This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 80 arm-level events and 12 molecular subtypes across 514 patients, 200 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF'.
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1q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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2p gain cnv correlated to 'CN_CNMF'.
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2q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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3q gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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4p gain cnv correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q gain cnv correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
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7q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
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8p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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8q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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10p gain cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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11p gain cnv correlated to 'CN_CNMF'.
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11q gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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12q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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17p gain cnv correlated to 'CN_CNMF'.
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17q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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21q gain cnv correlated to 'CN_CNMF'.
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22q gain cnv correlated to 'CN_CNMF'.
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1p loss cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q loss cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q loss cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF'.
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4q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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6q loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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8p loss cnv correlated to 'CN_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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10p loss cnv correlated to 'CN_CNMF'.
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10q loss cnv correlated to 'CN_CNMF'.
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11p loss cnv correlated to 'CN_CNMF'.
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11q loss cnv correlated to 'CN_CNMF'.
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13q loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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14q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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17p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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21q loss cnv correlated to 'CN_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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xq loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | |
14q loss | 214 (42%) | 300 |
3.12e-05 (0.0228) |
4.31e-05 (0.0314) |
6.37e-18 (5.58e-15) |
6.21e-08 (5.01e-05) |
1.01e-13 (8.72e-11) |
1.28e-07 (0.000102) |
1.97e-21 (1.73e-18) |
7.89e-16 (6.88e-13) |
2.41e-11 (2.03e-08) |
0.165 (1.00) |
8.25e-07 (0.000642) |
2.9e-05 (0.0213) |
2p loss | 14 (3%) | 500 |
3.58e-05 (0.0261) |
6.3e-05 (0.0454) |
1.38e-06 (0.00107) |
0.668 (1.00) |
4.58e-05 (0.0334) |
2.35e-06 (0.00181) |
2.39e-07 (0.00019) |
4.73e-09 (3.88e-06) |
8.4e-05 (0.0602) |
4.5e-12 (3.82e-09) |
0.0741 (1.00) |
1.64e-13 (1.41e-10) |
2q loss | 14 (3%) | 500 |
0.000249 (0.173) |
0.000389 (0.267) |
1.38e-06 (0.00107) |
1 (1.00) |
0.000316 (0.219) |
2.35e-06 (0.00181) |
2.39e-07 (0.00019) |
6.39e-08 (5.15e-05) |
2.32e-05 (0.0172) |
2.53e-10 (2.1e-07) |
0.0741 (1.00) |
1.64e-13 (1.41e-10) |
20p gain | 111 (22%) | 403 |
0.116 (1.00) |
0.163 (1.00) |
7.57e-22 (6.67e-19) |
5.62e-05 (0.0408) |
1.07e-07 (8.58e-05) |
0.00174 (1.00) |
1.15e-12 (9.78e-10) |
2.16e-12 (1.84e-09) |
3.32e-10 (2.76e-07) |
0.000241 (0.169) |
6.18e-07 (0.000484) |
0.0316 (1.00) |
20q gain | 114 (22%) | 400 |
0.0457 (1.00) |
0.0675 (1.00) |
2.82e-23 (2.49e-20) |
5.62e-05 (0.0408) |
6.76e-09 (5.51e-06) |
0.000896 (0.586) |
2.62e-14 (2.27e-11) |
1.9e-13 (1.62e-10) |
3.55e-11 (2.98e-08) |
0.000154 (0.109) |
2.7e-07 (0.000214) |
0.0197 (1.00) |
6p loss | 99 (19%) | 415 |
0.0113 (1.00) |
0.00282 (1.00) |
8.48e-16 (7.38e-13) |
0.000723 (0.48) |
3.74e-06 (0.00285) |
0.000258 (0.18) |
3.05e-08 (2.47e-05) |
5.76e-07 (0.000452) |
7.99e-11 (6.68e-08) |
0.000278 (0.193) |
4.38e-07 (0.000345) |
0.00961 (1.00) |
9p loss | 146 (28%) | 368 |
0.00417 (1.00) |
0.000533 (0.36) |
2.06e-47 (1.83e-44) |
1.76e-19 (1.54e-16) |
4.89e-06 (0.00372) |
0.000935 (0.608) |
2.12e-22 (1.87e-19) |
1.18e-25 (1.04e-22) |
2.97e-15 (2.57e-12) |
3.49e-05 (0.0255) |
1.04e-10 (8.66e-08) |
0.00242 (1.00) |
9q loss | 147 (29%) | 367 |
0.0101 (1.00) |
0.00143 (0.917) |
3.06e-46 (2.71e-43) |
1.8e-18 (1.58e-15) |
1.06e-06 (0.000824) |
0.00159 (1.00) |
6.79e-23 (5.99e-20) |
3.26e-25 (2.89e-22) |
1.29e-16 (1.13e-13) |
0.000159 (0.112) |
4.55e-10 (3.76e-07) |
0.00043 (0.293) |
18p loss | 91 (18%) | 423 |
0.0574 (1.00) |
0.135 (1.00) |
1.36e-13 (1.17e-10) |
2.68e-07 (0.000212) |
3.07e-08 (2.48e-05) |
0.00183 (1.00) |
7.08e-19 (6.22e-16) |
1.89e-15 (1.64e-12) |
3.61e-11 (3.03e-08) |
1.7e-05 (0.0127) |
4.42e-07 (0.000348) |
0.00862 (1.00) |
18q loss | 93 (18%) | 421 |
0.0468 (1.00) |
0.0649 (1.00) |
2.29e-13 (1.96e-10) |
1.97e-06 (0.00152) |
1.99e-07 (0.000158) |
0.0067 (1.00) |
6.42e-18 (5.61e-15) |
4.1e-15 (3.55e-12) |
1.11e-10 (9.2e-08) |
1.4e-05 (0.0105) |
1.68e-07 (0.000134) |
0.00233 (1.00) |
3q gain | 60 (12%) | 454 |
0.0122 (1.00) |
0.0188 (1.00) |
2.99e-11 (2.52e-08) |
0.0111 (1.00) |
0.000564 (0.38) |
5.97e-07 (0.000468) |
1.3e-05 (0.00979) |
1.87e-06 (0.00144) |
1.45e-08 (1.18e-05) |
4.11e-06 (0.00313) |
0.000181 (0.128) |
0.111 (1.00) |
8q gain | 59 (11%) | 455 |
0.226 (1.00) |
0.325 (1.00) |
9.3e-19 (8.15e-16) |
6.54e-06 (0.00496) |
5.21e-05 (0.0379) |
0.0213 (1.00) |
8.36e-12 (7.08e-09) |
1.2e-09 (9.88e-07) |
6.49e-11 (5.44e-08) |
0.0024 (1.00) |
6.51e-07 (0.000508) |
0.00255 (1.00) |
12p gain | 120 (23%) | 394 |
0.0129 (1.00) |
0.0142 (1.00) |
9.53e-14 (8.24e-11) |
0.000174 (0.123) |
1.34e-12 (1.14e-09) |
0.00103 (0.67) |
1.91e-11 (1.61e-08) |
