Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p34.2	68 (27%)	182	0.00022355	0.141	0.23309	1	0.1535	1	0.60941	1	0.903	1	0.50901	1	0.088947	1	0.72088	1	0.89017	1	0.72961	1
amp_1q21.3	123 (49%)	127	7.2097e-13	4.96e-10	0.031812	1	0.3678	1	0.48632	1	0.012857	1	0.05706	1	0.11062	1	0.15133	1	0.38106	1	0.14043	1
amp_1q23.3	129 (52%)	121	8.3928e-09	5.7e-06	0.015344	1	0.5175	1	0.45193	1	0.089821	1	0.48621	1	0.0015485	0.952	0.001087	0.674	0.027859	1	0.012547	1
amp_3p25.2	122 (49%)	128	2.1554e-11	1.48e-08	0.0025782	1	0.077215	1	0.025556	1	1.9751e-05	0.0127	2.7011e-05	0.0174	8.4e-05	0.0535	0.0016481	1	1.703e-05	0.011	0.00017858	0.113
amp_3q26.32	136 (54%)	114	3.6443e-05	0.0234	0.75378	1	0.38912	1	0.1622	1	0.52082	1	0.43392	1	0.38982	1	0.051007	1	0.29983	1	0.10624	1
amp_4p16.3	52 (21%)	198	0.20721	1	0.0067387	1	0.027455	1	0.0082722	1	0.0034907	1	0.0016605	1	0.015973	1	0.016912	1	0.0084706	1	0.00814	1
amp_4q13.3	45 (18%)	205	0.00039587	0.247	0.025408	1	0.49905	1	0.8061	1	0.36791	1	0.33869	1	0.37172	1	0.21874	1	0.16873	1	0.1183	1
amp_5p15.33	128 (51%)	122	1.3515e-08	9.14e-06	0.21477	1	0.024077	1	0.045225	1	0.34798	1	0.022785	1	0.0584	1	0.047185	1	0.30494	1	0.015689	1
amp_6p22.3	107 (43%)	143	1.2282e-13	8.46e-11	0.11586	1	0.29919	1	0.53628	1	1	1	0.83408	1	0.34973	1	0.078315	1	0.48115	1	0.60885	1
amp_6q21	23 (9%)	227	0.27243	1	0.53971	1	0.45149	1	0.1951	1	0.44116	1	0.20908	1	0.52897	1	0.60788	1	0.68711	1	0.72495	1
amp_7p21.1	130 (52%)	120	7.2001e-08	4.82e-05	0.066959	1	0.12828	1	0.7167	1	0.6868	1	0.42471	1	0.16439	1	0.13483	1	0.70091	1	0.69915	1
amp_7p11.2	127 (51%)	123	1.0354e-07	6.91e-05	0.054856	1	0.087183	1	0.94347	1	0.77034	1	0.7172	1	0.26972	1	0.51523	1	0.63938	1	0.70165	1
amp_8p11.23	77 (31%)	173	1.6711e-05	0.0108	0.19002	1	0.7113	1	0.8172	1	0.97012	1	0.96338	1	0.48736	1	0.60422	1	0.24857	1	0.36009	1
amp_8q22.3	160 (64%)	90	0.0019825	1	0.020022	1	0.024726	1	0.12754	1	0.48008	1	0.47062	1	0.056471	1	0.1971	1	0.0056247	1	0.064907	1
amp_9p24.1	49 (20%)	201	1.8455e-06	0.00121	0.42437	1	0.58141	1	0.49932	1	0.059382	1	0.0064144	1	0.88594	1	1	1	0.78145	1	0.33081	1
amp_10p14	112 (45%)	138	2.513e-16	1.73e-13	0.15854	1	0.33145	1	0.40648	1	0.84207	1	0.13633	1	0.33728	1	0.32423	1	0.37567	1	0.4671	1
amp_11q13.3	95 (38%)	155	2.3464e-08	1.58e-05	0.47324	1	0.23673	1	0.068456	1	0.17961	1	1	1	0.12508	1	0.17134	1	0.47935	1	0.84773	1
