Clinical Features Time to Death AGE NEOPLASM.DISEASESTAGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE PATHOLOGY.M.STAGE GENDER KARNOFSKY.PERFORMANCE.SCORE NUMBERPACKYEARSSMOKED NUMBER.OF.LYMPH.NODES GLEASON_SCORE nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q t-test_P t-test_Q t-test_P t-test_Q t-test_P t-test_Q 1p gain 45 (23%) 150 0.03011 1 0.60535 1 0.64459 1 0.97025 1 0.055687 1 0.71472 1 0.24473 1 0.48296 1 0.16779 1 0.45414 1 0.44506 1 1q gain 62 (32%) 133 0.11528 1 0.78218 1 0.072421 1 0.69291 1 0.05087 1 0.068482 1 0.47817 1 0.84857 1 0.099234 1 0.16681 1 0.26286 1 2p gain 58 (30%) 137 0.45935 1 0.0085824 1 0.043545 1 0.92481 1 0.0036326 1 0.8242 1 0.00088625 0.769 0.9895 1 0.076478 1 0.089635 1 0.78214 1 2q gain 25 (13%) 170 0.79116 1 0.50708 1 0.94608 1 0.55212 1 0.8016 1 0.20484 1 0.21156 1 0.16327 1 0.99189 1 0.27506 1 0.29541 1 3p gain 66 (34%) 129 0.64669 1 0.11876 1 0.026828 1 0.21534 1 0.084319 1 0.95909 1 0.72735 1 0.073869 1 0.26613 1 0.095755 1 0.94541 1 3q gain 84 (43%) 111 0.75545 1 0.098801 1 0.028539 1 0.54851 1 0.0044764 1 0.5413 1 1 1 0.44317 1 0.52658 1 0.030856 1 0.46923 1 4p gain 20 (10%) 175 0.17765 1 0.73629 1 0.55034 1 0.081513 1 0.058982 1 0.1493 1 0.27677 1 0.63146 1 0.61173 1 0.43002 1 0.29691 1 4q gain 12 (6%) 183 0.33433 1 0.85961 1 0.52222 1 0.30136 1 0.87418 1 0.44251 1 1 1 0.90467 1 0.33599 1 0.17266 1 0.81124 1 5p gain 78 (40%) 117 0.80988 1 0.2905 1 0.70373 1 0.64937 1 0.83424 1 0.039042 1 0.73636 1 0.51335 1 0.35287 1 0.26075 1 0.046938 1 5q gain 26 (13%) 169 0.78554 1 0.81281 1 0.14975 1 0.62521 1 0.19817 1 0.8428 1 0.62782 1 0.4413 1 0.60812 1 0.00015958 0.139 0.25655 1 6p gain 27 (14%) 168 0.97065 1 0.70848 1 0.76352 1 0.67121 1 0.39879 1 0.43903 1 0.63027 1 0.74294 1 0.24889 1 0.96898 1 0.95541 1 6q gain 17 (9%) 178 0.52378 1 0.39116 1 0.95749 1 0.8219 1 0.099557 1 0.37787 1 0.25059 1 0.45469 1 0.10892 1 0.79142 1 0.60294 1 7p gain 81 (42%) 114 0.82128 1 0.079182 1 0.15115 1 0.47907 1 0.042204 1 0.8123 1 0.73834 1 0.40197 1 0.718 1 0.23004 1 0.092287 1 7q gain 73 (37%) 122 0.70185 1 0.2387 1 0.38566 1 0.54864 1 0.00098788 0.856 0.1705 1 0.30785 1 0.30112 1 0.53758 1 0.17729 1 0.12878 1 8p gain 37 (19%) 158 0.37628 1 0.69239 1 0.19572 1 0.35881 1 0.74132 1 0.63197 1 0.52477 1 0.73845 1 0.33595 1 0.13311 1 0.00012824 0.112 8q gain 86 (44%) 109 0.65905 1 0.57586 1 0.22027 1 0.95755 1 0.66113 1 0.88331 1 0.73981 1 0.70446 1 0.64979 1 0.19933 1 0.046938 1 9p gain 32 (16%) 163 0.015458 1 0.77377 1 0.46588 1 0.96094 1 0.28672 1 0.33099 1 0.50367 1 0.51696 1 0.0043761 1 0.74854 1 0.76742 1 9q gain 26 (13%) 169 0.19059 1 0.1487 1 0.052768 1 0.30565 1 0.37293 1 0.031923 1 0.46572 1 0.98344 1 0.028002 1 