2.37e-12 (2.01e-09) |
1.1e-10 (9.16e-08) |
0.0236 (1.00) |
7.35e-08 (5.91e-05) |
0.00598 (1.00) |
12q gain | 120 (23%) | 394 |
0.0129 (1.00) |
0.0142 (1.00) |
1.74e-13 (1.49e-10) |
0.000118 (0.0845) |
1.87e-13 (1.6e-10) |
0.000431 (0.293) |
6.4e-11 (5.36e-08) |
2.37e-12 (2.01e-09) |
3.2e-11 (2.69e-08) |
0.0518 (1.00) |
7.35e-08 (5.91e-05) |
0.00598 (1.00) |
17p loss | 45 (9%) | 469 |
0.000135 (0.0961) |
0.000271 (0.188) |
5.35e-09 (4.38e-06) |
0.14 (1.00) |
0.00511 (1.00) |
0.00163 (1.00) |
1.61e-06 (0.00124) |
1.4e-07 (0.000112) |
9.59e-08 (7.69e-05) |
1.69e-06 (0.00131) |
0.0335 (1.00) |
0.0199 (1.00) |
3p loss | 370 (72%) | 144 |
0.00349 (1.00) |
0.000663 (0.443) |
4.72e-24 (4.18e-21) |
0.0207 (1.00) |
0.0197 (1.00) |
0.00482 (1.00) |
1.72e-08 (1.39e-05) |
3.36e-10 (2.78e-07) |
0.0164 (1.00) |
2.81e-05 (0.0207) |
0.128 (1.00) |
5.27e-06 (0.004) |
6q loss | 126 (25%) | 388 |
0.0475 (1.00) |
0.0212 (1.00) |
6.58e-15 (5.69e-12) |
0.0434 (1.00) |
2.57e-05 (0.019) |
0.00327 (1.00) |
0.000134 (0.0952) |
0.00497 (1.00) |
3.86e-07 (0.000304) |
0.0233 (1.00) |
0.000132 (0.0938) |
0.0801 (1.00) |
13q loss | 69 (13%) | 445 |
0.00304 (1.00) |
0.00455 (1.00) |
9.33e-11 (7.79e-08) |
0.000737 (0.489) |
7.66e-06 (0.00579) |
0.00307 (1.00) |
4.1e-06 (0.00312) |
3.54e-07 (0.00028) |
3.23e-06 (0.00247) |
0.00194 (1.00) |
0.05 (1.00) |
0.00844 (1.00) |
17q loss | 28 (5%) | 486 |
0.000618 (0.414) |
0.000912 (0.595) |
2.42e-06 (0.00186) |
0.585 (1.00) |
0.157 (1.00) |
0.0237 (1.00) |
0.000386 (0.265) |
5.87e-05 (0.0424) |
1.14e-05 (0.00863) |
9.14e-07 (0.000711) |
0.16 (1.00) |
1.81e-05 (0.0135) |
8p gain | 31 (6%) | 483 |
6.29e-09 (5.13e-06) |
0.000964 (0.627) |
0.0096 (1.00) |
0.202 (1.00) |
1.91e-05 (0.0142) |
0.000329 (0.227) |
6.98e-06 (0.00529) |
0.00582 (1.00) |
0.0052 (1.00) |
0.0485 (1.00) |
||
22q loss | 39 (8%) | 475 |
0.0101 (1.00) |
0.0155 (1.00) |
5.85e-09 (4.78e-06) |
0.00695 (1.00) |
0.00423 (1.00) |
0.0358 (1.00) |
6.24e-07 (0.000488) |
2.84e-06 (0.00218) |
1.18e-05 (0.00885) |
0.127 (1.00) |
0.000656 (0.439) |
0.498 (1.00) |
1q gain | 51 (10%) | 463 |
0.41 (1.00) |
0.411 (1.00) |
1.74e-15 (1.51e-12) |
0.0369 (1.00) |
0.0875 (1.00) |
0.0312 (1.00) |
1.85e-05 (0.0137) |
0.000364 (0.251) |
2.16e-05 (0.016) |
0.954 (1.00) |
0.0308 (1.00) |
0.013 (1.00) |
7p gain | 168 (33%) | 346 |
0.416 (1.00) |
0.577 (1.00) |
9.53e-14 (8.24e-11) |
0.00627 (1.00) |
1.61e-05 (0.012) |
0.00178 (1.00) |
0.000127 (0.0908) |
0.00181 (1.00) |
0.00635 (1.00) |
0.648 (1.00) |
0.0377 (1.00) |
0.261 (1.00) |
7q gain | 169 (33%) | 345 |
0.416 (1.00) |
0.577 (1.00) |
1.24e-13 (1.06e-10) |
0.0156 (1.00) |
2.78e-05 (0.0205) |
0.000692 (0.461) |
0.000144 (0.102) |
0.00159 (1.00) |
0.00797 (1.00) |
0.429 (1.00) |
0.052 (1.00) |
0.0375 (1.00) |
19q gain | 57 (11%) | 457 |
0.102 (1.00) |
0.149 (1.00) |
2.36e-11 (1.99e-08) |
0.000287 (0.199) |
0.00102 (0.662) |
0.00619 (1.00) |
0.00197 (1.00) |
0.000775 (0.512) |
2.97e-05 (0.0218) |
0.00333 (1.00) |
0.00805 (1.00) |
0.828 (1.00) |
1p loss | 56 (11%) | 458 |
0.00128 (0.822) |
0.000389 (0.267) |
1.1e-09 (9.04e-07) |
0.469 (1.00) |
0.000492 (0.333) |
0.178 (1.00) |
0.137 (1.00) |
0.00262 (1.00) |
0.0346 (1.00) |
1.97e-08 (1.6e-05) |
0.394 (1.00) |
0.000248 (0.173) |
1q loss | 36 (7%) | 478 |
0.0107 (1.00) |
0.0133 (1.00) |
5.03e-10 (4.16e-07) |
0.289 (1.00) |
0.0102 (1.00) |
0.0695 (1.00) |
0.00416 (1.00) |
0.000678 (0.452) |
0.0421 (1.00) |
2.54e-08 (2.05e-05) |
0.488 (1.00) |
1.41e-05 (0.0106) |
15q loss | 35 (7%) | 479 |
0.118 (1.00) |
0.127 (1.00) |
2.59e-10 (2.15e-07) |
0.00787 (1.00) |
0.042 (1.00) |
0.414 (1.00) |
3.2e-06 (0.00245) |
8.15e-07 (0.000636) |
0.00231 (1.00) |
0.078 (1.00) |
0.00231 (1.00) |
0.421 (1.00) |
3p gain | 20 (4%) | 494 |
0.0536 (1.00) |
0.0623 (1.00) |
0.00038 (0.262) |
0.585 (1.00) |
0.0444 (1.00) |
0.00059 (0.396) |
0.00506 (1.00) |
0.00213 (1.00) |
6.13e-05 (0.0443) |
0.0002 (0.141) |
0.00202 (1.00) |
0.0628 (1.00) |
4p gain | 13 (3%) | 501 |
0.0668 (1.00) |
0.377 (1.00) |
0.253 (1.00) |
0.00175 (1.00) |
0.000418 (0.285) |
0.0692 (1.00) |
0.000208 (0.146) |
0.0226 (1.00) |
0.0484 (1.00) |
6.88e-05 (0.0495) |
||
4q gain | 13 (3%) | 501 |
0.273 (1.00) |
0.449 (1.00) |
0.253 (1.00) |
0.0201 (1.00) |
0.000418 (0.285) |
0.144 (1.00) |
0.000208 (0.146) |
0.0226 (1.00) |
0.0484 (1.00) |
6.88e-05 (0.0495) |
||
19p gain | 51 (10%) | 463 |
0.226 (1.00) |
0.325 (1.00) |
1.98e-09 (1.63e-06) |
0.00252 (1.00) |
0.00936 (1.00) |
0.0521 (1.00) |
0.00467 (1.00) |
0.00277 (1.00) |
0.000192 (0.135) |
0.00885 (1.00) |
0.0261 (1.00) |
0.942 (1.00) |
4q loss | 65 (13%) | 449 |
0.387 (1.00) |
0.346 (1.00) |
1.04e-11 (8.77e-09) |
0.000529 (0.358) |
0.051 (1.00) |
0.199 (1.00) |
0.00077 (0.509) |
9.78e-06 (0.00739) |
0.382 (1.00) |
0.141 (1.00) |
0.0406 (1.00) |
0.293 (1.00) |
xq loss | 46 (9%) | 468 |
0.0238 (1.00) |
0.00917 (1.00) |
1.97e-05 (0.0146) |
0.0222 (1.00) |
0.143 (1.00) |
0.00382 (1.00) |
0.0553 (1.00) |
0.00419 (1.00) |
0.0158 (1.00) |
1.43e-05 (0.0107) |
0.027 (1.00) |
0.0167 (1.00) |
1p gain | 23 (4%) | 491 |
1 (1.00) |
1 (1.00) |
1.3e-07 (0.000104) |
0.00164 (1.00) |
0.00137 (0.878) |
0.00617 (1.00) |
0.0111 (1.00) |
0.00197 (1.00) |
0.000572 (0.385) |
0.261 (1.00) |
0.025 (1.00) |
0.0244 (1.00) |
2p gain | 76 (15%) | 438 |
0.561 (1.00) |
0.4 (1.00) |
2.53e-09 (2.08e-06) |
0.201 (1.00) |
0.0118 (1.00) |
0.871 (1.00) |
0.165 (1.00) |
0.0351 (1.00) |
0.644 (1.00) |
0.0928 (1.00) |
0.0682 (1.00) |
0.0922 (1.00) |
2q gain | 77 (15%) | 437 |
0.561 (1.00) |
0.4 (1.00) |
2.14e-07 (0.00017) |
0.3 (1.00) |
0.0115 (1.00) |
0.934 (1.00) |
0.156 (1.00) |
0.0354 (1.00) |
0.712 (1.00) |
0.0928 (1.00) |
0.15 (1.00) |
0.0689 (1.00) |
5p gain | 190 (37%) | 324 |
0.835 (1.00) |
0.778 (1.00) |
0.000101 (0.0719) |
0.172 (1.00) |
0.0843 (1.00) |
0.113 (1.00) |
0.0128 (1.00) |
0.00077 (0.509) |
0.109 (1.00) |
0.807 (1.00) |
0.128 (1.00) |
0.54 (1.00) |
10p gain | 17 (3%) | 497 |
0.000929 (0.606) |
0.113 (1.00) |
0.276 (1.00) |
0.472 (1.00) |
0.00084 (0.551) |
0.00018 (0.127) |
0.075 (1.00) |
0.433 (1.00) |
0.466 (1.00) |
0.138 (1.00) |
||
11p gain | 31 (6%) | 483 |
0.232 (1.00) |
0.252 (1.00) |
1.42e-05 (0.0106) |
0.308 (1.00) |
0.195 (1.00) |
0.246 (1.00) |
0.29 (1.00) |
0.182 (1.00) |
0.313 (1.00) |
0.0275 (1.00) |
0.205 (1.00) |
0.33 (1.00) |
11q gain | 29 (6%) | 485 |
0.341 (1.00) |
0.539 (1.00) |
0.000276 (0.191) |
0.188 (1.00) |
0.423 (1.00) |
0.513 (1.00) |
0.549 (1.00) |
0.483 (1.00) |
0.593 (1.00) |
0.0218 (1.00) |
0.523 (1.00) |
0.243 (1.00) |
17p gain | 25 (5%) | 489 |
0.0186 (1.00) |
0.0349 (1.00) |
2.84e-05 (0.0209) |
0.727 (1.00) |
0.329 (1.00) |
0.0734 (1.00) |
0.237 (1.00) |
0.0589 (1.00) |
0.296 (1.00) |
0.0555 (1.00) |
0.291 (1.00) |
0.134 (1.00) |
17q gain | 31 (6%) | 483 |
0.0692 (1.00) |
0.0988 (1.00) |
8.05e-05 (0.0578) |
0.394 (1.00) |
