Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2p23.2	37 (19%)	160	1.1223e-27	2.51e-25	5.6124e-05	0.0103	0.031221	1	0.1037	1	0.051881	1	0.75673	1	0.0073148	1	0.67955	1
amp_2q32.1	45 (23%)	152	4.2089e-24	9.39e-22	0.00034153	0.0594	0.042788	1	0.029491	1	0.1382	1	0.83118	1	0.028619	1	0.41846	1
amp_3q22.3	68 (35%)	129	2.539e-15	5.61e-13	1.0485e-05	0.002	5.2743e-07	0.000107	0.00030348	0.0531	0.053242	1	0.15261	1	0.16319	1	0.0020018	0.324
amp_7q22.1	119 (60%)	78	1.5055e-15	3.34e-13	5.1375e-06	0.001	5.5461e-13	1.2e-10	1.1757e-12	2.54e-10	0.16062	1	0.53389	1	0.097507	1	0.0035245	0.553
amp_17q25.2	143 (73%)	54	1.0191e-09	2.17e-07	0.0038094	0.587	3.4241e-06	0.000678	1.2509e-07	2.59e-05	0.50396	1	1	1	0.60541	1	0.61709	1
amp_19p13.2	21 (11%)	176	3.09e-07	6.33e-05	0.18455	1	0.03578	1	0.068766	1	0.66807	1	0.7979	1	0.53273	1	0.83372	1
del_1p36.31	37 (19%)	160	3.8536e-13	8.4e-11	8.3168e-07	0.000167	4.0339e-07	8.23e-05	0.052989	1	1	1	0.94483	1	0.91812	1	0.10046	1
del_2q37.3	9 (5%)	188	0.10005	1	0.028322	1	0.15106	1	0.012417	1	0.25015	1	1	1	0.064324	1	0.49622	1
del_3p22.1	15 (8%)	182	1.5351e-05	0.00289	1.4351e-07	2.96e-05	1.7335e-05	0.00324	0.00019171	0.0341	0.18572	1	0.0013927	0.23	0.01934	1	7.47e-07	0.000151
del_4q34.3	21 (11%)	176	1.1983e-07	2.49e-05	5.9498e-10	1.27e-07	3.7906e-08	7.96e-06	0.00241	0.386	0.62543	1	0.41053	1	0.73427	1	0.076264	1
del_5p14.2	10 (5%)	187	0.50597	1	3.6403e-06	0.000713	0.14439	1	0.059892	1	0.10784	1	0.33655	1	0.17315	1	0.32659	1
del_5q15	11 (6%)	186	0.34979	1	3.3541e-05	0.00617	0.0049255	0.749	0.00018476	0.0331	0.28695	1	0.073134	1	0.39781	1	0.044107	1
del_5q35.2	11 (6%)	186	0.086232	1	2.0294e-08	4.3e-06	0.00068172	0.115	0.0011579	0.193	0.33729	1	0.073134	1	0.21699	1	0.0046567	0.712
del_6q21	17 (9%)	180	0.0073592	1	0.0069923	1	0.012037	1	0.26528	1	1	1	0.42218	1	0.50291	1	0.098257	1
del_6q22.31	18 (9%)	179	0.01126	1	0.012552	1	0.0058159	0.872	0.18344	1	0.84581	1	0.32056	1	0.37637	1	0.071157	1
del_9p21.3	27 (14%)	170	3.56e-06	0.000701	5.8931e-11	1.27e-08	4.0048e-08	8.37e-06	0.00014802	0.0266	0.039024	1	0.021793	1	0.092311	1	0.0036996	0.573
del_10p11.21	12 (6%)	185	0.00037858	0.0651	7.1202e-06	0.00137	0.00034183	0.0594	0.050925	1	0.56555	1	0.017085	1	0.23471	1	0.0032788	0.518
del_11q22.3	18 (9%)	179	0.00025724	0.0453	9.2101e-05	0.0167	0.0012813	0.213	0.052981	1	0.59422	1	0.088597	1	0.13688	1	0.071157	1
del_11q24.2	19 (10%)	178	0.00084836	0.143	1.1035e-05	0.0021	0.0023881	0.384	0.1339	1	0.8226	1	0.17709	1	0.25527	1	0.052739	1
del_14q11.2	39 (20%)	158	2.9903e-14	6.55e-12	0.0015194	0.249	0.0035878	0.56	0.0054515	0.823	0.66511	1	0.55027	1	0.57152	1	0.3812	1
del_14q32.2	39 (20%)	158	1.776e-14	3.91e-12	0.00043204	0.0734	0.00025587	0.0453	0.0015928	0.26	0.66511	1	0.55027	1	0.57152	1	0.2238	1
del_15q15.2	22 (11%)	175	5.4049e-06	0.00105	1.9385e-05	0.00361	0.00040965	0.07	0.024772	1	0.079403	1	0.15766	1	0.056185	1	0.047934	1
del_16q24.1	7 (4%)	190	0.089893	1	7.9994e-05	0.0146	0.030873	1	0.077769	1	0.7031	1	0.5887	1	1	1	0.094387	1
del_19p13.3	16 (8%)	181	0.019223	1	0.03312	1	0.032073	1	0.036101	1	0.38508	1	0.1822	1	0.11435	1	0.054685	1
del_19q13.42	15 (8%)	182	0.03945	1	0.07673	1	0.01081	1	0.17348	1	0.4995	1	0.83147	1	0.01934	1	0.91411	1
del_21q22.3	33 (17%)	164	3.0222e-05	0.00559	0.16594	1	0.67643	1	1	1	0.51442	1	0.60027	1	0.22	1	0.80838	1
del_xp11.22	18 (9%)	179	2.4171e-06	0.000481	3.0188e-08	6.37e-06	6.4754e-06	0.00125	0.0099658	1	0.17025	1	0.054864	1	0.20304	1	0.011696	1
del_xq28	17 (9%)	180	1.3764e-05	0.0026	1.5424e-06	0.000308	0.0026622	0.423	0.26528	1	0.21735	1	0.41693	1	0.33463	1	0.064975	1