Clinical Features CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 53 (21%) 197 0.00019563 0.151 0.053939 1 0.5103 1 0.51093 1 0.61066 1 1 1 0.86888 1 0.94063 1 0.75103 1 0.93088 1 1q gain 78 (31%) 172 0.0023679 1 0.31868 1 0.5703 1 0.71423 1 0.75332 1 0.93833 1 0.82626 1 0.62652 1 0.4658 1 0.9706 1 2p gain 73 (29%) 177 4.1271e-05 0.0321 0.00088171 0.667 0.39443 1 0.7827 1 0.31945 1 0.26217 1 0.12911 1 0.12718 1 0.32004 1 0.0043932 1 2q gain 34 (14%) 216 0.037236 1 0.073852 1 0.52925 1 0.7019 1 0.86205 1 0.75203 1 0.63082 1 0.4631 1 0.94492 1 0.34915 1 3p gain 89 (36%) 161 5.509e-06 0.00435 0.11218 1 0.1049 1 0.31096 1 0.0084893 1 0.045186 1 0.0013727 1 0.027791 1 0.0032645 1 0.0087368 1 3q gain 112 (45%) 138 0.00027364 0.21 0.71191 1 0.43085 1 0.9262 1 0.14657 1 0.082385 1 0.0018975 1 0.0032709 1 0.0013545 1 0.0010231 0.773 4p gain 31 (12%) 219 0.061493 1 0.010915 1 0.47848 1 0.65503 1 0.037407 1 0.026593 1 0.17828 1 0.2383 1 0.18105 1 0.006028 1 4q gain 18 (7%) 232 0.056614 1 0.051378 1 0.56884 1 0.16106 1 0.048037 1 0.060185 1 0.25253 1 0.33592 1 0.46807 1 0.42048 1 5p gain 103 (41%) 147 2.7263e-05 0.0213 0.59873 1 0.042189 1 0.23652 1 0.29037 1 0.018269 1 0.13813 1 0.031236 1 0.26305 1 0.031275 1 5q gain 36 (14%) 214 0.0043303 1 0.20743 1 0.017213 1 0.6593 1 0.63968 1 0.67321 1 0.11511 1 0.054861 1 0.031936 1 0.29026 1 6p gain 40 (16%) 210 0.069455 1 0.75992 1 0.78563 1 0.17723 1 0.34923 1 0.50338 1 0.52972 1 0.053595 1 0.69612 1 0.65949 1 6q gain 22 (9%) 228 0.34624 1 0.6738 1 0.93387 1 0.10051 1 0.13781 1 0.2882 1 0.29976 1 0.095179 1 0.51339 1 0.70703 1 7p gain 108 (43%) 142 0.00021316 0.164 0.023436 1 0.023214 1 0.8579 1 0.8397 1 0.4105 1 0.069903 1 0.08106 1 0.3766 1 0.3853 1 7q gain 96 (38%) 154 0.0012529 0.942 0.038842 1 0.18279 1 0.91694 1 0.67812 1 0.37392 1 0.14405 1 0.044719 1 0.30787 1 0.30327 1 8p gain 51 (20%) 199 1.4278e-06 0.00113 0.034663 1 0.052866 1 0.060078 1 0.49262 1 0.32376 1 0.7326 1 0.33274 1 0.52724 1 0.21646 1 8q gain 111 (44%) 139 0.0074178 1 0.10828 1 0.050441 1 0.15862 1 0.75162 1 0.75856 1 0.69514 1 0.86152 1 0.43631 1 0.14448 1 9p gain 37 (15%) 213 1.8625e-05 0.0146 0.7907 1 0.63054 1 0.61448 1 0.12921 1 0.019881 1 0.3456 1 1 1 0.93925 1 0.52777 1 9q gain 32 (13%) 218 0.057461 1 0.03531 1 0.77611 1 0.031492 1 0.0047321 1 0.0036943 1 0.90879 1 0.53184 1 0.52026 1 0.084541 1 10p gain 74 (30%) 176 1.2023e-09 9.62e-07 0.59107 1 0.80393 1 0.58579 1 0.90496 1 0.21592 1 0.52364 1 0.52742 1 0.96581 1 0.90192 1 10q gain 23 (9%) 227 0.023773 1 0.44192 1 0.43593 1 0.32207 1 0.802 