This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 79 arm-level events and 12 molecular subtypes across 463 patients, 145 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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1q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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2p gain cnv correlated to 'MRNASEQ_CNMF'.
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2q gain cnv correlated to 'MRNASEQ_CNMF'.
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3q gain cnv correlated to 'MRNASEQ_CNMF'.
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5p gain cnv correlated to 'MRNASEQ_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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8p gain cnv correlated to 'CN_CNMF'.
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8q gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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10q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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12p gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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18q gain cnv correlated to 'MRNASEQ_CNMF'.
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19p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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xq gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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1p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p loss cnv correlated to 'CN_CNMF'.
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2q loss cnv correlated to 'CN_CNMF'.
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3p loss cnv correlated to 'MRNASEQ_CNMF'.
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3q loss cnv correlated to 'MRNASEQ_CNMF'.
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4p loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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4q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF'.
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5q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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8q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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9p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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12q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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13q loss cnv correlated to 'CN_CNMF'.
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14q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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15q loss cnv correlated to 'MRNASEQ_CNMF'.
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16p loss cnv correlated to 'MRNASEQ_CNMF'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p loss cnv correlated to 'MRNASEQ_CNMF'.
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21q loss cnv correlated to 'CN_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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xq loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Chi-square test | Fisher's exact test | Chi-square test | Fisher's exact test | |
1p loss | 168 (36%) | 295 |
0.0286 (1.00) |
0.000173 (0.123) |
6.36e-47 (5.3e-44) |
4.6e-95 (3.87e-92) |
0.000311 (0.217) |
0.142 (1.00) |
9.13e-52 (7.64e-49) |
9.06e-65 (7.59e-62) |
1.7e-22 (1.39e-19) |
2.08e-06 (0.00157) |
7.07e-27 (5.82e-24) |
0.000124 (0.089) |
10p loss | 76 (16%) | 387 |
0.271 (1.00) |
0.561 (1.00) |
4.58e-40 (3.79e-37) |
2.75e-49 (2.3e-46) |
2.54e-07 (0.000194) |
0.00232 (1.00) |
2.15e-37 (1.78e-34) |
1.09e-08 (8.56e-06) |
1.58e-15 (1.29e-12) |
2.8e-05 (0.0207) |
1.13e-28 (9.29e-26) |
0.00143 (0.956) |
10q loss | 91 (20%) | 372 |
0.271 (1.00) |
0.561 (1.00) |
1.47e-33 (1.22e-30) |
2.75e-40 (2.29e-37) |
1.32e-06 (0.000999) |
0.000874 (0.596) |
2.76e-35 (2.28e-32) |
4.69e-11 (3.74e-08) |
2.76e-16 (2.25e-13) |
4.17e-06 (0.00312) |
1.19e-25 (9.76e-23) |
0.00156 (1.00) |
19q loss | 190 (41%) | 273 |
0.183 (1.00) |
0.159 (1.00) |
1.11e-35 (9.18e-33) |
1.07e-75 (8.96e-73) |
0.0384 (1.00) |
0.118 (1.00) |
6.85e-42 (5.69e-39) |
1.33e-49 (1.11e-46) |
1.83e-16 (1.49e-13) |
7.94e-06 (0.00592) |
3e-20 (2.46e-17) |
0.000259 (0.182) |
7p gain | 117 (25%) | 346 |
0.745 (1.00) |
0.648 (1.00) |
7.33e-48 (6.12e-45) |
5.97e-24 (4.9e-21) |
0.000874 (0.596) |
0.0177 (1.00) |
8.5e-17 (6.95e-14) |
1.32e-06 (0.000999) |
3.53e-08 (2.74e-05) |
0.0017 (1.00) |
6.79e-10 (5.37e-07) |
0.289 (1.00) |
7q gain | 145 (31%) | 318 |
0.764 (1.00) |
0.495 (1.00) |
3.82e-45 (3.18e-42) |
1.92e-19 (1.57e-16) |
0.00531 (1.00) |
0.0386 (1.00) |
6.94e-12 (5.56e-09) |
6.84e-07 (0.00052) |
2.4e-07 (0.000184) |
0.00202 (1.00) |
1.28e-07 (9.85e-05) |
0.579 (1.00) |
19p gain | 89 (19%) | 374 |
0.221 (1.00) |
0.836 (1.00) |
1.46e-09 (1.15e-06) |
4.97e-16 (4.05e-13) |
0.616 (1.00) |
0.406 (1.00) |
3.22e-10 (2.56e-07) |
0.000216 (0.152) |
8.46e-05 (0.0616) |
0.549 (1.00) |
5.8e-07 (0.000443) |
0.521 (1.00) |
19q gain | 24 (5%) | 439 |
6.12e-14 (4.95e-11) |
3.92e-15 (3.18e-12) |
0.0658 (1.00) |
0.187 (1.00) |
7.94e-12 (6.35e-09) |
0.000237 (0.166) |
3.68e-09 (2.9e-06) |
0.00358 (1.00) |
9.72e-11 (7.75e-08) |
0.182 (1.00) |
||
1p gain | 12 (3%) | 451 |
9.4e-05 (0.0683) |
3.28e-05 (0.0242) |
0.0241 (1.00) |
1 (1.00) |
7.74e-09 (6.08e-06) |
0.000827 (0.565) |
3.14e-05 (0.0232) |
0.00144 (0.961) |
0.000137 (0.098) |
0.00641 (1.00) |
||
20p gain | 42 (9%) | 421 |
5.97e-12 (4.79e-09) |
3.45e-13 (2.79e-10) |
0.00101 (0.681) |
0.158 (1.00) |
7.62e-08 (5.91e-05) |
