Clinical Features	Time to Death		AGE		NEOPLASM.DISEASESTAGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		PATHOLOGY.M.STAGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		NUMBERPACKYEARSSMOKED	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q
1p gain	22 (4%)	476	0.0027093	1	0.30328	1	0.3243	1	0.32803	1	0.21428	1	0.44797	1	1	1	0.48178	1	NA	NA
1q gain	50 (10%)	448	0.08328	1	0.069064	1	0.13231	1	0.16883	1	0.42695	1	0.76853	1	0.75508	1	0.49947	1	NA	NA
2p gain	75 (15%)	423	0.81344	1	0.14769	1	0.18808	1	0.46291	1	1	1	0.32342	1	0.79397	1	0.49074	1	NA	NA
2q gain	76 (15%)	422	0.6634	1	0.1997	1	0.3267	1	0.71543	1	1	1	0.26575	1	0.36134	1	0.387	1	NA	NA
3p gain	20 (4%)	478	0.078324	1	0.85202	1	0.10323	1	0.17668	1	0.05869	1	0.21124	1	0.34373	1	0.32801	1	NA	NA
3q gain	59 (12%)	439	0.39351	1	0.62511	1	0.0023347	1	0.00033898	0.198	0.007529	1	0.018032	1	1	1	0.19258	1	NA	NA
4p gain	13 (3%)	485	0.098402	1	0.86547	1	0.46788	1	0.20912	1	0.49979	1	1	1	0.55687	1	NA	NA	NA	NA
4q gain	13 (3%)	485	0.29586	1	0.86547	1	0.57501	1	0.75537	1	0.45905	1	0.72519	1	1	1	NA	NA	NA	NA
5p gain	186 (37%)	312	0.057615	1	0.00019858	0.117	0.16058	1	0.29751	1	0.62048	1	0.69578	1	0.025449	1	0.57238	1	NA	NA
5q gain	199 (40%)	299	0.06091	1	0.00060845	0.35	0.41482	1	0.45641	1	1	1	0.7307	1	0.034806	1	0.57238	1	NA	NA
6p gain	11 (2%)	487	0.74389	1	0.7748	1	0.38366	1	0.27359	1	1	1	0.70731	1	0.34401	1	NA	NA	NA	NA
6q gain	9 (2%)	489	0.536	1	0.32069	1	0.26764	1	0.29831	1	1	1	1	1	0.17221	1	NA	NA	NA	NA
7p gain	166 (33%)	332	0.99979	1	0.44315	1	0.085725	1	0.13718	1	0.44915	1	0.048743	1	0.003748	1	0.71059	1	NA	NA
7q gain	167 (34%)	331	0.51081	1	0.49822	1	0.019044	1	0.066275	1	0.44254	1	0.0049245	1	0.0096766	1	0.52845	1	NA	NA
8p gain	29 (6%)	469	0.54334	1	0.24924	1	0.0056185	1	0.0041898	1	1	1	0.32771	1	0.84106	1	0.75713	1	NA	NA
8q gain	57 (11%)	441	0.3418	1	0.074523	1	0.019685	1	0.0056116	1	0.42695	1	0.15606	1	0.30218	1	0.47135	1	NA	NA
9p gain	13 (3%)	485	0.26867	1	0.56328	1	0.94748	1	0.052116	1	1	1	0.29554	1	0.01455	1	NA	NA	NA	NA
9q gain	12 (2%)	486	0.96114	1	0.33749	1	0.24329	1	0.0031498	1	1	1	1	1	0.12131	1	NA	NA	NA	NA
10p gain	17 (3%)	481	0.77438	1	0.14767	1	0.35574	1	0.10497	1	0.10817	1	0.76528	1	0.79758	1	0.88715	1	NA	NA
10q gain	12 (2%)	486	0.66325	1	0.040479	1	0.82718	1	0.88388	1	0.26258	1	1	1	0.35698	1	0.80952	1	NA	NA
11p gain	31 (6%)	467	0.99692	1	0.93226	1	0.048428	1	0.022189	1	1	1	0.045014	1	0.84732	1	0.48357	1	NA	NA
11q gain	29 (6%)	469	0.4905	1	0.99903	1	0.24268	1	0.1256	1	1	1	0.10152	1	1	1	NA	NA	NA	NA
12p gain	117 (23%)	381	0.0091528	1	0.044497	1	0.0016671	0.945	0.0051253	1	0.25839	1	0.046973	1	0.58072	1	0.26785	1	NA	NA
12q gain	117 (23%)	381	0.013872	1	0.10042	1	0.0016671	0.945	0.0051253	1	0.40435	1	0.046973	1	0.58072	1	0.26785	1	NA	NA
13q gain	22 (4%)	476	0.22573	1	0.33795	1	0.17793	1	0.26407	1	1	1	0.44797	1	0.26059	1	NA	NA	NA	NA
