Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q
amp_1q24.1	62 (12%)	452	0.25879	1	0.24536	1	6.8739e-14	2.27e-11	0.2409	1	0.25843	1	0.38151	1	4.4696e-05	0.012	0.00027842	0.0677	4.1405e-05	0.0111	0.96427	1	0.019697	1	0.0025971	0.54
amp_1q32.1	62 (12%)	452	0.41028	1	0.41105	1	1.5999e-15	5.41e-13	0.080601	1	0.16614	1	0.085802	1	6.2236e-06	0.00177	6.3835e-05	0.0169	1.6831e-05	0.0047	0.81684	1	0.00634	1	0.014131	1
amp_3q26.32	87 (17%)	427	0.057359	1	0.053939	1	3.455e-13	1.13e-10	8.2999e-05	0.0216	0.0027969	0.579	1.085e-05	0.00305	4.7064e-07	0.000141	7.9668e-09	2.52e-06	3.9773e-09	1.26e-06	0.0053507	1	0.00040606	0.0975	0.098581	1
amp_4q32.1	16 (3%)	498	0.18897	1	0.20731	1	0.27954	1	0.70721	1	0.60922	1	0.28018	1	0.018666	1	0.27058	1	0.00146	0.326	0.0055424	1	0.01401	1	0.0010713	0.242
amp_5q35.1	328 (64%)	186	0.064752	1	0.031399	1	0.0045662	0.881	0.72517	1	0.010197	1	0.0038531	0.767	0.0016917	0.367	0.00014467	0.0366	0.13877	1	0.013518	1	0.92727	1	0.044558	1
amp_7q36.3	173 (34%)	341	0.41594	1	0.57703	1	9.0808e-15	3.06e-12	0.018481	1	0.00015348	0.0387	0.0071773	1	3.6204e-05	0.00981	0.0031442	0.641	0.0086995	1	0.27888	1	0.019122	1	0.0065897	1
amp_8q24.22	79 (15%)	435	0.22618	1	0.32459	1	5.3985e-22	1.89e-19	1.0796e-06	0.000315	1.0103e-06	0.000298	0.0073292	1	4.8297e-14	1.6e-11	1.1649e-12	3.81e-10	8.1503e-10	2.59e-07	0.0003312	0.0798	1.0326e-06	0.000304	0.00095804	0.218
amp_10p14	20 (4%)	494	0.18897	1	0.20731	1	0.00020662	0.051	0.1257	1	0.74816	1	0.18497	1	0.0023383	0.489	0.00020018	0.0496	0.082854	1	0.15218	1	0.61918	1	0.10696	1
amp_xp22.2	31 (6%)	483	1	1	1	1	0.0061728	1	0.24187	1	0.0036232	0.728	0.0080619	1	0.05545	1	0.16699	1	0.067432	1	0.52512	1	0.32571	1	0.33899	1
amp_xp11.4	33 (6%)	481	0.84347	1	0.84165	1	0.003947	0.782	0.10764	1	0.0028295	0.583	0.0019648	0.418	0.029926	1	0.12063	1	0.040771	1	0.48919	1	0.17155	1	0.19334	1
amp_xq11.2	29 (6%)	485	0.17187	1	0.18166	1	0.16515	1	0.3957	1	0.086411	1	0.042933	1	0.18721	1	0.51718	1	0.14208	1	0.40081	1	0.24135	1	0.33673	1
amp_xq28	36 (7%)	478	0.49011	1	0.59084	1	0.12059	1	0.8581	1	0.05227	1	0.050825	1	0.10233	1	0.022466	1	0.099771	1	0.15091	1	0.071216	1	0.14938	1
del_1p36.23	101 (20%)	413	0.00021237	0.052	0.00015817	0.0397	2.8356e-14	9.47e-12	0.029279	1	3.5961e-05	0.00978	9.3211e-05	0.0241	2.5191e-05	0.0069	0.00063179	0.146	1.3763e-06	0.000398	1.4306e-08	4.49e-06	0.0017509	0.378	0.00047636	0.112
del_1p31.1	75 (15%)	439	0.0017522	0.378	0.00063021	0.146	2.7244e-11	8.8e-09	0.060045	1	7.8181e-05	0.0205	0.0065835	1	0.0098202	1	0.001357	0.304	2.235e-05	0.00617	1.0879e-07	3.35e-05	0.036006	1	0.0004623	0.11
del_1q43	40 (8%)	474	0.010729	1	0.013331	1	5.1946e-07	0.000155	0.39023	1	0.0065067	1	0.016466	1	0.0044942	0.872	0.0051737	0.988	0.24604	1	3.1823e-07	9.61e-05	1	1	0.00013112	0.0336
del_2q37.3	50 (10%)	464	0.0015615	0.344	0.0029865	0.612	0.66809	1	0.97203	1	0.15366	1	0.31261	1	8.1149e-05	0.0212	0.00020763	0.0511	0.010054	1	0.00027049	0.066	0.033483	1	0.0037154	0.743
