This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 71 focal events and 10 molecular subtypes across 571 patients, 113 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p36.21 cnv correlated to 'CN_CNMF'.
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amp_1q32.1 cnv correlated to 'CN_CNMF'.
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amp_1q44 cnv correlated to 'CN_CNMF'.
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amp_3q26.33 cnv correlated to 'CN_CNMF'.
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amp_4q12 cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
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amp_7p11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_7q11.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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amp_7q21.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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amp_7q31.2 cnv correlated to 'CN_CNMF'.
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amp_8q24.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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amp_12p13.32 cnv correlated to 'CN_CNMF'.
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amp_12q14.1 cnv correlated to 'CN_CNMF'.
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amp_12q15 cnv correlated to 'CN_CNMF'.
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amp_17q25.1 cnv correlated to 'CN_CNMF'.
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amp_19p13.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_19p13.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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amp_21q21.1 cnv correlated to 'CN_CNMF'.
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del_1p36.23 cnv correlated to 'CN_CNMF'.
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del_2q22.1 cnv correlated to 'CN_CNMF'.
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del_3q13.31 cnv correlated to 'CN_CNMF'.
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del_4q34.3 cnv correlated to 'CN_CNMF'.
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del_5q35.3 cnv correlated to 'MRNA_CNMF', 'MIR_CNMF', and 'CN_CNMF'.
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del_6q22.31 cnv correlated to 'CN_CNMF'.
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del_6q26 cnv correlated to 'CN_CNMF'.
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del_9p21.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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del_10p15.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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del_10p13 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CNMF'.
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del_10p11.23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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del_10q23.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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del_10q26.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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del_11p15.5 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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del_11p11.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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del_11q14.1 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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del_12q12 cnv correlated to 'CN_CNMF'.
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del_12q15 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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del_13q14.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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del_14q13.1 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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del_14q24.2 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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del_15q14 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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del_17p13.2 cnv correlated to 'CN_CNMF'.
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del_17p13.1 cnv correlated to 'CN_CNMF'.
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del_17q11.2 cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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del_18q22.3 cnv correlated to 'CN_CNMF'.
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del_19q13.41 cnv correlated to 'MRNA_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'CN_CNMF'.
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del_xp22.2 cnv correlated to 'CN_CNMF'.
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del_xq23 cnv correlated to 'CN_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 7p11 2 | 502 (88%) | 69 |