0.493 (1.00) |
0.0761 (1.00) |
0.134 (1.00) |
0.0171 (1.00) |
0.182 (1.00) |
0.0319 (1.00) |
0.112 (1.00) |
0.0667 (1.00) |
21q gain | 50 (10%) | 464 |
0.269 (1.00) |
0.28 (1.00) |
3.43e-06 (0.00262) |
0.00867 (1.00) |
0.0011 (0.711) |
0.509 (1.00) |
0.000705 (0.469) |
0.00189 (1.00) |
0.00908 (1.00) |
1 (1.00) |
0.0574 (1.00) |
0.141 (1.00) |
22q gain | 40 (8%) | 474 |
0.327 (1.00) |
0.0289 (1.00) |
5.78e-05 (0.0418) |
0.679 (1.00) |
0.378 (1.00) |
0.581 (1.00) |
0.11 (1.00) |
0.148 (1.00) |
0.0737 (1.00) |
0.228 (1.00) |
0.0156 (1.00) |
0.168 (1.00) |
4p loss | 71 (14%) | 443 |
0.531 (1.00) |
0.389 (1.00) |
3.04e-09 (2.49e-06) |
0.00136 (0.872) |
0.0845 (1.00) |
0.336 (1.00) |
0.00183 (1.00) |
0.00166 (1.00) |
0.847 (1.00) |
0.312 (1.00) |
0.0743 (1.00) |
0.375 (1.00) |
8p loss | 136 (26%) | 378 |
0.354 (1.00) |
0.426 (1.00) |
8.21e-05 (0.0589) |
0.216 (1.00) |
0.185 (1.00) |
0.291 (1.00) |
0.0692 (1.00) |
0.0661 (1.00) |
0.0835 (1.00) |
0.0542 (1.00) |
0.15 (1.00) |
0.324 (1.00) |
10p loss | 66 (13%) | 448 |
0.173 (1.00) |
0.239 (1.00) |
4.96e-09 (4.06e-06) |
0.0553 (1.00) |
0.742 (1.00) |
0.267 (1.00) |
0.175 (1.00) |
0.316 (1.00) |
0.067 (1.00) |
0.027 (1.00) |
0.0906 (1.00) |
0.084 (1.00) |
10q loss | 87 (17%) | 427 |
0.315 (1.00) |
0.36 (1.00) |
2.12e-08 (1.72e-05) |
0.00715 (1.00) |
0.99 (1.00) |
0.149 (1.00) |
0.11 (1.00) |
0.186 (1.00) |
0.109 (1.00) |
0.128 (1.00) |
0.138 (1.00) |
0.0214 (1.00) |
11p loss | 18 (4%) | 496 |
3.4e-05 (0.0249) |
0.0473 (1.00) |
0.14 (1.00) |
0.553 (1.00) |
0.15 (1.00) |
0.0662 (1.00) |
0.181 (1.00) |
0.0476 (1.00) |
0.0644 (1.00) |
0.114 (1.00) |
||
11q loss | 23 (4%) | 491 |
0.189 (1.00) |
0.207 (1.00) |
5.91e-07 (0.000464) |
0.0143 (1.00) |
0.101 (1.00) |
0.418 (1.00) |
0.0126 (1.00) |
0.00391 (1.00) |
0.0282 (1.00) |
0.113 (1.00) |
0.0285 (1.00) |
0.227 (1.00) |
21q loss | 55 (11%) | 459 |
0.026 (1.00) |
0.0306 (1.00) |
9.25e-09 (7.53e-06) |
0.0241 (1.00) |
0.0277 (1.00) |
0.00788 (1.00) |
0.00573 (1.00) |
0.00135 (0.864) |
0.0099 (1.00) |
0.000849 (0.556) |
0.213 (1.00) |
0.017 (1.00) |
5q gain | 204 (40%) | 310 |
0.292 (1.00) |
0.212 (1.00) |
0.00723 (1.00) |
0.389 (1.00) |
0.398 (1.00) |
0.103 (1.00) |
0.0731 (1.00) |
0.00459 (1.00) |
0.566 (1.00) |
0.367 (1.00) |
0.22 (1.00) |
0.417 (1.00) |
6p gain | 11 (2%) | 503 |
0.202 (1.00) |
0.34 (1.00) |
0.0672 (1.00) |
0.587 (1.00) |
0.794 (1.00) |
0.846 (1.00) |
0.796 (1.00) |
1 (1.00) |
0.845 (1.00) |
0.257 (1.00) |
||
6q gain | 9 (2%) | 505 |
0.0926 (1.00) |
0.569 (1.00) |
0.0168 (1.00) |
0.766 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.779 (1.00) |
1 (1.00) |
0.447 (1.00) |
||
9p gain | 13 (3%) | 501 |
0.0106 (1.00) |
0.902 (1.00) |
0.806 (1.00) |
0.716 (1.00) |
0.238 (1.00) |
0.409 (1.00) |
0.938 (1.00) |
0.0166 (1.00) |
0.727 (1.00) |
0.529 (1.00) |
||
9q gain | 12 (2%) | 502 |
0.000806 (0.53) |
0.835 (1.00) |
0.568 (1.00) |
0.291 (1.00) |
0.251 (1.00) |
0.555 (1.00) |
0.806 (1.00) |
0.0289 (1.00) |
1 (1.00) |
0.737 (1.00) |
||
10q gain | 12 (2%) | 502 |
0.00117 (0.756) |
0.0822 (1.00) |
0.0673 (1.00) |
0.546 (1.00) |
0.0142 (1.00) |
0.00751 (1.00) |
0.0765 (1.00) |
0.348 (1.00) |
0.373 (1.00) |
0.27 (1.00) |
||
13q gain | 22 (4%) | 492 |
0.249 (1.00) |
0.0104 (1.00) |
0.648 (1.00) |
0.569 (1.00) |
0.0747 (1.00) |
0.512 (1.00) |
0.432 (1.00) |
0.712 (1.00) |
0.931 (1.00) |
0.178 (1.00) |
||
14q gain | 16 (3%) | 498 |
0.769 (1.00) |
0.783 (1.00) |
0.00127 (0.82) |
0.328 (1.00) |
0.0121 (1.00) |
0.007 (1.00) |
0.0196 (1.00) |
0.0492 (1.00) |
0.00987 (1.00) |
0.00525 (1.00) |
0.373 (1.00) |
0.0139 (1.00) |
15q gain | 26 (5%) | 488 |
1 (1.00) |
1 (1.00) |
0.00106 (0.683) |
0.599 (1.00) |
0.452 (1.00) |
0.15 (1.00) |
0.63 (1.00) |
0.856 (1.00) |
0.673 (1.00) |
0.284 (1.00) |
0.489 (1.00) |
0.369 (1.00) |
16p gain | 107 (21%) | 407 |
0.282 (1.00) |
0.337 (1.00) |
0.000827 (0.543) |
0.399 (1.00) |
0.00147 (0.936) |
0.0498 (1.00) |
0.0139 (1.00) |
0.00524 (1.00) |
0.0686 (1.00) |
0.687 (1.00) |
0.123 (1.00) |
0.275 (1.00) |
16q gain | 99 (19%) | 415 |
0.233 (1.00) |
0.218 (1.00) |
0.000439 (0.297) |
0.227 (1.00) |
0.0023 (1.00) |
0.0635 (1.00) |
0.0122 (1.00) |
0.0242 (1.00) |
0.0243 (1.00) |
0.517 (1.00) |
0.0301 (1.00) |
0.316 (1.00) |
18p gain | 25 (5%) | 489 |
0.312 (1.00) |
0.252 (1.00) |
0.081 (1.00) |
0.405 (1.00) |
0.832 (1.00) |
0.191 (1.00) |
0.0761 (1.00) |
0.936 (1.00) |
0.687 (1.00) |
0.642 (1.00) |
0.691 (1.00) |
0.177 (1.00) |
18q gain | 25 (5%) | 489 |
0.312 (1.00) |
0.252 (1.00) |
0.117 (1.00) |
0.413 (1.00) |
0.733 (1.00) |
0.51 (1.00) |
0.0761 (1.00) |
0.936 (1.00) |
0.859 (1.00) |
0.642 (1.00) |
0.691 (1.00) |
0.177 (1.00) |
xq gain | 30 (6%) | 484 |
0.389 (1.00) |
0.328 (1.00) |
0.204 (1.00) |
0.705 (1.00) |
0.0217 (1.00) |
0.0119 (1.00) |
0.179 (1.00) |
0.317 (1.00) |
0.437 (1.00) |
0.909 (1.00) |
0.294 (1.00) |
0.191 (1.00) |
3q loss | 102 (20%) | 412 |
0.72 (1.00) |
0.718 (1.00) |
0.000407 (0.278) |
0.359 (1.00) |
0.173 (1.00) |
0.0845 (1.00) |
0.187 (1.00) |
0.29 (1.00) |
0.906 (1.00) |
0.167 (1.00) |
0.185 (1.00) |
0.342 (1.00) |
5p loss | 7 (1%) | 507 |
0.0228 (1.00) |
0.291 (1.00) |
0.657 (1.00) |
0.287 (1.00) |
0.0266 (1.00) |
0.0209 (1.00) |
0.0285 (1.00) |
0.0354 (1.00) |
||||
5q loss | 6 (1%) | 508 |
0.0489 (1.00) |
0.534 (1.00) |
0.471 (1.00) |
0.626 (1.00) |
0.0453 (1.00) |
0.0475 (1.00) |
0.0602 (1.00) |
0.00533 (1.00) |
||||
7p loss | 3 (1%) | 511 |
0.181 (1.00) |
0.0581 (1.00) |
0.128 (1.00) |
0.0556 (1.00) |
0.289 (1.00) |
0.0581 (1.00) |
0.65 (1.00) |
|||||
7q loss | 4 (1%) | 510 |
0.0915 (1.00) |
0.363 (1.00) |
0.098 (1.00) |
1 (1.00) |
0.0491 (1.00) |
0.0615 (1.00) |
0.0335 (1.00) |
0.519 (1.00) |
0.0581 (1.00) |
0.65 (1.00) |
||
8q loss | 67 (13%) | 447 |
0.647 (1.00) |
0.747 (1.00) |
0.133 (1.00) |
0.106 (1.00) |
0.289 (1.00) |
0.486 (1.00) |
0.707 (1.00) |
0.594 (1.00) |
0.589 (1.00) |
0.334 (1.00) |
0.237 (1.00) |
0.515 (1.00) |
12p loss | 3 (1%) | 511 |
0.344 (1.00) |
0.437 (1.00) |
1 (1.00) |
0.447 (1.00) |
0.448 (1.00) |
|||||||
12q loss | 4 (1%) | 510 |
0.577 (1.00) |
0.525 (1.00) |
0.185 (1.00) |
1 (1.00) |
1 (1.00) |
0.213 (1.00) |
0.756 (1.00) |
|||||
16p loss | 10 (2%) | 504 |
0.275 (1.00) |
0.631 (1.00) |
0.036 (1.00) |
0.837 (1.00) |
0.293 (1.00) |
0.045 (1.00) |
0.269 (1.00) |
0.125 (1.00) |
0.373 (1.00) |
0.546 (1.00) |
||
16q loss | 15 (3%) | 499 |
0.0602 (1.00) |
0.344 (1.00) |
0.0576 (1.00) |
0.595 (1.00) |
0.199 (1.00) |
0.00593 (1.00) |
0.103 (1.00) |
0.0341 (1.00) |
0.71 (1.00) |
0.715 (1.00) |
||
19p loss | 11 (2%) | 503 |
0.000426 (0.29) |
0.0604 (1.00) |
0.00059 (0.396) |
0.000788 (0.519) |
0.165 (1.00) |
0.0176 (1.00) |
0.269 (1.00) |
0.178 (1.00) |
0.115 (1.00) |
0.00827 (1.00) |
||
19q loss | 4 (1%) | 510 |
0.0134 (1.00) |
0.89 (1.00) |
0.168 (1.00) |
0.352 (1.00) |
0.388 (1.00) |
0.83 (1.00) |
1 (1.00) |