14q gain	16 (3%)	482	0.15175	1	0.56605	1	0.28478	1	0.0079259	1	1	1	0.36197	1	1	1	NA	NA	NA	NA
15q gain	26 (5%)	472	0.27124	1	0.3781	1	0.64927	1	0.45816	1	0.21428	1	0.64512	1	0.83294	1	0.34873	1	NA	NA
16p gain	104 (21%)	394	0.39267	1	0.24573	1	0.2256	1	0.12901	1	0.13308	1	0.54745	1	0.81798	1	0.44888	1	NA	NA
16q gain	96 (19%)	402	0.23809	1	0.31256	1	0.23003	1	0.082306	1	0.21154	1	0.7032	1	0.90527	1	0.30978	1	NA	NA
17p gain	25 (5%)	473	0.90993	1	0.36474	1	0.076631	1	0.82235	1	0.21428	1	0.045892	1	0.8328	1	0.73985	1	NA	NA
17q gain	31 (6%)	467	0.57597	1	0.37571	1	0.51954	1	0.73213	1	0.29975	1	0.34201	1	1	1	0.47135	1	NA	NA
18p gain	25 (5%)	473	0.045641	1	0.66086	1	0.66742	1	0.89348	1	1	1	0.48653	1	0.083195	1	NA	NA	NA	NA
18q gain	25 (5%)	473	0.11008	1	0.51702	1	0.54126	1	0.80683	1	0.60533	1	0.48653	1	0.083195	1	NA	NA	NA	NA
19p gain	51 (10%)	447	0.97809	1	0.641	1	0.01105	1	0.02505	1	0.40531	1	0.023552	1	0.27987	1	0.71614	1	NA	NA
19q gain	57 (11%)	441	0.55506	1	0.40468	1	0.0030183	1	0.010399	1	0.43922	1	0.010554	1	0.30218	1	0.71614	1	NA	NA
20p gain	110 (22%)	388	0.18741	1	0.1938	1	8.7932e-05	0.052	5.3546e-06	0.00321	0.54683	1	0.024248	1	0.0014093	0.8	0.37321	1	NA	NA
20q gain	113 (23%)	385	0.1429	1	0.061394	1	6.0407e-05	0.0358	1.9034e-05	0.0113	0.23877	1	0.033155	1	0.0068287	1	0.37321	1	NA	NA
21q gain	48 (10%)	450	0.56696	1	0.11463	1	0.23061	1	0.11252	1	1	1	0.65638	1	0.42951	1	0.29715	1	NA	NA
22q gain	40 (8%)	458	0.48188	1	0.48107	1	0.83122	1	0.12134	1	1	1	0.86036	1	0.38773	1	0.82882	1	NA	NA
xq gain	29 (6%)	469	0.84088	1	0.81658	1	0.086344	1	0.14467	1	1	1	0.015735	1	0.69278	1	0.32801	1	NA	NA
1p loss	56 (11%)	442	0.56543	1	0.082242	1	0.37092	1	0.01072	1	0.70201	1	0.5341	1	0.23319	1	0.29715	1	NA	NA
1q loss	36 (7%)	462	0.71	1	0.62862	1	0.76793	1	0.07647	1	1	1	0.39635	1	0.71686	1	0.48357	1	NA	NA
2p loss	14 (3%)	484	0.99807	1	0.92966	1	0.4204	1	0.12808	1	1	1	0.73162	1	0.77937	1	NA	NA	NA	NA
2q loss	14 (3%)	484	0.98358	1	0.91077	1	0.56364	1	0.22354	1	1	1	0.73162	1	0.77937	1	NA	NA	NA	NA
3p loss	358 (72%)	140	0.5733	1	0.72729	1	0.016632	1	0.032355	1	0.79293	1	0.14885	1	0.021148	1	0.078532	1	NA	NA
3q loss	99 (20%)	399	0.73006	1	0.014166	1	0.63607	1	0.27477	1	0.74556	1	0.14642	1	0.00059548	0.344	0.38353	1	NA	NA
4p loss	71 (14%)	427	1.6762e-05	0.00999	0.97059	1	0.00045189	0.262	0.00028481	0.167	0.72671	1	0.056915	1	0.89376	1	0.12984	1	NA	NA
4q loss	65 (13%)	433	2.8539e-06	0.00172	0.89952	1	1.6308e-05	0.00974	6.6286e-06	0.00397	0.46604	1	0.0084775	1	0.33268	1	0.19258	1	NA	NA
5p loss	7 (1%)	491	0.01866	1	0.29108	1	0.0018913	1	0.00019454	0.115	1	1	0.12024	1	0.24334	1	NA	NA	NA	NA
5q loss	6 (1%)	492	0.052075	1	0.2319	1	0.0066195	1	0.00045096	0.262	1	1	0.26808	1	0.42313	1	NA	NA	NA	NA
6p loss	98 (20%)	400	0.39241	1	0.42803	1	0.071054	1	0.043993	1	0.0050768	1	0.41224	1	0.0020017	1	0.12207	1	NA	NA
6q loss	123 (25%)	375	0.49324	1	0.89919	1	0.28616	1	0.19195	1	0.0012184	0.693	0.7189	1	0.063691	1	0.21038	1	NA	NA