1.14e-10 (7.85e-08) |
1.9e-09 (1.3e-06) |
3.79e-06 (0.00247) |
2.84e-10 (1.95e-07) |
3.03e-21 (2.13e-18) |
4.73e-08 (3.2e-05) |
1.77e-05 (0.0112) |
7.57e-05 (0.0469) |
1.38e-05 (0.00884) |
0.000346 (0.208) |
amp 7q11 21 | 459 (80%) | 112 |
1.63e-05 (0.0104) |
4.97e-06 (0.00323) |
3.3e-05 (0.0206) |
7.93e-05 (0.049) |
3.02e-08 (2.04e-05) |
0.00135 (0.779) |
0.00453 (1.00) |
0.322 (1.00) |
0.00403 (1.00) |
0.00167 (0.954) |
amp 19p13 3 | 242 (42%) | 329 |
3.55e-09 (2.42e-06) |
3.35e-06 (0.00219) |
0.0377 (1.00) |
0.000107 (0.0659) |
2e-24 (1.41e-21) |
0.000583 (0.345) |
0.00967 (1.00) |
1.14e-05 (0.00734) |
0.81 (1.00) |
0.051 (1.00) |
amp 19p13 2 | 247 (43%) | 324 |
3.07e-12 (2.13e-09) |
2.97e-06 (0.00194) |
0.148 (1.00) |
0.000241 (0.145) |
2.05e-25 (1.45e-22) |
0.000673 (0.397) |
0.0131 (1.00) |
2.61e-05 (0.0165) |
0.169 (1.00) |
0.0203 (1.00) |
del 10p13 | 466 (82%) | 105 |
6.76e-07 (0.000446) |
1.51e-05 (0.00963) |
0.00257 (1.00) |
5.14e-06 (0.00332) |
5.61e-22 (3.96e-19) |
0.0489 (1.00) |
0.00016 (0.0973) |
0.00444 (1.00) |
0.0829 (1.00) |
0.411 (1.00) |
del 10p11 23 | 471 (82%) | 100 |
1.14e-09 (7.83e-07) |
1.9e-07 (0.000127) |
0.000104 (0.0643) |
1.16e-06 (0.000762) |
4.01e-25 (2.84e-22) |
0.0201 (1.00) |
0.000924 (0.538) |
0.0177 (1.00) |
0.0467 (1.00) |
0.074 (1.00) |
amp 19q12 | 213 (37%) | 358 |
9.69e-11 (6.69e-08) |
2.58e-08 (1.75e-05) |
0.284 (1.00) |
0.00192 (1.00) |
1.29e-19 (9.05e-17) |
0.0533 (1.00) |
0.00916 (1.00) |
0.000131 (0.0799) |
0.0666 (1.00) |
0.0143 (1.00) |
del 10p15 3 | 465 (81%) | 106 |
4.32e-06 (0.00281) |
0.000152 (0.0926) |
0.00873 (1.00) |
2.59e-05 (0.0164) |
2.34e-20 (1.64e-17) |
0.0946 (1.00) |
0.00571 (1.00) |
0.0275 (1.00) |
0.0146 (1.00) |
0.411 (1.00) |
del 10q23 31 | 508 (89%) | 63 |
1.25e-06 (0.000821) |
3.93e-05 (0.0245) |
0.0125 (1.00) |
0.000287 (0.173) |
1.81e-18 (1.27e-15) |
0.133 (1.00) |
0.0118 (1.00) |
0.133 (1.00) |
0.369 (1.00) |
0.161 (1.00) |
del 11p15 5 | 127 (22%) | 444 |
2.19e-09 (1.5e-06) |
2.01e-07 (0.000134) |
0.162 (1.00) |
0.000354 (0.212) |
3.49e-14 (2.43e-11) |
0.0112 (1.00) |
0.167 (1.00) |
0.0962 (1.00) |
0.00287 (1.00) |
0.128 (1.00) |
del 15q14 | 150 (26%) | 421 |
2.27e-05 (0.0144) |
6.61e-08 (4.44e-05) |
0.00124 (0.72) |
0.000116 (0.071) |
7.91e-07 (0.000521) |
0.00124 (0.721) |
0.0584 (1.00) |
0.0108 (1.00) |
0.000833 (0.487) |
0.0551 (1.00) |
amp 7q21 2 | 475 (83%) | 96 |
2.92e-05 (0.0183) |
0.000325 (0.195) |
0.0507 (1.00) |
0.00106 (0.618) |
4.85e-08 (3.28e-05) |
0.000441 (0.263) |
0.019 (1.00) |
0.0912 (1.00) |
0.0653 (1.00) |
0.00458 (1.00) |
amp 8q24 21 | 70 (12%) | 501 |
2.39e-07 (0.000159) |
0.000141 (0.0865) |
0.0263 (1.00) |
0.00453 (1.00) |
2.32e-07 (0.000154) |
0.0392 (1.00) |
0.336 (1.00) |
0.0087 (1.00) |
0.0888 (1.00) |
0.14 (1.00) |
del 5q35 3 | 53 (9%) | 518 |
2.52e-05 (0.016) |
0.00203 (1.00) |
0.00034 (0.204) |
0.0025 (1.00) |
7.09e-06 (0.00457) |
0.00538 (1.00) |
0.84 (1.00) |
0.388 (1.00) |
0.208 (1.00) |
0.799 (1.00) |
del 9p21 3 | 416 (73%) | 155 |
5.8e-06 (0.00374) |
1.12e-07 (7.5e-05) |
0.694 (1.00) |
0.00416 (1.00) |
4.2e-13 (2.92e-10) |
0.0823 (1.00) |
0.137 (1.00) |
0.00854 (1.00) |
0.0293 (1.00) |
0.00323 (1.00) |
del 10q26 3 | 509 (89%) | 62 |
3.21e-07 (0.000213) |
5.06e-06 (0.00328) |
0.0433 (1.00) |
0.00347 (1.00) |
1.13e-15 (7.89e-13) |
0.00733 (1.00) |
0.122 (1.00) |
0.0744 (1.00) |
0.25 (1.00) |
0.374 (1.00) |
del 11p11 2 | 103 (18%) | 468 |
1.11e-07 (7.43e-05) |
0.000177 (0.108) |
0.5 (1.00) |
0.00881 (1.00) |
4.43e-12 (3.07e-09) |
0.053 (1.00) |
0.91 (1.00) |
0.568 (1.00) |
0.0935 (1.00) |
0.466 (1.00) |
del 12q15 | 77 (13%) | 494 |
0.000187 (0.113) |
6.13e-05 (0.038) |
0.485 (1.00) |
0.285 (1.00) |
1.44e-06 (0.000945) |
0.0182 (1.00) |
0.554 (1.00) |
0.509 (1.00) |
0.728 (1.00) |
0.612 (1.00) |
del 13q14 2 | 237 (42%) | 334 |
1.6e-07 (0.000107) |
3.82e-05 (0.0238) |
0.351 (1.00) |
0.0366 (1.00) |
4.79e-23 (3.38e-20) |
0.00468 (1.00) |
0.853 (1.00) |
0.126 (1.00) |
0.0809 (1.00) |
0.28 (1.00) |
amp 4q12 | 107 (19%) | 464 |
0.000707 (0.415) |
2.81e-05 (0.0177) |
0.535 (1.00) |
0.0269 (1.00) |
1.65e-07 (0.00011) |
0.446 (1.00) |
0.465 (1.00) |
0.322 (1.00) |
0.159 (1.00) |
0.408 (1.00) |
del 11q14 1 | 95 (17%) | 476 |
7.97e-07 (0.000525) |
0.0151 (1.00) |
0.873 (1.00) |
0.0961 (1.00) |
1.16e-15 (8.11e-13) |
0.411 (1.00) |
0.735 (1.00) |
0.498 (1.00) |
0.119 (1.00) |
0.584 (1.00) |
del 14q13 1 | 176 (31%) | 395 |
1.29e-05 (0.0083) |
0.0104 (1.00) |
0.611 (1.00) |
0.548 (1.00) |
8.8e-21 (6.19e-18) |
0.312 (1.00) |
0.616 (1.00) |
0.273 (1.00) |
0.429 (1.00) |
0.51 (1.00) |
del 14q24 2 | 172 (30%) | 399 |
1.29e-07 (8.65e-05) |
0.000577 (0.342) |
0.0578 (1.00) |
0.544 (1.00) |
1.05e-27 (7.46e-25) |
0.0448 (1.00) |
0.541 (1.00) |
0.176 (1.00) |
0.0876 (1.00) |
0.0515 (1.00) |
del 17q11 2 | 71 (12%) | 500 |
8.51e-06 (0.00547) |
0.00136 (0.781) |
0.00257 (1.00) |
0.101 (1.00) |
1.6e-05 (0.0102) |
