Clinical Features	Time to Death		AGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		PATHOLOGY.M.STAGE		HISTOLOGICAL.TYPE		RADIATIONS.RADIATION.REGIMENINDICATION		NUMBERPACKYEARSSMOKED		NUMBER.OF.LYMPH.NODES	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q
1p gain	45 (30%)	105	0.83989	1	0.11607	1	0.49446	1	0.65513	1	0.67998	1	0.28411	1	1	1	0.39996	1	0.34985	1
1q gain	73 (49%)	77	0.54887	1	0.68672	1	0.21037	1	0.68307	1	0.72913	1	0.91563	1	0.27419	1	0.89876	1	0.60013	1
2p gain	26 (17%)	124	0.14434	1	0.32903	1	1	1	1	1	0.86721	1	0.51081	1	1	1	0.57275	1	0.92041	1
2q gain	18 (12%)	132	0.0073688	1	0.4102	1	1	1	0.72713	1	1	1	0.84147	1	0.73874	1	NA	NA	0.65063	1
3p gain	37 (25%)	113	0.021533	1	0.28051	1	1	1	0.61821	1	1	1	0.16284	1	0.4454	1	0.4319	1	0.11738	1
3q gain	89 (59%)	61	0.47452	1	0.83238	1	0.67362	1	0.065793	1	0.093903	1	0.082031	1	0.025485	1	0.54258	1	0.013445	1
4p gain	3 (2%)	147	NA	NA	0.19255	1	NA	NA	0.33028	1	NA	NA	0.98601	1	0.42364	1	NA	NA	NA	NA
4q gain	4 (3%)	146	0.84994	1	0.02445	1	0.55718	1	0.25308	1	0.16566	1	0.95457	1	1	1	NA	NA	0.55099	1
5p gain	51 (34%)	99	0.62996	1	0.2839	1	0.64146	1	0.50052	1	0.73713	1	0.33283	1	0.35512	1	0.28652	1	0.59352	1
5q gain	22 (15%)	128	0.38694	1	0.17004	1	1	1	1	1	0.59852	1	0.778	1	1	1	0.57339	1	0.44016	1
6p gain	31 (21%)	119	0.49805	1	0.82338	1	0.59712	1	1	1	0.25971	1	0.86756	1	0.41584	1	0.7643	1	0.52379	1
6q gain	17 (11%)	133	0.15317	1	0.89112	1	0.50301	1	1	1	0.1107	1	0.72725	1	0.16374	1	0.46126	1	0.31607	1
7p gain	16 (11%)	134	0.96776	1	0.31798	1	0.26907	1	1	1	1	1	0.87767	1	0.73179	1	NA	NA	0.57651	1
7q gain	15 (10%)	135	0.29436	1	0.097578	1	0.72222	1	1	1	0.8086	1	0.6242	1	0.1346	1	NA	NA	0.068191	1
8p gain	24 (16%)	126	0.44807	1	0.022329	1	0.56145	1	1	1	1	1	0.80177	1	0.55481	1	0.67955	1	0.52178	1
8q gain	41 (27%)	109	0.75666	1	0.036575	1	1	1	0.81655	1	0.55576	1	0.25273	1	0.46533	1	0.2893	1	0.94137	1
9p gain	18 (12%)	132	0.94506	1	0.97345	1	0.51298	1	0.34896	1	1	1	0.91727	1	0.31028	1	0.43428	1	0.70038	1
9q gain	20 (13%)	130	0.98236	1	0.81455	1	0.53441	1	0.54345	1	1	1	0.75256	1	0.19914	1	0.68732	1	0.70038	1
10p gain	11 (7%)	139	0.69174	1	0.39296	1	0.44148	1	0.15312	1	0.60774	1	0.96901	1	1	1	NA	NA	0.342	1
10q gain	6 (4%)	144	0.81443	1	0.45971	1	0.31757	1	0.59753	1	0.20982	1	0.98669	1	1	1	NA	NA	0.50771	1
11p gain	4 (3%)	146	0.25511	1	0.089951	1	0.021184	1	0.25308	1	1	1	0.23871	1	0.52166	1	NA	NA	0.34441	1
11q gain	4 (3%)	146	0.26567	1	0.2648	1	0.067982	1	0.59753	1	1	1	0.23871	1	0.52166	1	NA	NA	0.34441	1
12p gain	22 (15%)	128	0.23425	1	0.019314	1	0.56145	1	1	1	1	1	0.85044	1	0.21041	1	0.062034	1	0.29614	1
12q gain	22 (15%)	128	0.4001	1	0.0057021	1	0.77059	1	1	1	1	1	0.67928	1	0.21041	1	0.09323	1	0.39929	1
13q gain	13 (9%)	137	0.48249	1	0.97443	1	1	1	1	1	1	1	0.2389	1	1	1	NA	NA	0.1889	1
14q gain	21 (14%)	129	0.89463	1	0.61504	1	1	1	0.2474	1	0.64613	1	0.40141	1	0.75471	1	0.75099	1	0.16738	1
