Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
PIK3CA	26 (20%)	104	0.22013	1	0.79711	1	0.16666	1	0.78427	1	0.36284	1	0.26888	1	0.65596	1	0.053422	1	0.4557	1	0.54749	1
TP53	64 (49%)	66	0.071235	1	0.23291	1	0.040864	1	0.013021	1	0.10323	1	0.26055	1	0.41452	1	0.58909	1	0.23701	1	0.32529	1
CDKN1A	18 (14%)	112	0.24562	1	0.4987	1	0.86127	1	0.49099	1	0.92302	1	0.77525	1	0.86776	1	0.91105	1	0.53931	1	0.53799	1
RB1	17 (13%)	113	0.020941	1	0.33055	1	0.51813	1	0.11538	1	0.50082	1	0.62783	1	0.66064	1	1	1	0.20055	1	0.32948	1
ARID1A	32 (25%)	98	0.78964	1	0.75307	1	0.61382	1	0.20968	1	0.57544	1	0.50068	1	0.050555	1	0.14504	1	0.23486	1	0.18469	1
MLL2	36 (28%)	94	0.29318	1	0.65959	1	0.36876	1	0.20492	1	0.24489	1	0.62148	1	0.53798	1	0.81414	1	0.4732	1	0.64783	1
FBXW7	13 (10%)	117	0.90994	1	0.026491	1	0.38508	1	0.3489	1	0.089457	1	0.13867	1	0.21182	1	0.16731	1	0.014527	1	0.11997	1
KDM6A	31 (24%)	99	0.34454	1	0.94192	1	0.36216	1	0.19346	1	0.51381	1	0.88623	1	0.14168	1	0.19474	1	0.77947	1	0.20093	1
ELF3	11 (8%)	119	0.76123	1	0.023284	1	0.63112	1	0.58544	1	0.67403	1	0.15402	1	0.48182	1	0.6625	1	0.7802	1	0.42162	1
FGFR3	16 (12%)	114	0.54977	1	0.11921	1	0.06213	1	0.023781	1	0.080088	1	0.011359	1	0.28873	1	0.60892	1	0.011726	1	0.031815	1
FOXQ1	7 (5%)	123	0.48953	1	0.40996	1	0.48579	1	0.29488	1	0.72107	1	0.89083	1	0.25321	1	0.80511	1	0.4663	1	0.5683	1
STAG2	14 (11%)	116	0.38726	1	0.17349	1	0.23982	1	0.54709	1	0.37403	1	0.12743	1	0.27845	1	0.63557	1	0.12659	1	0.012336	1
NFE2L2	11 (8%)	119	0.23264	1	0.2116	1	0.48371	1	0.6717	1	0.082155	1	0.23238	1	0.85327	1	0.28771	1	1	1	0.6899	1
CDKN2A	7 (5%)	123	0.36974	1	0.5231	1	0.35585	1	0.11085	1	1	1	0.89083	1	0.41875	1	0.80511	1	0.4663	1	1	1
KLF5	10 (8%)	120	0.71099	1	0.76783	1	0.3773	1	0.31746	1	0.9157	1	0.12949	1	0.76539	1	0.86851	1	0.35219	1	0.024552	1
ASXL2	9 (7%)	121	0.32609	1	0.48997	1	0.42058	1	0.19352	1	0.6179	1	0.37436	1	0.75635	1	0.84477	1	0.14719	1	0.50583	1
TSC1	11 (8%)	119	0.51058	1	0.50962	1	0.34553	1	0.13938	1	0.34301	1	0.019765	1	0.52134	1	0.6625	1	0.66112	1	0.13502	1
ERCC2	16 (12%)	114	0.89687	1	0.60437	1	0.13864	1	0.044199	1	0.13427	1	0.21868	1	0.1759	1	0.39204	1	0.87149	1	1	1
TXNIP	9 (7%)	121	0.66014	1	0.90998	1	0.7956	1	0.43927	1	0.5617	1	0.49468	1	1	1	0.071266	1	0.48762	1	1	1
EP300	21 (16%)	109	0.59401	1	0.45457	1	0.45028	1	0.58718	1	0.52543	1	0.79654	1	0.30197	1	0.63045	1	0.33665	1	0.33719	1
RXRA	12 (9%)	118	0.83709	1	0.060992	1	0.18118	1	1	1	0.73965	1	0.14709	1	0.46672	1	0.20378	1	0.85593	1	0.45601	1
FOXA1	7 (5%)	123	0.40339	1	0.60786	1	0.66767	1	0.84966	1	0.36756	1	0.54325	1	0.69999	1	1	1	0.6874	1	0.6539	1
PHLDA3	4 (3%)	126	0.46681	1	0.52978	1	0.50764	1	0.51039	1	0.21862	1	0.35642	1	0.68316	1	1	1	0.83344	1	0.38556	1