This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 79 arm-level events and 10 molecular subtypes across 351 patients, 173 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF'.
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1q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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2p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF'.
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7q gain cnv correlated to 'CN_CNMF'.
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8p gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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10q gain cnv correlated to 'CN_CNMF'.
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11q gain cnv correlated to 'MIRSEQ_CNMF'.
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13q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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1p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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1q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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2q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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3p loss cnv correlated to 'CN_CNMF'.
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3q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF'.
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6q loss cnv correlated to 'CN_CNMF'.
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7q loss cnv correlated to 'CN_CNMF'.
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8p loss cnv correlated to 'CN_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF'.
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10q loss cnv correlated to 'CN_CNMF'.
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11p loss cnv correlated to 'CN_CNMF'.
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11q loss cnv correlated to 'CN_CNMF'.
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12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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13q loss cnv correlated to 'CN_CNMF'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF'.
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18q loss cnv correlated to 'CN_CNMF'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p loss cnv correlated to 'MRNASEQ_CNMF'.
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21q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
6p gain | 65 (19%) | 286 |
1.68e-12 (1.3e-09) |
5.12e-09 (3.84e-06) |
0.0791 (1.00) |
0.273 (1.00) |
7.36e-05 (0.0479) |
3.2e-05 (0.0214) |
5.5e-06 (0.00386) |
9.35e-05 (0.0604) |
6.83e-05 (0.0446) |
1.38e-06 (0.000993) |
16p loss | 74 (21%) | 277 |
3.13e-17 (2.46e-14) |
0.000101 (0.0648) |
0.812 (1.00) |
0.807 (1.00) |
4.08e-10 (3.11e-07) |
5.3e-07 (0.000387) |
1.71e-06 (0.00123) |
0.000183 (0.116) |
3.1e-06 (0.00221) |
4.86e-06 (0.00342) |
19p loss | 89 (25%) | 262 |
2.38e-23 (1.88e-20) |
2.03e-12 (1.57e-09) |
0.0081 (1.00) |
0.568 (1.00) |
3.2e-12 (2.48e-09) |
8.83e-12 (6.81e-09) |
1.22e-06 (0.000885) |
1.13e-12 (8.77e-10) |
0.000368 (0.228) |
2.23e-10 (1.71e-07) |
5p gain | 79 (23%) | 272 |
1.51e-14 (1.18e-11) |
1.01e-05 (0.00694) |
0.26 (1.00) |
0.724 (1.00) |
1.59e-06 (0.00114) |
2.65e-05 (0.0178) |
0.00011 (0.0703) |
6.98e-06 (0.00488) |
0.00271 (1.00) |
1.31e-06 (0.000949) |
6q gain | 54 (15%) | 297 |
1e-10 (7.69e-08) |
1.36e-05 (0.00934) |
0.0868 (1.00) |
0.441 (1.00) |
1.77e-05 (0.0121) |
0.00022 (0.138) |
2.45e-05 (0.0165) |
0.0119 (1.00) |
0.000189 (0.12) |
2.91e-05 (0.0195) |
20q gain | 223 (64%) | 128 |
1.86e-18 (1.47e-15) |
3.11e-09 (2.34e-06) |
0.0527 (1.00) |
0.967 (1.00) |
1.84e-06 (0.00132) |
9.31e-05 (0.0603) |
3.3e-06 (0.00234) |
1.27e-09 (9.66e-07) |
0.0313 (1.00) |
2.97e-09 (2.24e-06) |
9p loss | 113 (32%) | 238 |
5.95e-21 (4.69e-18) |
1.76e-05 (0.012) |
0.00104 (0.611) |
0.0388 (1.00) |
1.72e-08 (1.28e-05) |
5.88e-05 (0.0386) |
0.000317 (0.197) |
8.3e-06 (0.00576) |
0.229 (1.00) |
4.06e-06 (0.00287) |
16q loss | 83 (24%) | 268 |
2.89e-16 (2.25e-13) |
1.02e-06 (0.000738) |
0.0464 (1.00) |
0.564 (1.00) |
4.99e-08 (3.7e-05) |
8.21e-06 (0.00571) |
1.96e-05 (0.0133) |
5.64e-05 (0.0371) |
0.00443 (1.00) |
8.99e-06 (0.00622) |
17p loss | 123 (35%) | 228 |
1.7e-21 (1.34e-18) |
1.33e-11 (1.02e-08) |
0.463 (1.00) |
0.809 (1.00) |
4.44e-06 (0.00314) |
1.74e-06 (0.00125) |
0.000134 (0.0856) |
1.38e-05 (0.00946) |
0.00278 (1.00) |
4.59e-08 (3.41e-05) |
19q loss | 69 (20%) | 282 |
1.31e-16 (1.03e-13) |
8.33e-10 (6.33e-07) |
0.0174 (1.00) |
0.1 (1.00) |
1.55e-07 (0.000114) |
2.43e-06 (0.00174) |
3.42e-05 (0.0227) |
1.7e-09 (1.28e-06) |
0.000656 (0.396) |
5.02e-08 (3.72e-05) |
5q loss | 76 (22%) | 275 |
1.37e-11 (1.05e-08) |
1.11e-07 (8.18e-05) |
0.615 (1.00) |
0.929 (1.00) |
2.34e-07 (0.000172) |
6.63e-06 (0.00465) |
0.000555 (0.337) |
9.55e-07 (0.000694) |
0.00103 (0.606) |
9.77e-08 (7.22e-05) |
15q loss | 72 (21%) | 279 |
2.02e-08 (1.51e-05) |
0.00143 (0.827) |
0.00512 (1.00) |
0.0693 (1.00) |
7.74e-05 (0.0503) |
7.52e-05 (0.0489) |
0.000209 (0.132) |
1.25e-05 (0.00857) |
0.00245 (1.00) |
9.84e-05 (0.0635) |
4p loss | 130 (37%) | 221 |
1.53e-16 (1.19e-13) |
3.29e-05 (0.0219) |
0.212 (1.00) |
0.34 (1.00) |
0.000527 (0.321) |
0.00075 (0.45) |
4.69e-05 (0.031) |
6.01e-07 (0.000437) |
0.00384 (1.00) |
8.87e-06 (0.00614) |
4q loss | 128 (36%) | 223 |
5.37e-18 (4.22e-15) |