15q gain	23 (15%)	127	0.029899	1	0.9582	1	0.21492	1	1	1	1	1	0.7558	1	0.22285	1	0.0063806	1	0.79057	1
16p gain	20 (13%)	130	0.96224	1	0.89261	1	0.56145	1	0.39072	1	0.87148	1	0.92222	1	0.74692	1	0.53406	1	0.81878	1
16q gain	17 (11%)	133	0.062678	1	0.56299	1	0.18764	1	1	1	0.47824	1	0.85001	1	0.48734	1	0.86223	1	0.30539	1
17p gain	11 (7%)	139	0.80475	1	0.30984	1	0.052929	1	0.014552	1	0.541	1	0.92201	1	0.087636	1	NA	NA	0.17151	1
17q gain	21 (14%)	129	0.99878	1	0.97405	1	0.0083896	1	0.058487	1	0.85624	1	0.66234	1	0.75471	1	NA	NA	0.13652	1
18p gain	18 (12%)	132	0.59246	1	0.042985	1	0.31555	1	1	1	0.47824	1	0.84147	1	0.1851	1	0.91353	1	0.66988	1
18q gain	8 (5%)	142	0.72377	1	0.0096104	1	0.13668	1	0.59753	1	0.44814	1	0.87972	1	0.12941	1	NA	NA	0.16406	1
19p gain	21 (14%)	129	0.723	1	0.72888	1	0.3824	1	0.03481	1	1	1	0.71649	1	0.051387	1	0.54943	1	0.722	1
19q gain	32 (21%)	118	0.037818	1	0.83837	1	1	1	0.18107	1	1	1	0.31865	1	0.029041	1	0.35197	1	0.89325	1
20p gain	48 (32%)	102	0.99078	1	0.36541	1	0.81706	1	0.042363	1	0.73901	1	0.81367	1	0.64441	1	0.92699	1	0.26389	1
20q gain	54 (36%)	96	0.58025	1	0.18793	1	1	1	0.38313	1	0.53447	1	0.84118	1	0.65425	1	0.76399	1	0.59285	1
21q gain	19 (13%)	131	0.001747	1	0.051629	1	1	1	1	1	0.65894	1	0.47167	1	0.092911	1	0.55782	1	0.94119	1
22q gain	18 (12%)	132	0.19181	1	0.062097	1	0.31555	1	0.72713	1	0.83368	1	0.81971	1	1	1	NA	NA	0.57592	1
xq gain	19 (13%)	131	0.16143	1	0.54925	1	0.34427	1	0.52611	1	0.59852	1	0.7871	1	1	1	0.96031	1	0.9549	1
1p loss	6 (4%)	144	0.59025	1	0.37298	1	NA	NA	1	1	NA	NA	0.98669	1	0.26181	1	NA	NA	NA	NA
1q loss	6 (4%)	144	0.76353	1	0.47191	1	0.57597	1	0.10428	1	1	1	0.93385	1	0.058451	1	NA	NA	0.63562	1
2p loss	8 (5%)	142	0.57132	1	0.3069	1	1	1	0.66138	1	0.73043	1	0.30836	1	0.6208	1	NA	NA	2.9045e-05	0.0198
2q loss	15 (10%)	135	0.66142	1	0.51881	1	0.73815	1	1	1	1	1	0.46665	1	0.1346	1	NA	NA	0.78142	1
3p loss	39 (26%)	111	0.51285	1	0.43036	1	1	1	0.0084439	1	0.72399	1	0.050387	1	0.042944	1	0.77496	1	0.44	1
3q loss	5 (3%)	145	0.62436	1	0.40203	1	NA	NA	1	1	NA	NA	0.95546	1	0.59046	1	NA	NA	NA	NA
4p loss	62 (41%)	88	0.60309	1	0.89416	1	1	1	0.040158	1	0.44816	1	0.032807	1	0.12187	1	0.85927	1	0.29617	1
4q loss	40 (27%)	110	0.010526	1	0.55399	1	0.46073	1	0.029421	1	0.92281	1	0.48424	1	0.62049	1	0.86491	1	0.21898	1
5p loss	12 (8%)	138	0.0014647	0.996	0.57848	1	0.44148	1	0.056872	1	1	1	0.95724	1	0.030108	1	0.98696	1	0.3008	1
5q loss	32 (21%)	118	0.25698	1	0.2394	1	0.45062	1	1	1	0.82549	1	0.54078	1	0.18202	1	0.7563	1	0.5028	1
6p loss	19 (13%)	131	0.72622	1	0.43982	1	0.72222	1	0.2933	1	1	1	0.7871	1	0.20102	1	0.48183	1	0.878	1
6q loss	35 (23%)	115	0.10773	1	0.39448	1	1	1	0.11254	1	0.46402	1	0.65984	1	0.44246	1	0.01019	1	0.62373	1
7p loss	16 (11%)	134	0.23415	1	0.71598	1	0.50301	1	0.2933	1	1	1	0.93482	1	0.0010593	0.721	0.38015	1	0.30285	1