amp_11q22.2	46 (18%)	204	0.0092372	1	0.60596	1	0.64119	1	0.27579	1	0.094571	1	0.074823	1	0.065733	1	0.0075478	1	0.063079	1	0.16731	1
amp_12p13.32	87 (35%)	163	2.8321e-06	0.00185	0.12653	1	0.76147	1	0.7235	1	0.7478	1	0.74156	1	0.96701	1	0.001192	0.737	0.88836	1	0.34355	1
amp_12q15	75 (30%)	175	0.00087483	0.544	0.20701	1	0.049693	1	0.027031	1	0.10821	1	0.10586	1	0.10841	1	0.011122	1	0.08347	1	0.0035399	1
amp_13q22.1	77 (31%)	173	0.051932	1	0.55976	1	0.96205	1	0.87083	1	0.88069	1	0.69381	1	0.31877	1	0.66485	1	0.71291	1	0.45094	1
amp_14q11.2	60 (24%)	190	0.00021455	0.135	0.15779	1	0.52425	1	0.22277	1	0.10368	1	0.01069	1	0.30687	1	0.42373	1	0.65591	1	0.3825	1
amp_16p13.13	56 (22%)	194	0.0065113	1	0.58802	1	0.46229	1	0.8273	1	0.21834	1	0.77988	1	0.78962	1	0.83935	1	0.66838	1	0.44375	1
amp_16q22.1	74 (30%)	176	1.4327e-05	0.00928	0.55123	1	0.069992	1	0.47045	1	0.078013	1	0.040152	1	0.6091	1	0.080978	1	0.26479	1	0.65039	1
amp_17q11.2	111 (44%)	139	8.516e-07	0.000562	2.4468e-05	0.0158	0.033754	1	0.075348	1	0.00032782	0.206	0.0016186	0.991	0.020654	1	0.16089	1	0.00088632	0.55	0.0015994	0.98
amp_17q12	103 (41%)	147	0.00021382	0.135	0.0061363	1	0.076537	1	0.01662	1	0.016097	1	0.10195	1	0.0016212	0.991	0.019002	1	0.0015728	0.966	0.0020046	1
amp_19q12	104 (42%)	146	5.9326e-07	0.000393	0.049162	1	0.7214	1	0.80466	1	0.35791	1	0.20847	1	0.28585	1	0.070459	1	0.57798	1	0.20812	1
amp_19q13.43	97 (39%)	153	6.3671e-06	0.00415	0.012803	1	0.18508	1	0.33725	1	0.56674	1	0.9457	1	0.63682	1	0.035911	1	0.30115	1	0.022254	1
amp_20q11.21	163 (65%)	87	6.9066e-07	0.000457	0.076779	1	0.68802	1	0.068908	1	1	1	0.30254	1	0.1272	1	0.072513	1	0.1211	1	0.48836	1
amp_22q11.23	52 (21%)	198	1.287e-06	0.000846	0.0067387	1	0.56791	1	0.5608	1	0.10147	1	0.12718	1	0.11118	1	0.65473	1	0.50302	1	0.28142	1
del_1p36.11	49 (20%)	201	0.63837	1	0.27793	1	0.33517	1	0.027003	1	0.052558	1	0.17159	1	0.87748	1	0.38515	1	0.64257	1	0.74037	1
del_1p21.3	42 (17%)	208	0.023981	1	0.076445	1	0.34465	1	0.93705	1	0.44094	1	0.016494	1	0.30608	1	0.21679	1	0.7636	1	0.45816	1
del_1q32.1	45 (18%)	205	0.22637	1	0.67224	1	0.42609	1	0.61448	1	0.50935	1	0.013367	1	0.19524	1	0.32713	1	0.15351	1	0.31128	1
del_2q22.1	78 (31%)	172	0.00014388	0.0914	0.087139	1	0.2489	1	0.52859	1	0.25213	1	0.065978	1	0.23064	1	0.68014	1	0.054981	1	0.28281	1