4.35e-06 (0.00307) |
0.0506 (1.00) |
0.249 (1.00) |
0.00597 (1.00) |
0.00156 (0.892) |
0.000273 (0.17) |
2.93e-06 (0.00209) |
0.0225 (1.00) |
2.23e-05 (0.015) |
12p loss | 47 (13%) | 304 |
5.29e-14 (4.12e-11) |
3.24e-10 (2.48e-07) |
0.249 (1.00) |
0.51 (1.00) |
1.92e-05 (0.013) |
0.000519 (0.317) |
0.00316 (1.00) |
3.78e-05 (0.0251) |
0.0551 (1.00) |
1.7e-07 (0.000125) |
22q loss | 111 (32%) | 240 |
3.02e-17 (2.37e-14) |
7.47e-06 (0.00521) |
0.0151 (1.00) |
0.484 (1.00) |
0.000971 (0.574) |
0.00173 (0.987) |
5.75e-06 (0.00403) |
3.89e-08 (2.9e-05) |
0.0342 (1.00) |
1.34e-06 (0.000966) |
20p gain | 194 (55%) | 157 |
1.14e-12 (8.86e-10) |
6.57e-05 (0.043) |
0.0842 (1.00) |
0.704 (1.00) |
0.000777 (0.463) |
0.00863 (1.00) |
0.000438 (0.27) |
5.98e-05 (0.0392) |
0.0168 (1.00) |
0.000142 (0.0905) |
21q gain | 21 (6%) | 330 |
2.54e-05 (0.0171) |
0.000206 (0.13) |
0.14 (1.00) |
0.666 (1.00) |
0.0101 (1.00) |
0.0656 (1.00) |
0.0175 (1.00) |
0.000153 (0.0975) |
0.119 (1.00) |
3.84e-05 (0.0255) |
3q loss | 45 (13%) | 306 |
4.13e-07 (0.000301) |
0.00315 (1.00) |
0.198 (1.00) |
0.292 (1.00) |
7.5e-06 (0.00522) |
4.31e-05 (0.0285) |
4.7e-05 (0.031) |
0.00126 (0.73) |
0.00584 (1.00) |
0.00447 (1.00) |
14q loss | 84 (24%) | 267 |
3.55e-09 (2.67e-06) |
2.93e-05 (0.0196) |
0.559 (1.00) |
0.471 (1.00) |
0.000608 (0.367) |
0.00025 (0.156) |
0.000465 (0.286) |
0.00238 (1.00) |
0.0331 (1.00) |
2.08e-05 (0.0141) |
18p gain | 66 (19%) | 285 |
2.57e-06 (0.00183) |
4.66e-06 (0.00328) |
0.0566 (1.00) |
0.502 (1.00) |
0.0158 (1.00) |
0.076 (1.00) |
0.00272 (1.00) |
0.000126 (0.0808) |
0.0595 (1.00) |
0.00106 (0.624) |
9q loss | 78 (22%) | 273 |
2.37e-10 (1.81e-07) |
0.00178 (1.00) |
0.183 (1.00) |
0.287 (1.00) |
3.51e-05 (0.0233) |
0.00357 (1.00) |
0.00793 (1.00) |
0.00285 (1.00) |
0.0744 (1.00) |
0.000375 (0.232) |
17q loss | 56 (16%) | 295 |
3.92e-08 (2.91e-05) |
7.46e-06 (0.00521) |
0.283 (1.00) |
1 (1.00) |
0.00193 (1.00) |
0.000413 (0.255) |
0.00105 (0.615) |
0.000767 (0.458) |
0.0771 (1.00) |
0.000158 (0.1) |
1q gain | 83 (24%) | 268 |
2.13e-09 (1.61e-06) |
0.00228 (1.00) |
0.0414 (1.00) |
0.145 (1.00) |
9.09e-06 (0.00628) |
0.00764 (1.00) |
0.000595 (0.36) |
0.0012 (0.699) |
0.00512 (1.00) |
0.00264 (1.00) |
2p gain | 60 (17%) | 291 |
1.13e-06 (0.000822) |
0.00808 (1.00) |
0.0211 (1.00) |
0.967 (1.00) |
0.117 (1.00) |
0.255 (1.00) |
0.000483 (0.296) |
0.00799 (1.00) |
0.00546 (1.00) |
0.000151 (0.0961) |
10p gain | 84 (24%) | 267 |
4.67e-12 (3.61e-09) |
1.67e-05 (0.0114) |
0.104 (1.00) |
0.429 (1.00) |
0.00075 (0.45) |
0.0199 (1.00) |
0.00798 (1.00) |
0.000548 (0.333) |
0.0849 (1.00) |
0.00209 (1.00) |
13q gain | 121 (34%) | 230 |
8.41e-12 (6.49e-09) |
0.00122 (0.706) |
0.567 (1.00) |
0.348 (1.00) |
0.0222 (1.00) |
0.796 (1.00) |
0.00133 (0.768) |
0.00251 (1.00) |
0.0117 (1.00) |
0.000223 (0.14) |
xq gain | 43 (12%) | 308 |
1.35e-05 (0.00925) |
0.000149 (0.0948) |
0.608 (1.00) |
0.141 (1.00) |
0.0267 (1.00) |
0.344 (1.00) |
0.0112 (1.00) |
0.451 (1.00) |
0.0623 (1.00) |
0.0362 (1.00) |
1p loss | 45 (13%) | 306 |
2.41e-06 (0.00172) |
6.22e-05 (0.0407) |
0.0562 (1.00) |
0.586 (1.00) |
0.0353 (1.00) |
0.0592 (1.00) |
0.00657 (1.00) |
0.00341 (1.00) |
0.214 (1.00) |
0.0158 (1.00) |
1q loss | 20 (6%) | 331 |
0.000245 (0.153) |
0.000211 (0.133) |
0.0328 (1.00) |
0.0735 (1.00) |
0.487 (1.00) |
0.0424 (1.00) |
0.354 (1.00) |
0.221 (1.00) |
0.451 (1.00) |
0.155 (1.00) |
2q loss | 22 (6%) | 329 |
0.000202 (0.128) |
8.32e-05 (0.0539) |
0.852 (1.00) |
0.653 (1.00) |
0.0502 (1.00) |
0.511 (1.00) |
0.0504 (1.00) |
0.0198 (1.00) |
0.227 (1.00) |
0.171 (1.00) |
12q loss | 37 (11%) | 314 |
4.03e-10 (3.07e-07) |
2.19e-06 (0.00157) |
0.497 (1.00) |
1 (1.00) |
0.00256 (1.00) |
0.101 (1.00) |
0.2 (1.00) |
0.00117 (0.685) |
0.498 (1.00) |
0.00255 (1.00) |
21q loss | 132 (38%) | 219 |
1.56e-11 (1.2e-08) |
0.00622 (1.00) |
0.127 (1.00) |
0.254 (1.00) |
0.0243 (1.00) |
4.47e-05 (0.0296) |
0.00358 (1.00) |
0.00515 (1.00) |
0.0161 (1.00) |
0.01 (1.00) |
1p gain | 38 (11%) | 313 |
6.76e-06 (0.00473) |
0.0422 (1.00) |
0.00445 (1.00) |
0.0652 (1.00) |
0.00758 (1.00) |
0.383 (1.00) |
0.0804 (1.00) |
0.183 (1.00) |
0.000498 (0.305) |
0.131 (1.00) |
2q gain | 51 (15%) | 300 |
1.78e-05 (0.0121) |
0.114 (1.00) |
0.223 (1.00) |
0.736 (1.00) |
0.0285 (1.00) |
0.0715 (1.00) |
0.025 (1.00) |
0.0624 (1.00) |
0.0334 (1.00) |
0.0138 (1.00) |
7p gain | 155 (44%) | 196 |
2.78e-11 (2.13e-08) |
0.000757 (0.453) |
0.639 (1.00) |
0.925 (1.00) |
0.39 (1.00) |
0.101 (1.00) |
0.395 (1.00) |
0.223 (1.00) |
0.134 (1.00) |
0.00902 (1.00) |
7q gain | 134 (38%) | 217 |
4.83e-09 (3.63e-06) |
0.0213 (1.00) |
0.848 (1.00) |
0.649 (1.00) |
0.511 (1.00) |
0.318 (1.00) |
0.929 (1.00) |
0.87 (1.00) |
0.624 (1.00) |
0.227 (1.00) |
8p gain | 148 (42%) | 203 |
1.92e-05 (0.013) |
0.0132 (1.00) |
0.642 (1.00) |
0.548 (1.00) |
0.257 (1.00) |
0.0977 (1.00) |
0.644 (1.00) |
0.727 (1.00) |
0.0638 (1.00) |
0.502 (1.00) |
10q gain | 59 (17%) | 292 |
4.12e-10 (3.13e-07) |
0.0101 (1.00) |
0.0906 (1.00) |
0.474 (1.00) |
0.0045 (1.00) |
0.0427 (1.00) |
0.021 (1.00) |
0.0453 (1.00) |
0.354 (1.00) |
0.00536 (1.00) |
11q gain | 51 (15%) | 300 |
0.00153 (0.876) |
0.0132 (1.00) |
0.799 (1.00) |
0.703 (1.00) |
0.263 (1.00) |
0.00273 (1.00) |
0.000398 (0.246) |
0.0092 (1.00) |
0.00897 (1.00) |
0.0084 (1.00) |
15q gain | 31 (9%) | 320 |
2.93e-05 (0.0196) |
0.00159 (0.908) |
0.233 (1.00) |
0.783 (1.00) |
0.0266 (1.00) |
0.066 (1.00) |
0.625 (1.00) |
0.209 (1.00) |
0.569 (1.00) |
0.0275 (1.00) |
3p loss | 72 (21%) | 279 |
