Clinical Features Time to Death AGE GENDER KARNOFSKY.PERFORMANCE.SCORE HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 10 (3%) 349 0.0028678 1 0.027281 1 0.19654 1 0.020492 1 0.0050068 1 0.7139 1 1q gain 15 (4%) 344 0.35242 1 0.00043207 0.191 0.1172 1 0.26287 1 0.26552 1 0.54016 1 2p gain 7 (2%) 352 0.55583 1 0.073243 1 0.70747 1 0.47934 1 0.50429 1 0.68503 1 2q gain 6 (2%) 353 0.90936 1 0.15518 1 0.41955 1 0.47934 1 0.29159 1 0.64037 1 3p gain 10 (3%) 349 0.0013221 0.575 0.10155 1 0.52251 1 0.90339 1 0.031217 1 0.7139 1 3q gain 8 (2%) 351 0.00046317 0.204 0.054263 1 0.47809 1 0.38284 1 0.043646 1 0.41505 1 4p gain 8 (2%) 351 0.28906 1 0.95344 1 0.29652 1 0.70925 1 0.043646 1 0.68503 1 4q gain 3 (1%) 356 0.64764 1 0.61153 1 1 1 NA NA 0.632 1 1 1 5p gain 7 (2%) 352 0.50199 1 0.24856 1 1 1 0.46567 1 0.34457 1 1 1 5q gain 5 (1%) 354 0.8309 1 0.44569 1 0.66452 1 0.15797 1 0.63612 1 0.33826 1 6p gain 6 (2%) 353 0.75516 1 0.16652 1 0.098223 1 0.020496 1 0.29159 1 0.64037 1 7p gain 85 (24%) 274 8.7498e-05 0.0392 3.0363e-06 0.00138 0.26224 1 0.020938 1 0.10737 1 0.39257 1 7q gain 110 (31%) 249 0.00014634 0.0653 5.0148e-07 0.000229 0.35821 1 0.13784 1 0.089748 1 0.69129 1 8p gain 31 (9%) 328 0.54898 1 0.87962 1 0.45376 1 0.19769 1 0.081172 1 1 1 8q gain 38 (11%) 321 0.50868 1 0.32646 1 0.49167 1 0.065765 1 0.0034426 1 0.84313 1 9p gain 14 (4%) 345 0.053681 1 0.029085 1 0.059215 1 0.72664 1 0.33221 1 1 1 9q gain 19 (5%) 340 0.035631 1 0.022706 1 0.01676 1 0.72469 1 0.098574 1 0.42629 1 10p gain 33 (9%) 326 0.66964 1 0.0047855 1 0.067478 1 0.10499 1 0.011135 1 0.00050987 0.224 10q gain 5 (1%) 354 0.71208 1 0.33894 1 0.06483 1 NA NA 0.10263 1 0.099848 1 11p gain 25 (7%) 334 0.55521 1 0.063954 1 0.15208 1 0.56472 1 0.11361 1 1 1 11q gain 41 (11%) 318 0.74457 1 0.066805 1 0.046203 1 0.83931 1 0.54091 1 1 1 12p gain 26 (7%) 333 0.81905 1 0.73413 1 0.15164 1 0.58869 1 0.71356 1 1 1 12q gain 12 (3%) 347 0.0015879 0.684 0.2482 1 0.15511 1 0.51422 1 1 1 0.73749 1 13q gain 3 (1%) 356 0.52911 1 0.81787 1 0.59606 1 0.46754 1 0.27984 1 1 1 14q gain 3 (1%) 356 0.46919 1 0.39066 1 1 1 NA NA 1 1 0.15312 1 15q gain 7 (2%) 352 0.10268 1 0.0058839 1 0.45935 1 0.681 1 0.34457 1 0.68503 1 16p gain 13 (4%) 346 0.31382 1 0.063996 1 0.27167 1 0.85778 1 0.13097 1 0.74332 1 16q gain 13 (4%) 346 0.11278 1 0.3265 1 0.27167 1 0.38929 1 0.035133 1 0.32267 1 17p gain 15 (4%) 344 0.040995 1 0.28355 1 0.42948 1 0.16912 1 0.0625 1 0.76963 1 17q gain 16 (4%) 343 0.0055409 1 0.31826 1 0.30657 1 0.85971 1 0.18134 1 1 1 18p gain 11 (3%) 348 0.063753 1 0.69637 1 1 1 0.61455 1 0.43497 1 1 1 18q gain 8 (2%) 351 0.14178 1 0.71918 1 0.73074 1 0.15797 1 0.60751 1 0.68503 1 19p gain 69 (19%) 290 0.38514 1 0.00588 1 0.50329 1 0.11124 1 6.2082e-05 0.0279 0.8768 1 19q gain 18 (5%) 341 8.4641e-06 0.00383 7.2283e-05 0.0325 0.63135 1 0.49325 1 0.31374 1 0.78107 1 20p gain 34 (9%) 325 7.488e-07 0.000341 2.7832e-06 0.00126 0.4702 1 0.14496 1 0.12549 1 0.67812 1 20q gain 35 (10%) 324 6.8839e-07 0.000314 1.7067e-05 0.0077 0.21111 1 0.21589 1 0.18301 1 0.6802 1 21q gain 20 (6%) 339 0.17469 1 0.016826 1 0.81854 1 0.27559 1 0.4765 1 1 1 22q gain 11 (3%) 348 0.94919 1 0.11459 1 0.76036 1 0.97846 1 0.082183 1 0.73749 1 xq gain 27 (8%) 332 0.90531 1 