0.339 (1.00) |
0.00682 (1.00) |
0.0051 (1.00) |
0.52 (1.00) |
0.105 (1.00) |
amp 1p36 21 | 92 (16%) | 479 |
0.589 (1.00) |
0.571 (1.00) |
0.403 (1.00) |
0.0628 (1.00) |
1.38e-09 (9.45e-07) |
0.612 (1.00) |
0.0266 (1.00) |
0.0526 (1.00) |
0.0112 (1.00) |
0.0152 (1.00) |
amp 1q32 1 | 159 (28%) | 412 |
0.815 (1.00) |
0.479 (1.00) |
0.334 (1.00) |
0.162 (1.00) |
4.03e-09 (2.74e-06) |
0.778 (1.00) |
0.909 (1.00) |
0.373 (1.00) |
0.54 (1.00) |
0.123 (1.00) |
amp 1q44 | 99 (17%) | 472 |
0.143 (1.00) |
0.577 (1.00) |
0.599 (1.00) |
0.426 (1.00) |
4.12e-11 (2.84e-08) |
0.517 (1.00) |
0.318 (1.00) |
0.124 (1.00) |
0.935 (1.00) |
0.433 (1.00) |
amp 3q26 33 | 111 (19%) | 460 |
0.00794 (1.00) |
0.0359 (1.00) |
0.445 (1.00) |
0.105 (1.00) |
7.04e-10 (4.83e-07) |
0.00095 (0.553) |
0.0887 (1.00) |
0.301 (1.00) |
0.286 (1.00) |
0.562 (1.00) |
amp 7q31 2 | 468 (82%) | 103 |
0.002 (1.00) |
0.000435 (0.26) |
0.0109 (1.00) |
0.0328 (1.00) |
5.16e-05 (0.032) |
0.000441 (0.263) |
0.111 (1.00) |
0.136 (1.00) |
0.401 (1.00) |
0.00588 (1.00) |
amp 12p13 32 | 82 (14%) | 489 |
0.665 (1.00) |
0.809 (1.00) |
0.344 (1.00) |
0.885 (1.00) |
3.05e-05 (0.0191) |
0.14 (1.00) |
0.387 (1.00) |
0.556 (1.00) |
0.304 (1.00) |
0.273 (1.00) |
amp 12q14 1 | 133 (23%) | 438 |
0.0678 (1.00) |
0.114 (1.00) |
0.0981 (1.00) |
0.112 (1.00) |
6.56e-08 (4.41e-05) |
0.659 (1.00) |
0.0934 (1.00) |
0.345 (1.00) |
0.0424 (1.00) |
0.1 (1.00) |
amp 12q15 | 92 (16%) | 479 |
0.727 (1.00) |
0.633 (1.00) |
0.704 (1.00) |
0.813 (1.00) |
4.27e-07 (0.000282) |
0.613 (1.00) |
0.296 (1.00) |
0.633 (1.00) |
0.312 (1.00) |
0.694 (1.00) |
amp 17q25 1 | 84 (15%) | 487 |
0.0142 (1.00) |
0.238 (1.00) |
0.281 (1.00) |
0.609 (1.00) |
0.000105 (0.0649) |
0.873 (1.00) |
0.14 (1.00) |
0.274 (1.00) |
0.833 (1.00) |
0.711 (1.00) |
amp 21q21 1 | 69 (12%) | 502 |
0.00541 (1.00) |
0.00998 (1.00) |
0.0181 (1.00) |
0.0142 (1.00) |
0.000412 (0.247) |
0.673 (1.00) |
0.662 (1.00) |
0.807 (1.00) |
0.0846 (1.00) |
0.06 (1.00) |
del 1p36 23 | 136 (24%) | 435 |
0.0702 (1.00) |
0.0628 (1.00) |
0.558 (1.00) |
0.501 (1.00) |
3.15e-05 (0.0197) |
0.452 (1.00) |
0.278 (1.00) |
0.616 (1.00) |
0.0174 (1.00) |
0.107 (1.00) |
del 2q22 1 | 45 (8%) | 526 |
0.00608 (1.00) |
0.054 (1.00) |
0.389 (1.00) |
0.0763 (1.00) |
5.28e-06 (0.00341) |
0.0486 (1.00) |
0.478 (1.00) |
0.86 (1.00) |
0.181 (1.00) |
0.197 (1.00) |
del 3q13 31 | 58 (10%) | 513 |
0.51 (1.00) |
0.864 (1.00) |
0.689 (1.00) |
0.937 (1.00) |
2.76e-05 (0.0174) |
0.207 (1.00) |
0.968 (1.00) |
0.878 (1.00) |
1 (1.00) |
0.0547 (1.00) |
del 4q34 3 | 91 (16%) | 480 |
0.00574 (1.00) |
0.0064 (1.00) |
0.0751 (1.00) |
0.127 (1.00) |
1.14e-06 (0.000749) |
0.00135 (0.775) |
0.0988 (1.00) |
0.283 (1.00) |
0.118 (1.00) |
0.944 (1.00) |
del 6q22 31 | 157 (27%) | 414 |
0.631 (1.00) |
0.781 (1.00) |
0.295 (1.00) |
0.142 (1.00) |
5.52e-08 (3.72e-05) |
0.289 (1.00) |
0.345 (1.00) |
0.102 (1.00) |
0.776 (1.00) |
0.408 (1.00) |
del 6q26 | 178 (31%) | 393 |
0.739 (1.00) |
0.0641 (1.00) |
0.476 (1.00) |
0.157 (1.00) |
0.000215 (0.13) |
0.557 (1.00) |
0.0353 (1.00) |
0.00754 (1.00) |
0.764 (1.00) |
0.296 (1.00) |
del 12q12 | 76 (13%) | 495 |
0.0139 (1.00) |
0.000621 (0.367) |
0.267 (1.00) |
0.0979 (1.00) |
9.15e-05 (0.0565) |
0.0714 (1.00) |
0.0999 (1.00) |
0.417 (1.00) |
1 (1.00) |
0.626 (1.00) |
del 17p13 2 | 86 (15%) | 485 |
0.00318 (1.00) |
0.706 (1.00) |
0.943 (1.00) |
0.181 (1.00) |
1.47e-08 (1e-05) |
0.0299 (1.00) |
0.624 (1.00) |
0.455 (1.00) |
0.546 (1.00) |
0.266 (1.00) |
del 17p13 1 | 95 (17%) | 476 |
0.000456 (0.271) |
0.336 (1.00) |
0.683 (1.00) |
0.251 (1.00) |
7.79e-13 (5.42e-10) |
0.00245 (1.00) |
0.689 (1.00) |
0.444 (1.00) |
0.614 (1.00) |
0.282 (1.00) |
del 18q22 3 | 81 (14%) | 490 |
0.127 (1.00) |
0.0312 (1.00) |
0.779 (1.00) |
0.0675 (1.00) |
2.2e-05 (0.0139) |
0.0403 (1.00) |
0.0112 (1.00) |
0.00128 (0.736) |
0.195 (1.00) |
0.54 (1.00) |
del 19q13 41 | 99 (17%) | 472 |
0.00331 (1.00) |
0.000211 (0.128) |
0.0407 (1.00) |
0.0194 (1.00) |
0.00171 (0.976) |
0.176 (1.00) |
0.0552 (1.00) |
0.508 (1.00) |
0.0352 (1.00) |
0.139 (1.00) |
del 22q13 32 | 211 (37%) | 360 |
0.714 (1.00) |
0.224 (1.00) |
0.0396 (1.00) |
0.326 (1.00) |
2.67e-05 (0.0168) |
0.196 (1.00) |
0.784 (1.00) |
0.917 (1.00) |
0.0511 (1.00) |
0.954 (1.00) |
del xp22 2 | 116 (20%) | 455 |
0.00592 (1.00) |
0.0295 (1.00) |
0.113 (1.00) |
0.323 (1.00) |
3.01e-08 (2.04e-05) |
0.0138 (1.00) |
0.678 (1.00) |
0.169 (1.00) |
0.28 (1.00) |
0.755 (1.00) |
del xq23 | 107 (19%) | 464 |
0.0193 (1.00) |
0.0223 (1.00) |
0.0987 (1.00) |
0.237 (1.00) |
3.37e-11 (2.33e-08) |
0.0417 (1.00) |
0.909 (1.00) |
0.582 (1.00) |
0.161 (1.00) |
0.549 (1.00) |
amp 2p24 3 | 49 (9%) | 522 |
0.101 (1.00) |
0.0651 (1.00) |
0.429 (1.00) |
0.606 (1.00) |
0.00126 (0.727) |
0.148 (1.00) |
0.42 (1.00) |
0.206 (1.00) |
0.884 (1.00) |
0.632 (1.00) |
amp 4p16 3 | 48 (8%) | 523 |
0.309 (1.00) |
0.198 (1.00) |
0.851 (1.00) |
0.353 (1.00) |
0.302 (1.00) |