5.94e-08 (4.4e-05) |
0.0521 (1.00) |
0.331 (1.00) |
0.455 (1.00) |
0.00177 (1.00) |
0.000871 (0.516) |
0.00139 (0.806) |
0.0569 (1.00) |
0.0607 (1.00) |
0.0148 (1.00) |
5p loss | 46 (13%) | 305 |
3.22e-06 (0.00229) |
0.000503 (0.307) |
0.227 (1.00) |
0.512 (1.00) |
0.00345 (1.00) |
0.0106 (1.00) |
0.022 (1.00) |
0.0328 (1.00) |
0.00772 (1.00) |
0.00441 (1.00) |
6p loss | 41 (12%) | 310 |
1.76e-07 (0.000129) |
0.0206 (1.00) |
0.146 (1.00) |
0.256 (1.00) |
0.0248 (1.00) |
0.0408 (1.00) |
0.212 (1.00) |
0.00433 (1.00) |
0.168 (1.00) |
0.00114 (0.669) |
6q loss | 53 (15%) | 298 |
1.6e-07 (0.000118) |
0.0171 (1.00) |
0.749 (1.00) |
0.752 (1.00) |
0.0308 (1.00) |
0.154 (1.00) |
0.558 (1.00) |
0.032 (1.00) |
0.706 (1.00) |
0.0296 (1.00) |
7q loss | 23 (7%) | 328 |
2.43e-05 (0.0164) |
0.000841 (0.5) |
0.431 (1.00) |
0.528 (1.00) |
0.00573 (1.00) |
0.0486 (1.00) |
0.0381 (1.00) |
0.0417 (1.00) |
0.00147 (0.847) |
0.057 (1.00) |
8p loss | 62 (18%) | 289 |
1.74e-08 (1.3e-05) |
0.0298 (1.00) |
0.388 (1.00) |
0.341 (1.00) |
0.00517 (1.00) |
0.0029 (1.00) |
0.00166 (0.946) |
0.0011 (0.645) |
0.00596 (1.00) |
0.0394 (1.00) |
10p loss | 44 (13%) | 307 |
9.96e-06 (0.00687) |
0.0241 (1.00) |
0.534 (1.00) |
0.268 (1.00) |
0.021 (1.00) |
0.0137 (1.00) |
0.0147 (1.00) |
0.0516 (1.00) |
0.144 (1.00) |
0.056 (1.00) |
10q loss | 49 (14%) | 302 |
1.59e-08 (1.19e-05) |
0.0059 (1.00) |
0.632 (1.00) |
0.64 (1.00) |
0.00265 (1.00) |
0.00817 (1.00) |
0.028 (1.00) |
0.0437 (1.00) |
0.407 (1.00) |
0.109 (1.00) |
11p loss | 50 (14%) | 301 |
2.45e-07 (0.00018) |
0.0122 (1.00) |
0.00905 (1.00) |
0.503 (1.00) |
0.0747 (1.00) |
0.0168 (1.00) |
0.693 (1.00) |
0.0191 (1.00) |
0.432 (1.00) |
0.0228 (1.00) |
11q loss | 46 (13%) | 305 |
0.000309 (0.192) |
0.187 (1.00) |
0.517 (1.00) |
0.955 (1.00) |
0.714 (1.00) |
0.528 (1.00) |
0.636 (1.00) |
0.221 (1.00) |
0.712 (1.00) |
0.236 (1.00) |
13q loss | 31 (9%) | 320 |
7.08e-05 (0.0462) |
0.637 (1.00) |
0.676 (1.00) |
0.138 (1.00) |
0.279 (1.00) |
0.539 (1.00) |
0.728 (1.00) |
0.445 (1.00) |
0.315 (1.00) |
0.819 (1.00) |
18p loss | 100 (28%) | 251 |
0.000102 (0.0654) |
0.569 (1.00) |
0.68 (1.00) |
0.0836 (1.00) |
0.451 (1.00) |
0.309 (1.00) |
0.1 (1.00) |
0.44 (1.00) |
0.0498 (1.00) |
0.319 (1.00) |
18q loss | 124 (35%) | 227 |
1.89e-09 (1.43e-06) |
0.0389 (1.00) |
0.338 (1.00) |
0.366 (1.00) |
0.0125 (1.00) |
0.0242 (1.00) |
0.00255 (1.00) |
0.0138 (1.00) |
0.118 (1.00) |
0.0126 (1.00) |
20p loss | 18 (5%) | 333 |
0.0164 (1.00) |
0.000691 (0.416) |
1 (1.00) |
0.525 (1.00) |
0.000249 (0.156) |
0.268 (1.00) |
0.0676 (1.00) |
0.756 (1.00) |
0.726 (1.00) |
0.356 (1.00) |
xq loss | 43 (12%) | 308 |
3.48e-07 (0.000255) |
0.000701 (0.421) |
0.262 (1.00) |
0.806 (1.00) |
0.0563 (1.00) |
0.0144 (1.00) |
0.0326 (1.00) |
0.446 (1.00) |
0.0142 (1.00) |
0.855 (1.00) |
3p gain | 39 (11%) | 312 |
0.00199 (1.00) |
0.0268 (1.00) |
0.789 (1.00) |
0.0761 (1.00) |
0.648 (1.00) |
0.437 (1.00) |
0.565 (1.00) |
0.125 (1.00) |
0.42 (1.00) |
0.0455 (1.00) |
3q gain | 66 (19%) | 285 |
0.00926 (1.00) |
0.227 (1.00) |
0.852 (1.00) |
0.326 (1.00) |
0.193 (1.00) |
0.0628 (1.00) |
0.932 (1.00) |
0.77 (1.00) |
0.755 (1.00) |
0.379 (1.00) |
4p gain | 14 (4%) | 337 |
0.345 (1.00) |
0.81 (1.00) |
0.913 (1.00) |
1 (1.00) |
0.311 (1.00) |
0.469 (1.00) |
0.729 (1.00) |
0.673 (1.00) |
0.785 (1.00) |
0.67 (1.00) |
4q gain | 9 (3%) | 342 |
0.385 (1.00) |
1 (1.00) |
0.692 (1.00) |
0.488 (1.00) |
0.0418 (1.00) |
0.878 (1.00) |
1 (1.00) |
0.695 (1.00) |
0.517 (1.00) |
0.583 (1.00) |
5q gain | 34 (10%) | 317 |
0.00047 (0.289) |
0.0665 (1.00) |
0.644 (1.00) |
0.733 (1.00) |
0.0933 (1.00) |
0.125 (1.00) |
0.054 (1.00) |
0.17 (1.00) |
0.158 (1.00) |
0.0783 (1.00) |
8q gain | 200 (57%) | 151 |
0.00408 (1.00) |
0.0114 (1.00) |
0.865 (1.00) |
0.0715 (1.00) |
0.0155 (1.00) |
0.264 (1.00) |
0.022 (1.00) |
0.0426 (1.00) |
0.00111 (0.649) |
0.0387 (1.00) |
9p gain | 44 (13%) | 307 |
0.0801 (1.00) |
0.821 (1.00) |
0.551 (1.00) |
0.59 (1.00) |
0.359 (1.00) |
0.415 (1.00) |
0.676 (1.00) |
0.71 (1.00) |
0.808 (1.00) |
0.333 (1.00) |
9q gain | 56 (16%) | 295 |
0.102 (1.00) |
0.673 (1.00) |
0.32 (1.00) |
0.732 (1.00) |
0.61 (1.00) |
0.493 (1.00) |
0.837 (1.00) |
0.829 (1.00) |
0.875 (1.00) |
0.484 (1.00) |
11p gain | 42 (12%) | 309 |
0.0209 (1.00) |
0.068 (1.00) |
0.897 (1.00) |
0.81 (1.00) |
0.248 (1.00) |
0.0072 (1.00) |
0.00148 (0.854) |
0.0331 (1.00) |
0.201 (1.00) |
0.0516 (1.00) |
12p gain | 74 (21%) | 277 |
0.0571 (1.00) |
0.462 (1.00) |
0.24 (1.00) |
0.141 (1.00) |
0.154 (1.00) |
0.312 (1.00) |
0.071 (1.00) |
0.79 (1.00) |
0.0109 (1.00) |
0.217 (1.00) |
12q gain | 64 (18%) | 287 |
0.351 (1.00) |
0.974 (1.00) |
0.407 (1.00) |
0.179 (1.00) |
0.958 (1.00) |
0.777 (1.00) |
0.688 (1.00) |
0.745 (1.00) |
0.14 (1.00) |
0.779 (1.00) |
14q gain | 23 (7%) | 328 |
0.000903 (0.534) |
0.211 (1.00) |
0.799 (1.00) |
0.777 (1.00) |
0.589 (1.00) |
0.848 (1.00) |
0.0405 (1.00) |
0.897 (1.00) |
0.258 (1.00) |
0.764 (1.00) |
16p gain | 52 (15%) | 299 |
0.072 (1.00) |
0.011 (1.00) |
0.38 (1.00) |
0.151 (1.00) |
0.0667 (1.00) |
0.343 (1.00) |
0.76 (1.00) |
0.0896 (1.00) |
0.943 (1.00) |
0.495 (1.00) |
16q gain | 41 (12%) | 310 |
0.146 (1.00) |
0.329 (1.00) |
0.688 (1.00) |
0.146 (1.00) |
0.121 (1.00) |
0.514 (1.00) |
0.586 (1.00) |
0.214 (1.00) |
0.941 (1.00) |
0.883 (1.00) |
17p gain | 22 (6%) | 329 |
0.0115 (1.00) |
0.663 (1.00) |
0.727 (1.00) |
0.2 (1.00) |
0.283 (1.00) |
0.734 (1.00) |
0.542 (1.00) |
0.0944 (1.00) |
0.601 (1.00) |
0.791 (1.00) |
17q gain | 46 (13%) | 305 |