|||||
20p loss | 8 (2%) | 506 |
0.223 (1.00) |
1 (1.00) |
0.0582 (1.00) |
1 (1.00) |
0.0907 (1.00) |
0.445 (1.00) |
0.0155 (1.00) |
0.0811 (1.00) |
||||
20q loss | 3 (1%) | 511 |
0.181 (1.00) |
0.0581 (1.00) |
0.763 (1.00) |
0.0556 (1.00) |
0.00883 (1.00) |
P value = 1.3e-07 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
1P GAIN MUTATED | 20 | 2 | 1 |
1P GAIN WILD-TYPE | 142 | 221 | 128 |
P value = 1.74e-15 (Fisher's exact test), Q value = 1.5e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
1Q GAIN MUTATED | 43 | 6 | 2 |
1Q GAIN WILD-TYPE | 119 | 217 | 127 |
P value = 1.85e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
1Q GAIN MUTATED | 15 | 2 | 32 |
1Q GAIN WILD-TYPE | 200 | 106 | 155 |
P value = 2.16e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
1Q GAIN MUTATED | 3 | 14 | 32 |
1Q GAIN WILD-TYPE | 107 | 195 | 145 |
P value = 2.53e-09 (Fisher's exact test), Q value = 2.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
2P GAIN MUTATED | 47 | 13 | 16 |
2P GAIN WILD-TYPE | 115 | 210 | 113 |
P value = 2.14e-07 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
2Q GAIN MUTATED | 45 | 16 | 16 |
2Q GAIN WILD-TYPE | 117 | 207 | 113 |
P value = 6.13e-05 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
3P GAIN MUTATED | 3 | 1 | 16 |
3P GAIN WILD-TYPE | 107 | 208 | 161 |
P value = 2e-04 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
3P GAIN MUTATED | 7 | 4 | 9 |
3P GAIN WILD-TYPE | 36 | 265 | 175 |
P value = 2.99e-11 (Fisher's exact test), Q value = 2.5e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
3Q GAIN MUTATED | 40 | 5 | 15 |
3Q GAIN WILD-TYPE | 122 | 218 | 114 |
P value = 5.97e-07 (Fisher's exact test), Q value = 0.00047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 186 | 152 | 109 |
3Q GAIN MUTATED | 9 | 16 | 29 |
3Q GAIN WILD-TYPE | 177 | 136 | 80 |
P value = 1.3e-05 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
3Q GAIN MUTATED | 11 | 11 | 38 |
3Q GAIN WILD-TYPE | 204 | 97 | 149 |
P value = 1.87e-06 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
3Q GAIN MUTATED | 10 | 41 | 9 |
3Q GAIN WILD-TYPE | 216 | 164 | 70 |
P value = 1.45e-08 (Fisher's exact test), Q value = 1.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
3Q GAIN MUTATED | 8 | 9 | 42 |
3Q GAIN WILD-TYPE | 102 | 200 | 135 |
P value = 4.11e-06 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
3Q GAIN MUTATED | 14 | 17 | 28 |
3Q GAIN WILD-TYPE | 29 | 252 | 156 |
P value = 0.000181 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
3Q GAIN MUTATED | 2 | 7 | 22 |
3Q GAIN WILD-TYPE | 48 | 92 | 65 |
P value = 0.000208 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
4P GAIN MUTATED | 2 | 0 | 11 |
4P GAIN WILD-TYPE | 108 | 209 | 166 |
P value = 6.88e-05 (Chi-square test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
4P GAIN MUTATED | 2 | 1 | 0 | 1 | 0 |
4P GAIN WILD-TYPE | 9 | 53 | 79 | 10 | 81 |
P value = 0.000208 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
4Q GAIN MUTATED | 2 | 0 | 11 |
4Q GAIN WILD-TYPE | 108 | 209 | 166 |
P value = 6.88e-05 (Chi-square test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
4Q GAIN MUTATED | 2 | 1 | 0 | 1 | 0 |
4Q GAIN WILD-TYPE | 9 | 53 | 79 | 10 | 81 |
P value = 0.000101 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
5P GAIN MUTATED | 81 | 64 | 45 |
5P GAIN WILD-TYPE | 81 | 159 | 84 |
P value = 9.53e-14 (Fisher's exact test), Q value = 8.2e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
7P GAIN MUTATED | 84 | 35 | 49 |
7P GAIN WILD-TYPE | 78 | 188 | 80 |
P value = 1.61e-05 (Chi-square test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
7P GAIN MUTATED | 21 | 19 | 34 | 34 | 11 | 30 |
7P GAIN WILD-TYPE | 79 | 69 | 50 | 41 | 32 | 27 |
P value = 0.000127 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
7P GAIN MUTATED | 52 | 32 | 82 |
7P GAIN WILD-TYPE | 163 | 76 | 105 |
P value = 1.24e-13 (Fisher's exact test), Q value = 1.1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
7Q GAIN MUTATED | 83 | 35 | 51 |
7Q GAIN WILD-TYPE | 79 | 188 | 78 |
P value = 2.78e-05 (Chi-square test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
7Q GAIN MUTATED | 21 | 21 | 34 | 34 | 10 | 30 |
7Q GAIN WILD-TYPE | 79 | 67 | 50 | 41 | 33 | 27 |
P value = 0.000144 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
7Q GAIN MUTATED | 52 | 33 | 82 |
7Q GAIN WILD-TYPE | 163 | 75 | 105 |
P value = 6.29e-09 (Fisher's exact test), Q value = 5.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
8P GAIN MUTATED | 22 | 0 | 9 |
8P GAIN WILD-TYPE | 140 | 223 | 120 |
P value = 1.91e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
8P GAIN MUTATED | 3 | 5 | 23 |
8P GAIN WILD-TYPE | 212 | 103 | 164 |
P value = 0.000329 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
8P GAIN MUTATED | 5 | 23 | 3 |
8P GAIN WILD-TYPE | 221 | 182 | 76 |
P value = 6.98e-06 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
8P GAIN MUTATED | 3 | 4 | 24 |
8P GAIN WILD-TYPE | 107 | 205 | 153 |
P value = 9.3e-19 (Fisher's exact test), Q value = 8.2e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
8Q GAIN MUTATED | 45 | 0 | 14 |
8Q GAIN WILD-TYPE | 117 | 223 | 115 |
P value = 6.54e-06 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
8Q GAIN MUTATED | 24 | 3 | 9 |
8Q GAIN WILD-TYPE | 76 | 111 | 67 |
P value = 5.21e-05 (Chi-square test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
8Q GAIN MUTATED | 4 | 9 | 15 | 8 | 1 | 16 |
8Q GAIN WILD-TYPE | 96 | 79 | 69 | 67 | 42 | 41 |
P value = 8.36e-12 (Fisher's exact test), Q value = 7.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
8Q GAIN MUTATED | 6 | 6 | 46 |
8Q GAIN WILD-TYPE | 209 | 102 | 141 |
P value = 1.2e-09 (Fisher's exact test), Q value = 9.9e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
8Q GAIN MUTATED | 9 | 46 | 3 |
8Q GAIN WILD-TYPE | 217 | 159 | 76 |
P value = 6.49e-11 (Fisher's exact test), Q value = 5.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
8Q GAIN MUTATED | 6 | 7 | 44 |
8Q GAIN WILD-TYPE | 104 | 202 | 133 |
P value = 6.51e-07 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
8Q GAIN MUTATED | 1 | 2 | 21 |
8Q GAIN WILD-TYPE | 49 | 97 | 66 |
P value = 0.00018 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
10P GAIN MUTATED | 1 | 15 | 1 |
10P GAIN WILD-TYPE | 225 | 190 | 78 |
P value = 1.42e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
11P GAIN MUTATED | 16 | 2 | 13 |
11P GAIN WILD-TYPE | 146 | 221 | 116 |
P value = 0.000276 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
11Q GAIN MUTATED | 13 | 3 | 13 |
11Q GAIN WILD-TYPE | 149 | 220 | 116 |
P value = 9.53e-14 (Fisher's exact test), Q value = 8.2e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
12P GAIN MUTATED | 67 | 19 | 34 |
12P GAIN WILD-TYPE | 95 | 204 | 95 |
P value = 0.000174 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