1 0.1459 1 0.2661 1 1 1 0.56426 1 0.87067 1 11p gain 23 (9%) 227 0.027513 1 0.16656 1 0.18064 1 0.094687 1 0.057037 1 0.036158 1 0.66082 1 0.30358 1 0.49505 1 0.052935 1 11q gain 33 (13%) 217 0.024283 1 0.13596 1 0.15168 1 0.016144 1 0.14848 1 0.033109 1 0.92734 1 0.4631 1 0.43011 1 0.039175 1 12p gain 73 (29%) 177 0.0026888 1 0.16894 1 0.67651 1 0.41252 1 0.93384 1 1 1 1 1 0.014365 1 0.97543 1 0.21569 1 12q gain 52 (21%) 198 0.0074535 1 0.045913 1 0.099148 1 0.024059 1 0.18992 1 0.26389 1 0.40635 1 0.11759 1 0.48217 1 0.081948 1 13q gain 64 (26%) 186 0.10075 1 0.73937 1 0.9658 1 0.84988 1 0.1395 1 0.90093 1 0.66863 1 0.52304 1 1 1 0.53781 1 14q gain 41 (16%) 209 0.004339 1 0.080013 1 0.36381 1 0.52524 1 0.043307 1 0.026593 1 0.90143 1 0.42968 1 0.5183 1 0.96172 1 15q gain 23 (9%) 227 0.50107 1 0.011885 1 0.5764 1 0.39613 1 0.93007 1 0.23052 1 0.37271 1 0.82076 1 1 1 1 1 16p gain 42 (17%) 208 0.0060264 1 0.90106 1 0.2808 1 0.63574 1 0.89374 1 0.40447 1 0.44581 1 0.73044 1 0.5284 1 1 1 16q gain 51 (20%) 199 0.0098823 1 0.44051 1 0.098604 1 0.43829 1 0.44668 1 0.080871 1 0.32423 1 1 1 0.16942 1 0.53449 1 17p gain 34 (14%) 216 0.021242 1 0.06591 1 0.47539 1 0.71398 1 0.85272 1 0.42481 1 0.0012465 0.939 0.00018673 0.144 0.0032083 1 0.00050548 0.385 17q gain 84 (34%) 166 0.018089 1 0.0085355 1 0.45107 1 0.52831 1 0.24261 1 0.19493 1 0.074783 1 0.0105 1 0.0048637 1 0.013997 1 18p gain 76 (30%) 174 5.8264e-09 4.66e-06 0.003863 1 0.93523 1 0.82409 1 0.10235 1 0.059125 1 0.68804 1 0.034913 1 0.61054 1 0.97853 1 18q gain 39 (16%) 211 0.00030561 0.234 0.0064778 1 0.44039 1 0.23598 1 0.60628 1 0.21434 1 0.67865 1 0.25105 1 0.50741 1 0.88646 1 19p gain 49 (20%) 201 0.26915 1 0.1213 1 0.28592 1 0.56501 1 0.057527 1 0.15009 1 0.19674 1 0.040511 1 0.57738 1 0.19381 1 19q gain 84 (34%) 166 0.0008523 0.646 0.048627 1 0.29433 1 0.66619 1 0.39048 1 0.2115 1 0.33422 1 0.043874 1 0.79595 1 0.37501 1 20p gain 126 (50%) 124 0.0048313 1 0.030934 1 0.51615 1 0.043306 1 0.83372 1 0.090762 1 0.088345 1 0.14026 1 0.008779 1 0.10964 1 20q gain 140 (56%) 110 0.00079943 0.607 0.057861 1 0.37404 1 0.1527 1 1 1 0.20831 1 0.060728 1 0.02884 1 0.043 1 0.30164 1 21q gain 75 (30%) 175 5.0457e-05 0.0392 0.024014 1 0.6136 1 0.56751 1 0.096354 1 0.065153 1 0.00041037 0.314 0.000199 0.153 0.017566 1 0.0025862 1 22q gain 35 (14%) 215 7.9192e-05 0.0613 0.0031182 1 0.47537 1 0.61956 1 0.041552 1 0.15005 1 0.2 1 0.23152 1 0.58127 1 0.35755 1 xq gain 30 (12%) 220 0.10314 1 0.084791 1 0.40091 1 0.84757 1 0.73813 1 0.43438 1 0.44482 1 1 1 0.62271 1 0.60029 