0.00384 (1.00) |
0.49 (1.00) |
0.937 (1.00) |
0.94 (1.00) |
0.477 (1.00) |
0.388 (1.00) |
0.664 (1.00) |
0.894 (1.00) |
0.758 (1.00) |
0.947 (1.00) |
18q gain | 45 (13%) | 306 |
0.00347 (1.00) |
0.0218 (1.00) |
0.473 (1.00) |
0.481 (1.00) |
0.325 (1.00) |
0.649 (1.00) |
0.0395 (1.00) |
0.0229 (1.00) |
0.0825 (1.00) |
0.118 (1.00) |
19p gain | 44 (13%) | 307 |
0.0287 (1.00) |
0.826 (1.00) |
0.473 (1.00) |
0.0374 (1.00) |
0.665 (1.00) |
0.866 (1.00) |
0.692 (1.00) |
0.558 (1.00) |
0.408 (1.00) |
0.582 (1.00) |
19q gain | 61 (17%) | 290 |
0.00155 (0.887) |
0.401 (1.00) |
0.214 (1.00) |
0.0795 (1.00) |
0.0215 (1.00) |
0.0827 (1.00) |
0.112 (1.00) |
0.132 (1.00) |
0.226 (1.00) |
0.143 (1.00) |
22q gain | 27 (8%) | 324 |
0.0105 (1.00) |
0.179 (1.00) |
0.834 (1.00) |
0.392 (1.00) |
0.236 (1.00) |
0.645 (1.00) |
0.456 (1.00) |
0.639 (1.00) |
0.373 (1.00) |
0.575 (1.00) |
2p loss | 18 (5%) | 333 |
0.00287 (1.00) |
0.000821 (0.489) |
0.52 (1.00) |
0.769 (1.00) |
0.0663 (1.00) |
0.289 (1.00) |
0.128 (1.00) |
0.108 (1.00) |
0.333 (1.00) |
0.538 (1.00) |
7p loss | 12 (3%) | 339 |
0.00346 (1.00) |
0.00187 (1.00) |
0.444 (1.00) |
0.577 (1.00) |
0.000584 (0.354) |
0.139 (1.00) |
0.198 (1.00) |
0.118 (1.00) |
0.0101 (1.00) |
0.0334 (1.00) |
8q loss | 17 (5%) | 334 |
0.025 (1.00) |
0.522 (1.00) |
1 (1.00) |
0.769 (1.00) |
0.851 (1.00) |
0.419 (1.00) |
0.466 (1.00) |
0.565 (1.00) |
0.814 (1.00) |
0.47 (1.00) |
P value = 6.76e-06 (Chi-square test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
1P GAIN MUTATED | 3 | 4 | 10 | 1 | 20 |
1P GAIN WILD-TYPE | 156 | 29 | 52 | 11 | 65 |
P value = 2.13e-09 (Chi-square test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
1Q GAIN MUTATED | 12 | 11 | 18 | 5 | 37 |
1Q GAIN WILD-TYPE | 147 | 22 | 44 | 7 | 48 |
P value = 9.09e-06 (Chi-square test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
1Q GAIN MUTATED | 11 | 7 | 8 | 9 | 30 |
1Q GAIN WILD-TYPE | 54 | 55 | 38 | 28 | 32 |
P value = 1.13e-06 (Chi-square test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
2P GAIN MUTATED | 8 | 12 | 17 | 2 | 21 |
2P GAIN WILD-TYPE | 151 | 21 | 45 | 10 | 64 |
P value = 0.000151 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
2P GAIN MUTATED | 21 | 22 | 5 |
2P GAIN WILD-TYPE | 43 | 107 | 76 |
P value = 1.78e-05 (Chi-square test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
2Q GAIN MUTATED | 8 | 11 | 15 | 1 | 16 |
2Q GAIN WILD-TYPE | 151 | 22 | 47 | 11 | 69 |
P value = 1.51e-14 (Chi-square test), Q value = 1.2e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
5P GAIN MUTATED | 12 | 6 | 14 | 1 | 46 |
5P GAIN WILD-TYPE | 147 | 27 | 48 | 11 | 39 |
P value = 1.01e-05 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
5P GAIN MUTATED | 15 | 34 | 16 |
5P GAIN WILD-TYPE | 98 | 50 | 90 |
P value = 1.59e-06 (Chi-square test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
5P GAIN MUTATED | 10 | 5 | 7 | 8 | 29 |
5P GAIN WILD-TYPE | 55 | 57 | 39 | 29 | 33 |
P value = 2.65e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
5P GAIN MUTATED | 27 | 24 | 8 |
5P GAIN WILD-TYPE | 42 | 89 | 82 |
P value = 0.00011 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
5P GAIN MUTATED | 20 | 12 | 41 |
5P GAIN WILD-TYPE | 85 | 89 | 74 |
P value = 6.98e-06 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
5P GAIN MUTATED | 15 | 35 | 23 |
5P GAIN WILD-TYPE | 87 | 46 | 115 |
P value = 1.31e-06 (Fisher's exact test), Q value = 0.00095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
5P GAIN MUTATED | 29 | 22 | 8 |
5P GAIN WILD-TYPE | 35 | 107 | 73 |
P value = 1.68e-12 (Chi-square test), Q value = 1.3e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
6P GAIN MUTATED | 5 | 8 | 13 | 2 | 37 |
6P GAIN WILD-TYPE | 154 | 25 | 49 | 10 | 48 |
P value = 5.12e-09 (Fisher's exact test), Q value = 3.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
6P GAIN MUTATED | 13 | 33 | 6 |
6P GAIN WILD-TYPE | 100 | 51 | 100 |
P value = 7.36e-05 (Chi-square test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
6P GAIN MUTATED | 9 | 5 | 6 | 5 | 24 |
6P GAIN WILD-TYPE | 56 | 57 | 40 | 32 | 38 |
P value = 3.2e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
6P GAIN MUTATED | 24 | 19 | 6 |
6P GAIN WILD-TYPE | 45 | 94 | 84 |
P value = 5.5e-06 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
6P GAIN MUTATED | 17 | 6 | 36 |
6P GAIN WILD-TYPE | 88 | 95 | 79 |
P value = 9.35e-05 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
6P GAIN MUTATED | 10 | 28 | 21 |
6P GAIN WILD-TYPE | 92 | 53 | 117 |
P value = 6.83e-05 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
6P GAIN MUTATED | 7 | 35 | 4 |
6P GAIN WILD-TYPE | 57 | 96 | 75 |
P value = 1.38e-06 (Fisher's exact test), Q value = 0.00099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
6P GAIN MUTATED | 23 | 20 | 3 |
6P GAIN WILD-TYPE | 41 | 109 | 78 |
P value = 1e-10 (Chi-square test), Q value = 7.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
6Q GAIN MUTATED | 6 | 4 | 9 | 2 | 33 |
6Q GAIN WILD-TYPE | 153 | 29 | 53 | 10 | 52 |
P value = 1.36e-05 (Fisher's exact test), Q value = 0.0093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
6Q GAIN MUTATED | 12 | 25 | 6 |
6Q GAIN WILD-TYPE | 101 | 59 | 100 |
P value = 1.77e-05 (Chi-square test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
6Q GAIN MUTATED | 5 | 4 | 5 | 5 | 22 |
6Q GAIN WILD-TYPE | 60 | 58 | 41 | 32 | 40 |
P value = 0.00022 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
6Q GAIN MUTATED | 21 | 14 | 6 |
6Q GAIN WILD-TYPE | 48 | 99 | 84 |