0.531 (1.00) |
0.709 (1.00) |
0.221 (1.00) |
1 (1.00) |
0.734 (1.00) |
amp 11p13 | 31 (5%) | 540 |
0.771 (1.00) |
1 (1.00) |
0.551 (1.00) |
0.892 (1.00) |
0.385 (1.00) |
0.551 (1.00) |
0.714 (1.00) |
0.52 (1.00) |
1 (1.00) |
0.893 (1.00) |
amp 13q34 | 32 (6%) | 539 |
0.262 (1.00) |
0.522 (1.00) |
0.0311 (1.00) |
0.376 (1.00) |
0.0568 (1.00) |
0.776 (1.00) |
0.0205 (1.00) |
0.0889 (1.00) |
0.49 (1.00) |
0.817 (1.00) |
amp 13q34 | 30 (5%) | 541 |
0.143 (1.00) |
0.716 (1.00) |
0.216 (1.00) |
0.58 (1.00) |
0.116 (1.00) |
0.776 (1.00) |
0.0538 (1.00) |
0.116 (1.00) |
0.368 (1.00) |
0.648 (1.00) |
amp 14q32 33 | 36 (6%) | 535 |
0.19 (1.00) |
0.492 (1.00) |
0.0905 (1.00) |
1 (1.00) |
0.824 (1.00) |
0.289 (1.00) |
0.0249 (1.00) |
0.138 (1.00) |
0.0384 (1.00) |
0.817 (1.00) |
amp 17p13 2 | 51 (9%) | 520 |
0.000697 (0.41) |
0.00637 (1.00) |
0.0491 (1.00) |
0.107 (1.00) |
0.000885 (0.517) |
0.0733 (1.00) |
0.13 (1.00) |
0.55 (1.00) |
0.405 (1.00) |
0.496 (1.00) |
del 1p36 32 | 100 (18%) | 471 |
0.912 (1.00) |
0.0673 (1.00) |
0.583 (1.00) |
0.141 (1.00) |
0.35 (1.00) |
0.351 (1.00) |
0.599 (1.00) |
0.421 (1.00) |
0.25 (1.00) |
0.0462 (1.00) |
del 1p32 3 | 61 (11%) | 510 |
0.243 (1.00) |
0.598 (1.00) |
0.817 (1.00) |
0.174 (1.00) |
0.389 (1.00) |
0.167 (1.00) |
0.709 (1.00) |
0.629 (1.00) |
0.79 (1.00) |
0.165 (1.00) |
del 1p22 1 | 48 (8%) | 523 |
0.97 (1.00) |
0.852 (1.00) |
0.798 (1.00) |
0.0842 (1.00) |
0.136 (1.00) |
0.495 (1.00) |
0.865 (1.00) |
0.337 (1.00) |
1 (1.00) |
0.015 (1.00) |
del 1q42 11 | 51 (9%) | 520 |
0.219 (1.00) |
0.785 (1.00) |
0.511 (1.00) |
0.57 (1.00) |
0.662 (1.00) |
0.026 (1.00) |
0.14 (1.00) |
0.0144 (1.00) |
0.686 (1.00) |
0.664 (1.00) |
del 1q44 | 35 (6%) | 536 |
0.788 (1.00) |
0.579 (1.00) |
0.734 (1.00) |
0.48 (1.00) |
0.251 (1.00) |
0.0189 (1.00) |
0.662 (1.00) |
0.635 (1.00) |
0.539 (1.00) |
0.904 (1.00) |
del 2q37 1 | 54 (9%) | 517 |
0.102 (1.00) |
0.0367 (1.00) |
0.316 (1.00) |
0.0718 (1.00) |
0.0471 (1.00) |
0.0853 (1.00) |
0.784 (1.00) |
0.741 (1.00) |
0.181 (1.00) |
0.687 (1.00) |
del 3p21 1 | 52 (9%) | 519 |
0.246 (1.00) |
0.505 (1.00) |
0.671 (1.00) |
0.972 (1.00) |
0.000812 (0.476) |
0.1 (1.00) |
0.137 (1.00) |
0.794 (1.00) |
0.461 (1.00) |
0.089 (1.00) |
del 3q22 1 | 58 (10%) | 513 |
0.784 (1.00) |
0.233 (1.00) |
0.944 (1.00) |
0.822 (1.00) |
0.00068 (0.4) |
0.272 (1.00) |
0.964 (1.00) |
0.808 (1.00) |
1 (1.00) |
0.103 (1.00) |
del 3q29 | 65 (11%) | 506 |
0.0923 (1.00) |
0.225 (1.00) |
0.535 (1.00) |
0.623 (1.00) |
0.0449 (1.00) |
0.601 (1.00) |
0.446 (1.00) |
0.524 (1.00) |
0.928 (1.00) |
0.756 (1.00) |
del 4p16 3 | 77 (13%) | 494 |
0.0486 (1.00) |
0.00591 (1.00) |
0.326 (1.00) |
0.5 (1.00) |
0.00662 (1.00) |
0.923 (1.00) |
0.819 (1.00) |
0.692 (1.00) |
0.849 (1.00) |
0.819 (1.00) |
del 8p23 2 | 65 (11%) | 506 |
0.377 (1.00) |
0.46 (1.00) |
0.18 (1.00) |
0.8 (1.00) |
0.122 (1.00) |
1 (1.00) |
0.944 (1.00) |
0.834 (1.00) |
0.721 (1.00) |
0.384 (1.00) |
del 9q34 2 | 78 (14%) | 493 |
0.215 (1.00) |
0.0624 (1.00) |
0.516 (1.00) |
0.146 (1.00) |
0.338 (1.00) |
0.127 (1.00) |
0.222 (1.00) |
0.142 (1.00) |
0.436 (1.00) |
0.0593 (1.00) |
del 12p13 1 | 72 (13%) | 499 |
0.0509 (1.00) |
0.00468 (1.00) |
0.254 (1.00) |
0.175 (1.00) |
0.0634 (1.00) |
0.517 (1.00) |
0.665 (1.00) |
0.478 (1.00) |
1 (1.00) |
0.611 (1.00) |
del 16p12 2 | 92 (16%) | 479 |
0.402 (1.00) |
0.499 (1.00) |
0.284 (1.00) |
0.906 (1.00) |
0.216 (1.00) |
0.143 (1.00) |
0.404 (1.00) |
0.537 (1.00) |
0.431 (1.00) |
0.416 (1.00) |
del 16q23 3 | 97 (17%) | 474 |
0.0224 (1.00) |
0.565 (1.00) |
0.862 (1.00) |
0.817 (1.00) |
0.00597 (1.00) |
0.537 (1.00) |
0.0388 (1.00) |
0.0848 (1.00) |
0.513 (1.00) |
0.474 (1.00) |
del 21q22 11 | 46 (8%) | 525 |
0.00158 (0.908) |
0.00351 (1.00) |
0.00581 (1.00) |
0.111 (1.00) |
0.00205 (1.00) |
0.342 (1.00) |
0.154 (1.00) |
0.36 (1.00) |
0.681 (1.00) |
0.16 (1.00) |
P value = 1.38e-09 (Fisher's exact test), Q value = 9.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 1(1P36.21) MUTATED | 52 | 19 | 21 |
AMP PEAK 1(1P36.21) WILD-TYPE | 107 | 193 | 179 |
P value = 4.03e-09 (Fisher's exact test), Q value = 2.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 2(1Q32.1) MUTATED | 75 | 43 | 41 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 84 | 169 | 159 |
P value = 4.12e-11 (Fisher's exact test), Q value = 2.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 3(1Q44) MUTATED | 57 | 20 | 22 |
AMP PEAK 3(1Q44) WILD-TYPE | 102 | 192 | 178 |
P value = 7.04e-10 (Fisher's exact test), Q value = 4.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 5(3Q26.33) MUTATED | 59 | 22 | 30 |
AMP PEAK 5(3Q26.33) WILD-TYPE | 100 | 190 | 170 |
P value = 2.81e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
AMP PEAK 7(4Q12) MUTATED | 14 | 53 | 32 |
AMP PEAK 7(4Q12) WILD-TYPE | 103 | 118 | 188 |
P value = 1.65e-07 (Fisher's exact test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 7(4Q12) MUTATED | 53 | 22 | 32 |