0.0044 (1.00) |
2.61e-06 (0.00197) |
0.0277 (1.00) |
1.74e-10 (1.38e-07) |
0.213 (1.00) |
||
20q gain | 42 (9%) | 421 |
5.97e-12 (4.79e-09) |
5.69e-14 (4.61e-11) |
0.000898 (0.611) |
0.11 (1.00) |
7.14e-10 (5.64e-07) |
0.000673 (0.462) |
6.28e-08 (4.88e-05) |
0.00189 (1.00) |
2.19e-12 (1.77e-09) |
0.0656 (1.00) |
||
8p loss | 17 (4%) | 446 |
0.615 (1.00) |
0.00137 (0.916) |
1.5e-05 (0.0112) |
9.6e-05 (0.0697) |
0.0185 (1.00) |
0.628 (1.00) |
2.08e-07 (0.00016) |
0.00347 (1.00) |
2.93e-05 (0.0217) |
0.128 (1.00) |
2.32e-05 (0.0172) |
0.0463 (1.00) |
8q loss | 11 (2%) | 452 |
0.000142 (0.102) |
1.59e-05 (0.0118) |
0.0806 (1.00) |
0.74 (1.00) |
0.000108 (0.0782) |
0.0214 (1.00) |
0.000285 (0.199) |
0.154 (1.00) |
0.000231 (0.162) |
0.181 (1.00) |
||
22q loss | 50 (11%) | 413 |
0.815 (1.00) |
0.106 (1.00) |
7.69e-12 (6.15e-09) |
1.04e-07 (8e-05) |
7.58e-05 (0.0555) |
0.0405 (1.00) |
2.02e-07 (0.000155) |
0.000187 (0.132) |
0.0723 (1.00) |
0.388 (1.00) |
0.00783 (1.00) |
0.0485 (1.00) |
1q gain | 18 (4%) | 445 |
0.00011 (0.0794) |
0.000131 (0.0939) |
0.436 (1.00) |
0.738 (1.00) |
0.000107 (0.0776) |
0.0513 (1.00) |
0.00894 (1.00) |
0.25 (1.00) |
0.000353 (0.246) |
0.2 (1.00) |
||
10p gain | 47 (10%) | 416 |
1 (1.00) |
0.0879 (1.00) |
1.62e-14 (1.32e-11) |
6.13e-13 (4.94e-10) |
0.0233 (1.00) |
0.546 (1.00) |
2.34e-09 (1.85e-06) |
3.55e-06 (0.00267) |
0.0145 (1.00) |
0.582 (1.00) |
0.0161 (1.00) |
0.789 (1.00) |
11p loss | 56 (12%) | 407 |
1 (1.00) |
0.0138 (1.00) |
5.02e-14 (4.07e-11) |
1.23e-10 (9.77e-08) |
0.0127 (1.00) |
0.59 (1.00) |
5.15e-12 (4.14e-09) |
8.73e-09 (6.84e-06) |
0.00272 (1.00) |
0.0458 (1.00) |
0.00663 (1.00) |
0.00287 (1.00) |
4p loss | 67 (14%) | 396 |
1 (1.00) |
0.607 (1.00) |
0.0164 (1.00) |
4.77e-10 (3.78e-07) |
0.429 (1.00) |
0.0287 (1.00) |
3.54e-08 (2.75e-05) |
5.94e-07 (0.000452) |
0.0046 (1.00) |
0.0655 (1.00) |
0.00188 (1.00) |
0.676 (1.00) |
4q loss | 85 (18%) | 378 |
1 (1.00) |
0.196 (1.00) |
0.00385 (1.00) |
8.29e-09 (6.51e-06) |
0.264 (1.00) |
0.0532 (1.00) |
1.27e-07 (9.84e-05) |
8.23e-05 (0.0601) |
0.000763 (0.523) |
0.0145 (1.00) |
0.000405 (0.28) |
0.409 (1.00) |
5q loss | 29 (6%) | 434 |
0.446 (1.00) |
0.0182 (1.00) |
8.78e-07 (0.000667) |
0.00242 (1.00) |
0.0218 (1.00) |
0.508 (1.00) |
1.67e-07 (0.000129) |
0.00416 (1.00) |
0.062 (1.00) |
0.108 (1.00) |
0.00804 (1.00) |
0.00023 (0.162) |
11q loss | 19 (4%) | 444 |
0.000202 (0.143) |
0.000147 (0.105) |
0.0179 (1.00) |
1 (1.00) |
8.75e-08 (6.77e-05) |
0.00425 (1.00) |
0.00226 (1.00) |
0.0342 (1.00) |
0.00293 (1.00) |
0.00705 (1.00) |
||
14q loss | 70 (15%) | 393 |
0.467 (1.00) |
0.473 (1.00) |
0.000398 (0.276) |
0.000151 (0.108) |
0.0459 (1.00) |
0.148 (1.00) |
5.7e-05 (0.0418) |
0.0115 (1.00) |
0.000628 (0.433) |
0.208 (1.00) |
0.000104 (0.0751) |
0.00529 (1.00) |
10q gain | 7 (2%) | 456 |
0.000234 (0.165) |
0.233 (1.00) |
0.267 (1.00) |
0.465 (1.00) |
0.000291 (0.203) |
0.54 (1.00) |
0.00745 (1.00) |
0.43 (1.00) |
0.108 (1.00) |
0.73 (1.00) |
||
18p gain | 15 (3%) | 448 |
7.9e-05 (0.0577) |
0.0109 (1.00) |
0.0226 (1.00) |
0.205 (1.00) |
1.53e-10 (1.22e-07) |
0.0194 (1.00) |
0.722 (1.00) |
0.118 (1.00) |
0.413 (1.00) |
0.063 (1.00) |
||
xq gain | 35 (8%) | 428 |
1.79e-08 (1.4e-05) |
8.22e-07 (0.000625) |
0.239 (1.00) |
0.72 (1.00) |
0.00987 (1.00) |
0.00115 (0.774) |
0.258 (1.00) |
0.341 (1.00) |
0.143 (1.00) |
0.418 (1.00) |
||
9p loss | 107 (23%) | 356 |
0.384 (1.00) |
0.27 (1.00) |
4.22e-06 (0.00315) |
0.000274 (0.192) |
0.0318 (1.00) |
0.0664 (1.00) |
0.000944 (0.639) |
0.0288 (1.00) |
0.13 (1.00) |
0.849 (1.00) |
0.248 (1.00) |
0.549 (1.00) |
12q loss | 47 (10%) | 416 |
1 (1.00) |
0.0879 (1.00) |
2.11e-08 (1.65e-05) |
2.36e-07 (0.000181) |
0.583 (1.00) |
0.613 (1.00) |
0.0365 (1.00) |
0.000386 (0.269) |
0.019 (1.00) |
0.442 (1.00) |
0.0016 (1.00) |
0.605 (1.00) |
xq loss | 60 (13%) | 403 |
0.839 (1.00) |
0.022 (1.00) |
0.338 (1.00) |
0.000911 (0.618) |
0.0474 (1.00) |
0.00884 (1.00) |
1.05e-05 (0.00779) |
0.000162 (0.115) |
0.00219 (1.00) |
0.931 (1.00) |
0.00499 (1.00) |
0.298 (1.00) |
2p gain | 11 (2%) | 452 |
0.0489 (1.00) |
0.046 (1.00) |
0.311 (1.00) |
0.43 (1.00) |
1.67e-06 (0.00126) |
0.139 (1.00) |
0.0356 (1.00) |
0.154 (1.00) |
0.0695 (1.00) |
0.181 (1.00) |
||
2q gain | 10 (2%) | 453 |
0.0898 (1.00) |
0.0314 (1.00) |
0.311 (1.00) |
0.43 (1.00) |
2.6e-07 (0.000199) |
0.237 (1.00) |
0.0728 (1.00) |
0.21 (1.00) |
0.0909 (1.00) |
0.216 (1.00) |
||
3q gain | 8 (2%) | 455 |
0.215 (1.00) |
0.064 (1.00) |
0.056 (1.00) |
0.74 (1.00) |
0.000151 (0.108) |
0.36 (1.00) |
0.135 (1.00) |
0.479 (1.00) |
0.211 (1.00) |
0.362 (1.00) |
||
5p gain | 9 (2%) | 454 |
0.00275 (1.00) |
0.00473 (1.00) |
0.0217 (1.00) |
1 (1.00) |
5.71e-05 (0.0419) |
0.0652 (1.00) |
0.00617 (1.00) |
0.107 (1.00) |
0.00594 (1.00) |
0.0152 (1.00) |
||
8p gain | 39 (8%) | 424 |
1.15e-05 (0.00857) |
0.014 (1.00) |
0.0667 (1.00) |
0.566 (1.00) |
0.109 (1.00) |
0.102 (1.00) |
0.308 (1.00) |
0.478 (1.00) |
0.296 (1.00) |
0.215 (1.00) |
||
8q gain | 49 (11%) | 414 |
0.0519 (1.00) |
0.303 (1.00) |
2e-06 (0.00151) |
0.000651 (0.448) |
0.0129 (1.00) |
0.618 (1.00) |
0.00143 (0.953) |
0.0213 (1.00) |
0.0166 (1.00) |
0.475 (1.00) |
0.0053 (1.00) |
0.189 (1.00) |
12p gain | 30 (6%) | 433 |
0.754 (1.00) |
0.0879 (1.00) |
0.000206 (0.146) |
0.0764 (1.00) |
0.261 (1.00) |
0.875 (1.00) |
0.143 (1.00) |
0.0621 (1.00) |
0.0297 (1.00) |
0.111 (1.00) |
0.0211 (1.00) |
0.166 (1.00) |
18q gain | 12 (3%) | 451 |
0.00094 (0.637) |
0.00796 (1.00) |
0.0804 (1.00) |
0.142 (1.00) |
3.48e-08 (2.71e-05) |
0.0214 (1.00) |
0.368 (1.00) |
0.0234 (1.00) |
0.195 (1.00) |
0.0217 (1.00) |
||
2p loss | 19 (4%) | 444 |
3.45e-05 (0.0254) |
0.0682 (1.00) |
0.331 (1.00) |
1 (1.00) |
0.11 (1.00) |