P value = 2.45e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
6Q GAIN MUTATED | 13 | 5 | 31 |
6Q GAIN WILD-TYPE | 92 | 96 | 84 |
P value = 0.000189 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
6Q GAIN MUTATED | 4 | 30 | 4 |
6Q GAIN WILD-TYPE | 60 | 101 | 75 |
P value = 2.91e-05 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
6Q GAIN MUTATED | 18 | 18 | 2 |
6Q GAIN WILD-TYPE | 46 | 111 | 79 |
P value = 2.78e-11 (Chi-square test), Q value = 2.1e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
7P GAIN MUTATED | 40 | 29 | 33 | 7 | 46 |
7P GAIN WILD-TYPE | 119 | 4 | 29 | 5 | 39 |
P value = 4.83e-09 (Chi-square test), Q value = 3.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
7Q GAIN MUTATED | 39 | 28 | 27 | 6 | 34 |
7Q GAIN WILD-TYPE | 120 | 5 | 35 | 6 | 51 |
P value = 1.92e-05 (Chi-square test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
8P GAIN MUTATED | 70 | 19 | 17 | 12 | 30 |
8P GAIN WILD-TYPE | 89 | 14 | 45 | 0 | 55 |
P value = 4.67e-12 (Chi-square test), Q value = 3.6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
10P GAIN MUTATED | 11 | 9 | 31 | 1 | 32 |
10P GAIN WILD-TYPE | 148 | 24 | 31 | 11 | 53 |
P value = 1.67e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
10P GAIN MUTATED | 20 | 36 | 16 |
10P GAIN WILD-TYPE | 93 | 48 | 90 |
P value = 4.12e-10 (Chi-square test), Q value = 3.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
10Q GAIN MUTATED | 9 | 3 | 27 | 1 | 19 |
10Q GAIN WILD-TYPE | 150 | 30 | 35 | 11 | 66 |
P value = 0.000398 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
11Q GAIN MUTATED | 13 | 4 | 25 |
11Q GAIN WILD-TYPE | 92 | 97 | 90 |
P value = 8.41e-12 (Chi-square test), Q value = 6.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
13Q GAIN MUTATED | 32 | 25 | 14 | 4 | 46 |
13Q GAIN WILD-TYPE | 127 | 8 | 48 | 8 | 39 |
P value = 0.000223 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
13Q GAIN MUTATED | 35 | 36 | 20 |
13Q GAIN WILD-TYPE | 29 | 93 | 61 |
P value = 2.93e-05 (Chi-square test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
15Q GAIN MUTATED | 4 | 1 | 13 | 0 | 13 |
15Q GAIN WILD-TYPE | 155 | 32 | 49 | 12 | 72 |
P value = 2.57e-06 (Chi-square test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
18P GAIN MUTATED | 12 | 6 | 18 | 1 | 29 |
18P GAIN WILD-TYPE | 147 | 27 | 44 | 11 | 56 |
P value = 4.66e-06 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
18P GAIN MUTATED | 14 | 32 | 12 |
18P GAIN WILD-TYPE | 99 | 52 | 94 |
P value = 0.000126 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
18P GAIN MUTATED | 12 | 28 | 18 |
18P GAIN WILD-TYPE | 90 | 53 | 120 |
P value = 1.14e-12 (Chi-square test), Q value = 8.9e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
20P GAIN MUTATED | 52 | 28 | 45 | 8 | 61 |
20P GAIN WILD-TYPE | 107 | 5 | 17 | 4 | 24 |
P value = 6.57e-05 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
20P GAIN MUTATED | 55 | 63 | 49 |
20P GAIN WILD-TYPE | 58 | 21 | 57 |
P value = 5.98e-05 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
20P GAIN MUTATED | 43 | 60 | 72 |
20P GAIN WILD-TYPE | 59 | 21 | 66 |
P value = 0.000142 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
20P GAIN MUTATED | 49 | 60 | 39 |
20P GAIN WILD-TYPE | 15 | 69 | 42 |
P value = 1.86e-18 (Chi-square test), Q value = 1.5e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
20Q GAIN MUTATED | 59 | 31 | 52 | 9 | 72 |
20Q GAIN WILD-TYPE | 100 | 2 | 10 | 3 | 13 |
P value = 3.11e-09 (Fisher's exact test), Q value = 2.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
20Q GAIN MUTATED | 61 | 76 | 58 |
20Q GAIN WILD-TYPE | 52 | 8 | 48 |
P value = 1.84e-06 (Chi-square test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
20Q GAIN MUTATED | 30 | 31 | 27 | 24 | 56 |
20Q GAIN WILD-TYPE | 35 | 31 | 19 | 13 | 6 |
P value = 9.31e-05 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
20Q GAIN MUTATED | 57 | 64 | 47 |
20Q GAIN WILD-TYPE | 12 | 49 | 43 |
P value = 3.3e-06 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
20Q GAIN MUTATED | 57 | 53 | 93 |
20Q GAIN WILD-TYPE | 48 | 48 | 22 |
P value = 1.27e-09 (Fisher's exact test), Q value = 9.7e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
20Q GAIN MUTATED | 49 | 73 | 81 |
20Q GAIN WILD-TYPE | 53 | 8 | 57 |
P value = 2.97e-09 (Fisher's exact test), Q value = 2.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
20Q GAIN MUTATED | 60 | 74 | 41 |
20Q GAIN WILD-TYPE | 4 | 55 | 40 |
P value = 2.54e-05 (Chi-square test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
21Q GAIN MUTATED | 1 | 1 | 5 | 0 | 14 |
21Q GAIN WILD-TYPE | 158 | 32 | 57 | 12 | 71 |
P value = 0.000206 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
21Q GAIN MUTATED | 4 | 14 | 2 |
21Q GAIN WILD-TYPE | 109 | 70 | 104 |
P value = 0.000153 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
21Q GAIN MUTATED | 1 | 13 | 6 |
21Q GAIN WILD-TYPE | 101 | 68 | 132 |
P value = 3.84e-05 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
21Q GAIN MUTATED | 12 | 7 | 0 |
21Q GAIN WILD-TYPE | 52 | 122 | 81 |
P value = 1.35e-05 (Chi-square test), Q value = 0.0092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
XQ GAIN MUTATED | 8 | 9 | 4 | 4 | 18 |
XQ GAIN WILD-TYPE | 151 | 24 | 58 | 8 | 67 |
P value = 0.000149 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
XQ GAIN MUTATED | 13 | 20 | 4 |
XQ GAIN WILD-TYPE | 100 | 64 | 102 |
P value = 2.41e-06 (Chi-square test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
1P LOSS MUTATED | 4 | 5 | 14 | 1 | 21 |