7q loss	25 (17%)	125	0.0050172	1	0.060648	1	0.14729	1	0.083365	1	0.18689	1	0.7298	1	0.0018394	1	0.6689	1	0.15463	1
8p loss	40 (27%)	110	0.29156	1	0.54579	1	0.62485	1	1	1	0.92281	1	0.14032	1	0.32097	1	0.8838	1	0.82318	1
8q loss	11 (7%)	139	0.12291	1	0.5995	1	0.34888	1	0.66138	1	0.057164	1	0.92201	1	0.087636	1	NA	NA	0.58424	1
9p loss	30 (20%)	120	0.071189	1	0.15286	1	1	1	0.57226	1	0.88456	1	0.71697	1	0.58888	1	0.97179	1	0.51879	1
9q loss	23 (15%)	127	0.054843	1	0.047065	1	0.75565	1	0.74732	1	1	1	0.87768	1	1	1	NA	NA	0.62089	1
10p loss	30 (20%)	120	0.076056	1	0.26239	1	0.098792	1	0.015911	1	0.099657	1	0.89505	1	0.051102	1	0.5366	1	0.10419	1
10q loss	33 (22%)	117	0.012273	1	0.055328	1	0.20545	1	0.0036015	1	0.055824	1	0.85591	1	0.10905	1	0.25701	1	0.095309	1
11p loss	47 (31%)	103	0.97413	1	0.094139	1	0.82394	1	0.82533	1	0.54284	1	0.077278	1	0.81529	1	0.60466	1	0.43544	1
11q loss	60 (40%)	90	0.82675	1	0.0044931	1	0.67149	1	1	1	1	1	0.19529	1	1	1	0.9938	1	0.2568	1
12p loss	22 (15%)	128	0.52874	1	0.67161	1	0.55036	1	1	1	1	1	0.85266	1	0.76441	1	0.83128	1	0.67518	1
12q loss	7 (5%)	143	0.57619	1	0.10565	1	1	1	1	1	0.62715	1	0.98855	1	0.090932	1	NA	NA	NA	NA
13q loss	39 (26%)	111	0.48077	1	0.20806	1	0.14077	1	0.24538	1	1	1	0.064128	1	0.46083	1	0.11354	1	0.32015	1
14q loss	17 (11%)	133	0.92092	1	0.1227	1	1	1	0.49193	1	1	1	0.90931	1	0.30799	1	NA	NA	0.20319	1
15q loss	20 (13%)	130	0.87306	1	0.34464	1	0.75912	1	0.76932	1	0.35207	1	0.52604	1	1	1	0.26871	1	0.51975	1
16p loss	16 (11%)	134	0.38603	1	0.14137	1	0.50409	1	0.33009	1	0.050961	1	0.29623	1	1	1	0.024095	1	0.62287	1
16q loss	21 (14%)	129	0.48042	1	0.062811	1	0.38776	1	0.17058	1	0.87148	1	0.00010051	0.0685	1	1	0.66813	1	0.73217	1
17p loss	47 (31%)	103	0.3008	1	0.1553	1	1	1	1	1	0.40586	1	0.12535	1	0.6388	1	0.4733	1	0.55327	1
17q loss	16 (11%)	134	0.13349	1	0.033381	1	0.72559	1	0.49193	1	1	1	0.58514	1	0.73179	1	0.7585	1	0.0033225	1
18p loss	28 (19%)	122	0.64208	1	0.46524	1	0.092346	1	0.17058	1	0.77753	1	0.58296	1	0.25785	1	0.76078	1	0.035937	1
18q loss	38 (25%)	112	0.39859	1	0.88985	1	0.44934	1	0.024911	1	0.45031	1	0.057049	1	0.802	1	0.75644	1	0.72338	1
19p loss	25 (17%)	125	0.12692	1	0.82076	1	0.75369	1	0.032477	1	1	1	0.82756	1	0.37549	1	0.60241	1	0.85112	1
19q loss	12 (8%)	138	0.77802	1	0.42965	1	1	1	0.26662	1	0.78907	1	0.62724	1	0.1164	1	NA	NA	0.62863	1
20p loss	10 (7%)	140	0.7092	1	0.14338	1	1	1	1	1	0.77591	1	0.90143	1	0.21465	1	0.019628	1	0.027791	1
20q loss	4 (3%)	146	0.22556	1	0.083302	1	1	1	1	1	1	1	0.95457	1	1	1	NA	NA	0.84987	1
21q loss	20 (13%)	130	0.22283	1	0.91331	1	0.3824	1	0.77512	1	0.35207	1	0.55175	1	1	1	NA	NA	0.41702	1
22q loss	30 (20%)	120	0.32538	1	0.3996	1	1	1	1	1	1	1	0.32099	1	0.10792	1	0.80879	1	0.53355	1
xq loss	31 (21%)	119	0.069299	1	0.88236	1	0.44934	1	0.80689	1	0.65081	1	0.54059	1	0.60063	1	0.98872	1	0.63833	1