0.0233 (1.00) |
0.146 (1.00) |
0.0883 (1.00) |
0.749 (1.00) |
0.00829 (1.00) |
||
2q loss | 18 (4%) | 445 |
5.82e-06 (0.00435) |
0.00896 (1.00) |
0.0692 (1.00) |
0.628 (1.00) |
0.0822 (1.00) |
0.00551 (1.00) |
0.682 (1.00) |
0.434 (1.00) |
0.0438 (1.00) |
0.00458 (1.00) |
||
3p loss | 25 (5%) | 438 |
0.00255 (1.00) |
0.146 (1.00) |
0.00652 (1.00) |
0.483 (1.00) |
8.6e-05 (0.0626) |
0.00567 (1.00) |
0.0233 (1.00) |
0.165 (1.00) |
0.0298 (1.00) |
0.0377 (1.00) |
||
3q loss | 25 (5%) | 438 |
0.175 (1.00) |
0.561 (1.00) |
0.00598 (1.00) |
0.221 (1.00) |
0.258 (1.00) |
0.191 (1.00) |
0.0002 (0.142) |
0.0682 (1.00) |
0.0364 (1.00) |
0.115 (1.00) |
0.151 (1.00) |
0.0377 (1.00) |
5p loss | 32 (7%) | 431 |
0.745 (1.00) |
0.0422 (1.00) |
3.68e-06 (0.00276) |
0.00107 (0.717) |
0.849 (1.00) |
1 (1.00) |
0.206 (1.00) |
0.046 (1.00) |
0.13 (1.00) |
0.562 (1.00) |
0.613 (1.00) |
0.19 (1.00) |
13q loss | 104 (22%) | 359 |
0.18 (1.00) |
0.000618 (0.427) |
3.5e-08 (2.73e-05) |
0.027 (1.00) |
0.0263 (1.00) |
0.49 (1.00) |
0.00468 (1.00) |
0.0117 (1.00) |
0.0226 (1.00) |
0.232 (1.00) |
0.0311 (1.00) |
0.0701 (1.00) |
15q loss | 45 (10%) | 418 |
1 (1.00) |
0.892 (1.00) |
0.0666 (1.00) |
0.000585 (0.405) |
0.277 (1.00) |
0.0476 (1.00) |
0.000104 (0.0755) |
0.00751 (1.00) |
0.0955 (1.00) |
0.518 (1.00) |
0.0867 (1.00) |
0.358 (1.00) |
16p loss | 13 (3%) | 450 |
0.00321 (1.00) |
0.0608 (1.00) |
0.865 (1.00) |
0.447 (1.00) |
4.53e-05 (0.0333) |
1 (1.00) |
0.39 (1.00) |
1 (1.00) |
0.519 (1.00) |
0.187 (1.00) |
||
20p loss | 5 (1%) | 458 |
0.0513 (1.00) |
0.136 (1.00) |
0.792 (1.00) |
1 (1.00) |
1.05e-06 (0.000796) |
0.586 (1.00) |
0.213 (1.00) |
0.225 (1.00) |
0.142 (1.00) |
0.417 (1.00) |
||
21q loss | 33 (7%) | 430 |
0.615 (1.00) |
0.407 (1.00) |
0.000159 (0.114) |
0.00221 (1.00) |
0.461 (1.00) |
0.834 (1.00) |
0.0143 (1.00) |
0.000976 (0.66) |
0.212 (1.00) |
0.013 (1.00) |
0.219 (1.00) |
0.074 (1.00) |
3p gain | 11 (2%) | 452 |
0.351 (1.00) |
0.182 (1.00) |
0.464 (1.00) |
0.447 (1.00) |
0.00772 (1.00) |
0.388 (1.00) |
0.143 (1.00) |
0.481 (1.00) |
0.261 (1.00) |
0.181 (1.00) |
||
4p gain | 12 (3%) | 451 |
0.0068 (1.00) |
0.0361 (1.00) |
0.0327 (1.00) |
0.787 (1.00) |
0.00288 (1.00) |
0.0109 (1.00) |
0.0563 (1.00) |
0.154 (1.00) |
0.24 (1.00) |
0.0702 (1.00) |
||
4q gain | 5 (1%) | 458 |
0.0513 (1.00) |
0.12 (1.00) |
0.113 (1.00) |
0.668 (1.00) |
0.0185 (1.00) |
0.586 (1.00) |
0.177 (1.00) |
0.485 (1.00) |
0.0303 (1.00) |
0.0359 (1.00) |
||
5q gain | 7 (2%) | 456 |
0.00361 (1.00) |
0.00166 (1.00) |
0.0109 (1.00) |
0.242 (1.00) |
0.0115 (1.00) |
0.267 (1.00) |
0.0141 (1.00) |
0.2 (1.00) |
||||
6p gain | 7 (2%) | 456 |
0.00583 (1.00) |
0.0486 (1.00) |
0.0378 (1.00) |
0.465 (1.00) |
0.127 (1.00) |
0.0307 (1.00) |
0.137 (1.00) |
0.02 (1.00) |
0.0231 (1.00) |
0.2 (1.00) |
||
9p gain | 17 (4%) | 446 |
0.00784 (1.00) |
0.145 (1.00) |
0.294 (1.00) |
0.82 (1.00) |
0.0167 (1.00) |
0.354 (1.00) |
0.406 (1.00) |
0.434 (1.00) |
0.126 (1.00) |
0.243 (1.00) |
||
9q gain | 22 (5%) | 441 |
0.00339 (1.00) |
0.219 (1.00) |
0.258 (1.00) |
0.661 (1.00) |
0.00222 (1.00) |
0.367 (1.00) |
0.0436 (1.00) |
0.363 (1.00) |
0.0173 (1.00) |
0.0252 (1.00) |
||
11p gain | 29 (6%) | 434 |
0.11 (1.00) |
0.00121 (0.811) |
0.027 (1.00) |
0.496 (1.00) |
0.00395 (1.00) |
0.0197 (1.00) |
0.369 (1.00) |
0.773 (1.00) |
0.171 (1.00) |
0.63 (1.00) |
||
11q gain | 50 (11%) | 413 |
0.615 (1.00) |
0.117 (1.00) |
0.229 (1.00) |
0.0185 (1.00) |
0.0837 (1.00) |
0.141 (1.00) |
0.0614 (1.00) |
0.0726 (1.00) |
0.539 (1.00) |
0.781 (1.00) |
0.32 (1.00) |
0.782 (1.00) |
12q gain | 15 (3%) | 448 |
0.00771 (1.00) |
0.0386 (1.00) |
0.173 (1.00) |
1 (1.00) |
0.0309 (1.00) |
0.132 (1.00) |
0.0431 (1.00) |
0.029 (1.00) |
0.00385 (1.00) |
0.0284 (1.00) |
||
13q gain | 5 (1%) | 458 |
0.0513 (1.00) |
0.136 (1.00) |
0.792 (1.00) |
1 (1.00) |
0.626 (1.00) |
0.719 (1.00) |
0.761 (1.00) |
1 (1.00) |
0.837 (1.00) |
1 (1.00) |
||
14q gain | 3 (1%) | 460 |
1 (1.00) |
1 (1.00) |
0.902 (1.00) |
0.416 (1.00) |
0.372 (1.00) |
1 (1.00) |
0.281 (1.00) |
0.608 (1.00) |
||||
15q gain | 10 (2%) | 453 |
0.0457 (1.00) |
0.0294 (1.00) |
0.114 (1.00) |
0.465 (1.00) |
0.00483 (1.00) |
0.125 (1.00) |
0.0244 (1.00) |
0.556 (1.00) |
0.102 (1.00) |
0.154 (1.00) |
||
16p gain | 15 (3%) | 448 |
0.221 (1.00) |
0.485 (1.00) |
0.561 (1.00) |
0.658 (1.00) |
0.0929 (1.00) |
0.138 (1.00) |
0.236 (1.00) |
0.211 (1.00) |
0.0136 (1.00) |
0.00234 (1.00) |
||
16q gain | 16 (3%) | 447 |
0.0339 (1.00) |
0.229 (1.00) |
0.469 (1.00) |
0.738 (1.00) |
0.00101 (0.681) |
0.162 (1.00) |
0.679 (1.00) |
0.293 (1.00) |
0.295 (1.00) |
0.00439 (1.00) |
||
17p gain | 17 (4%) | 446 |
0.581 (1.00) |
0.505 (1.00) |
0.346 (1.00) |
0.771 (1.00) |
0.000786 (0.538) |
0.28 (1.00) |
0.00139 (0.929) |
0.209 (1.00) |
0.00362 (1.00) |
0.0512 (1.00) |
||
17q gain | 19 (4%) | 444 |
0.5 (1.00) |
0.339 (1.00) |
0.346 (1.00) |
0.771 (1.00) |
0.00238 (1.00) |
0.166 (1.00) |
0.00263 (1.00) |
0.0859 (1.00) |
0.0675 (1.00) |
0.0356 (1.00) |
||
21q gain | 23 (5%) | 440 |
0.0202 (1.00) |
0.002 (1.00) |
0.11 (1.00) |
0.531 (1.00) |
0.0514 (1.00) |
0.924 (1.00) |
0.252 (1.00) |
0.868 (1.00) |
0.318 (1.00) |
0.727 (1.00) |
||
22q gain | 17 (4%) | 446 |
0.109 (1.00) |
0.00082 (0.561) |
1 (1.00) |
0.56 (1.00) |
0.0038 (1.00) |
0.00796 (1.00) |
0.519 (1.00) |
0.48 (1.00) |
0.296 (1.00) |
0.375 (1.00) |
||
1q loss | 23 (5%) | 440 |
0.344 (1.00) |
0.144 (1.00) |
0.811 (1.00) |
0.127 (1.00) |
0.552 (1.00) |
0.54 (1.00) |
0.341 (1.00) |
0.304 (1.00) |
0.849 (1.00) |
0.667 (1.00) |
0.336 (1.00) |
0.239 (1.00) |
6p loss | 28 (6%) | 435 |
0.0377 (1.00) |
0.178 (1.00) |
0.186 (1.00) |
0.708 (1.00) |
0.342 (1.00) |
0.546 (1.00) |
0.869 (1.00) |
0.541 (1.00) |
0.728 (1.00) |