1P LOSS WILD-TYPE | 155 | 28 | 48 | 11 | 64 |
P value = 6.22e-05 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
1P LOSS MUTATED | 11 | 23 | 6 |
1P LOSS WILD-TYPE | 102 | 61 | 100 |
P value = 0.000245 (Chi-square test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
1Q LOSS MUTATED | 1 | 0 | 8 | 1 | 10 |
1Q LOSS WILD-TYPE | 158 | 33 | 54 | 11 | 75 |
P value = 0.000211 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
1Q LOSS MUTATED | 5 | 13 | 1 |
1Q LOSS WILD-TYPE | 108 | 71 | 105 |
P value = 0.000202 (Chi-square test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
2Q LOSS MUTATED | 1 | 3 | 5 | 0 | 13 |
2Q LOSS WILD-TYPE | 158 | 30 | 57 | 12 | 72 |
P value = 8.32e-05 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
2Q LOSS MUTATED | 3 | 14 | 2 |
2Q LOSS WILD-TYPE | 110 | 70 | 104 |
P value = 5.94e-08 (Chi-square test), Q value = 4.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
3P LOSS MUTATED | 11 | 14 | 19 | 1 | 27 |
3P LOSS WILD-TYPE | 148 | 19 | 43 | 11 | 58 |
P value = 4.13e-07 (Chi-square test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
3Q LOSS MUTATED | 4 | 10 | 9 | 1 | 21 |
3Q LOSS WILD-TYPE | 155 | 23 | 53 | 11 | 64 |
P value = 7.5e-06 (Chi-square test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
3Q LOSS MUTATED | 2 | 3 | 1 | 6 | 17 |
3Q LOSS WILD-TYPE | 63 | 59 | 45 | 31 | 45 |
P value = 4.31e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
3Q LOSS MUTATED | 18 | 7 | 4 |
3Q LOSS WILD-TYPE | 51 | 106 | 86 |
P value = 4.7e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
3Q LOSS MUTATED | 3 | 10 | 25 |
3Q LOSS WILD-TYPE | 102 | 91 | 90 |
P value = 1.53e-16 (Chi-square test), Q value = 1.2e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
4P LOSS MUTATED | 21 | 15 | 41 | 3 | 50 |
4P LOSS WILD-TYPE | 138 | 18 | 21 | 9 | 35 |
P value = 3.29e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
4P LOSS MUTATED | 31 | 48 | 32 |
4P LOSS WILD-TYPE | 82 | 36 | 74 |
P value = 4.69e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
4P LOSS MUTATED | 24 | 33 | 59 |
4P LOSS WILD-TYPE | 81 | 68 | 56 |
P value = 6.01e-07 (Fisher's exact test), Q value = 0.00044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
4P LOSS MUTATED | 33 | 49 | 34 |
4P LOSS WILD-TYPE | 69 | 32 | 104 |
P value = 8.87e-06 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
4P LOSS MUTATED | 39 | 33 | 26 |
4P LOSS WILD-TYPE | 25 | 96 | 55 |
P value = 5.37e-18 (Chi-square test), Q value = 4.2e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
4Q LOSS MUTATED | 20 | 12 | 43 | 3 | 50 |
4Q LOSS WILD-TYPE | 139 | 21 | 19 | 9 | 35 |
P value = 4.35e-06 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
4Q LOSS MUTATED | 33 | 50 | 29 |
4Q LOSS WILD-TYPE | 80 | 34 | 77 |
P value = 0.000273 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
4Q LOSS MUTATED | 25 | 33 | 57 |
4Q LOSS WILD-TYPE | 80 | 68 | 58 |
P value = 2.93e-06 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
4Q LOSS MUTATED | 31 | 48 | 36 |
4Q LOSS WILD-TYPE | 71 | 33 | 102 |
P value = 2.23e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
4Q LOSS MUTATED | 39 | 35 | 26 |
4Q LOSS WILD-TYPE | 25 | 94 | 55 |
P value = 3.22e-06 (Chi-square test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
5P LOSS MUTATED | 4 | 8 | 14 | 4 | 16 |
5P LOSS WILD-TYPE | 155 | 25 | 48 | 8 | 69 |
P value = 1.37e-11 (Chi-square test), Q value = 1.1e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
5Q LOSS MUTATED | 6 | 11 | 20 | 4 | 35 |
5Q LOSS WILD-TYPE | 153 | 22 | 42 | 8 | 50 |
P value = 1.11e-07 (Fisher's exact test), Q value = 8.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
5Q LOSS MUTATED | 19 | 38 | 12 |
5Q LOSS WILD-TYPE | 94 | 46 | 94 |
P value = 2.34e-07 (Chi-square test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
5Q LOSS MUTATED | 11 | 3 | 5 | 7 | 28 |
5Q LOSS WILD-TYPE | 54 | 59 | 41 | 30 | 34 |
P value = 6.63e-06 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
5Q LOSS MUTATED | 27 | 20 | 7 |
5Q LOSS WILD-TYPE | 42 | 93 | 83 |
P value = 9.55e-07 (Fisher's exact test), Q value = 0.00069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
5Q LOSS MUTATED | 10 | 34 | 25 |
5Q LOSS WILD-TYPE | 92 | 47 | 113 |
P value = 9.77e-08 (Fisher's exact test), Q value = 7.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
5Q LOSS MUTATED | 32 | 22 | 9 |
5Q LOSS WILD-TYPE | 32 | 107 | 72 |
P value = 1.76e-07 (Chi-square test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
6P LOSS MUTATED | 4 | 3 | 18 | 0 | 16 |
6P LOSS WILD-TYPE | 155 | 30 | 44 | 12 | 69 |
P value = 1.6e-07 (Chi-square test), Q value = 0.00012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
6Q LOSS MUTATED | 8 | 5 | 22 | 0 | 18 |
6Q LOSS WILD-TYPE | 151 | 28 | 40 | 12 | 67 |
P value = 2.43e-05 (Chi-square test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
7Q LOSS MUTATED | 0 | 1 | 8 | 1 | 13 |
7Q LOSS WILD-TYPE | 159 | 32 | 54 | 11 | 72 |
P value = 1.74e-08 (Chi-square test), Q value = 1.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
8P LOSS MUTATED | 8 | 7 | 22 | 0 | 25 |
8P LOSS WILD-TYPE | 151 | 26 | 40 | 12 | 60 |
P value = 5.95e-21 (Chi-square test), Q value = 4.7e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
9P LOSS MUTATED | 13 | 11 | 46 | 3 | 40 |
9P LOSS WILD-TYPE | 146 | 22 | 16 | 9 | 45 |
P value = 1.76e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
9P LOSS MUTATED | 26 | 45 | 29 |
9P LOSS WILD-TYPE | 87 | 39 | 77 |
P value = 1.72e-08 (Chi-square test), Q value = 1.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