AMP PEAK 7(4Q12) WILD-TYPE | 106 | 190 | 168 |
P value = 1.14e-10 (Fisher's exact test), Q value = 7.9e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 8(7P11.2) MUTATED | 139 | 68 | 147 | 89 |
AMP PEAK 8(7P11.2) WILD-TYPE | 8 | 28 | 5 | 24 |
P value = 1.9e-09 (Fisher's exact test), Q value = 1.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
AMP PEAK 8(7P11.2) MUTATED | 112 | 126 | 205 |
AMP PEAK 8(7P11.2) WILD-TYPE | 5 | 45 | 15 |
P value = 3.79e-06 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 8(7P11.2) MUTATED | 151 | 146 | 73 | 110 |
AMP PEAK 8(7P11.2) WILD-TYPE | 5 | 37 | 14 | 10 |
P value = 2.84e-10 (Fisher's exact test), Q value = 2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
AMP PEAK 8(7P11.2) MUTATED | 167 | 137 | 176 |
AMP PEAK 8(7P11.2) WILD-TYPE | 10 | 47 | 9 |
P value = 3.03e-21 (Fisher's exact test), Q value = 2.1e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 8(7P11.2) MUTATED | 150 | 211 | 141 |
AMP PEAK 8(7P11.2) WILD-TYPE | 9 | 1 | 59 |
P value = 4.73e-08 (Fisher's exact test), Q value = 3.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 45 | 35 |
AMP PEAK 8(7P11.2) MUTATED | 40 | 45 | 22 |
AMP PEAK 8(7P11.2) WILD-TYPE | 0 | 0 | 13 |
P value = 1.77e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
AMP PEAK 8(7P11.2) MUTATED | 49 | 42 | 44 | 44 |
AMP PEAK 8(7P11.2) WILD-TYPE | 5 | 16 | 0 | 1 |
P value = 7.57e-05 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 33 | 104 |
AMP PEAK 8(7P11.2) MUTATED | 64 | 31 | 84 |
AMP PEAK 8(7P11.2) WILD-TYPE | 0 | 2 | 20 |
P value = 1.38e-05 (Fisher's exact test), Q value = 0.0088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
AMP PEAK 8(7P11.2) MUTATED | 31 | 66 | 34 |
AMP PEAK 8(7P11.2) WILD-TYPE | 13 | 1 | 2 |
P value = 0.000346 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 21 | 60 |
AMP PEAK 8(7P11.2) MUTATED | 64 | 21 | 46 |
AMP PEAK 8(7P11.2) WILD-TYPE | 2 | 0 | 14 |
P value = 1.63e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 9(7Q11.21) MUTATED | 133 | 64 | 124 | 82 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 14 | 32 | 28 | 31 |
P value = 4.97e-06 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
AMP PEAK 9(7Q11.21) MUTATED | 95 | 115 | 193 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 22 | 56 | 27 |
P value = 3.3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
AMP PEAK 9(7Q11.21) MUTATED | 141 | 133 | 63 | 103 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 15 | 50 | 24 | 17 |
P value = 7.93e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
AMP PEAK 9(7Q11.21) MUTATED | 150 | 129 | 161 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 27 | 55 | 24 |
P value = 3.02e-08 (Fisher's exact test), Q value = 2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 9(7Q11.21) MUTATED | 143 | 182 | 134 |
AMP PEAK 9(7Q11.21) WILD-TYPE | 16 | 30 | 66 |
P value = 2.92e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 10(7Q21.2) MUTATED | 131 | 64 | 134 | 89 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 16 | 32 | 18 | 24 |
P value = 0.000325 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
AMP PEAK 10(7Q21.2) MUTATED | 101 | 124 | 193 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 16 | 47 | 27 |
P value = 4.85e-08 (Fisher's exact test), Q value = 3.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 10(7Q21.2) MUTATED | 142 | 192 | 141 |
AMP PEAK 10(7Q21.2) WILD-TYPE | 17 | 20 | 59 |
P value = 5.16e-05 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 11(7Q31.2) MUTATED | 138 | 186 | 144 |
AMP PEAK 11(7Q31.2) WILD-TYPE | 21 | 26 | 56 |
P value = 2.39e-07 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 12(8Q24.21) MUTATED | 9 | 25 | 7 | 21 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 138 | 71 | 145 | 92 |
P value = 0.000141 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
AMP PEAK 12(8Q24.21) MUTATED | 8 | 36 | 18 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 109 | 135 | 202 |
P value = 2.32e-07 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 12(8Q24.21) MUTATED | 35 | 8 | 27 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 124 | 204 | 173 |
P value = 3.05e-05 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 14(12P13.32) MUTATED | 39 | 16 | 27 |
AMP PEAK 14(12P13.32) WILD-TYPE | 120 | 196 | 173 |
P value = 6.56e-08 (Fisher's exact test), Q value = 4.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 15(12Q14.1) MUTATED | 64 | 36 | 33 |
AMP PEAK 15(12Q14.1) WILD-TYPE | 95 | 176 | 167 |
P value = 4.27e-07 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 16(12Q15) MUTATED | 48 | 23 | 21 |
AMP PEAK 16(12Q15) WILD-TYPE | 111 | 189 | 179 |
P value = 0.000105 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 21(17Q25.1) MUTATED | 40 | 20 | 24 |
AMP PEAK 21(17Q25.1) WILD-TYPE | 119 | 192 | 176 |
P value = 3.55e-09 (Fisher's exact test), Q value = 2.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 22(19P13.3) MUTATED | 58 | 34 | 95 | 28 |
