Clinical Features	CN_CNMF		METHLYATION_CNMF		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	3 (8%)	34	0.56757	1	0.087516	1	1	1	NA	NA	1	1	1	1
1q gain	10 (27%)	27	0.27436	1	0.72458	1	1	1	0.74864	1	0.68284	1	1	1
3p gain	8 (22%)	29	0.25405	1	0.42826	1	0.64427	1	0.42164	1	0.36522	1	1	1
3q gain	9 (24%)	28	0.13572	1	0.25053	1	1	1	0.22773	1	0.66522	1	1	1
5p gain	11 (30%)	26	0.15138	1	1	1	0.087331	1	0.074853	1	0.11002	1	0.2167	1
5q gain	7 (19%)	30	1	1	0.68	1	0.12131	1	0.040651	1	0.33043	1	0.35619	1
7p gain	10 (27%)	27	0.066666	1	1	1	0.098853	1	0.10531	1	0.21638	1	0.39451	1
7q gain	7 (19%)	30	0.43728	1	0.68	1	0.35239	1	0.34138	1	0.65217	1	1	1
8p gain	5 (14%)	32	1	1	1	1	0.6169	1	0.29729	1	0.33043	1	0.35619	1
8q gain	6 (16%)	31	0.67963	1	1	1	1	1	0.34138	1	0.65217	1	1	1
11p gain	6 (16%)	31	0.37069	1	1	1	0.26154	1	0.27077	1	1	1	1	1
11q gain	5 (14%)	32	0.63386	1	1	1	0.13579	1	0.10809	1	0.59826	1	0.61371	1
12p gain	7 (19%)	30	0.02874	1	0.68	1	0.62542	1	0.80134	1	0.30609	1	1	1
12q gain	7 (19%)	30	0.02874	1	0.68	1	0.62542	1	0.80134	1	0.30609	1	1	1
15q gain	5 (14%)	32	0.14439	1	0.34792	1	1	1	1	1	0.59826	1	0.61371	1
16p gain	8 (22%)	29	0.25405	1	1	1	0.66798	1	0.27107	1	0.3913	1	0.65761	1
16q gain	9 (24%)	28	0.13572	1	0.70339	1	0.41985	1	0.30505	1	0.21638	1	0.39451	1
17p gain	3 (8%)	34	0.072072	1	0.087516	1	0.38462	1	NA	NA	0.46154	1	0.42308	1
17q gain	7 (19%)	30	0.02874	1	1	1	1	1	0.49793	1	0.59826	1	0.61371	1
18p gain	3 (8%)	34	0.56757	1	0.5843	1	0.50769	1	NA	NA	0.48308	1	0.49231	1
19p gain	5 (14%)	32	0.63386	1	1	1	1	1	0.36548	1	0.59826	1	0.61371	1
19q gain	3 (8%)	34	0.56757	1	0.5843	1	0.50769	1	NA	NA	0.48308	1	0.49231	1
20p gain	3 (8%)	34	1	1	0.5843	1	1	1	NA	NA	1	1	1	1
20q gain	3 (8%)	34	1	1	0.5843	1	1	1	0.56385	1	1	1	1	1
1p loss	7 (19%)	30	0.20217	1	1	1	0.35239	1	1	1	0.65217	1	1	1
2q loss	3 (8%)	34	0.56757	1	0.5843	1	0.26154	1	1	1	0.22462	1	0.23846	1
4p loss	16 (43%)	21	0.051561	1	0.74631	1	0.42164	1	0.87945	1	0.43124	1	0.23286	1
4q loss	14 (38%)	23	0.30512	1	0.32767	1	0.70149	1	0.87945	1	0.26706	1	0.13025	1
5q loss	3 (8%)	34	0.56757	1	0.5843	1	1	1	NA	NA	1	1	1	1
6p loss	6 (16%)	31	0.066243	1	1	1	1	1	0.49793	1	0.59826	1	0.61371	1
6q loss	14 (38%)	23	0.73317	1	0.32767	1	1	1	0.08402	1	0.68284	1	1	1
8p loss	5 (14%)	32	1	1	1	1	1	1	NA	NA	1	1	1	1
9p loss	15 (41%)	22	0.0058752	1	1	1	0.42164	1	0.52354	1	0.43124	1	0.23286	1
9q loss	11 (30%)	26	0.15138	1	0.71947	1	0.42496	1	0.44943	1	0.42164	1	0.22797	1
10p loss	11 (30%)	26	0.15138	1	1	1	1	1	0.51206	1	0.42164	1	0.22797	1
10q loss	8 (22%)	29	0.70484	1	1	1	1	1	0.5194	1	0.19043	1	0.094565	1
11q loss	4 (11%)	33	1	1	0.036036	1	0.046154	1	0.036154	1	0.084615	1	0.063462	1
13q loss	18 (49%)	19	0.048853	1	0.10314	1	1	1	0.20279	1	1	1	0.69217	1
14q loss	16 (43%)	21	0.0089618	1	0.74631	1	0.10537	1	0.23508	1	0.43124	1	0.23286	1
15q loss	6 (16%)	31	0.37069	1	0.075231	1	0.62542	1	0.80134	1	0.30609	1	0.27893	1
16p loss	3 (8%)	34	0.56757	1	0.5843	1	1	1	NA	NA	0.20308	1	0.16923	1
16q loss	4 (11%)	33	0.29624	1	1	1	1	1	1	1	0.58	1	0.55577	1
17p loss	9 (24%)	28	1	1	1	1	0.19039	1	0.85953	1	0.3913	1	0.65761	1
17q loss	3 (8%)	34	1	1	0.5843	1	1	1	1	1	0.58	1	0.55577	1
18p loss	5 (14%)	32	1	1	0.64432	1	0.6169	1	0.6689	1	0.63478	1	0.61957	1
18q loss	9 (24%)	28	1	1	1	1	0.66798	1	0.85953	1	0.66522	1	0.40652	1
19q loss	3 (8%)	34	1	1	1	1	1	1	NA	NA	0.20308	1	0.16923	1
20p loss	7 (19%)	30	0.02874	1	0.097461	1	0.6169	1	0.8194	1	1	1	0.35619	1
20q loss	3 (8%)	34	0.072072	1	1	1	1	1	NA	NA	0.20308	1	1	1
21q loss	6 (16%)	31	0.066243	1	1	1	0.6169	1	0.6689	1	1	1	1	1
22q loss	29 (78%)	8	0.10357	1	0.10901	1	0.053208	1	0.15124	1	0.017057	1	0.023746	1
xq loss	7 (19%)	30	0.02874	1	0.0094185	1	1	1	0.037011	1	1	1	1	1