9P LOSS MUTATED | 6 | 13 | 19 | 9 | 36 |
9P LOSS WILD-TYPE | 59 | 49 | 27 | 28 | 26 |
P value = 5.88e-05 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
9P LOSS MUTATED | 36 | 25 | 22 |
9P LOSS WILD-TYPE | 33 | 88 | 68 |
P value = 0.000317 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
9P LOSS MUTATED | 21 | 27 | 51 |
9P LOSS WILD-TYPE | 84 | 74 | 64 |
P value = 8.3e-06 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
9P LOSS MUTATED | 29 | 42 | 28 |
9P LOSS WILD-TYPE | 73 | 39 | 110 |
P value = 4.06e-06 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
9P LOSS MUTATED | 37 | 32 | 18 |
9P LOSS WILD-TYPE | 27 | 97 | 63 |
P value = 2.37e-10 (Chi-square test), Q value = 1.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
9Q LOSS MUTATED | 11 | 8 | 30 | 2 | 27 |
9Q LOSS WILD-TYPE | 148 | 25 | 32 | 10 | 58 |
P value = 3.51e-05 (Chi-square test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
9Q LOSS MUTATED | 6 | 10 | 13 | 4 | 26 |
9Q LOSS WILD-TYPE | 59 | 52 | 33 | 33 | 36 |
P value = 0.000375 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
9Q LOSS MUTATED | 26 | 22 | 12 |
9Q LOSS WILD-TYPE | 38 | 107 | 69 |
P value = 9.96e-06 (Chi-square test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
10P LOSS MUTATED | 5 | 6 | 10 | 1 | 22 |
10P LOSS WILD-TYPE | 154 | 27 | 52 | 11 | 63 |
P value = 1.59e-08 (Chi-square test), Q value = 1.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
10Q LOSS MUTATED | 4 | 9 | 9 | 1 | 26 |
10Q LOSS WILD-TYPE | 155 | 24 | 53 | 11 | 59 |
P value = 2.45e-07 (Chi-square test), Q value = 0.00018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
11P LOSS MUTATED | 7 | 3 | 15 | 0 | 25 |
11P LOSS WILD-TYPE | 152 | 30 | 47 | 12 | 60 |
P value = 0.000309 (Chi-square test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
11Q LOSS MUTATED | 9 | 4 | 13 | 0 | 20 |
11Q LOSS WILD-TYPE | 150 | 29 | 49 | 12 | 65 |
P value = 5.29e-14 (Chi-square test), Q value = 4.1e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
12P LOSS MUTATED | 1 | 2 | 11 | 1 | 32 |
12P LOSS WILD-TYPE | 158 | 31 | 51 | 11 | 53 |
P value = 3.24e-10 (Fisher's exact test), Q value = 2.5e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
12P LOSS MUTATED | 3 | 28 | 6 |
12P LOSS WILD-TYPE | 110 | 56 | 100 |
P value = 1.92e-05 (Chi-square test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
12P LOSS MUTATED | 3 | 4 | 6 | 3 | 20 |
12P LOSS WILD-TYPE | 62 | 58 | 40 | 34 | 42 |
P value = 3.78e-05 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
12P LOSS MUTATED | 8 | 24 | 12 |
12P LOSS WILD-TYPE | 94 | 57 | 126 |
P value = 1.7e-07 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
12P LOSS MUTATED | 22 | 7 | 5 |
12P LOSS WILD-TYPE | 42 | 122 | 76 |
P value = 4.03e-10 (Chi-square test), Q value = 3.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
12Q LOSS MUTATED | 0 | 2 | 10 | 1 | 24 |
12Q LOSS WILD-TYPE | 159 | 31 | 52 | 11 | 61 |
P value = 2.19e-06 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
12Q LOSS MUTATED | 4 | 21 | 5 |
12Q LOSS WILD-TYPE | 109 | 63 | 101 |
P value = 7.08e-05 (Chi-square test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
13Q LOSS MUTATED | 8 | 0 | 15 | 1 | 7 |
13Q LOSS WILD-TYPE | 151 | 33 | 47 | 11 | 78 |
P value = 3.55e-09 (Chi-square test), Q value = 2.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
14Q LOSS MUTATED | 15 | 7 | 30 | 2 | 30 |
14Q LOSS WILD-TYPE | 144 | 26 | 32 | 10 | 55 |
P value = 2.93e-05 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
14Q LOSS MUTATED | 18 | 36 | 19 |
14Q LOSS WILD-TYPE | 95 | 48 | 87 |
P value = 0.00025 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
14Q LOSS MUTATED | 29 | 18 | 17 |
14Q LOSS WILD-TYPE | 40 | 95 | 73 |
P value = 2.08e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
14Q LOSS MUTATED | 30 | 22 | 14 |
14Q LOSS WILD-TYPE | 34 | 107 | 67 |
P value = 2.02e-08 (Chi-square test), Q value = 1.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
15Q LOSS MUTATED | 9 | 12 | 20 | 2 | 29 |
15Q LOSS WILD-TYPE | 150 | 21 | 42 | 10 | 56 |
P value = 7.74e-05 (Chi-square test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
15Q LOSS MUTATED | 8 | 4 | 9 | 4 | 23 |
15Q LOSS WILD-TYPE | 57 | 58 | 37 | 33 | 39 |
P value = 7.52e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
15Q LOSS MUTATED | 23 | 19 | 6 |
15Q LOSS WILD-TYPE | 46 | 94 | 84 |
P value = 0.000209 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
15Q LOSS MUTATED | 14 | 12 | 37 |
15Q LOSS WILD-TYPE | 91 | 89 | 78 |
P value = 1.25e-05 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
15Q LOSS MUTATED | 11 | 31 | 21 |
15Q LOSS WILD-TYPE | 91 | 50 | 117 |
P value = 9.84e-05 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
15Q LOSS MUTATED | 25 | 23 | 8 |
15Q LOSS WILD-TYPE | 39 | 106 | 73 |
P value = 3.13e-17 (Chi-square test), Q value = 2.5e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
16P LOSS MUTATED | 7 | 2 | 24 | 0 | 41 |
16P LOSS WILD-TYPE | 152 | 31 | 38 | 12 | 44 |
P value = 0.000101 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
16P LOSS MUTATED | 17 | 32 | 15 |
16P LOSS WILD-TYPE | 96 | 52 | 91 |
P value = 4.08e-10 (Chi-square test), Q value = 3.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
16P LOSS MUTATED | 7 | 5 | 5 | 4 | 31 |
16P LOSS WILD-TYPE | 58 | 57 | 41 | 33 | 31 |
P value = 5.3e-07 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
16P LOSS MUTATED | 29 | 15 | 8 |
16P LOSS WILD-TYPE | 40 | 98 | 82 |