AMP PEAK 22(19P13.3) WILD-TYPE | 89 | 62 | 57 | 85 |
P value = 3.35e-06 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
AMP PEAK 22(19P13.3) MUTATED | 71 | 53 | 91 |
AMP PEAK 22(19P13.3) WILD-TYPE | 46 | 118 | 129 |
P value = 0.000107 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
AMP PEAK 22(19P13.3) MUTATED | 94 | 57 | 79 |
AMP PEAK 22(19P13.3) WILD-TYPE | 83 | 127 | 106 |
P value = 2e-24 (Fisher's exact test), Q value = 1.4e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 22(19P13.3) MUTATED | 42 | 149 | 51 |
AMP PEAK 22(19P13.3) WILD-TYPE | 117 | 63 | 149 |
P value = 1.14e-05 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 33 | 104 |
AMP PEAK 22(19P13.3) MUTATED | 42 | 9 | 32 |
AMP PEAK 22(19P13.3) WILD-TYPE | 22 | 24 | 72 |
P value = 3.07e-12 (Fisher's exact test), Q value = 2.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 23(19P13.2) MUTATED | 57 | 38 | 101 | 25 |
AMP PEAK 23(19P13.2) WILD-TYPE | 90 | 58 | 51 | 88 |
P value = 2.97e-06 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
AMP PEAK 23(19P13.2) MUTATED | 72 | 54 | 95 |
AMP PEAK 23(19P13.2) WILD-TYPE | 45 | 117 | 125 |
P value = 0.000241 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
AMP PEAK 23(19P13.2) MUTATED | 97 | 62 | 77 |
AMP PEAK 23(19P13.2) WILD-TYPE | 80 | 122 | 108 |
P value = 2.05e-25 (Fisher's exact test), Q value = 1.5e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 23(19P13.2) MUTATED | 45 | 152 | 50 |
AMP PEAK 23(19P13.2) WILD-TYPE | 114 | 60 | 150 |
P value = 2.61e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 33 | 104 |
AMP PEAK 23(19P13.2) MUTATED | 42 | 9 | 34 |
AMP PEAK 23(19P13.2) WILD-TYPE | 22 | 24 | 70 |
P value = 9.69e-11 (Fisher's exact test), Q value = 6.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
AMP PEAK 24(19Q12) MUTATED | 55 | 31 | 85 | 17 |
AMP PEAK 24(19Q12) WILD-TYPE | 92 | 65 | 67 | 96 |
P value = 2.58e-08 (Fisher's exact test), Q value = 1.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
AMP PEAK 24(19Q12) MUTATED | 63 | 36 | 89 |
AMP PEAK 24(19Q12) WILD-TYPE | 54 | 135 | 131 |
P value = 1.29e-19 (Fisher's exact test), Q value = 9.1e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 24(19Q12) MUTATED | 40 | 131 | 42 |
AMP PEAK 24(19Q12) WILD-TYPE | 119 | 81 | 158 |
P value = 0.000131 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 33 | 104 |
AMP PEAK 24(19Q12) MUTATED | 36 | 7 | 28 |
AMP PEAK 24(19Q12) WILD-TYPE | 28 | 26 | 76 |
P value = 0.000412 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
AMP PEAK 25(21Q21.1) MUTATED | 29 | 12 | 28 |
AMP PEAK 25(21Q21.1) WILD-TYPE | 130 | 200 | 172 |
P value = 3.15e-05 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 2(1P36.23) MUTATED | 36 | 71 | 29 |
DEL PEAK 2(1P36.23) WILD-TYPE | 123 | 141 | 171 |
P value = 5.28e-06 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 7(2Q22.1) MUTATED | 26 | 5 | 14 |
DEL PEAK 7(2Q22.1) WILD-TYPE | 133 | 207 | 186 |
P value = 2.76e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 10(3Q13.31) MUTATED | 26 | 7 | 25 |
DEL PEAK 10(3Q13.31) WILD-TYPE | 133 | 205 | 175 |
P value = 1.14e-06 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 14(4Q34.3) MUTATED | 45 | 17 | 29 |
DEL PEAK 14(4Q34.3) WILD-TYPE | 114 | 195 | 171 |
P value = 2.52e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 15(5Q35.3) MUTATED | 8 | 21 | 6 | 14 |
DEL PEAK 15(5Q35.3) WILD-TYPE | 139 | 75 | 146 | 99 |
P value = 0.00034 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 15(5Q35.3) MUTATED | 6 | 30 | 8 | 6 |
DEL PEAK 15(5Q35.3) WILD-TYPE | 150 | 153 | 79 | 114 |
P value = 7.09e-06 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 15(5Q35.3) MUTATED | 18 | 5 | 30 |
DEL PEAK 15(5Q35.3) WILD-TYPE | 141 | 207 | 170 |
P value = 5.52e-08 (Fisher's exact test), Q value = 3.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 16(6Q22.31) MUTATED | 72 | 46 | 39 |
DEL PEAK 16(6Q22.31) WILD-TYPE | 87 | 166 | 161 |
P value = 0.000215 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 17(6Q26) MUTATED | 68 | 65 | 45 |
DEL PEAK 17(6Q26) WILD-TYPE | 91 | 147 | 155 |
P value = 5.8e-06 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 19(9P21.3) MUTATED | 100 | 61 | 133 | 75 |
DEL PEAK 19(9P21.3) WILD-TYPE | 47 | 35 | 19 | 38 |
P value = 1.12e-07 (Fisher's exact test), Q value = 7.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 19(9P21.3) MUTATED | 107 | 111 | 151 |
DEL PEAK 19(9P21.3) WILD-TYPE | 10 | 60 | 69 |
P value = 4.2e-13 (Fisher's exact test), Q value = 2.9e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 19(9P21.3) MUTATED | 104 | 191 | 121 |
DEL PEAK 19(9P21.3) WILD-TYPE | 55 | 21 | 79 |
P value = 4.32e-06 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 21(10P15.3) MUTATED | 129 | 63 | 134 | 82 |
DEL PEAK 21(10P15.3) WILD-TYPE | 18 | 33 | 18 | 31 |
P value = 0.000152 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 21(10P15.3) MUTATED | 104 | 120 | 184 |