0.61959 1 0.0001338 0.117 10p gain 54 (28%) 141 0.20883 1 0.9401 1 0.61078 1 0.92252 1 0.3048 1 0.23725 1 0.71235 1 0.3055 1 0.42558 1 0.59994 1 0.14795 1 10q gain 17 (9%) 178 0.47624 1 0.3155 1 0.37936 1 0.54484 1 0.10898 1 0.65386 1 0.76827 1 0.7859 1 0.22919 1 0.34101 1 0.50807 1 11p gain 19 (10%) 176 0.01253 1 0.81651 1 0.83037 1 0.54484 1 0.032774 1 0.53904 1 0.047695 1 0.8176 1 0.81247 1 0.57082 1 0.37275 1 11q gain 25 (13%) 170 0.28735 1 0.20155 1 0.76577 1 0.83252 1 0.06947 1 0.41389 1 0.045709 1 0.80938 1 0.89925 1 0.46533 1 0.13904 1 12p gain 61 (31%) 134 0.523 1 0.046752 1 0.60549 1 0.59475 1 0.84048 1 0.46626 1 0.47878 1 0.91637 1 0.086484 1 0.69042 1 0.53 1 12q gain 45 (23%) 150 0.41876 1 0.72338 1 0.23991 1 0.69501 1 0.46048 1 0.21048 1 0.69777 1 0.70224 1 0.02629 1 0.33918 1 0.55775 1 13q gain 47 (24%) 148 0.82488 1 0.26601 1 0.24834 1 1 1 0.047839 1 0.02978 1 0.56594 1 0.56591 1 0.88624 1 0.48305 1 0.88507 1 14q gain 36 (18%) 159 0.19947 1 0.28653 1 0.19443 1 0.14686 1 0.34162 1 0.033351 1 0.20053 1 0.57984 1 0.64575 1 0.16562 1 0.90922 1 15q gain 19 (10%) 176 0.77365 1 0.33842 1 0.89259 1 0.30375 1 0.12693 1 0.051962 1 1 1 0.44565 1 0.68041 1 0.79864 1 0.00014441 0.126 16p gain 29 (15%) 166 0.058488 1 0.60921 1 0.10941 1 0.032841 1 0.24597 1 0.027487 1 0.48304 1 0.86063 1 0.44996 1 0.88532 1 0.16148 1 16q gain 37 (19%) 158 0.40405 1 0.69051 1 0.22374 1 0.086214 1 0.079533 1 0.06804 1 0.13617 1 0.90502 1 0.9944 1 0.38394 1 0.28029 1 17p gain 29 (15%) 166 0.0022249 1 0.034592 1 0.13447 1 0.35285 1 0.62909 1 0.46358 1 1 1 0.24708 1 0.28396 1 0.016568 1 0.82376 1 17q gain 64 (33%) 131 0.015667 1 0.44305 1 0.32389 1 0.45786 1 0.10209 1 0.72595 1 0.47994 1 0.10469 1 0.19004 1 0.86063 1 0.12651 1 18p gain 56 (29%) 139 0.42263 1 0.82965 1 0.71305 1 0.18105 1 0.84549 1 0.10114 1 0.46363 1 0.0091135 1 0.64078 1 0.89907 1 0.36602 1 18q gain 30 (15%) 165 0.070024 1 0.76971 1 0.74253 1 0.062221 1 0.89604 1 0.39532 1 0.8187 1 0.0013408 1 0.61091 1 0.98561 1 0.29497 1 19p gain 38 (19%) 157 0.61415 1 0.35136 1 0.34873 1 0.37148 1 0.34291 1 0.59008 1 0.40382 1 0.98884 1 0.97732 1 0.58677 1 0.0001338 0.117 19q gain 64 (33%) 131 0.42526 1 0.9786 1 0.073923 1 0.10211 1 0.14336 1 0.83705 1 0.72401 1 0.22165 1 0.33788 1 0.15951 1 0.40435 1 20p gain 99 (51%) 96 0.16261 1 0.49931 1 0.52815 1 0.93679 1 0.54327 1 0.50394 1 1 1 0.32347 1 0.16399 1 0.11045 1 0.14795 1 20q gain 112 (57%) 83 0.5606 1 0.66151 1 0.85275 1 0.42145 1 0.56556 1 0.59037 1 0.405 1 0.52201 1 0.35688 1 0.83221 1 0.4261 1 21q gain 61 (31%) 134 0.78809 1 0.02138 1 0.22511 1 0.7388 1 0.042427 1 0.8315 1 0.59103 1 0.8408 1 0.23759 1 0.49256 1 0.33314 1 22q gain 28 (14%) 167 0.96854 1 0.94145 1 0.30868 1 