7 | 3 | 4
PLEC WILD-TYPE | 31 | 15 | 19

'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1136. Gene #149: 'PLEC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
PLEC MUTATED | 7 | 3 | 4
PLEC WILD-TYPE | 34 | 8 | 23

'FAM110C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.723 (Chi-square test), Q value = 1

Table S1137. Gene #150: 'FAM110C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
FAM110C MUTATED | 2 | 1 | 0 | 0 | 0
FAM110C WILD-TYPE | 30 | 22 | 15 | 10 | 9

'FAM110C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Chi-square test), Q value = 1

Table S1138. Gene #150: 'FAM110C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
FAM110C MUTATED | 1 | 1 | 1 | 0 | 0
FAM110C WILD-TYPE | 17 | 10 | 20 | 18 | 11

'FAM110C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1139. Gene #150: 'FAM110C MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
FAM110C MUTATED | 2 | 0 | 1 | 0
FAM110C WILD-TYPE | 22 | 14 | 16 | 23

'FAM110C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1140. Gene #150: 'FAM110C MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
FAM110C MUTATED | 2 | 1 | 0
FAM110C WILD-TYPE | 21 | 32 | 22

'FAM110C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1141. Gene #150: 'FAM110C MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
FAM110C MUTATED | 2 | 0 | 1
FAM110C WILD-TYPE | 35 | 16 | 25

'FAM110C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S1142. Gene #150: 'FAM110C MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
FAM110C MUTATED | 0 | 1 | 2
FAM110C WILD-TYPE | 26 | 9 | 41

'FAM110C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1143. Gene #150: 'FAM110C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
FAM110C MUTATED | 2 | 0 | 1
FAM110C WILD-TYPE | 36 | 18 | 22

'FAM110C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1144. Gene #150: 'FAM110C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
FAM110C MUTATED | 2 | 1 | 0
FAM110C WILD-TYPE | 39 | 10 | 27

'RCCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Chi-square test), Q value = 1

Table S1145. Gene #151: 'RCCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 32 | 23 | 15 | 10 | 9
RCCD1 MUTATED | 2 | 2 | 0 | 1 | 0
RCCD1 WILD-TYPE | 30 | 21 | 15 | 9 | 9

'RCCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Chi-square test), Q value = 1

Table S1146. Gene #151: 'RCCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5
--- | --- | --- | --- | --- | ---
ALL | 18 | 11 | 21 | 18 | 11
RCCD1 MUTATED | 0 | 0 | 1 | 2 | 0
RCCD1 WILD-TYPE | 18 | 11 | 20 | 16 | 11

'RCCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1147. Gene #151: 'RCCD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 24 | 14 | 17 | 23
RCCD1 MUTATED | 0 | 0 | 1 | 2
RCCD1 WILD-TYPE | 24 | 14 | 16 | 21

'RCCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1148. Gene #151: 'RCCD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 23 | 33 | 22
RCCD1 MUTATED | 0 | 2 | 1
RCCD1 WILD-TYPE | 23 | 31 | 21

'RCCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1149. Gene #151: 'RCCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 37 | 16 | 26
RCCD1 MUTATED | 1 | 1 | 1
RCCD1 WILD-TYPE | 36 | 15 | 25

'RCCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1150. Gene #151: 'RCCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 26 | 10 | 43
RCCD1 MUTATED | 1 | 0 | 2
RCCD1 WILD-TYPE | 25 | 10 | 41

'RCCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1151. Gene #151: 'RCCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 38 | 18 | 23
RCCD1 MUTATED | 1 | 1 | 1
RCCD1 WILD-TYPE | 37 | 17 | 22

'RCCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1152. Gene #151: 'RCCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 41 | 11 | 27
RCCD1 MUTATED | 1 | 1 | 1
RCCD1 WILD-TYPE | 40 | 10 | 26

Methods & Data
Input

- Mutation data file = transformed.cor.cli.txt

- Molecular subtypes file = ACC-TP.transferedmergedcluster.txt

- Number of patients = 91

- Number of significantly mutated genes = 151

- Number of Molecular subtypes = 8

- Exclude genes that fewer than K tumors have mutations, K = 3

Chi-square test

For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

- Analysis Results (MD5 checksum)

- Auxiliary Data (MD5 checksum)

- MAGE-TAB File (MD5 checksum)

References
[1] Greenwood and Nikulin, A guide to chi-squared testing, Wiley, New York. ISBN 047155779X (1996)
[2] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[3] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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