DEL PEAK 21(10P15.3) WILD-TYPE | 13 | 51 | 36 |
P value = 2.59e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
DEL PEAK 21(10P15.3) MUTATED | 152 | 129 | 162 |
DEL PEAK 21(10P15.3) WILD-TYPE | 25 | 55 | 23 |
P value = 2.34e-20 (Fisher's exact test), Q value = 1.6e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 21(10P15.3) MUTATED | 146 | 199 | 120 |
DEL PEAK 21(10P15.3) WILD-TYPE | 13 | 13 | 80 |
P value = 6.76e-07 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 22(10P13) MUTATED | 131 | 65 | 135 | 79 |
DEL PEAK 22(10P13) WILD-TYPE | 16 | 31 | 17 | 34 |
P value = 1.51e-05 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 22(10P13) MUTATED | 104 | 118 | 188 |
DEL PEAK 22(10P13) WILD-TYPE | 13 | 53 | 32 |
P value = 5.14e-06 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
DEL PEAK 22(10P13) MUTATED | 152 | 129 | 165 |
DEL PEAK 22(10P13) WILD-TYPE | 25 | 55 | 20 |
P value = 5.61e-22 (Fisher's exact test), Q value = 4e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 22(10P13) MUTATED | 146 | 201 | 119 |
DEL PEAK 22(10P13) WILD-TYPE | 13 | 11 | 81 |
P value = 0.00016 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
DEL PEAK 22(10P13) MUTATED | 50 | 38 | 42 | 37 |
DEL PEAK 22(10P13) WILD-TYPE | 4 | 20 | 2 | 8 |
P value = 1.14e-09 (Fisher's exact test), Q value = 7.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 23(10P11.23) MUTATED | 130 | 61 | 142 | 83 |
DEL PEAK 23(10P11.23) WILD-TYPE | 17 | 35 | 10 | 30 |
P value = 1.9e-07 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 23(10P11.23) MUTATED | 110 | 119 | 187 |
DEL PEAK 23(10P11.23) WILD-TYPE | 7 | 52 | 33 |
P value = 0.000104 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
DEL PEAK 23(10P11.23) MUTATED | 145 | 139 | 67 | 99 |
DEL PEAK 23(10P11.23) WILD-TYPE | 11 | 44 | 20 | 21 |
P value = 1.16e-06 (Fisher's exact test), Q value = 0.00076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
DEL PEAK 23(10P11.23) MUTATED | 157 | 129 | 164 |
DEL PEAK 23(10P11.23) WILD-TYPE | 20 | 55 | 21 |
P value = 4.01e-25 (Fisher's exact test), Q value = 2.8e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 23(10P11.23) MUTATED | 147 | 205 | 119 |
DEL PEAK 23(10P11.23) WILD-TYPE | 12 | 7 | 81 |
P value = 1.25e-06 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 24(10Q23.31) MUTATED | 136 | 75 | 147 | 91 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 11 | 21 | 5 | 22 |
P value = 3.93e-05 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 24(10Q23.31) MUTATED | 113 | 137 | 199 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 4 | 34 | 21 |
P value = 0.000287 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
DEL PEAK 24(10Q23.31) MUTATED | 163 | 149 | 173 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 14 | 35 | 12 |
P value = 1.81e-18 (Fisher's exact test), Q value = 1.3e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 24(10Q23.31) MUTATED | 152 | 210 | 146 |
DEL PEAK 24(10Q23.31) WILD-TYPE | 7 | 2 | 54 |
P value = 3.21e-07 (Fisher's exact test), Q value = 0.00021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 25(10Q26.3) MUTATED | 136 | 75 | 148 | 91 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 11 | 21 | 4 | 22 |
P value = 5.06e-06 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 25(10Q26.3) MUTATED | 115 | 138 | 197 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 2 | 33 | 23 |
P value = 1.13e-15 (Fisher's exact test), Q value = 7.9e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 25(10Q26.3) MUTATED | 149 | 210 | 150 |
DEL PEAK 25(10Q26.3) WILD-TYPE | 10 | 2 | 50 |
P value = 2.19e-09 (Fisher's exact test), Q value = 1.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 26(11P15.5) MUTATED | 32 | 42 | 13 | 31 |
DEL PEAK 26(11P15.5) WILD-TYPE | 115 | 54 | 139 | 82 |
P value = 2.01e-07 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 26(11P15.5) MUTATED | 10 | 61 | 47 |
DEL PEAK 26(11P15.5) WILD-TYPE | 107 | 110 | 173 |
P value = 0.000354 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
DEL PEAK 26(11P15.5) MUTATED | 31 | 61 | 33 |
DEL PEAK 26(11P15.5) WILD-TYPE | 146 | 123 | 152 |
P value = 3.49e-14 (Fisher's exact test), Q value = 2.4e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 26(11P15.5) MUTATED | 59 | 13 | 55 |
DEL PEAK 26(11P15.5) WILD-TYPE | 100 | 199 | 145 |
P value = 1.11e-07 (Fisher's exact test), Q value = 7.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 27(11P11.2) MUTATED | 27 | 35 | 10 | 23 |
DEL PEAK 27(11P11.2) WILD-TYPE | 120 | 61 | 142 | 90 |
P value = 0.000177 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 27(11P11.2) MUTATED | 10 | 47 | 38 |
DEL PEAK 27(11P11.2) WILD-TYPE | 107 | 124 | 182 |
P value = 4.43e-12 (Fisher's exact test), Q value = 3.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 27(11P11.2) MUTATED | 53 | 11 | 39 |
DEL PEAK 27(11P11.2) WILD-TYPE | 106 | 201 | 161 |