1 1p loss 20 (8%) 230 0.020273 1 1 1 0.13931 1 0.11778 1 0.802 1 0.1459 1 0.43712 1 0.15706 1 0.92129 1 0.69413 1 1q loss 22 (9%) 228 0.003316 1 0.91482 1 0.56914 1 1 1 0.63954 1 0.14545 1 0.6009 1 0.54145 1 0.82721 1 0.91948 1 2p loss 25 (10%) 225 0.0051831 1 0.12256 1 0.84127 1 0.75914 1 0.76965 1 0.20243 1 0.20276 1 0.57228 1 0.46283 1 0.28399 1 2q loss 57 (23%) 193 2.4031e-05 0.0188 0.038103 1 0.60206 1 0.30838 1 0.18456 1 0.068993 1 0.65338 1 0.3278 1 0.16811 1 0.034073 1 3p loss 29 (12%) 221 0.0023732 1 0.061541 1 0.052267 1 0.017512 1 2.1304e-06 0.00169 1.3324e-05 0.0105 0.67103 1 0.45401 1 0.26812 1 0.011695 1 3q loss 13 (5%) 237 0.12595 1 0.30806 1 0.0015852 1 0.012318 1 0.026157 1 0.020493 1 1 1 1 1 0.90126 1 0.18533 1 4p loss 84 (34%) 166 0.00011419 0.0883 0.45047 1 0.57059 1 0.4469 1 0.072039 1 0.039002 1 0.11893 1 0.70645 1 0.16004 1 0.043255 1 4q loss 86 (34%) 164 6.1289e-06 0.00483 0.17544 1 0.19386 1 0.25037 1 0.069181 1 0.053324 1 0.22178 1 0.43414 1 0.092554 1 0.032603 1 5p loss 39 (16%) 211 0.64155 1 0.71639 1 0.3905 1 0.60205 1 0.87409 1 0.19066 1 0.84859 1 0.85979 1 0.5409 1 0.75175 1 5q loss 100 (40%) 150 0.0010408 0.786 0.19214 1 0.82414 1 0.2922 1 0.098571 1 0.0038573 1 0.93463 1 0.54019 1 0.49301 1 0.32067 1 6p loss 61 (24%) 189 0.096394 1 0.00062926 0.478 0.76575 1 0.83549 1 0.2389 1 0.0073822 1 0.62482 1 0.75743 1 0.70308 1 0.11508 1 6q loss 93 (37%) 157 1.8598e-06 0.00147 0.00042107 0.322 0.83686 1 0.55942 1 0.54479 1 0.012128 1 0.79862 1 0.71055 1 0.89615 1 0.3986 1 7p loss 10 (4%) 240 0.68752 1 0.77199 1 0.38457 1 0.92436 1 1 1 0.64516 1 0.41719 1 0.013774 1 0.27892 1 0.82962 1 7q loss 15 (6%) 235 0.2455 1 0.79975 1 0.31231 1 0.83346 1 0.94298 1 0.90073 1 0.38833 1 0.0012748 0.957 1 1 0.93807 1 8p loss 113 (45%) 137 1.4856e-07 0.000118 0.10357 1 0.13643 1 0.072736 1 0.038719 1 0.018678 1 0.0083144 1 0.03551 1 0.05037 1 0.0059504 1 8q loss 27 (11%) 223 0.42386 1 0.26953 1 0.33332 1 0.016695 1 0.054177 1 0.042897 1 0.0088055 1 0.42566 1 0.0097109 1 0.0032188 1 9p loss 109 (44%) 141 3.3021e-05 0.0257 0.20122 1 0.28284 1 0.075235 1 0.69026 1 0.021777 1 0.83499 1 0.20195 1 0.78239 1 0.94683 1 9q loss 99 (40%) 151 0.16073 1 0.0063516 1 0.031935 1 0.0070133 1 0.029792 1 2.3851e-05 0.0187 1 1 0.75639 1 0.4707 1 0.50928 1 10p loss 46 (18%) 204 0.00049214 0.375 0.016045 1 0.78813 1 0.50973 1 0.039972 1 0.092496 1 0.08383 1 0.041562 1 0.28601 1 0.12006 1 10q loss 83 (33%) 167 6.4738e-06 0.00509 0.0022242 1 0.47855 1 0.7918 1 0.11172 1 0.22214 1 0.29029 1 0.32205 1 0.29113 1 0.43177 1 11p