12P GAIN MUTATED | 37 | 15 | 22 |
12P GAIN WILD-TYPE | 63 | 99 | 54 |
P value = 1.34e-12 (Chi-square test), Q value = 1.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
12P GAIN MUTATED | 4 | 17 | 31 | 14 | 6 | 31 |
12P GAIN WILD-TYPE | 96 | 71 | 53 | 61 | 37 | 26 |
P value = 1.91e-11 (Fisher's exact test), Q value = 1.6e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
12P GAIN MUTATED | 25 | 18 | 76 |
12P GAIN WILD-TYPE | 190 | 90 | 111 |
P value = 2.37e-12 (Fisher's exact test), Q value = 2e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
12P GAIN MUTATED | 25 | 82 | 12 |
12P GAIN WILD-TYPE | 201 | 123 | 67 |
P value = 1.1e-10 (Fisher's exact test), Q value = 9.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
12P GAIN MUTATED | 19 | 26 | 73 |
12P GAIN WILD-TYPE | 91 | 183 | 104 |
P value = 7.35e-08 (Fisher's exact test), Q value = 5.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
12P GAIN MUTATED | 9 | 7 | 36 |
12P GAIN WILD-TYPE | 41 | 92 | 51 |
P value = 1.74e-13 (Fisher's exact test), Q value = 1.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
12Q GAIN MUTATED | 66 | 19 | 35 |
12Q GAIN WILD-TYPE | 96 | 204 | 94 |
P value = 0.000118 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
12Q GAIN MUTATED | 38 | 15 | 21 |
12Q GAIN WILD-TYPE | 62 | 99 | 55 |
P value = 1.87e-13 (Chi-square test), Q value = 1.6e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
12Q GAIN MUTATED | 4 | 16 | 31 | 14 | 6 | 32 |
12Q GAIN WILD-TYPE | 96 | 72 | 53 | 61 | 37 | 25 |
P value = 6.4e-11 (Fisher's exact test), Q value = 5.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
12Q GAIN MUTATED | 25 | 19 | 75 |
12Q GAIN WILD-TYPE | 190 | 89 | 112 |
P value = 2.37e-12 (Fisher's exact test), Q value = 2e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
12Q GAIN MUTATED | 25 | 82 | 12 |
12Q GAIN WILD-TYPE | 201 | 123 | 67 |
P value = 3.2e-11 (Fisher's exact test), Q value = 2.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
12Q GAIN MUTATED | 18 | 26 | 74 |
12Q GAIN WILD-TYPE | 92 | 183 | 103 |
P value = 7.35e-08 (Fisher's exact test), Q value = 5.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
12Q GAIN MUTATED | 9 | 7 | 36 |
12Q GAIN WILD-TYPE | 41 | 92 | 51 |
P value = 2.84e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
17P GAIN MUTATED | 14 | 1 | 10 |
17P GAIN WILD-TYPE | 148 | 222 | 119 |
P value = 8.05e-05 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
17Q GAIN MUTATED | 18 | 3 | 10 |
17Q GAIN WILD-TYPE | 144 | 220 | 119 |
P value = 1.98e-09 (Fisher's exact test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
19P GAIN MUTATED | 29 | 3 | 19 |
19P GAIN WILD-TYPE | 133 | 220 | 110 |
P value = 0.000192 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
19P GAIN MUTATED | 9 | 10 | 31 |
19P GAIN WILD-TYPE | 101 | 199 | 146 |
P value = 2.36e-11 (Fisher's exact test), Q value = 2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
19Q GAIN MUTATED | 35 | 3 | 19 |
19Q GAIN WILD-TYPE | 127 | 220 | 110 |
P value = 0.000287 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
19Q GAIN MUTATED | 24 | 7 | 6 |
19Q GAIN WILD-TYPE | 76 | 107 | 70 |
P value = 2.97e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
19Q GAIN MUTATED | 9 | 11 | 35 |
19Q GAIN WILD-TYPE | 101 | 198 | 142 |
P value = 7.57e-22 (Fisher's exact test), Q value = 6.7e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
20P GAIN MUTATED | 65 | 7 | 39 |
20P GAIN WILD-TYPE | 97 | 216 | 90 |
P value = 5.62e-05 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
20P GAIN MUTATED | 34 | 11 | 18 |
20P GAIN WILD-TYPE | 66 | 103 | 58 |
P value = 1.07e-07 (Chi-square test), Q value = 8.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
20P GAIN MUTATED | 7 | 21 | 19 | 18 | 5 | 28 |
20P GAIN WILD-TYPE | 93 | 67 | 65 | 57 | 38 | 29 |
P value = 1.15e-12 (Fisher's exact test), Q value = 9.8e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
20P GAIN MUTATED | 19 | 19 | 73 |
20P GAIN WILD-TYPE | 196 | 89 | 114 |
P value = 2.16e-12 (Fisher's exact test), Q value = 1.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
20P GAIN MUTATED | 22 | 78 | 11 |
20P GAIN WILD-TYPE | 204 | 127 | 68 |
P value = 3.32e-10 (Fisher's exact test), Q value = 2.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
20P GAIN MUTATED | 24 | 20 | 66 |
20P GAIN WILD-TYPE | 86 | 189 | 111 |
P value = 0.000241 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
20P GAIN MUTATED | 13 | 41 | 56 |
20P GAIN WILD-TYPE | 30 | 228 | 128 |
P value = 6.18e-07 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
20P GAIN MUTATED | 9 | 6 | 32 |
20P GAIN WILD-TYPE | 41 | 93 | 55 |
P value = 2.82e-23 (Fisher's exact test), Q value = 2.5e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
20Q GAIN MUTATED | 69 | 7 | 38 |
20Q GAIN WILD-TYPE | 93 | 216 | 91 |
P value = 5.62e-05 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
20Q GAIN MUTATED | 34 | 11 | 18 |
20Q GAIN WILD-TYPE | 66 | 103 | 58 |
P value = 6.76e-09 (Chi-square test), Q value = 5.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
20Q GAIN MUTATED | 7 | 20 | 21 | 18 | 5 | 30 |
20Q GAIN WILD-TYPE | 93 | 68 | 63 | 57 | 38 | 27 |
P value = 2.62e-14 (Fisher's exact test), Q value = 2.3e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
20Q GAIN MUTATED | 19 | 18 | 77 |
20Q GAIN WILD-TYPE | 196 | 90 | 110 |
P value = 1.9e-13 (Fisher's exact test), Q value = 1.6e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
20Q GAIN MUTATED | 22 | 81 | 11 |
20Q GAIN WILD-TYPE | 204 | 124 | 68 |
P value = 3.55e-11 (Fisher's exact test), Q value = 3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
20Q GAIN MUTATED | 24 | 20 | 69 |
20Q GAIN WILD-TYPE | 86 | 189 | 108 |
P value = 0.000154 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
20Q GAIN MUTATED | 13 | 42 | 58 |
20Q GAIN WILD-TYPE | 30 | 227 | 126 |
P value = 2.7e-07 (Fisher's exact test), Q value = 0.00021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
20Q GAIN MUTATED | 9 | 6 | 33 |
20Q GAIN WILD-TYPE | 41 | 93 | 54 |
P value = 3.43e-06 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
21Q GAIN MUTATED | 32 | 10 | 8 |
21Q GAIN WILD-TYPE | 130 | 213 | 121 |
P value = 5.78e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
22Q GAIN MUTATED | 21 | 5 | 14 |
22Q GAIN WILD-TYPE | 141 | 218 | 115 |
P value = 1.1e-09 (Fisher's exact test), Q value = 9e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
1P LOSS MUTATED | 26 | 4 | 26 |
1P LOSS WILD-TYPE | 136 | 219 | 103 |
P value = 1.97e-08 (Fisher's exact test), Q value = 1.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
1P LOSS MUTATED | 19 | 21 | 16 |
1P LOSS WILD-TYPE | 24 | 248 | 168 |
P value = 0.000248 (Chi-square test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