0.80971 1 0.51063 1 0.40976 1 0.47996 1 0.48522 1 0.86285 1 0.23075 1 0.29497 1 xq gain 20 (10%) 175 0.31711 1 0.9965 1 0.37243 1 0.23798 1 0.83977 1 1 1 1 1 0.28313 1 0.40858 1 0.021865 1 0.0001338 0.117 1p loss 13 (7%) 182 0.43365 1 0.3667 1 0.68228 1 0.22299 1 0.42248 1 0.018567 1 0.52602 1 0.90467 1 0.12558 1 0.94387 1 0.19475 1 1q loss 15 (8%) 180 0.58665 1 0.71058 1 0.65489 1 0.23188 1 0.86334 1 0.73016 1 0.76504 1 0.22931 1 0.001725 1 0.96512 1 0.33097 1 2p loss 19 (10%) 176 0.99204 1 0.80549 1 0.5175 1 0.14646 1 0.20461 1 0.41979 1 0.047695 1 0.8367 1 0.31375 1 0.188 1 0.29691 1 2q loss 44 (23%) 151 0.64226 1 0.47804 1 0.24952 1 0.80651 1 0.048377 1 0.94406 1 0.6919 1 0.39425 1 0.51434 1 0.95871 1 0.77697 1 3p loss 24 (12%) 171 0.57711 1 0.14018 1 0.78777 1 0.10308 1 0.4919 1 0.74954 1 0.13205 1 0.86908 1 0.54419 1 0.82204 1 0.70828 1 3q loss 10 (5%) 185 0.92127 1 0.14697 1 1 1 0.3742 1 0.49893 1 0.21275 1 0.70995 1 2.1704e-06 0.0019 0.37859 1 0.32479 1 0.38434 1 4p loss 68 (35%) 127 0.36739 1 0.18994 1 0.37315 1 0.49075 1 0.14374 1 0.44805 1 1 1 0.80074 1 0.18274 1 0.31643 1 0.45778 1 4q loss 68 (35%) 127 0.87175 1 0.048671 1 0.43381 1 0.26469 1 0.21621 1 0.31227 1 0.48636 1 0.52829 1 0.35557 1 0.68719 1 0.09242 1 5p loss 31 (16%) 164 0.45744 1 0.048819 1 0.63878 1 0.92239 1 0.48614 1 0.2351 1 0.36237 1 0.050552 1 0.53581 1 0.45291 1 0.16148 1 5q loss 72 (37%) 123 0.68684 1 0.37709 1 0.011308 1 0.34089 1 0.0069639 1 0.0036134 1 1 1 0.0081314 1 0.81059 1 0.071702 1 0.51831 1 6p loss 48 (25%) 147 0.76506 1 0.488 1 0.044587 1 0.015492 1 0.022352 1 0.68817 1 0.24832 1 0.5633 1 0.45885 1 0.20787 1 0.18665 1 6q loss 72 (37%) 123 0.83586 1 0.7289 1 0.064044 1 0.26305 1 0.02216 1 0.43439 1 0.30222 1 0.31027 1 0.95348 1 0.028816 1 1 1 7p loss 8 (4%) 187 0.25564 1 0.41596 1 0.62998 1 0.78225 1 0.15924 1 1 1 0.682 1 0.90467 1 0.70797 1 0.41772 1 0.52824 1 7q loss 9 (5%) 186 0.96387 1 0.5503 1 0.78579 1 0.72793 1 0.67902 1 0.61747 1 0.45705 1 NA NA 0.0036706 1 0.65635 1 NA NA 8p loss 86 (44%) 109 0.94752 1 0.27331 1 0.061363 1 0.49235 1 0.16349 1 0.00020562 0.179 0.73981 1 0.048361 1 0.52246 1 0.71243 1 0.67944 1 8q loss 19 (10%) 176 0.99799 1 0.36766 1 0.11092 1 0.029644 1 0.14002 1 0.093035 1 0.57466 1 0.61355 1 0.98784 1 0.31352 1 0.29691 1 9p loss 83 (43%) 112 0.99843 1 0.11455 1 0.77344 1 0.9574 1 0.89907 1 1 1 0.5018 1 0.79873 1 0.70583 1 0.47653 1 0.52621 1 9q loss 75 (38%) 120 0.8757 1 0.1681 1 0.83209 1 0.74592 1 0.8134 1 0.77603 1 0.3054 1 0.67067 1 0.38751 1 0.74283 1 0.94598 1 10p loss 38 (19%) 157 0.7191 1 0.74663 1 0.83133 1 0.37064 1 0.54999 1 0.21274 1 0.67713 1 0.044992 1 0.16553 1 0.40932 1 0.65259 1 10q loss 64 (33%) 131 0.59263 1 0.083549 1 