P value = 7.97e-07 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 28(11Q14.1) MUTATED | 30 | 33 | 12 | 13 |
DEL PEAK 28(11Q14.1) WILD-TYPE | 117 | 63 | 140 | 100 |
P value = 1.16e-15 (Fisher's exact test), Q value = 8.1e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 28(11Q14.1) MUTATED | 59 | 10 | 26 |
DEL PEAK 28(11Q14.1) WILD-TYPE | 100 | 202 | 174 |
P value = 9.15e-05 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 30(12Q12) MUTATED | 33 | 13 | 30 |
DEL PEAK 30(12Q12) WILD-TYPE | 126 | 199 | 170 |
P value = 0.000187 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 31(12Q15) MUTATED | 21 | 21 | 7 | 20 |
DEL PEAK 31(12Q15) WILD-TYPE | 126 | 75 | 145 | 93 |
P value = 6.13e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 31(12Q15) MUTATED | 4 | 35 | 30 |
DEL PEAK 31(12Q15) WILD-TYPE | 113 | 136 | 190 |
P value = 1.44e-06 (Fisher's exact test), Q value = 0.00094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 31(12Q15) MUTATED | 37 | 11 | 29 |
DEL PEAK 31(12Q15) WILD-TYPE | 122 | 201 | 171 |
P value = 1.6e-07 (Fisher's exact test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 32(13Q14.2) MUTATED | 81 | 45 | 36 | 53 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 66 | 51 | 116 | 60 |
P value = 3.82e-05 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 32(13Q14.2) MUTATED | 29 | 78 | 108 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 88 | 93 | 112 |
P value = 4.79e-23 (Fisher's exact test), Q value = 3.4e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 32(13Q14.2) MUTATED | 108 | 37 | 92 |
DEL PEAK 32(13Q14.2) WILD-TYPE | 51 | 175 | 108 |
P value = 1.29e-05 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 33(14Q13.1) MUTATED | 54 | 39 | 25 | 43 |
DEL PEAK 33(14Q13.1) WILD-TYPE | 93 | 57 | 127 | 70 |
P value = 8.8e-21 (Fisher's exact test), Q value = 6.2e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 33(14Q13.1) MUTATED | 93 | 26 | 57 |
DEL PEAK 33(14Q13.1) WILD-TYPE | 66 | 186 | 143 |
P value = 1.29e-07 (Fisher's exact test), Q value = 8.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 34(14Q24.2) MUTATED | 51 | 43 | 22 | 45 |
DEL PEAK 34(14Q24.2) WILD-TYPE | 96 | 53 | 130 | 68 |
P value = 1.05e-27 (Fisher's exact test), Q value = 7.5e-25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 34(14Q24.2) MUTATED | 95 | 16 | 61 |
DEL PEAK 34(14Q24.2) WILD-TYPE | 64 | 196 | 139 |
P value = 2.27e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 35(15Q14) MUTATED | 36 | 37 | 23 | 42 |
DEL PEAK 35(15Q14) WILD-TYPE | 111 | 59 | 129 | 71 |
P value = 6.61e-08 (Fisher's exact test), Q value = 4.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 35(15Q14) MUTATED | 14 | 71 | 53 |
DEL PEAK 35(15Q14) WILD-TYPE | 103 | 100 | 167 |
P value = 0.000116 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 177 | 184 | 185 |
DEL PEAK 35(15Q14) MUTATED | 51 | 63 | 29 |
DEL PEAK 35(15Q14) WILD-TYPE | 126 | 121 | 156 |
P value = 7.91e-07 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 35(15Q14) MUTATED | 66 | 36 | 48 |
DEL PEAK 35(15Q14) WILD-TYPE | 93 | 176 | 152 |
P value = 1.47e-08 (Fisher's exact test), Q value = 1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 38(17P13.2) MUTATED | 41 | 10 | 35 |
DEL PEAK 38(17P13.2) WILD-TYPE | 118 | 202 | 165 |
P value = 7.79e-13 (Fisher's exact test), Q value = 5.4e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 39(17P13.1) MUTATED | 50 | 8 | 37 |
DEL PEAK 39(17P13.1) WILD-TYPE | 109 | 204 | 163 |
P value = 8.51e-06 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
DEL PEAK 40(17Q11.2) MUTATED | 35 | 9 | 12 | 5 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 112 | 87 | 140 | 108 |
P value = 1.6e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 40(17Q11.2) MUTATED | 31 | 10 | 30 |
DEL PEAK 40(17Q11.2) WILD-TYPE | 128 | 202 | 170 |
P value = 2.2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 41(18Q22.3) MUTATED | 37 | 14 | 30 |
DEL PEAK 41(18Q22.3) WILD-TYPE | 122 | 198 | 170 |
P value = 0.000211 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 171 | 220 |
DEL PEAK 42(19Q13.41) MUTATED | 12 | 47 | 31 |
DEL PEAK 42(19Q13.41) WILD-TYPE | 105 | 124 | 189 |
P value = 2.67e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 44(22Q13.32) MUTATED | 82 | 61 | 68 |
DEL PEAK 44(22Q13.32) WILD-TYPE | 77 | 151 | 132 |
P value = 3.01e-08 (Fisher's exact test), Q value = 2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 45(XP22.2) MUTATED | 58 | 25 | 33 |
DEL PEAK 45(XP22.2) WILD-TYPE | 101 | 187 | 167 |
P value = 3.37e-11 (Fisher's exact test), Q value = 2.3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
DEL PEAK 46(XQ23) MUTATED | 60 | 27 | 20 |
DEL PEAK 46(XQ23) WILD-TYPE | 99 | 185 | 180 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtype file = GBM-TP.transferedmergedcluster.txt
-
Number of patients = 571
-
Number of significantly focal cnvs = 71
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.