0.453 (1.00) |
||
6q loss | 57 (12%) | 406 |
0.000628 (0.433) |
0.00697 (1.00) |
0.254 (1.00) |
0.398 (1.00) |
0.153 (1.00) |
0.0593 (1.00) |
0.254 (1.00) |
0.207 (1.00) |
0.0989 (1.00) |
0.191 (1.00) |
||
7p loss | 3 (1%) | 460 |
0.456 (1.00) |
0.332 (1.00) |
0.937 (1.00) |
1 (1.00) |
0.887 (1.00) |
1 (1.00) |
0.943 (1.00) |
1 (1.00) |
||||
7q loss | 3 (1%) | 460 |
0.0398 (1.00) |
0.332 (1.00) |
0.937 (1.00) |
1 (1.00) |
0.564 (1.00) |
1 (1.00) |
0.351 (1.00) |
1 (1.00) |
||||
9q loss | 46 (10%) | 417 |
0.393 (1.00) |
0.422 (1.00) |
0.607 (1.00) |
0.506 (1.00) |
0.0258 (1.00) |
0.479 (1.00) |
0.807 (1.00) |
0.695 (1.00) |
0.506 (1.00) |
0.586 (1.00) |
||
12p loss | 25 (5%) | 438 |
0.0313 (1.00) |
0.00696 (1.00) |
0.603 (1.00) |
0.51 (1.00) |
0.673 (1.00) |
0.0795 (1.00) |
0.0757 (1.00) |
0.35 (1.00) |
0.107 (1.00) |
0.679 (1.00) |
||
16q loss | 20 (4%) | 443 |
0.00377 (1.00) |
0.00249 (1.00) |
0.374 (1.00) |
0.219 (1.00) |
0.0282 (1.00) |
0.396 (1.00) |
0.472 (1.00) |
0.453 (1.00) |
0.556 (1.00) |
0.479 (1.00) |
||
17p loss | 14 (3%) | 449 |
0.00468 (1.00) |
0.0945 (1.00) |
1 (1.00) |
0.605 (1.00) |
0.0409 (1.00) |
0.0941 (1.00) |
0.0378 (1.00) |
0.0142 (1.00) |
0.00856 (1.00) |
0.0159 (1.00) |
||
17q loss | 9 (2%) | 454 |
0.058 (1.00) |
0.138 (1.00) |
0.835 (1.00) |
0.447 (1.00) |
0.407 (1.00) |
0.227 (1.00) |
0.0579 (1.00) |
0.175 (1.00) |
0.0959 (1.00) |
0.271 (1.00) |
||
18p loss | 63 (14%) | 400 |
0.321 (1.00) |
0.316 (1.00) |
0.44 (1.00) |
0.0352 (1.00) |
0.573 (1.00) |
0.0801 (1.00) |
0.561 (1.00) |
0.719 (1.00) |
0.036 (1.00) |
0.222 (1.00) |
0.56 (1.00) |
0.519 (1.00) |
18q loss | 58 (13%) | 405 |
0.344 (1.00) |
0.212 (1.00) |
0.144 (1.00) |
0.00183 (1.00) |
0.285 (1.00) |
0.202 (1.00) |
0.102 (1.00) |
0.181 (1.00) |
0.559 (1.00) |
0.353 (1.00) |
0.372 (1.00) |
0.615 (1.00) |
19p loss | 21 (5%) | 442 |
0.847 (1.00) |
0.311 (1.00) |
0.366 (1.00) |
0.757 (1.00) |
0.103 (1.00) |
0.661 (1.00) |
0.00829 (1.00) |
0.113 (1.00) |
0.472 (1.00) |
0.453 (1.00) |
0.76 (1.00) |
0.335 (1.00) |
20q loss | 3 (1%) | 460 |
0.155 (1.00) |
0.494 (1.00) |
0.00195 (1.00) |
0.293 (1.00) |
0.279 (1.00) |
0.107 (1.00) |
0.111 (1.00) |
0.0173 (1.00) |
P value = 9.4e-05 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
1P GAIN MUTATED | 4 | 8 | 0 |
1P GAIN WILD-TYPE | 135 | 102 | 214 |
P value = 3.28e-05 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
1P GAIN MUTATED | 4 | 8 | 0 | 0 |
1P GAIN WILD-TYPE | 195 | 57 | 53 | 141 |
P value = 7.74e-09 (Chi-square test), Q value = 6.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
1P GAIN MUTATED | 0 | 10 | 0 | 0 | 2 | 0 |
1P GAIN WILD-TYPE | 116 | 79 | 94 | 126 | 9 | 25 |
P value = 3.14e-05 (Chi-square test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
1P GAIN MUTATED | 0 | 8 | 3 | 0 | 1 | 0 | 0 |
1P GAIN WILD-TYPE | 62 | 68 | 27 | 41 | 135 | 63 | 27 |
P value = 0.000137 (Chi-square test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
1P GAIN MUTATED | 2 | 8 | 0 | 0 | 0 | 2 | 0 |
1P GAIN WILD-TYPE | 85 | 69 | 55 | 124 | 39 | 20 | 31 |
P value = 0.00011 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
1Q GAIN MUTATED | 4 | 12 | 2 |
1Q GAIN WILD-TYPE | 135 | 98 | 212 |
P value = 0.000131 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
1Q GAIN MUTATED | 6 | 10 | 1 | 1 |
1Q GAIN WILD-TYPE | 193 | 55 | 52 | 140 |
P value = 0.000107 (Chi-square test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
1Q GAIN MUTATED | 1 | 10 | 0 | 4 | 2 | 1 |
1Q GAIN WILD-TYPE | 115 | 79 | 94 | 122 | 9 | 24 |
P value = 0.000353 (Chi-square test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
1Q GAIN MUTATED | 2 | 8 | 0 | 4 | 0 | 4 | 0 |
1Q GAIN WILD-TYPE | 85 | 69 | 55 | 120 | 39 | 18 | 31 |
P value = 1.67e-06 (Chi-square test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
2P GAIN MUTATED | 0 | 4 | 2 | 2 | 3 | 0 |
2P GAIN WILD-TYPE | 116 | 85 | 92 | 124 | 8 | 25 |
P value = 2.6e-07 (Chi-square test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
2Q GAIN MUTATED | 0 | 4 | 1 | 2 | 3 | 0 |
2Q GAIN WILD-TYPE | 116 | 85 | 93 | 124 | 8 | 25 |
P value = 0.000151 (Chi-square test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
3Q GAIN MUTATED | 0 | 4 | 1 | 1 | 2 | 0 |
3Q GAIN WILD-TYPE | 116 | 85 | 93 | 125 | 9 | 25 |
P value = 5.71e-05 (Chi-square test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
5P GAIN MUTATED | 0 | 5 | 0 | 1 | 2 | 1 |
5P GAIN WILD-TYPE | 116 | 84 | 94 | 125 | 9 | 24 |
P value = 7.33e-48 (Fisher's exact test), Q value = 6.1e-45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
7P GAIN MUTATED | 21 | 87 | 9 |
7P GAIN WILD-TYPE | 118 | 23 | 205 |
P value = 5.97e-24 (Fisher's exact test), Q value = 4.9e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
7P GAIN MUTATED | 38 | 52 | 11 | 14 |
7P GAIN WILD-TYPE | 161 | 13 | 42 | 127 |
P value = 8.5e-17 (Chi-square test), Q value = 6.9e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
7P GAIN MUTATED | 19 | 54 | 8 | 26 | 5 | 3 |
7P GAIN WILD-TYPE | 97 | 35 | 86 | 100 | 6 | 22 |
P value = 1.32e-06 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
7P GAIN MUTATED | 78 | 7 | 30 |
7P GAIN WILD-TYPE | 146 | 73 | 127 |
P value = 3.53e-08 (Chi-square test), Q value = 2.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
7P GAIN MUTATED | 13 | 41 | 9 | 4 | 25 | 15 | 3 |
7P GAIN WILD-TYPE | 49 | 35 | 21 | 37 | 111 | 48 | 24 |
P value = 6.79e-10 (Chi-square test), Q value = 5.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
7P GAIN MUTATED | 17 | 44 | 6 | 22 | 8 | 7 | 6 |
7P GAIN WILD-TYPE | 70 | 33 | 49 | 102 | 31 | 15 | 25 |
P value = 3.82e-45 (Fisher's exact test), Q value = 3.2e-42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
7Q GAIN MUTATED | 35 | 93 | 17 |