1P LOSS MUTATED | 5 | 5 | 11 | 1 | 2 |
1P LOSS WILD-TYPE | 6 | 49 | 68 | 10 | 79 |
P value = 5.03e-10 (Fisher's exact test), Q value = 4.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
1Q LOSS MUTATED | 11 | 1 | 24 |
1Q LOSS WILD-TYPE | 151 | 222 | 105 |
P value = 2.54e-08 (Fisher's exact test), Q value = 2.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
1Q LOSS MUTATED | 15 | 10 | 11 |
1Q LOSS WILD-TYPE | 28 | 259 | 173 |
P value = 1.41e-05 (Chi-square test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
1Q LOSS MUTATED | 5 | 5 | 4 | 1 | 2 |
1Q LOSS WILD-TYPE | 6 | 49 | 75 | 10 | 79 |
P value = 3.58e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
2P LOSS MUTATED | 0 | 1 | 6 |
2P LOSS WILD-TYPE | 33 | 23 | 7 |
P value = 6.3e-05 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 32 | 24 |
2P LOSS MUTATED | 6 | 0 | 1 |
2P LOSS WILD-TYPE | 8 | 32 | 23 |
P value = 1.38e-06 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
2P LOSS MUTATED | 2 | 0 | 12 |
2P LOSS WILD-TYPE | 160 | 223 | 117 |
P value = 4.58e-05 (Chi-square test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
2P LOSS MUTATED | 0 | 0 | 0 | 7 | 0 | 2 |
2P LOSS WILD-TYPE | 100 | 88 | 84 | 68 | 43 | 55 |
P value = 2.35e-06 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 186 | 152 | 109 |
2P LOSS MUTATED | 0 | 0 | 9 |
2P LOSS WILD-TYPE | 186 | 152 | 100 |
P value = 2.39e-07 (Fisher's exact test), Q value = 0.00019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
2P LOSS MUTATED | 0 | 12 | 2 |
2P LOSS WILD-TYPE | 215 | 96 | 185 |
P value = 4.73e-09 (Fisher's exact test), Q value = 3.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
2P LOSS MUTATED | 0 | 2 | 12 |
2P LOSS WILD-TYPE | 226 | 203 | 67 |
P value = 8.4e-05 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
2P LOSS MUTATED | 2 | 0 | 12 |
2P LOSS WILD-TYPE | 108 | 209 | 165 |
P value = 4.5e-12 (Fisher's exact test), Q value = 3.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
2P LOSS MUTATED | 12 | 1 | 1 |
2P LOSS WILD-TYPE | 31 | 268 | 183 |
P value = 1.64e-13 (Chi-square test), Q value = 1.4e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
2P LOSS MUTATED | 4 | 1 | 0 | 0 | 0 |
2P LOSS WILD-TYPE | 7 | 53 | 79 | 11 | 81 |
P value = 0.000249 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
2Q LOSS MUTATED | 0 | 1 | 5 |
2Q LOSS WILD-TYPE | 33 | 23 | 8 |
P value = 1.38e-06 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
2Q LOSS MUTATED | 2 | 0 | 12 |
2Q LOSS WILD-TYPE | 160 | 223 | 117 |
P value = 0.000316 (Chi-square test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
2Q LOSS MUTATED | 0 | 0 | 0 | 6 | 0 | 3 |
2Q LOSS WILD-TYPE | 100 | 88 | 84 | 69 | 43 | 54 |
P value = 2.35e-06 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 186 | 152 | 109 |
2Q LOSS MUTATED | 0 | 0 | 9 |
2Q LOSS WILD-TYPE | 186 | 152 | 100 |
P value = 2.39e-07 (Fisher's exact test), Q value = 0.00019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
2Q LOSS MUTATED | 0 | 12 | 2 |
2Q LOSS WILD-TYPE | 215 | 96 | 185 |
P value = 6.39e-08 (Fisher's exact test), Q value = 5.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
2Q LOSS MUTATED | 0 | 3 | 11 |
2Q LOSS WILD-TYPE | 226 | 202 | 68 |
P value = 2.32e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
2Q LOSS MUTATED | 1 | 0 | 13 |
2Q LOSS WILD-TYPE | 109 | 209 | 164 |
P value = 2.53e-10 (Fisher's exact test), Q value = 2.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
2Q LOSS MUTATED | 11 | 2 | 1 |
2Q LOSS WILD-TYPE | 32 | 267 | 183 |
P value = 1.64e-13 (Chi-square test), Q value = 1.4e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
2Q LOSS MUTATED | 4 | 1 | 0 | 0 | 0 |
2Q LOSS WILD-TYPE | 7 | 53 | 79 | 11 | 81 |
P value = 4.72e-24 (Fisher's exact test), Q value = 4.2e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
3P LOSS MUTATED | 142 | 182 | 46 |
3P LOSS WILD-TYPE | 20 | 41 | 83 |
P value = 1.72e-08 (Fisher's exact test), Q value = 1.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
3P LOSS MUTATED | 177 | 54 | 136 |
3P LOSS WILD-TYPE | 38 | 54 | 51 |
P value = 3.36e-10 (Fisher's exact test), Q value = 2.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
3P LOSS MUTATED | 182 | 153 | 32 |
3P LOSS WILD-TYPE | 44 | 52 | 47 |
P value = 2.81e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
3P LOSS MUTATED | 20 | 212 | 124 |
3P LOSS WILD-TYPE | 23 | 57 | 60 |
P value = 5.27e-06 (Chi-square test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
3P LOSS MUTATED | 1 | 33 | 64 | 9 | 63 |
3P LOSS WILD-TYPE | 10 | 21 | 15 | 2 | 18 |
P value = 3.04e-09 (Fisher's exact test), Q value = 2.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
4P LOSS MUTATED | 43 | 10 | 18 |
4P LOSS WILD-TYPE | 119 | 213 | 111 |
P value = 1.04e-11 (Fisher's exact test), Q value = 8.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
4Q LOSS MUTATED | 43 | 6 | 16 |
4Q LOSS WILD-TYPE | 119 | 217 | 113 |
P value = 9.78e-06 (Fisher's exact test), Q value = 0.0074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
4Q LOSS MUTATED | 23 | 41 | 1 |
4Q LOSS WILD-TYPE | 203 | 164 | 78 |
P value = 8.48e-16 (Fisher's exact test), Q value = 7.4e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
6P LOSS MUTATED | 59 | 10 | 30 |
6P LOSS WILD-TYPE | 103 | 213 | 99 |
P value = 3.74e-06 (Chi-square test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
6P LOSS MUTATED | 17 | 7 | 17 | 18 | 4 | 25 |
6P LOSS WILD-TYPE | 83 | 81 | 67 | 57 | 39 | 32 |
P value = 0.000258 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 186 | 152 | 109 |
6P LOSS MUTATED | 22 | 32 | 34 |
6P LOSS WILD-TYPE | 164 | 120 | 75 |
P value = 3.05e-08 (Fisher's exact test), Q value = 2.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
6P LOSS MUTATED | 20 | 16 | 60 |
6P LOSS WILD-TYPE | 195 | 92 | 127 |
P value = 5.76e-07 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
6P LOSS MUTATED | 22 | 61 | 13 |
6P LOSS WILD-TYPE | 204 | 144 | 66 |
P value = 7.99e-11 (Fisher's exact test), Q value = 6.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
6P LOSS MUTATED | 13 | 19 | 63 |
6P LOSS WILD-TYPE | 97 | 190 | 114 |
P value = 0.000278 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
6P LOSS MUTATED | 16 | 36 | 43 |
6P LOSS WILD-TYPE | 27 | 233 | 141 |
P value = 4.38e-07 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
6P LOSS MUTATED | 6 | 5 | 30 |
6P LOSS WILD-TYPE | 44 | 94 | 57 |
P value = 6.58e-15 (Fisher's exact test), Q value = 5.7e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
6Q LOSS MUTATED | 74 | 22 | 30 |
6Q LOSS WILD-TYPE | 88 | 201 | 99 |
P value = 2.57e-05 (Chi-square test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
6Q LOSS MUTATED | 28 | 8 | 24 | 19 | 6 | 26 |
6Q LOSS WILD-TYPE | 72 | 80 | 60 | 56 | 37 | 31 |
P value = 0.000134 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
