Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p34.2	7 (8%)	84	0.88315	1	0.12177	1	0.75499	1	1	1	1	1	0.64863	1	0.56585	1	0.65578	1
amp_1p12	15 (16%)	76	0.5328	1	0.18206	1	0.92162	1	0.58927	1	0.94565	1	1	1	0.72056	1	0.85187	1
amp_7q22.1	26 (29%)	65	0.0020064	0.596	0.0003587	0.11	0.1527	1	0.0058319	1	0.13048	1	0.05437	1	0.016922	1	0.019706	1
amp_8q24.21	36 (40%)	55	2.616e-06	0.000879	2.2447e-05	0.00739	0.17105	1	0.010227	1	0.14907	1	0.059931	1	0.026229	1	0.010937	1
amp_9p13.3	9 (10%)	82	0.13834	1	0.078582	1	0.38909	1	0.31948	1	0.15451	1	0.038075	1	0.3088	1	0.044187	1
amp_11p11.2	10 (11%)	81	0.0036989	1	0.011646	1	0.38501	1	0.23535	1	0.35702	1	0.42445	1	0.47332	1	0.14056	1
amp_12p13.33	15 (16%)	76	2.5164e-09	8.61e-07	0.0005908	0.177	0.24442	1	0.011224	1	0.82109	1	0.062891	1	0.11655	1	0.038653	1
amp_12p11.21	16 (18%)	75	6.0984e-09	2.08e-06	0.00014638	0.0471	0.48329	1	0.011224	1	0.97495	1	0.20732	1	0.089041	1	0.10034	1
amp_12q15	10 (11%)	81	0.00015431	0.0494	0.013014	1	0.12194	1	0.025723	1	0.46302	1	0.078204	1	0.022303	1	0.019912	1
amp_17p11.2	4 (4%)	87	0.11347	1	0.13146	1	0.80596	1	1	1	0.41769	1	0.82396	1	0.34489	1	0.56412	1
amp_17q21.32	9 (10%)	82	0.011518	1	0.078582	1	0.38501	1	0.52928	1	0.95949	1	0.42445	1	1	1	0.4786	1
amp_18q11.2	30 (33%)	61	2.8015e-12	9.64e-10	0.00025499	0.0796	0.021612	1	0.0021922	0.649	0.00040718	0.124	0.0051657	1	0.00041789	0.126	2.028e-05	0.00669
amp_19q13.2	23 (25%)	68	0.00029955	0.0929	0.0081926	1	0.088421	1	0.18729	1	0.10994	1	0.18098	1	0.24126	1	0.14301	1
amp_20q13.2	24 (26%)	67	9.6367e-05	0.0313	0.0089506	1	0.4925	1	0.18729	1	0.5326	1	0.48437	1	0.32487	1	0.14301	1
amp_xp22.11	5 (5%)	86	0.34632	1	0.36491	1	1	1	1	1	1	1	0.71211	1	0.84814	1	0.5974	1
amp_xq27.1	8 (9%)	83	0.12046	1	0.58639	1	0.30554	1	0.51488	1	0.78075	1	0.55042	1	1	1	0.35255	1
del_1p36.32	21 (23%)	70	0.00022013	0.0689	0.0011535	0.344	0.020027	1	0.0078821	1	0.71292	1	0.027683	1	0.12236	1	0.13102	1
del_1p36.11	30 (33%)	61	0.00016368	0.0522	9.1218e-06	0.00303	0.010415	1	0.0045272	1	0.23872	1	0.00306	0.89	0.019141	1	0.010512	1
del_1q42.2	3 (3%)	88	0.79553	1	0.18403	1	0.32245	1	0.31483	1	0.86401	1	1	1	0.59621	1	0.32362	1
del_2p23.3	11 (12%)	80	0.0054808	1	0.039061	1	0.19143	1	0.30199	1	0.60221	1	0.032207	1	0.41812	1	0.04383	1
del_3p24.1	19 (21%)	72	0.00034413	0.106	0.047455	1	0.69798	1	0.4969	1	0.77507	1	0.60613	1	0.56197	1	0.26216	1
del_4q35.2	16 (18%)	75	0.2107	1	0.034912	1	0.26526	1	0.77254	1	0.89848	1	1	1	0.87502	1	0.66658	1