0.50729 1 0.0091116 1 0.6661 1 0.18742 1 0.64278 1 1p loss 132 (37%) 227 0.0098081 1 0.0019959 0.856 1 1 0.89052 1 7.2727e-30 3.36e-27 0.01585 1 1q loss 19 (5%) 340 0.92011 1 0.038751 1 0.63874 1 0.099994 1 0.23905 1 0.58444 1 2p loss 13 (4%) 346 0.17793 1 0.7576 1 0.1541 1 0.76458 1 0.45834 1 1 1 2q loss 13 (4%) 346 0.84759 1 0.11096 1 0.39641 1 0.72664 1 0.10479 1 1 1 3p loss 15 (4%) 344 0.0089359 1 0.65938 1 0.42948 1 0.022666 1 0.63512 1 0.76963 1 3q loss 20 (6%) 339 0.013875 1 0.87026 1 0.064972 1 0.24089 1 0.87848 1 0.59664 1 4p loss 52 (14%) 307 0.89125 1 0.0014831 0.641 0.17553 1 0.55916 1 0.0016928 0.728 0.48857 1 4q loss 67 (19%) 292 0.88211 1 0.17429 1 0.2219 1 0.63113 1 0.012302 1 0.43793 1 5p loss 27 (8%) 332 0.3882 1 0.088729 1 1 1 0.23764 1 0.022765 1 0.019855 1 5q loss 26 (7%) 333 0.083477 1 0.3407 1 0.42113 1 0.71871 1 0.090141 1 0.055658 1 6p loss 22 (6%) 337 0.00090992 0.397 0.38764 1 0.6651 1 0.34388 1 0.050603 1 1 1 6q loss 41 (11%) 318 0.00084561 0.37 0.058038 1 0.74088 1 0.15003 1 0.00056516 0.248 0.08227 1 7p loss 3 (1%) 356 0.4861 1 0.52777 1 0.59606 1 NA NA 0.632 1 1 1 7q loss 3 (1%) 356 0.65481 1 0.8599 1 1 1 0.8972 1 0.632 1 1 1 8p loss 12 (3%) 347 0.044404 1 0.15073 1 1 1 0.54333 1 0.26186 1 0.50124 1 8q loss 9 (3%) 350 0.012331 1 0.22268 1 0.73764 1 0.4818 1 0.39753 1 1 1 9p loss 78 (22%) 281 9.1277e-05 0.0408 0.14361 1 0.36926 1 0.53057 1 0.043418 1 0.026691 1 9q loss 31 (9%) 328 0.0051535 1 0.23418 1 0.70829 1 0.05454 1 0.79354 1 0.8313 1 10p loss 58 (16%) 301 0 0 7.1938e-13 3.31e-10 0.24999 1 0.0049377 1 0.000346 0.153 0.5081 1 10q loss 68 (19%) 291 1.246e-10 5.71e-08 1.9884e-11 9.13e-09 0.2247 1 0.011806 1 0.00015712 0.0699 0.64124 1 11p loss 45 (13%) 314 0.31335 1 0.21413 1 0.20102 1 0.9954 1 0.057772 1 0.46748 1 11q loss 16 (4%) 343 0.011349 1 0.073037 1 0.80093 1 0.13525 1 0.080268 1 0.37554 1 12p loss 15 (4%) 344 0.79973 1 0.22857 1 0.60447 1 0.94086 1 0.33431 1 0.54016 1 12q loss 31 (9%) 328 0.92126 1 0.36218 1 0.57358 1 0.56393 1 0.067866 1 0.38305 1 13q loss 84 (23%) 275 0.25091 1 0.68524 1 0.1708 1 0.29331 1 0.68743 1 0.021261 1 14q loss 55 (15%) 304 0.00019996 0.0888 0.0007883 0.345 0.66034 1 0.10229 1 0.22136 1 0.40256 1 15q loss 32 (9%) 327 0.2001 1 0.47416 1 0.85393 1 0.71378 1 0.46596 1 1 1 16p loss 9 (3%) 350 0.20963 1 0.0039749 1 0.51533 1 0.077162 1 0.83578 1 1 1 16q loss 16 (4%) 343 0.14781 1 0.0048647 1 0.80093 1 0.89174 1 0.76864 1 0.55699 1 17p loss 12 (3%) 347 0.016265 1 0.03569 1 0.2377 1 0.02502 1 0.53404 1 0.30736 1 17q loss 8 (2%) 351 0.41497 1 0.10969 1 0.47809 1 0.15572 1 0.67402 1 0.68503 1 18p loss 51 (14%) 308 0.70431 1 0.031259 1 0.032961 1 0.66571 1 0.40169 1 0.72629 1 18q loss 47 (13%) 312 0.79734 1 0.078786 1 0.16058 1 0.74008 1 0.31198 1 1 1 19p loss 18 (5%) 341 0.34066 1 0.62009 1 0.81026 1 0.56058 1 0.91093 1 0.16602 1 19q loss 149 (42%) 210 0.13595 1 0.054847 1 1 1 0.81348 1 1.5132e-26 6.98e-24 0.17231 1 20p loss 3 (1%) 356 0.51088 1 0.48561 1 0.59606 1 NA NA 1 1 0.57577 1 21q loss 20 (6%) 339 0.6624 1 0.61031 1 0.24932 1 0.080445 1 0.10082 1 0.79182 1 22q loss 39 (11%) 320 0.0013593 0.59 0.0014172 0.614 0.5004 1 0.0079191 1 0.16843 1 1 1 xq loss 47 (13%) 312 0.045099 1 0.2296 1 0.64101 1 0.48721 1 0.46108 1 0.85825 1