6Q LOSS MUTATED | 40 | 18 | 65 |
6Q LOSS WILD-TYPE | 175 | 90 | 122 |
P value = 3.86e-07 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
6Q LOSS MUTATED | 18 | 35 | 69 |
6Q LOSS WILD-TYPE | 92 | 174 | 108 |
P value = 0.000132 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
6Q LOSS MUTATED | 9 | 14 | 35 |
6Q LOSS WILD-TYPE | 41 | 85 | 52 |
P value = 8.21e-05 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
8P LOSS MUTATED | 63 | 43 | 30 |
8P LOSS WILD-TYPE | 99 | 180 | 99 |
P value = 2.06e-47 (Fisher's exact test), Q value = 1.8e-44
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
9P LOSS MUTATED | 109 | 5 | 32 |
9P LOSS WILD-TYPE | 53 | 218 | 97 |
P value = 1.76e-19 (Fisher's exact test), Q value = 1.5e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
9P LOSS MUTATED | 60 | 5 | 24 |
9P LOSS WILD-TYPE | 40 | 109 | 52 |
P value = 4.89e-06 (Chi-square test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
9P LOSS MUTATED | 18 | 24 | 31 | 18 | 10 | 33 |
9P LOSS WILD-TYPE | 82 | 64 | 53 | 57 | 33 | 24 |
P value = 2.12e-22 (Fisher's exact test), Q value = 1.9e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
9P LOSS MUTATED | 26 | 16 | 102 |
9P LOSS WILD-TYPE | 189 | 92 | 85 |
P value = 1.18e-25 (Fisher's exact test), Q value = 1e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
9P LOSS MUTATED | 24 | 111 | 9 |
9P LOSS WILD-TYPE | 202 | 94 | 70 |
P value = 2.97e-15 (Fisher's exact test), Q value = 2.6e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
9P LOSS MUTATED | 27 | 26 | 88 |
9P LOSS WILD-TYPE | 83 | 183 | 89 |
P value = 3.49e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
9P LOSS MUTATED | 15 | 54 | 72 |
9P LOSS WILD-TYPE | 28 | 215 | 112 |
P value = 1.04e-10 (Fisher's exact test), Q value = 8.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
9P LOSS MUTATED | 14 | 8 | 45 |
9P LOSS WILD-TYPE | 36 | 91 | 42 |
P value = 3.06e-46 (Fisher's exact test), Q value = 2.7e-43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
9Q LOSS MUTATED | 109 | 6 | 32 |
9Q LOSS WILD-TYPE | 53 | 217 | 97 |
P value = 1.8e-18 (Fisher's exact test), Q value = 1.6e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
9Q LOSS MUTATED | 58 | 5 | 25 |
9Q LOSS WILD-TYPE | 42 | 109 | 51 |
P value = 1.06e-06 (Chi-square test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
9Q LOSS MUTATED | 17 | 24 | 34 | 18 | 10 | 33 |
9Q LOSS WILD-TYPE | 83 | 64 | 50 | 57 | 33 | 24 |
P value = 6.79e-23 (Fisher's exact test), Q value = 6e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
9Q LOSS MUTATED | 26 | 16 | 103 |
9Q LOSS WILD-TYPE | 189 | 92 | 84 |
P value = 3.26e-25 (Fisher's exact test), Q value = 2.9e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
9Q LOSS MUTATED | 24 | 111 | 10 |
9Q LOSS WILD-TYPE | 202 | 94 | 69 |
P value = 1.29e-16 (Fisher's exact test), Q value = 1.1e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
9Q LOSS MUTATED | 26 | 25 | 90 |
9Q LOSS WILD-TYPE | 84 | 184 | 87 |
P value = 0.000159 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
9Q LOSS MUTATED | 14 | 56 | 71 |
9Q LOSS WILD-TYPE | 29 | 213 | 113 |
P value = 4.55e-10 (Fisher's exact test), Q value = 3.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
9Q LOSS MUTATED | 14 | 9 | 45 |
9Q LOSS WILD-TYPE | 36 | 90 | 42 |
P value = 4.96e-09 (Fisher's exact test), Q value = 4.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
10P LOSS MUTATED | 32 | 7 | 27 |
10P LOSS WILD-TYPE | 130 | 216 | 102 |
P value = 2.12e-08 (Fisher's exact test), Q value = 1.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
10Q LOSS MUTATED | 43 | 14 | 30 |
10Q LOSS WILD-TYPE | 119 | 209 | 99 |
P value = 3.4e-05 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
11P LOSS MUTATED | 12 | 0 | 6 |
11P LOSS WILD-TYPE | 150 | 223 | 123 |
P value = 5.91e-07 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
11Q LOSS MUTATED | 17 | 0 | 6 |
11Q LOSS WILD-TYPE | 145 | 223 | 123 |
P value = 9.33e-11 (Fisher's exact test), Q value = 7.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
13Q LOSS MUTATED | 37 | 6 | 26 |
13Q LOSS WILD-TYPE | 125 | 217 | 103 |
P value = 7.66e-06 (Chi-square test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
13Q LOSS MUTATED | 3 | 10 | 14 | 13 | 3 | 19 |
13Q LOSS WILD-TYPE | 97 | 78 | 70 | 62 | 40 | 38 |
P value = 4.1e-06 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
13Q LOSS MUTATED | 13 | 13 | 43 |
13Q LOSS WILD-TYPE | 202 | 95 | 144 |
P value = 3.54e-07 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
13Q LOSS MUTATED | 12 | 47 | 10 |
13Q LOSS WILD-TYPE | 214 | 158 | 69 |
P value = 3.23e-06 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
13Q LOSS MUTATED | 12 | 13 | 42 |
13Q LOSS WILD-TYPE | 98 | 196 | 135 |
P value = 3.12e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
14Q LOSS MUTATED | 9 | 19 | 2 |
14Q LOSS WILD-TYPE | 24 | 5 | 11 |
P value = 4.31e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 32 | 24 |
14Q LOSS MUTATED | 3 | 8 | 19 |
14Q LOSS WILD-TYPE | 11 | 24 | 5 |
P value = 6.37e-18 (Fisher's exact test), Q value = 5.6e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
14Q LOSS MUTATED | 112 | 55 | 47 |
14Q LOSS WILD-TYPE | 50 | 168 | 82 |
P value = 6.21e-08 (Fisher's exact test), Q value = 5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
14Q LOSS MUTATED | 58 | 24 | 36 |
14Q LOSS WILD-TYPE | 42 | 90 | 40 |
P value = 1.01e-13 (Chi-square test), Q value = 8.7e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
14Q LOSS MUTATED | 27 | 28 | 62 | 23 | 13 | 39 |
14Q LOSS WILD-TYPE | 73 | 60 | 22 | 52 | 30 | 18 |
P value = 1.28e-07 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 186 | 152 | 109 |
14Q LOSS MUTATED | 53 | 89 | 50 |
14Q LOSS WILD-TYPE | 133 | 63 | 59 |
P value = 1.97e-21 (Fisher's exact test), Q value = 1.7e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
14Q LOSS MUTATED | 68 | 16 | 126 |
14Q LOSS WILD-TYPE | 147 | 92 | 61 |
P value = 7.89e-16 (Fisher's exact test), Q value = 6.9e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
14Q LOSS MUTATED | 71 | 127 | 12 |
14Q LOSS WILD-TYPE | 155 | 78 | 67 |
P value = 2.41e-11 (Fisher's exact test), Q value = 2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
14Q LOSS MUTATED | 35 | 62 | 111 |
14Q LOSS WILD-TYPE | 75 | 147 | 66 |
P value = 8.25e-07 (Fisher's exact test), Q value = 0.00064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
14Q LOSS MUTATED | 16 | 29 | 57 |
14Q LOSS WILD-TYPE | 34 | 70 | 30 |
P value = 2.9e-05 (Chi-square test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
14Q LOSS MUTATED | 1 | 22 | 51 | 3 | 25 |
14Q LOSS WILD-TYPE | 10 | 32 | 28 | 8 | 56 |
P value = 2.59e-10 (Fisher's exact test), Q value = 2.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