7Q GAIN WILD-TYPE | 104 | 17 | 197 |
P value = 1.92e-19 (Fisher's exact test), Q value = 1.6e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
7Q GAIN MUTATED | 55 | 53 | 13 | 22 |
7Q GAIN WILD-TYPE | 144 | 12 | 40 | 119 |
P value = 6.94e-12 (Chi-square test), Q value = 5.6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
7Q GAIN MUTATED | 33 | 56 | 11 | 33 | 4 | 6 |
7Q GAIN WILD-TYPE | 83 | 33 | 83 | 93 | 7 | 19 |
P value = 6.84e-07 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
7Q GAIN MUTATED | 92 | 9 | 42 |
7Q GAIN WILD-TYPE | 132 | 71 | 115 |
P value = 2.4e-07 (Chi-square test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
7Q GAIN MUTATED | 18 | 44 | 10 | 4 | 33 | 23 | 4 |
7Q GAIN WILD-TYPE | 44 | 32 | 20 | 37 | 103 | 40 | 23 |
P value = 1.28e-07 (Chi-square test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
7Q GAIN MUTATED | 23 | 46 | 7 | 31 | 14 | 8 | 7 |
7Q GAIN WILD-TYPE | 64 | 31 | 48 | 93 | 25 | 14 | 24 |
P value = 1.15e-05 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
8P GAIN MUTATED | 24 | 9 | 6 |
8P GAIN WILD-TYPE | 115 | 101 | 208 |
P value = 2e-06 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
8Q GAIN MUTATED | 29 | 12 | 8 |
8Q GAIN WILD-TYPE | 110 | 98 | 206 |
P value = 1.62e-14 (Fisher's exact test), Q value = 1.3e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
10P GAIN MUTATED | 39 | 2 | 6 |
10P GAIN WILD-TYPE | 100 | 108 | 208 |
P value = 6.13e-13 (Fisher's exact test), Q value = 4.9e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
10P GAIN MUTATED | 44 | 1 | 2 | 0 |
10P GAIN WILD-TYPE | 155 | 64 | 51 | 141 |
P value = 2.34e-09 (Chi-square test), Q value = 1.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
10P GAIN MUTATED | 23 | 5 | 0 | 10 | 6 | 3 |
10P GAIN WILD-TYPE | 93 | 84 | 94 | 116 | 5 | 22 |
P value = 3.55e-06 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
10P GAIN MUTATED | 37 | 0 | 10 |
10P GAIN WILD-TYPE | 187 | 80 | 147 |
P value = 0.000234 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
10Q GAIN MUTATED | 7 | 0 | 0 |
10Q GAIN WILD-TYPE | 132 | 110 | 214 |
P value = 0.000291 (Chi-square test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
10Q GAIN MUTATED | 1 | 1 | 0 | 2 | 2 | 1 |
10Q GAIN WILD-TYPE | 115 | 88 | 94 | 124 | 9 | 24 |
P value = 0.000206 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
12P GAIN MUTATED | 17 | 9 | 4 |
12P GAIN WILD-TYPE | 122 | 101 | 210 |
P value = 7.9e-05 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
18P GAIN MUTATED | 10 | 5 | 0 |
18P GAIN WILD-TYPE | 129 | 105 | 214 |
P value = 1.53e-10 (Chi-square test), Q value = 1.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
18P GAIN MUTATED | 1 | 4 | 0 | 2 | 4 | 3 |
18P GAIN WILD-TYPE | 115 | 85 | 94 | 124 | 7 | 22 |
P value = 3.48e-08 (Chi-square test), Q value = 2.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
18Q GAIN MUTATED | 0 | 5 | 0 | 1 | 3 | 2 |
18Q GAIN WILD-TYPE | 116 | 84 | 94 | 125 | 8 | 23 |
P value = 1.46e-09 (Fisher's exact test), Q value = 1.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
19P GAIN MUTATED | 5 | 34 | 50 |
19P GAIN WILD-TYPE | 134 | 76 | 164 |
P value = 4.97e-16 (Fisher's exact test), Q value = 4e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
19P GAIN MUTATED | 9 | 25 | 4 | 49 |
19P GAIN WILD-TYPE | 190 | 40 | 49 | 92 |
P value = 3.22e-10 (Chi-square test), Q value = 2.6e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
19P GAIN MUTATED | 4 | 26 | 36 | 22 | 1 | 0 |
19P GAIN WILD-TYPE | 112 | 63 | 58 | 104 | 10 | 25 |
P value = 0.000216 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
19P GAIN MUTATED | 32 | 29 | 28 |
19P GAIN WILD-TYPE | 192 | 51 | 129 |
P value = 8.46e-05 (Chi-square test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
19P GAIN MUTATED | 4 | 20 | 4 | 18 | 25 | 11 | 2 |
19P GAIN WILD-TYPE | 58 | 56 | 26 | 23 | 111 | 52 | 25 |
P value = 5.8e-07 (Chi-square test), Q value = 0.00044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
19P GAIN MUTATED | 4 | 23 | 23 | 22 | 7 | 3 | 2 |
19P GAIN WILD-TYPE | 83 | 54 | 32 | 102 | 32 | 19 | 29 |
P value = 6.12e-14 (Fisher's exact test), Q value = 4.9e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
19Q GAIN MUTATED | 0 | 23 | 1 |
19Q GAIN WILD-TYPE | 139 | 87 | 213 |
P value = 3.92e-15 (Fisher's exact test), Q value = 3.2e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
19Q GAIN MUTATED | 1 | 20 | 2 | 0 |
19Q GAIN WILD-TYPE | 198 | 45 | 51 | 141 |
P value = 7.94e-12 (Chi-square test), Q value = 6.3e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
19Q GAIN MUTATED | 0 | 19 | 0 | 5 | 0 | 0 |
19Q GAIN WILD-TYPE | 116 | 70 | 94 | 121 | 11 | 25 |
P value = 0.000237 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
19Q GAIN MUTATED | 21 | 0 | 3 |
19Q GAIN WILD-TYPE | 203 | 80 | 154 |
P value = 3.68e-09 (Chi-square test), Q value = 2.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
19Q GAIN MUTATED | 0 | 16 | 0 | 0 | 4 | 1 | 1 |
19Q GAIN WILD-TYPE | 62 | 60 | 30 | 41 | 132 | 62 | 26 |
P value = 9.72e-11 (Chi-square test), Q value = 7.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
19Q GAIN MUTATED | 0 | 17 | 0 | 4 | 0 | 0 | 1 |
19Q GAIN WILD-TYPE | 87 | 60 | 55 | 120 | 39 | 22 | 30 |
P value = 5.97e-12 (Fisher's exact test), Q value = 4.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
20P GAIN MUTATED | 8 | 30 | 4 |
20P GAIN WILD-TYPE | 131 | 80 | 210 |
P value = 3.45e-13 (Fisher's exact test), Q value = 2.8e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
20P GAIN MUTATED | 7 | 26 | 4 | 5 |
20P GAIN WILD-TYPE | 192 | 39 | 49 | 136 |
P value = 7.62e-08 (Chi-square test), Q value = 5.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