del_5q14.2	19 (21%)	72	0.00013095	0.0424	0.047455	1	0.47842	1	0.32538	1	0.63303	1	0.27677	1	0.13422	1	0.26216	1
del_6p25.2	38 (42%)	53	4.4304e-07	0.00015	5.9748e-06	0.00199	0.07757	1	0.00036933	0.113	0.011263	1	0.059931	1	0.010692	1	0.0049317	1
del_7q36.1	9 (10%)	82	0.011518	1	0.19333	1	0.56343	1	0.31948	1	0.64225	1	0.62437	1	0.80159	1	0.71181	1
del_8p21.3	26 (29%)	65	0.00021767	0.0683	0.00042527	0.128	0.022489	1	0.00041499	0.126	0.19019	1	0.027968	1	0.011273	1	0.014253	1
del_8q12.1	7 (8%)	84	0.58748	1	0.053647	1	0.59393	1	0.31098	1	0.45684	1	0.8816	1	0.26535	1	0.15335	1
del_9p21.3	58 (64%)	33	1.1706e-08	3.98e-06	1.16e-09	3.98e-07	0.00029203	0.0908	0.0001521	0.0488	1.0912e-05	0.00361	0.00018335	0.0579	2.5604e-05	0.00837	2.5416e-05	0.00834
del_9q22.33	24 (26%)	67	0.14428	1	0.084938	1	0.95241	1	1	1	0.50951	1	0.90764	1	0.42251	1	0.68142	1
del_9q32	23 (25%)	68	0.088943	1	0.39986	1	1	1	1	1	0.93109	1	0.82734	1	0.90514	1	0.61403	1
del_10q23.2	16 (18%)	75	7.6648e-05	0.025	0.015793	1	0.48329	1	0.10176	1	0.80447	1	0.0081692	1	0.70078	1	0.10034	1
del_11p15.4	15 (16%)	76	0.014702	1	0.38018	1	0.85696	1	1	1	0.62409	1	0.79128	1	0.74082	1	1	1
del_12p12.1	11 (12%)	80	0.00033989	0.105	0.0051314	1	0.31233	1	0.19132	1	0.094464	1	0.33612	1	0.30887	1	0.070749	1
del_12q12	11 (12%)	80	0.00017869	0.0566	0.002215	0.651	0.31233	1	0.19132	1	0.20021	1	0.010259	1	0.30887	1	0.0088337	1
del_12q24.33	19 (21%)	72	0.00013095	0.0424	0.0010174	0.304	0.11161	1	0.0027676	0.811	0.65147	1	0.012971	1	0.48715	1	0.21324	1
del_16q23.1	6 (7%)	85	0.13638	1	0.11846	1	0.50338	1	0.66713	1	0.92445	1	0.71211	1	0.84814	1	0.85199	1
del_17q22	25 (27%)	66	1.1651e-07	3.95e-05	0.0003587	0.11	0.012516	1	0.0058319	1	0.049961	1	0.05437	1	0.016922	1	0.019706	1
del_18p11.32	34 (37%)	57	0.82689	1	0.061258	1	0.38225	1	1	1	0.57394	1	0.49819	1	1	1	0.83464	1
del_18q21.2	65 (71%)	26	3.5588e-06	0.00119	0.00017489	0.0556	0.0888	1	0.0074264	1	0.012366	1	0.1659	1	0.0057918	1	0.020072	1
del_19p13.3	17 (19%)	74	4.1907e-06	0.0014	0.0029432	0.859	0.10773	1	0.0049625	1	0.56768	1	0.19591	1	0.12537	1	0.49206	1
del_19q13.41	10 (11%)	81	0.014126	1	0.032504	1	0.59841	1	0.52928	1	0.58311	1	0.81736	1	0.7421	1	0.81675	1
del_21q21.1	35 (38%)	56	1.4225e-06	0.000479	0.0038083	1	0.0073119	1	0.0021972	0.649	0.0078534	1	0.043796	1	0.0070283	1	0.046175	1
del_22q13.31	27 (30%)	64	0.00021091	0.0664	0.0055334	1	0.020146	1	0.076382	1	0.070316	1	0.050695	1	0.0095519	1	0.08696	1