loss 104 (42%) 146 2.3891e-06 0.00189 3.546e-07 0.000282 0.25041 1 0.5163 1 0.013985 1 0.0011765 0.887 0.038341 1 0.090357 1 0.0046913 1 0.031138 1 11q loss 77 (31%) 173 8.5732e-06 0.00674 2.9338e-05 0.0229 0.068598 1 0.069793 1 0.041385 1 0.037332 1 0.3302 1 0.2097 1 0.084896 1 0.070458 1 12p loss 25 (10%) 225 0.057299 1 0.15693 1 0.87047 1 0.40987 1 0.57736 1 0.65368 1 0.40684 1 0.61406 1 0.75206 1 0.9418 1 12q loss 32 (13%) 218 0.047747 1 0.83752 1 0.33332 1 0.54173 1 0.72122 1 0.29605 1 0.72328 1 0.69123 1 0.85555 1 0.81826 1 13q loss 53 (21%) 197 0.0002714 0.208 0.41214 1 0.0057349 1 0.029168 1 0.087847 1 0.56482 1 0.90054 1 0.35964 1 0.9711 1 0.25929 1 14q loss 74 (30%) 176 3.9303e-07 0.000312 0.11172 1 0.1183 1 0.04804 1 0.068327 1 0.00046775 0.357 0.0088847 1 0.073881 1 0.010907 1 0.40637 1 15q loss 85 (34%) 165 7.0976e-05 0.055 0.0032998 1 0.099887 1 0.28902 1 0.13853 1 0.015227 1 0.085301 1 0.052355 1 0.046829 1 0.44032 1 16p loss 64 (26%) 186 5.4577e-08 4.35e-05 0.092695 1 0.57474 1 0.39261 1 0.25066 1 0.83125 1 0.93513 1 0.53702 1 0.46857 1 0.9159 1 16q loss 58 (23%) 192 9.0583e-09 7.23e-06 0.03425 1 0.2372 1 0.91196 1 0.86707 1 0.91543 1 0.73056 1 0.44715 1 0.73858 1 0.37233 1 17p loss 109 (44%) 141 0.06221 1 0.25931 1 0.94721 1 0.36173 1 0.26267 1 0.69676 1 0.38097 1 0.43648 1 0.29103 1 0.077917 1 17q loss 27 (11%) 223 0.68346 1 0.16488 1 0.89605 1 0.7828 1 0.68117 1 0.74756 1 0.79081 1 0.33864 1 0.81423 1 0.60575 1 18p loss 57 (23%) 193 0.019267 1 0.56902 1 0.45951 1 0.27403 1 0.83568 1 0.25482 1 0.51699 1 0.16243 1 0.61866 1 0.31775 1 18q loss 86 (34%) 164 0.0036452 1 0.73685 1 0.54794 1 0.84045 1 0.75031 1 0.93182 1 0.042887 1 0.017243 1 0.040488 1 0.34814 1 19p loss 64 (26%) 186 0.043332 1 0.42367 1 0.68027 1 0.40403 1 0.019005 1 0.068783 1 1 1 0.49803 1 0.67217 1 0.29877 1 19q loss 39 (16%) 211 0.2084 1 0.88351 1 0.20763 1 0.1008 1 0.25131 1 0.44757 1 0.22833 1 0.67762 1 0.29093 1 0.16869 1 20p loss 20 (8%) 230 0.14416 1 0.15393 1 0.25852 1 0.035186 1 0.9182 1 0.43708 1 0.83858 1 1 1 0.28562 1 0.48278 1 20q loss 8 (3%) 242 0.41001 1 0.71628 1 0.33077 1 0.28698 1 0.55736 1 0.79078 1 0.59263 1 0.80863 1 1 1 0.44005 1 21q loss 41 (16%) 209 0.47863 1 0.52698 1 0.11418 1 0.18894 1 0.0093637 1 0.11577 1 0.56728 1 0.24444 1 0.65255 1 0.1806 1 22q loss 97 (39%) 153 1.5988e-05 0.0125 0.0066964 1 0.54841 1 0.015487 1 0.0067619 1 0.013059 1 0.71564 1 0.55561 1 0.060838 1 0.058597 1 xq loss 48 (19%) 202 0.0017455 1 0.025457 1 0.98127 1 1 1 0.15546 1 0.47073 1 0.082221 1 0.72935 1 0.036079 1 0.16707 1