20P GAIN MUTATED | 4 | 23 | 4 | 9 | 2 | 0 |
20P GAIN WILD-TYPE | 112 | 66 | 90 | 117 | 9 | 25 |
P value = 2.61e-06 (Chi-square test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
20P GAIN MUTATED | 0 | 18 | 4 | 2 | 6 | 9 | 0 |
20P GAIN WILD-TYPE | 62 | 58 | 26 | 39 | 130 | 54 | 27 |
P value = 1.74e-10 (Chi-square test), Q value = 1.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
20P GAIN MUTATED | 0 | 23 | 2 | 7 | 4 | 3 | 0 |
20P GAIN WILD-TYPE | 87 | 54 | 53 | 117 | 35 | 19 | 31 |
P value = 5.97e-12 (Fisher's exact test), Q value = 4.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
20Q GAIN MUTATED | 8 | 30 | 4 |
20Q GAIN WILD-TYPE | 131 | 80 | 210 |
P value = 5.69e-14 (Fisher's exact test), Q value = 4.6e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
20Q GAIN MUTATED | 8 | 27 | 2 | 5 |
20Q GAIN WILD-TYPE | 191 | 38 | 51 | 136 |
P value = 7.14e-10 (Chi-square test), Q value = 5.6e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
20Q GAIN MUTATED | 4 | 25 | 4 | 7 | 2 | 0 |
20Q GAIN WILD-TYPE | 112 | 64 | 90 | 119 | 9 | 25 |
P value = 6.28e-08 (Chi-square test), Q value = 4.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
20Q GAIN MUTATED | 1 | 20 | 3 | 2 | 4 | 10 | 0 |
20Q GAIN WILD-TYPE | 61 | 56 | 27 | 39 | 132 | 53 | 27 |
P value = 2.19e-12 (Chi-square test), Q value = 1.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
20Q GAIN MUTATED | 1 | 25 | 2 | 5 | 5 | 2 | 0 |
20Q GAIN WILD-TYPE | 86 | 52 | 53 | 119 | 34 | 20 | 31 |
P value = 1.79e-08 (Fisher's exact test), Q value = 1.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
XQ GAIN MUTATED | 26 | 6 | 3 |
XQ GAIN WILD-TYPE | 113 | 104 | 211 |
P value = 8.22e-07 (Fisher's exact test), Q value = 0.00062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
XQ GAIN MUTATED | 29 | 3 | 3 | 0 |
XQ GAIN WILD-TYPE | 170 | 62 | 50 | 141 |
P value = 0.000173 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 7 | 6 | 10 | 4 |
1P LOSS MUTATED | 7 | 2 | 1 | 0 |
1P LOSS WILD-TYPE | 0 | 4 | 9 | 4 |
P value = 6.36e-47 (Fisher's exact test), Q value = 5.3e-44
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
1P LOSS MUTATED | 6 | 13 | 149 |
1P LOSS WILD-TYPE | 133 | 97 | 65 |
P value = 4.6e-95 (Fisher's exact test), Q value = 3.9e-92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
1P LOSS MUTATED | 5 | 4 | 16 | 140 |
1P LOSS WILD-TYPE | 194 | 61 | 37 | 1 |
P value = 0.000311 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
1P LOSS MUTATED | 8 | 15 | 26 | 36 |
1P LOSS WILD-TYPE | 44 | 47 | 42 | 38 |
P value = 9.13e-52 (Chi-square test), Q value = 7.6e-49
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
1P LOSS MUTATED | 3 | 7 | 92 | 56 | 1 | 9 |
1P LOSS WILD-TYPE | 113 | 82 | 2 | 70 | 10 | 16 |
P value = 9.06e-65 (Fisher's exact test), Q value = 7.6e-62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
1P LOSS MUTATED | 11 | 80 | 77 |
1P LOSS WILD-TYPE | 213 | 0 | 80 |
P value = 1.7e-22 (Chi-square test), Q value = 1.4e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
1P LOSS MUTATED | 4 | 12 | 2 | 37 | 65 | 21 | 16 |
1P LOSS WILD-TYPE | 58 | 64 | 28 | 4 | 71 | 42 | 11 |
P value = 2.08e-06 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 16 | 225 |
1P LOSS MUTATED | 95 | 5 | 57 |
1P LOSS WILD-TYPE | 99 | 11 | 168 |
P value = 7.07e-27 (Chi-square test), Q value = 5.8e-24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
1P LOSS MUTATED | 4 | 14 | 49 | 61 | 13 | 1 | 15 |
1P LOSS WILD-TYPE | 83 | 63 | 6 | 63 | 26 | 21 | 16 |
P value = 0.000124 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 5 | 196 | 234 |
1P LOSS MUTATED | 1 | 91 | 65 |
1P LOSS WILD-TYPE | 4 | 105 | 169 |
P value = 3.45e-05 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
2P LOSS MUTATED | 15 | 1 | 3 |
2P LOSS WILD-TYPE | 124 | 109 | 211 |
P value = 5.82e-06 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
2Q LOSS MUTATED | 15 | 0 | 3 |
2Q LOSS WILD-TYPE | 124 | 110 | 211 |
P value = 8.6e-05 (Chi-square test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
3P LOSS MUTATED | 6 | 8 | 2 | 4 | 4 | 1 |
3P LOSS WILD-TYPE | 110 | 81 | 92 | 122 | 7 | 24 |
P value = 2e-04 (Chi-square test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
3Q LOSS MUTATED | 6 | 7 | 2 | 5 | 4 | 1 |
3Q LOSS WILD-TYPE | 110 | 82 | 92 | 121 | 7 | 24 |
P value = 4.77e-10 (Fisher's exact test), Q value = 3.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
4P LOSS MUTATED | 22 | 1 | 1 | 43 |
4P LOSS WILD-TYPE | 177 | 64 | 52 | 98 |
P value = 3.54e-08 (Chi-square test), Q value = 2.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
4P LOSS MUTATED | 12 | 1 | 30 | 17 | 4 | 2 |
4P LOSS WILD-TYPE | 104 | 88 | 64 | 109 | 7 | 23 |
P value = 5.94e-07 (Fisher's exact test), Q value = 0.00045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
4P LOSS MUTATED | 15 | 25 | 26 |
4P LOSS WILD-TYPE | 209 | 55 | 131 |
P value = 8.29e-09 (Fisher's exact test), Q value = 6.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
4Q LOSS MUTATED | 35 | 1 | 3 | 46 |
4Q LOSS WILD-TYPE | 164 | 64 | 50 | 95 |
P value = 1.27e-07 (Chi-square test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
4Q LOSS MUTATED | 17 | 3 | 32 | 23 | 6 | 3 |
4Q LOSS WILD-TYPE | 99 | 86 | 62 | 103 | 5 | 22 |
P value = 8.23e-05 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
4Q LOSS MUTATED | 26 | 27 | 31 |
4Q LOSS WILD-TYPE | 198 | 53 | 126 |
P value = 3.68e-06 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
5P LOSS MUTATED | 22 | 6 | 4 |
5P LOSS WILD-TYPE | 117 | 104 | 210 |
P value = 8.78e-07 (Fisher's exact test), Q value = 0.00067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
5Q LOSS MUTATED | 22 | 3 | 4 |
5Q LOSS WILD-TYPE | 117 | 107 | 210 |