0.97419 1 0.9273 1 0.80018 1 0.40043 1 0.86058 1 0.025237 1 0.87913 1 0.81986 1 0.58491 1 11p loss 73 (37%) 122 0.51119 1 0.040225 1 0.015781 1 0.66599 1 0.046935 1 0.11315 1 0.6068 1 0.52085 1 0.66676 1 0.07173 1 0.76417 1 11q loss 56 (29%) 139 0.59044 1 0.76121 1 0.52123 1 0.81663 1 0.14855 1 0.74595 1 0.7141 1 0.30741 1 0.2336 1 0.58189 1 0.18987 1 12p loss 19 (10%) 176 0.37738 1 0.77294 1 0.36324 1 0.7918 1 0.09394 1 0.20137 1 0.16782 1 0.9396 1 0.062454 1 0.29553 1 0.16148 1 12q loss 22 (11%) 173 0.91509 1 0.13425 1 0.046402 1 0.66319 1 0.002368 1 0.1782 1 0.60259 1 0.82856 1 0.17772 1 0.20321 1 0.5126 1 13q loss 43 (22%) 152 0.12973 1 0.88802 1 0.75163 1 1 1 0.94365 1 0.74485 1 0.16656 1 0.0011952 1 0.59789 1 0.99222 1 0.95331 1 14q loss 53 (27%) 142 0.59687 1 0.31249 1 0.26805 1 0.67816 1 0.14458 1 0.94939 1 0.14043 1 0.47684 1 0.14431 1 0.33821 1 0.48063 1 15q loss 63 (32%) 132 0.80741 1 0.59133 1 0.23007 1 0.17244 1 0.64109 1 0.052754 1 0.86058 1 0.16141 1 0.36574 1 0.34268 1 0.44506 1 16p loss 52 (27%) 143 0.29213 1 0.66427 1 0.23024 1 0.060682 1 0.65714 1 0.05599 1 0.85207 1 0.85774 1 0.69866 1 0.11025 1 0.35915 1 16q loss 48 (25%) 147 0.97919 1 0.59958 1 0.7424 1 0.45097 1 0.3541 1 0.026971 1 0.33701 1 0.46402 1 0.69904 1 0.45518 1 0.28246 1 17p loss 82 (42%) 113 0.83449 1 0.17239 1 0.3668 1 0.83588 1 0.88878 1 0.84547 1 1 1 0.67073 1 0.34135 1 0.5229 1 0.31578 1 17q loss 25 (13%) 170 0.39558 1 0.1707 1 0.65159 1 0.16939 1 0.41855 1 0.11467 1 0.6285 1 0.80745 1 0.43592 1 0.50393 1 0.5126 1 18p loss 46 (24%) 149 0.92199 1 0.95047 1 0.21626 1 0.41836 1 0.36944 1 0.23885 1 0.5583 1 0.22298 1 0.19086 1 0.72205 1 0.18665 1 18q loss 68 (35%) 127 0.27914 1 0.74365 1 0.68218 1 0.66992 1 0.95243 1 0.87925 1 0.29621 1 0.83675 1 0.68632 1 0.98114 1 0.78214 1 19p loss 50 (26%) 145 0.027595 1 0.19102 1 0.027735 1 0.054201 1 0.078516 1 0.017311 1 0.56916 1 0.50027 1 0.62474 1 0.89297 1 0.46114 1 19q loss 30 (15%) 165 0.055973 1 0.76163 1 0.91428 1 0.054827 1 0.71863 1 0.095008 1 1 1 0.83129 1 0.56885 1 0.13342 1 0.90835 1 20p loss 14 (7%) 181 0.77947 1 0.49979 1 0.75841 1 0.78184 1 0.39921 1 0.59726 1 1 1 0.28722 1 0.0011634 1 0.74752 1 0.38434 1 20q loss 5 (3%) 190 0.71659 1 0.96114 1 0.090303 1 0.36535 1 0.043554 1 0.4554 1 0.59832 1 NA NA 0.0020836 1 0.42224 1 NA NA 21q loss 28 (14%) 167 0.094099 1 0.066528 1 0.71449 1 0.17849 1 0.028727 1 0.5501 1 0.47996 1 0.11705 1 0.93254 1 0.84204 1 0.54806 1 22q loss 73 (37%) 122 0.51481 1 0.35203 1 0.040547 1 0.15694 1 0.14096 1 0.017742 1 0.73395 1 0.032159 1 0.47912 1 0.82368 1 0.49911 1 xq loss 38 (19%) 157 0.63376 1 0.36739 1 0.50496 1 0.32862 1 0.68631 1 0.25115 1 0.40382 1 0.81493 1 0.74678 1 0.83089 1 0.69989 1