del_2q37.1	126 (50%)	124	2.8135e-08	1.89e-05	0.0012456	0.769	0.56517	1	0.28621	1	0.45905	1	0.079931	1	0.094249	1	0.11337	1	0.052709	1	0.051884	1
del_3p21.31	72 (29%)	178	1.277e-06	0.00084	0.26027	1	0.029599	1	0.031052	1	7.9822e-06	0.0052	0.010288	1	0.23573	1	0.14716	1	0.46343	1	0.15912	1
del_3p14.2	71 (28%)	179	2.1842e-08	1.47e-05	0.41777	1	0.041273	1	0.031973	1	8.0409e-05	0.0513	0.036998	1	0.64338	1	0.41128	1	0.34287	1	0.14439	1
del_3p13	66 (26%)	184	3.8089e-07	0.000253	0.39535	1	0.15576	1	0.0048923	1	4.2838e-05	0.0274	0.070559	1	0.84022	1	0.91202	1	0.45693	1	0.020834	1
del_4q22.1	105 (42%)	145	0.00020013	0.127	0.10911	1	0.51295	1	0.42078	1	0.032661	1	0.036728	1	0.43826	1	0.69428	1	0.048138	1	0.075028	1
del_4q34.2	113 (45%)	137	3.6363e-07	0.000242	0.59424	1	0.429	1	0.91052	1	0.70736	1	0.36338	1	0.074448	1	0.15363	1	0.19097	1	0.16603	1
del_5q11.2	128 (51%)	122	3.7091e-09	2.52e-06	0.13151	1	0.95382	1	0.30411	1	0.50764	1	0.30402	1	0.31608	1	0.64225	1	0.61737	1	0.30349	1
del_6p25.3	67 (27%)	183	7.0584e-05	0.0451	0.068058	1	0.80802	1	0.66231	1	0.64063	1	0.12221	1	0.5133	1	0.88182	1	0.83684	1	0.74842	1
del_6q21	111 (44%)	139	2.3204e-09	1.58e-06	0.015706	1	0.84261	1	0.62742	1	0.87121	1	0.071568	1	0.37414	1	0.56892	1	0.33699	1	0.42542	1
del_6q27	113 (45%)	137	3.5398e-10	2.42e-07	0.0025011	1	0.6573	1	0.62742	1	0.63385	1	0.036153	1	0.10586	1	0.13933	1	0.18226	1	0.32343	1
del_7q36.3	38 (15%)	212	0.14274	1	0.11697	1	0.28655	1	0.22189	1	0.15086	1	0.38932	1	0.58013	1	0.10964	1	0.84156	1	0.73955	1
del_8p23.3	143 (57%)	107	2.8921e-10	1.98e-07	0.0092341	1	0.5227	1	0.23106	1	0.077263	1	0.13294	1	0.0022777	1	0.07271	1	0.043117	1	0.0097598	1
del_8p12	123 (49%)	127	1.2154e-08	8.23e-06	0.075026	1	0.54829	1	0.50718	1	0.097979	1	0.37937	1	0.044612	1	0.031727	1	0.19161	1	0.034017	1
del_8p11.21	66 (26%)	184	1.0941e-05	0.0071	0.71656	1	0.21722	1	0.10784	1	0.21291	1	0.029347	1	0.14762	1	0.82723	1	0.14587	1	0.015411	1
del_9p23	112 (45%)	138	3.8064e-06	0.00249	0.53921	1	0.20426	1	0.13667	1	0.95699	1	0.11728	1	0.48477	1	0.37198	1	0.63987	1	0.78316	1
del_9p21.3	148 (59%)	102	1.1975e-06	0.000789	0.97036	1	0.41453	1	0.002493	1	0.70752	1	0.51746	1	0.76875	1	0.51356	1	0.57592	1	0.79122	1
del_9q33.2	99 (40%)	151	0.39832	1	0.0078217	1	0.073021	1	0.0025663	1	0.027675	1	9.4822e-05	0.0603	0.39111	1	0.32035	1	0.071356	1	0.24332	1
del_10p12.1	40 (16%)	210	0.00055327	0.345	0.061378	1	0.76929	1	0.64629	1	0.0093637	1	0.12723	1	0.28568	1	0.064021	1	0.54435	1	0.46419	1