15Q LOSS MUTATED | 28 | 1 | 6 |
15Q LOSS WILD-TYPE | 134 | 222 | 123 |
P value = 3.2e-06 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
15Q LOSS MUTATED | 6 | 2 | 27 |
15Q LOSS WILD-TYPE | 209 | 106 | 160 |
P value = 8.15e-07 (Fisher's exact test), Q value = 0.00064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
15Q LOSS MUTATED | 5 | 29 | 1 |
15Q LOSS WILD-TYPE | 221 | 176 | 78 |
P value = 0.000135 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
17P LOSS MUTATED | 0 | 5 | 6 |
17P LOSS WILD-TYPE | 33 | 19 | 7 |
P value = 0.000271 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 32 | 24 |
17P LOSS MUTATED | 6 | 0 | 5 |
17P LOSS WILD-TYPE | 8 | 32 | 19 |
P value = 5.35e-09 (Fisher's exact test), Q value = 4.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
17P LOSS MUTATED | 25 | 2 | 18 |
17P LOSS WILD-TYPE | 137 | 221 | 111 |
P value = 1.61e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
17P LOSS MUTATED | 4 | 15 | 26 |
17P LOSS WILD-TYPE | 211 | 93 | 161 |
P value = 1.4e-07 (Fisher's exact test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
17P LOSS MUTATED | 4 | 26 | 15 |
17P LOSS WILD-TYPE | 222 | 179 | 64 |
P value = 9.59e-08 (Fisher's exact test), Q value = 7.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
17P LOSS MUTATED | 9 | 4 | 32 |
17P LOSS WILD-TYPE | 101 | 205 | 145 |
P value = 1.69e-06 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
17P LOSS MUTATED | 14 | 13 | 18 |
17P LOSS WILD-TYPE | 29 | 256 | 166 |
P value = 2.42e-06 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
17Q LOSS MUTATED | 12 | 1 | 15 |
17Q LOSS WILD-TYPE | 150 | 222 | 114 |
P value = 5.87e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
17Q LOSS MUTATED | 3 | 14 | 11 |
17Q LOSS WILD-TYPE | 223 | 191 | 68 |
P value = 1.14e-05 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
17Q LOSS MUTATED | 5 | 2 | 21 |
17Q LOSS WILD-TYPE | 105 | 207 | 156 |
P value = 9.14e-07 (Fisher's exact test), Q value = 0.00071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
17Q LOSS MUTATED | 12 | 8 | 8 |
17Q LOSS WILD-TYPE | 31 | 261 | 176 |
P value = 1.81e-05 (Chi-square test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 11 | 54 | 79 | 11 | 81 |
17Q LOSS MUTATED | 4 | 1 | 2 | 0 | 4 |
17Q LOSS WILD-TYPE | 7 | 53 | 77 | 11 | 77 |
P value = 1.36e-13 (Fisher's exact test), Q value = 1.2e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
18P LOSS MUTATED | 56 | 11 | 24 |
18P LOSS WILD-TYPE | 106 | 212 | 105 |
P value = 2.68e-07 (Fisher's exact test), Q value = 0.00021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
18P LOSS MUTATED | 28 | 5 | 22 |
18P LOSS WILD-TYPE | 72 | 109 | 54 |
P value = 3.07e-08 (Chi-square test), Q value = 2.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
18P LOSS MUTATED | 5 | 14 | 23 | 15 | 2 | 24 |
18P LOSS WILD-TYPE | 95 | 74 | 61 | 60 | 41 | 33 |
P value = 7.08e-19 (Fisher's exact test), Q value = 6.2e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
18P LOSS MUTATED | 10 | 9 | 71 |
18P LOSS WILD-TYPE | 205 | 99 | 116 |
P value = 1.89e-15 (Fisher's exact test), Q value = 1.6e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
18P LOSS MUTATED | 11 | 70 | 9 |
18P LOSS WILD-TYPE | 215 | 135 | 70 |
P value = 3.61e-11 (Fisher's exact test), Q value = 3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
18P LOSS MUTATED | 22 | 12 | 57 |
18P LOSS WILD-TYPE | 88 | 197 | 120 |
P value = 1.7e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
18P LOSS MUTATED | 14 | 30 | 47 |
18P LOSS WILD-TYPE | 29 | 239 | 137 |
P value = 4.42e-07 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
18P LOSS MUTATED | 9 | 4 | 29 |
18P LOSS WILD-TYPE | 41 | 95 | 58 |
P value = 2.29e-13 (Fisher's exact test), Q value = 2e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
18Q LOSS MUTATED | 57 | 12 | 24 |
18Q LOSS WILD-TYPE | 105 | 211 | 105 |
P value = 1.97e-06 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 100 | 114 | 76 |
18Q LOSS MUTATED | 27 | 6 | 22 |
18Q LOSS WILD-TYPE | 73 | 108 | 54 |
P value = 1.99e-07 (Chi-square test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 100 | 88 | 84 | 75 | 43 | 57 |
18Q LOSS MUTATED | 5 | 14 | 23 | 16 | 4 | 24 |
18Q LOSS WILD-TYPE | 95 | 74 | 61 | 59 | 39 | 33 |
P value = 6.42e-18 (Fisher's exact test), Q value = 5.6e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
18Q LOSS MUTATED | 11 | 10 | 71 |
18Q LOSS WILD-TYPE | 204 | 98 | 116 |
P value = 4.1e-15 (Fisher's exact test), Q value = 3.6e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
18Q LOSS MUTATED | 11 | 70 | 11 |
18Q LOSS WILD-TYPE | 215 | 135 | 68 |
P value = 1.11e-10 (Fisher's exact test), Q value = 9.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
18Q LOSS MUTATED | 23 | 13 | 57 |
18Q LOSS WILD-TYPE | 87 | 196 | 120 |
P value = 1.4e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
18Q LOSS MUTATED | 15 | 31 | 47 |
18Q LOSS WILD-TYPE | 28 | 238 | 137 |
P value = 1.68e-07 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 50 | 99 | 87 |
18Q LOSS MUTATED | 8 | 4 | 30 |
18Q LOSS WILD-TYPE | 42 | 95 | 57 |
P value = 9.25e-09 (Fisher's exact test), Q value = 7.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
21Q LOSS MUTATED | 23 | 5 | 27 |
21Q LOSS WILD-TYPE | 139 | 218 | 102 |
P value = 5.85e-09 (Fisher's exact test), Q value = 4.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
22Q LOSS MUTATED | 24 | 1 | 14 |
22Q LOSS WILD-TYPE | 138 | 222 | 115 |
P value = 6.24e-07 (Fisher's exact test), Q value = 0.00049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 215 | 108 | 187 |
22Q LOSS MUTATED | 5 | 4 | 30 |
22Q LOSS WILD-TYPE | 210 | 104 | 157 |
P value = 2.84e-06 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 226 | 205 | 79 |
22Q LOSS MUTATED | 4 | 29 | 6 |
22Q LOSS WILD-TYPE | 222 | 176 | 73 |
P value = 1.18e-05 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 110 | 209 | 177 |
22Q LOSS MUTATED | 3 | 8 | 28 |
22Q LOSS WILD-TYPE | 107 | 201 | 149 |
P value = 1.97e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 223 | 129 |
XQ LOSS MUTATED | 27 | 7 | 12 |
XQ LOSS WILD-TYPE | 135 | 216 | 117 |
P value = 1.43e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 43 | 269 | 184 |
XQ LOSS MUTATED | 14 | 18 | 13 |
XQ LOSS WILD-TYPE | 29 | 251 | 171 |
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Copy number data file = transformed.cor.cli.txt
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Molecular subtypes file = KIRC-TP.transferedmergedcluster.txt
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Number of patients = 514
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Number of significantly arm-level cnvs = 80
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Number of molecular subtypes = 12
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.