7q loss	3 (1%)	495	0.52495	1	0.55813	1	0.12731	1	0.010952	1	0.072874	1	1	1	0.55483	1	NA	NA	NA	NA
8p loss	134 (27%)	364	0.35364	1	0.686	1	0.4055	1	0.32926	1	0.776	1	0.42239	1	0.072221	1	0.89335	1	NA	NA
8q loss	65 (13%)	433	0.64868	1	0.95821	1	0.63075	1	0.25515	1	0.46604	1	0.81546	1	0.017389	1	0.65438	1	NA	NA
9p loss	144 (29%)	354	1.1738e-05	0.00702	0.06911	1	4.5768e-06	0.00276	5.5146e-05	0.0327	0.1008	1	0.0017523	0.988	0.00087347	0.501	0.57585	1	NA	NA
9q loss	145 (29%)	353	0.00023928	0.14	0.04981	1	1.6608e-06	0.001	5.1914e-06	0.00312	0.17103	1	0.0046509	1	0.00062957	0.362	0.48674	1	NA	NA
10p loss	65 (13%)	433	0.38249	1	0.49178	1	0.080953	1	0.0097382	1	0.14015	1	0.72621	1	0.33268	1	0.026887	1	NA	NA
10q loss	86 (17%)	412	0.47334	1	0.50729	1	0.093533	1	0.0023191	1	0.32176	1	0.78913	1	0.10526	1	0.11154	1	NA	NA
11p loss	18 (4%)	480	0.011193	1	0.14418	1	0.47612	1	0.44359	1	0.15932	1	0.55678	1	1	1	0.80952	1	NA	NA
11q loss	23 (5%)	475	0.0097942	1	0.022645	1	0.70429	1	0.62744	1	0.24257	1	0.4672	1	0.50224	1	0.88715	1	NA	NA
12p loss	3 (1%)	495	0.32389	1	0.7536	1	0.49127	1	0.74289	1	1	1	1	1	1	1	NA	NA	NA	NA
12q loss	4 (1%)	494	0.96394	1	0.34208	1	0.17355	1	0.41444	1	1	1	1	1	1	1	NA	NA	NA	NA
13q loss	69 (14%)	429	0.0010587	0.606	0.55846	1	0.00021051	0.124	3.1362e-06	0.00189	0.32273	1	0.10478	1	0.34046	1	0.66921	1	NA	NA
14q loss	209 (42%)	289	0.0010708	0.611	0.16499	1	4.3785e-05	0.026	0.00032178	0.188	0.0024789	1	0.0017305	0.978	0.070661	1	0.087172	1	NA	NA
15q loss	35 (7%)	463	0.002439	1	0.83301	1	0.0011273	0.643	0.00044539	0.259	1	1	0.033817	1	0.065879	1	0.48357	1	NA	NA
16p loss	9 (2%)	489	0.12946	1	0.84332	1	0.25902	1	0.0091178	1	0.36799	1	1	1	1	1	NA	NA	NA	NA
16q loss	13 (3%)	485	0.21443	1	0.91326	1	0.30563	1	0.0039197	1	0.45905	1	1	1	1	1	NA	NA	NA	NA
17p loss	44 (9%)	454	0.37702	1	0.43535	1	0.22203	1	0.18357	1	0.37576	1	0.085181	1	0.18558	1	0.026091	1	NA	NA
17q loss	28 (6%)	470	0.45678	1	0.82907	1	0.36111	1	0.34357	1	1	1	0.3114	1	0.31183	1	NA	NA	NA	NA
18p loss	91 (18%)	407	0.0028608	1	0.12308	1	0.00057289	0.331	0.00035885	0.209	1	1	0.17171	1	0.18245	1	0.49357	1	NA	NA
18q loss	93 (19%)	405	0.011301	1	0.13802	1	0.012009	1	0.0062397	1	1	1	0.19319	1	0.14754	1	0.56868	1	NA	NA
19p loss	11 (2%)	487	0.00016959	0.1	0.039112	1	0.032945	1	0.00089303	0.512	1	1	0.43113	1	0.75495	1	NA	NA	NA	NA
19q loss	4 (1%)	494	0.0040431	1	0.82926	1	0.24451	1	0.0030859	1	1	1	0.13991	1	1	1	NA	NA	NA	NA
20p loss	8 (2%)	490	0.82434	1	0.70403	1	0.72698	1	0.61713	1	1	1	0.39717	1	1	1	NA	NA	NA	NA
20q loss	3 (1%)	495	0.80828	1	0.18148	1	0.24398	1	0.11131	1	NA	NA	0.41358	1	1	1	NA	NA	NA	NA
21q loss	53 (11%)	445	0.63825	1	0.58741	1	0.19749	1	0.0040648	1	0.093854	1	1	1	0.76087	1	0.50473	1	NA	NA
22q loss	38 (8%)	460	0.002097	1	0.2673	1	0.020275	1	0.1604	1	1	1	0.16297	1	0.7262	1	0.11501	1	NA	NA
xq loss	44 (9%)	454	0.2443	1	0.42166	1	0.66038	1	0.20971	1	0.32832	1	1	1	0.18558	1	NA	NA	NA	NA