del_3p25.3	452 (88%)	62	1.666e-07	5.1e-05	1.8336e-08	5.74e-06	1.063e-31	3.78e-29	8.7374e-06	0.00247	2.4648e-05	0.00678	0.020513	1	1.9269e-13	6.34e-11	1.0458e-16	3.56e-14	9.7711e-07	0.000289	2.7143e-08	8.44e-06	0.0019626	0.418	1.0087e-14	3.39e-12
del_3p24.3	453 (88%)	61	1.666e-07	5.1e-05	1.8336e-08	5.74e-06	3.2901e-33	1.17e-30	8.7374e-06	0.00247	6.8406e-05	0.0181	0.018172	1	4.7295e-14	1.57e-11	2.6656e-17	9.09e-15	2.5635e-07	7.77e-05	1.2652e-08	3.99e-06	0.0019626	0.418	1.0087e-14	3.39e-12
del_3p12.3	328 (64%)	186	0.0035943	0.726	0.00097812	0.222	4.8196e-36	1.73e-33	0.018938	1	0.48519	1	0.45033	1	1.959e-05	0.00543	1.5108e-07	4.64e-05	0.036713	1	0.01155	1	0.016521	1	0.00011456	0.0294
del_3p11.1	234 (46%)	280	0.17975	1	0.088731	1	1.4298e-24	5.02e-22	0.63147	1	0.92969	1	0.18312	1	0.044771	1	0.0014934	0.33	0.51091	1	0.1918	1	0.024316	1	0.0079652	1
del_3q11.2	158 (31%)	356	0.18819	1	0.11056	1	3.0316e-12	9.85e-10	0.34352	1	0.86056	1	0.13504	1	0.6035	1	0.030782	1	0.47296	1	0.18701	1	0.25447	1	0.084382	1
del_4q34.3	78 (15%)	436	0.23786	1	0.19546	1	6.4431e-11	2.07e-08	0.00014082	0.0358	0.0040029	0.789	0.06223	1	0.00029003	0.0702	2.7345e-06	0.000785	0.3612	1	0.049336	1	0.011943	1	0.02181	1
del_6q26	148 (29%)	366	0.013491	1	0.0061498	1	1.5706e-17	5.4e-15	0.11569	1	2.6121e-05	0.00713	0.0022518	0.473	0.00049917	0.117	0.024641	1	1.2118e-06	0.000353	0.0425	1	0.00013881	0.0354	0.041331	1
del_6q26	148 (29%)	366	0.013491	1	0.0061498	1	1.5706e-17	5.4e-15	0.11569	1	1.2118e-05	0.00339	0.0031938	0.648	0.00018579	0.0463	0.024641	1	3.7939e-07	0.000114	0.093338	1	3.8581e-05	0.0104	0.041331	1
del_8p23.2	153 (30%)	361	0.49699	1	0.58491	1	3.7816e-07	0.000114	0.051319	1	0.0057521	1	0.13083	1	0.0011965	0.269	0.0050147	0.963	0.0019281	0.413	0.0042639	0.831	0.025291	1	0.10029	1
del_9p23	149 (29%)	365	0.004171	0.818	0.00053301	0.125	5.9381e-50	2.14e-47	4.8884e-20	1.7e-17	1.0578e-07	3.27e-05	0.0015911	0.348	7.6726e-25	2.71e-22	3.6654e-26	1.3e-23	6.8446e-18	2.36e-15	5.0226e-05	0.0134	1.7541e-12	5.72e-10	0.00042365	0.101
del_9p21.3	156 (30%)	358	0.0014869	0.33	0.00016886	0.0422	1.0382e-47	3.73e-45	3.3009e-20	1.15e-17	4.203e-08	1.3e-05	0.00042828	0.102	9.9963e-25	3.52e-22	1.2217e-29	4.34e-27	5.964e-18	2.06e-15	1.0719e-06	0.000314	4.9439e-12	1.6e-09	0.00067187	0.154
del_10q23.31	94 (18%)	420	0.43109	1	0.52371	1	5.1693e-10	1.65e-07	0.0016151	0.352	0.98124	1	0.090603	1	0.050601	1	0.079864	1	0.044014	1	0.18964	1	0.093273	1	0.017833	1
del_13q14.2	80 (16%)	434	0.014431	1	0.017434	1	6.5998e-10	2.11e-07	0.00054417	0.126	1.3637e-06	0.000395	0.018668	1	1.6835e-05	0.0047	3.6034e-06	0.00103	4.0248e-06	0.00115	0.00054181	0.126	0.026774	1	0.0070365	1
del_14q31.1	224 (44%)	290	6.0596e-05	0.0161	9.6757e-05	0.025	2.2484e-17	7.69e-15	1.4738e-06	0.000424	6.3002e-14	2.09e-11	2.0859e-07	6.34e-05	4.9016e-21	1.71e-18	2.3451e-16	7.95e-14	6.4976e-11	2.09e-08	0.077665	1	5.99e-07	0.000178	7.2726e-05	0.0191