P value = 1.67e-07 (Chi-square test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
5Q LOSS MUTATED | 8 | 9 | 2 | 2 | 5 | 2 |
5Q LOSS WILD-TYPE | 108 | 80 | 92 | 124 | 6 | 23 |
P value = 0.00023 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 5 | 196 | 234 |
5Q LOSS MUTATED | 3 | 6 | 19 |
5Q LOSS WILD-TYPE | 2 | 190 | 215 |
P value = 1.5e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
8P LOSS MUTATED | 7 | 10 | 0 |
8P LOSS WILD-TYPE | 132 | 100 | 214 |
P value = 9.6e-05 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
8P LOSS MUTATED | 7 | 9 | 1 | 0 |
8P LOSS WILD-TYPE | 192 | 56 | 52 | 141 |
P value = 2.08e-07 (Chi-square test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
8P LOSS MUTATED | 1 | 10 | 0 | 2 | 3 | 1 |
8P LOSS WILD-TYPE | 115 | 79 | 94 | 124 | 8 | 24 |
P value = 2.93e-05 (Chi-square test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
8P LOSS MUTATED | 0 | 11 | 2 | 1 | 3 | 0 | 0 |
8P LOSS WILD-TYPE | 62 | 65 | 28 | 40 | 133 | 63 | 27 |
P value = 2.32e-05 (Chi-square test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
8P LOSS MUTATED | 0 | 11 | 1 | 2 | 0 | 2 | 1 |
8P LOSS WILD-TYPE | 87 | 66 | 54 | 122 | 39 | 20 | 30 |
P value = 0.000142 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
8Q LOSS MUTATED | 3 | 8 | 0 |
8Q LOSS WILD-TYPE | 136 | 102 | 214 |
P value = 1.59e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
8Q LOSS MUTATED | 2 | 8 | 1 | 0 |
8Q LOSS WILD-TYPE | 197 | 57 | 52 | 141 |
P value = 0.000108 (Chi-square test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
8Q LOSS MUTATED | 0 | 8 | 0 | 1 | 1 | 1 |
8Q LOSS WILD-TYPE | 116 | 81 | 94 | 125 | 10 | 24 |
P value = 0.000285 (Chi-square test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
8Q LOSS MUTATED | 0 | 8 | 1 | 0 | 2 | 0 | 0 |
8Q LOSS WILD-TYPE | 62 | 68 | 29 | 41 | 134 | 63 | 27 |
P value = 0.000231 (Chi-square test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
8Q LOSS MUTATED | 0 | 8 | 0 | 1 | 0 | 1 | 1 |
8Q LOSS WILD-TYPE | 87 | 69 | 55 | 123 | 39 | 21 | 30 |
P value = 4.22e-06 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
9P LOSS MUTATED | 40 | 39 | 28 |
9P LOSS WILD-TYPE | 99 | 71 | 186 |
P value = 0.000274 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
9P LOSS MUTATED | 56 | 23 | 7 | 19 |
9P LOSS WILD-TYPE | 143 | 42 | 46 | 122 |
P value = 4.58e-40 (Fisher's exact test), Q value = 3.8e-37
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
10P LOSS MUTATED | 4 | 67 | 5 |
10P LOSS WILD-TYPE | 135 | 43 | 209 |
P value = 2.75e-49 (Fisher's exact test), Q value = 2.3e-46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
10P LOSS MUTATED | 3 | 57 | 9 | 6 |
10P LOSS WILD-TYPE | 196 | 8 | 44 | 135 |
P value = 2.54e-07 (Fisher's exact test), Q value = 0.00019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
10P LOSS MUTATED | 4 | 24 | 3 | 6 |
10P LOSS WILD-TYPE | 48 | 38 | 65 | 68 |
P value = 2.15e-37 (Chi-square test), Q value = 1.8e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
10P LOSS MUTATED | 1 | 56 | 2 | 14 | 1 | 1 |
10P LOSS WILD-TYPE | 115 | 33 | 92 | 112 | 10 | 24 |
P value = 1.09e-08 (Fisher's exact test), Q value = 8.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
10P LOSS MUTATED | 59 | 2 | 14 |
10P LOSS WILD-TYPE | 165 | 78 | 143 |
P value = 1.58e-15 (Chi-square test), Q value = 1.3e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
10P LOSS MUTATED | 1 | 38 | 4 | 1 | 15 | 12 | 2 |
10P LOSS WILD-TYPE | 61 | 38 | 26 | 40 | 121 | 51 | 25 |
P value = 2.8e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 16 | 225 |
10P LOSS MUTATED | 16 | 2 | 55 |
10P LOSS WILD-TYPE | 178 | 14 | 170 |
P value = 1.13e-28 (Chi-square test), Q value = 9.3e-26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
10P LOSS MUTATED | 1 | 48 | 2 | 12 | 4 | 1 | 5 |
10P LOSS WILD-TYPE | 86 | 29 | 53 | 112 | 35 | 21 | 26 |
P value = 1.47e-33 (Fisher's exact test), Q value = 1.2e-30
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
10Q LOSS MUTATED | 16 | 68 | 7 |
10Q LOSS WILD-TYPE | 123 | 42 | 207 |
P value = 2.75e-40 (Fisher's exact test), Q value = 2.3e-37
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
10Q LOSS MUTATED | 17 | 57 | 10 | 6 |
10Q LOSS WILD-TYPE | 182 | 8 | 43 | 135 |
P value = 1.32e-06 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
10Q LOSS MUTATED | 6 | 27 | 7 | 7 |
10Q LOSS WILD-TYPE | 46 | 35 | 61 | 67 |
P value = 2.76e-35 (Chi-square test), Q value = 2.3e-32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
10Q LOSS MUTATED | 6 | 60 | 2 | 17 | 4 | 1 |
10Q LOSS WILD-TYPE | 110 | 29 | 92 | 109 | 7 | 24 |
P value = 4.69e-11 (Fisher's exact test), Q value = 3.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
10Q LOSS MUTATED | 71 | 2 | 17 |
10Q LOSS WILD-TYPE | 153 | 78 | 140 |
P value = 2.76e-16 (Chi-square test), Q value = 2.3e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
10Q LOSS MUTATED | 1 | 42 | 7 | 2 | 18 | 15 | 2 |
10Q LOSS WILD-TYPE | 61 | 34 | 23 | 39 | 118 | 48 | 25 |
P value = 4.17e-06 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 16 | 225 |
10Q LOSS MUTATED | 19 | 4 | 64 |
10Q LOSS WILD-TYPE | 175 | 12 | 161 |
P value = 1.19e-25 (Chi-square test), Q value = 9.8e-23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
10Q LOSS MUTATED | 3 | 51 | 4 | 14 | 7 | 3 | 5 |
10Q LOSS WILD-TYPE | 84 | 26 | 51 | 110 | 32 | 19 | 26 |
P value = 5.02e-14 (Fisher's exact test), Q value = 4.1e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
11P LOSS MUTATED | 41 | 11 | 4 |
11P LOSS WILD-TYPE | 98 | 99 | 210 |
P value = 1.23e-10 (Fisher's exact test), Q value = 9.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
11P LOSS MUTATED | 42 | 11 | 3 | 0 |
11P LOSS WILD-TYPE | 157 | 54 | 50 | 141 |