del_10q23.31	100 (40%)	150	4.9082e-07	0.000325	0.016541	1	0.60028	1	0.73488	1	0.26449	1	0.46808	1	0.65571	1	0.34314	1	0.74795	1	0.66368	1
del_10q26.13	102 (41%)	148	1.9025e-07	0.000127	0.02828	1	0.384	1	0.66231	1	0.46324	1	0.39269	1	0.41238	1	0.37138	1	0.36564	1	0.47572	1
del_11p15.5	123 (49%)	127	3.6991e-08	2.48e-05	0.00027552	0.173	0.34812	1	0.76744	1	0.073392	1	0.0017905	1	0.0049222	1	0.0052283	1	0.0037603	1	0.037166	1
del_11q25	91 (36%)	159	1.0321e-07	6.89e-05	0.0041216	1	0.8528	1	0.78537	1	0.12313	1	0.037081	1	0.69011	1	0.10406	1	0.26891	1	0.41141	1
del_13q14.2	100 (40%)	150	9.8532e-09	6.68e-06	0.63257	1	0.0084927	1	0.0034251	1	0.012963	1	0.13253	1	0.87996	1	0.21376	1	0.55122	1	0.73064	1
del_14q12	79 (32%)	171	1.8575e-08	1.25e-05	0.36622	1	0.14877	1	0.090614	1	0.16493	1	0.0018125	1	0.066279	1	0.24125	1	0.064451	1	0.24812	1
del_14q24.1	83 (33%)	167	3.2887e-09	2.24e-06	0.020186	1	0.43243	1	0.35455	1	0.014775	1	8.0068e-06	0.0052	0.049704	1	0.35511	1	0.055273	1	0.23385	1
del_15q13.1	103 (41%)	147	2.0069e-06	0.00131	0.01165	1	0.28639	1	0.45044	1	0.82585	1	0.1467	1	0.13382	1	0.17999	1	0.25135	1	0.32562	1
del_16p13.3	99 (40%)	151	7.1301e-10	4.87e-07	0.12868	1	0.19248	1	0.20368	1	0.72978	1	0.57173	1	0.92218	1	0.75136	1	0.58886	1	0.71834	1
del_16q23.1	69 (28%)	181	4.9111e-08	3.29e-05	0.011152	1	0.42666	1	0.10987	1	0.22468	1	0.52551	1	0.035372	1	0.39268	1	0.10397	1	0.12604	1
del_17p12	130 (52%)	120	2.8145e-05	0.0181	0.019149	1	0.20054	1	0.44808	1	0.34761	1	0.067999	1	0.61075	1	0.82859	1	0.73585	1	0.48592	1
del_18q21.2	110 (44%)	140	0.0013276	0.818	0.7019	1	0.86248	1	0.98246	1	0.82684	1	0.84754	1	0.0039298	1	0.0022262	1	0.023005	1	0.17232	1
del_18q23	104 (42%)	146	0.00081983	0.511	0.55137	1	0.59924	1	1	1	1	1	0.9397	1	0.00113	0.699	0.00033054	0.207	0.0052266	1	0.11059	1
del_19p13.3	93 (37%)	157	0.00029543	0.186	0.75716	1	0.86494	1	0.81296	1	0.088846	1	0.32075	1	0.49815	1	0.30509	1	0.26787	1	0.39146	1
del_22q13.31	114 (46%)	136	1.3345e-10	9.15e-08	0.0085948	1	0.42003	1	0.018063	1	0.011094	1	0.0063074	1	0.97103	1	0.53793	1	0.091172	1	0.19846	1
del_xp11.3	57 (23%)	193	0.0068415	1	0.36674	1	0.64437	1	0.71809	1	0.40794	1	0.96129	1	0.11009	1	0.44936	1	0.11803	1	0.53746	1
del_xq21.33	50 (20%)	200	0.010212	1	0.009568	1	0.98102	1	0.097354	1	0.017726	1	0.60852	1	0.030968	1	0.8337	1	0.056455	1	0.090345	1