P value = 5.15e-12 (Chi-square test), Q value = 4.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
11P LOSS MUTATED | 11 | 21 | 0 | 9 | 7 | 7 |
11P LOSS WILD-TYPE | 105 | 68 | 94 | 117 | 4 | 18 |
P value = 8.73e-09 (Fisher's exact test), Q value = 6.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
11P LOSS MUTATED | 46 | 0 | 9 |
11P LOSS WILD-TYPE | 178 | 80 | 148 |
P value = 0.000202 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
11Q LOSS MUTATED | 9 | 9 | 1 |
11Q LOSS WILD-TYPE | 130 | 101 | 213 |
P value = 0.000147 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
11Q LOSS MUTATED | 8 | 9 | 2 | 0 |
11Q LOSS WILD-TYPE | 191 | 56 | 51 | 141 |
P value = 8.75e-08 (Chi-square test), Q value = 6.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
11Q LOSS MUTATED | 0 | 11 | 0 | 3 | 3 | 2 |
11Q LOSS WILD-TYPE | 116 | 78 | 94 | 123 | 8 | 23 |
P value = 2.11e-08 (Fisher's exact test), Q value = 1.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
12Q LOSS MUTATED | 32 | 2 | 13 |
12Q LOSS WILD-TYPE | 107 | 108 | 201 |
P value = 2.36e-07 (Fisher's exact test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
12Q LOSS MUTATED | 38 | 0 | 4 | 5 |
12Q LOSS WILD-TYPE | 161 | 65 | 49 | 136 |
P value = 3.5e-08 (Fisher's exact test), Q value = 2.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
13Q LOSS MUTATED | 55 | 22 | 27 |
13Q LOSS WILD-TYPE | 84 | 88 | 187 |
P value = 0.000151 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
14Q LOSS MUTATED | 24 | 23 | 6 | 16 |
14Q LOSS WILD-TYPE | 175 | 42 | 47 | 125 |
P value = 5.7e-05 (Chi-square test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
14Q LOSS MUTATED | 9 | 28 | 9 | 16 | 2 | 5 |
14Q LOSS WILD-TYPE | 107 | 61 | 85 | 110 | 9 | 20 |
P value = 0.000104 (Chi-square test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
14Q LOSS MUTATED | 9 | 27 | 5 | 15 | 5 | 2 | 6 |
14Q LOSS WILD-TYPE | 78 | 50 | 50 | 109 | 34 | 20 | 25 |
P value = 0.000104 (Chi-square test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
15Q LOSS MUTATED | 4 | 9 | 21 | 7 | 2 | 2 |
15Q LOSS WILD-TYPE | 112 | 80 | 73 | 119 | 9 | 23 |
P value = 4.53e-05 (Chi-square test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
16P LOSS MUTATED | 1 | 4 | 2 | 3 | 3 | 0 |
16P LOSS WILD-TYPE | 115 | 85 | 92 | 123 | 8 | 25 |
P value = 1.11e-35 (Fisher's exact test), Q value = 9.2e-33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
19Q LOSS MUTATED | 21 | 16 | 153 |
19Q LOSS WILD-TYPE | 118 | 94 | 61 |
P value = 1.07e-75 (Fisher's exact test), Q value = 9e-73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
19Q LOSS MUTATED | 27 | 4 | 16 | 140 |
19Q LOSS WILD-TYPE | 172 | 61 | 37 | 1 |
P value = 6.85e-42 (Chi-square test), Q value = 5.7e-39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
19Q LOSS MUTATED | 14 | 9 | 92 | 59 | 4 | 11 |
19Q LOSS WILD-TYPE | 102 | 80 | 2 | 67 | 7 | 14 |
P value = 1.33e-49 (Fisher's exact test), Q value = 1.1e-46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
19Q LOSS MUTATED | 28 | 79 | 82 |
19Q LOSS WILD-TYPE | 196 | 1 | 75 |
P value = 1.83e-16 (Chi-square test), Q value = 1.5e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 62 | 76 | 30 | 41 | 136 | 63 | 27 |
19Q LOSS MUTATED | 10 | 15 | 7 | 37 | 71 | 23 | 16 |
19Q LOSS WILD-TYPE | 52 | 61 | 23 | 4 | 65 | 40 | 11 |
P value = 7.94e-06 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 16 | 225 |
19Q LOSS MUTATED | 104 | 6 | 69 |
19Q LOSS WILD-TYPE | 90 | 10 | 156 |
P value = 3e-20 (Chi-square test), Q value = 2.5e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 87 | 77 | 55 | 124 | 39 | 22 | 31 |
19Q LOSS MUTATED | 13 | 14 | 49 | 65 | 15 | 6 | 17 |
19Q LOSS WILD-TYPE | 74 | 63 | 6 | 59 | 24 | 16 | 14 |
P value = 0.000259 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 5 | 196 | 234 |
19Q LOSS MUTATED | 0 | 99 | 80 |
19Q LOSS WILD-TYPE | 5 | 97 | 154 |
P value = 1.05e-06 (Chi-square test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
20P LOSS MUTATED | 2 | 0 | 0 | 0 | 2 | 1 |
20P LOSS WILD-TYPE | 114 | 89 | 94 | 126 | 9 | 24 |
P value = 0.000159 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
21Q LOSS MUTATED | 21 | 5 | 7 |
21Q LOSS WILD-TYPE | 118 | 105 | 207 |
P value = 7.69e-12 (Fisher's exact test), Q value = 6.2e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 139 | 110 | 214 |
22Q LOSS MUTATED | 23 | 25 | 2 |
22Q LOSS WILD-TYPE | 116 | 85 | 212 |
P value = 1.04e-07 (Fisher's exact test), Q value = 8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 199 | 65 | 53 | 141 |
22Q LOSS MUTATED | 20 | 20 | 7 | 3 |
22Q LOSS WILD-TYPE | 179 | 45 | 46 | 138 |
P value = 7.58e-05 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 52 | 62 | 68 | 74 |
22Q LOSS MUTATED | 2 | 18 | 5 | 4 |
22Q LOSS WILD-TYPE | 50 | 44 | 63 | 70 |
P value = 2.02e-07 (Chi-square test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
22Q LOSS MUTATED | 8 | 23 | 2 | 10 | 4 | 2 |
22Q LOSS WILD-TYPE | 108 | 66 | 92 | 116 | 7 | 23 |
P value = 0.000187 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
22Q LOSS MUTATED | 37 | 2 | 10 |
22Q LOSS WILD-TYPE | 187 | 78 | 147 |
P value = 1.05e-05 (Chi-square test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 116 | 89 | 94 | 126 | 11 | 25 |
XQ LOSS MUTATED | 9 | 13 | 23 | 10 | 5 | 0 |
XQ LOSS WILD-TYPE | 107 | 76 | 71 | 116 | 6 | 25 |
P value = 0.000162 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 224 | 80 | 157 |
XQ LOSS MUTATED | 29 | 21 | 10 |
XQ LOSS WILD-TYPE | 195 | 59 | 147 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtypes file = LGG-TP.transferedmergedcluster.txt
-
Number of patients = 463
-
Number of significantly arm-level cnvs = 79
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.