P value = 1.71e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
16P LOSS MUTATED | 12 | 12 | 42 |
16P LOSS WILD-TYPE | 93 | 89 | 73 |
P value = 0.000183 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
16P LOSS MUTATED | 13 | 30 | 23 |
16P LOSS WILD-TYPE | 89 | 51 | 115 |
P value = 3.1e-06 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
16P LOSS MUTATED | 3 | 43 | 11 |
16P LOSS WILD-TYPE | 61 | 88 | 68 |
P value = 4.86e-06 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
16P LOSS MUTATED | 28 | 20 | 9 |
16P LOSS WILD-TYPE | 36 | 109 | 72 |
P value = 2.89e-16 (Chi-square test), Q value = 2.3e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
16Q LOSS MUTATED | 12 | 2 | 25 | 0 | 44 |
16Q LOSS WILD-TYPE | 147 | 31 | 37 | 12 | 41 |
P value = 1.02e-06 (Fisher's exact test), Q value = 0.00074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
16Q LOSS MUTATED | 12 | 36 | 23 |
16Q LOSS WILD-TYPE | 101 | 48 | 83 |
P value = 4.99e-08 (Chi-square test), Q value = 3.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
16Q LOSS MUTATED | 6 | 10 | 9 | 5 | 32 |
16Q LOSS WILD-TYPE | 59 | 52 | 37 | 32 | 30 |
P value = 8.21e-06 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
16Q LOSS MUTATED | 31 | 17 | 14 |
16Q LOSS WILD-TYPE | 38 | 96 | 76 |
P value = 1.96e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
16Q LOSS MUTATED | 14 | 17 | 44 |
16Q LOSS WILD-TYPE | 91 | 84 | 71 |
P value = 5.64e-05 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
16Q LOSS MUTATED | 16 | 34 | 25 |
16Q LOSS WILD-TYPE | 86 | 47 | 113 |
P value = 8.99e-06 (Fisher's exact test), Q value = 0.0062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
16Q LOSS MUTATED | 30 | 21 | 13 |
16Q LOSS WILD-TYPE | 34 | 108 | 68 |
P value = 1.7e-21 (Chi-square test), Q value = 1.3e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
17P LOSS MUTATED | 12 | 22 | 35 | 3 | 51 |
17P LOSS WILD-TYPE | 147 | 11 | 27 | 9 | 34 |
P value = 1.33e-11 (Fisher's exact test), Q value = 1e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
17P LOSS MUTATED | 34 | 55 | 18 |
17P LOSS WILD-TYPE | 79 | 29 | 88 |
P value = 4.44e-06 (Chi-square test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
17P LOSS MUTATED | 14 | 10 | 18 | 12 | 36 |
17P LOSS WILD-TYPE | 51 | 52 | 28 | 25 | 26 |
P value = 1.74e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
17P LOSS MUTATED | 40 | 32 | 18 |
17P LOSS WILD-TYPE | 29 | 81 | 72 |
P value = 0.000134 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
17P LOSS MUTATED | 33 | 22 | 56 |
17P LOSS WILD-TYPE | 72 | 79 | 59 |
P value = 1.38e-05 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
17P LOSS MUTATED | 23 | 45 | 43 |
17P LOSS WILD-TYPE | 79 | 36 | 95 |
P value = 4.59e-08 (Fisher's exact test), Q value = 3.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
17P LOSS MUTATED | 42 | 36 | 18 |
17P LOSS WILD-TYPE | 22 | 93 | 63 |
P value = 3.92e-08 (Chi-square test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
17Q LOSS MUTATED | 4 | 9 | 17 | 2 | 24 |
17Q LOSS WILD-TYPE | 155 | 24 | 45 | 10 | 61 |
P value = 7.46e-06 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
17Q LOSS MUTATED | 13 | 26 | 6 |
17Q LOSS WILD-TYPE | 100 | 58 | 100 |
P value = 0.000158 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
17Q LOSS MUTATED | 21 | 14 | 7 |
17Q LOSS WILD-TYPE | 43 | 115 | 74 |
P value = 0.000102 (Chi-square test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
18P LOSS MUTATED | 27 | 13 | 28 | 2 | 30 |
18P LOSS WILD-TYPE | 132 | 20 | 34 | 10 | 55 |
P value = 1.89e-09 (Chi-square test), Q value = 1.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
18Q LOSS MUTATED | 28 | 16 | 34 | 2 | 44 |
18Q LOSS WILD-TYPE | 131 | 17 | 28 | 10 | 41 |
P value = 2.38e-23 (Chi-square test), Q value = 1.9e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
19P LOSS MUTATED | 2 | 8 | 24 | 3 | 52 |
19P LOSS WILD-TYPE | 157 | 25 | 38 | 9 | 33 |
P value = 2.03e-12 (Fisher's exact test), Q value = 1.6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
19P LOSS MUTATED | 20 | 47 | 11 |
19P LOSS WILD-TYPE | 93 | 37 | 95 |
P value = 3.2e-12 (Chi-square test), Q value = 2.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
19P LOSS MUTATED | 8 | 3 | 8 | 5 | 35 |
19P LOSS WILD-TYPE | 57 | 59 | 38 | 32 | 27 |
P value = 8.83e-12 (Fisher's exact test), Q value = 6.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
19P LOSS MUTATED | 36 | 18 | 5 |
19P LOSS WILD-TYPE | 33 | 95 | 85 |
P value = 1.22e-06 (Fisher's exact test), Q value = 0.00089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
19P LOSS MUTATED | 17 | 13 | 47 |
19P LOSS WILD-TYPE | 88 | 88 | 68 |
P value = 1.13e-12 (Fisher's exact test), Q value = 8.8e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
19P LOSS MUTATED | 8 | 44 | 25 |
19P LOSS WILD-TYPE | 94 | 37 | 113 |
P value = 0.000368 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 131 | 79 |
19P LOSS MUTATED | 14 | 44 | 8 |
19P LOSS WILD-TYPE | 50 | 87 | 71 |
P value = 2.23e-10 (Fisher's exact test), Q value = 1.7e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
19P LOSS MUTATED | 35 | 25 | 6 |
19P LOSS WILD-TYPE | 29 | 104 | 75 |
P value = 1.31e-16 (Chi-square test), Q value = 1e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
19Q LOSS MUTATED | 1 | 7 | 18 | 3 | 40 |
19Q LOSS WILD-TYPE | 158 | 26 | 44 | 9 | 45 |
P value = 8.33e-10 (Fisher's exact test), Q value = 6.3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
19Q LOSS MUTATED | 14 | 37 | 8 |
19Q LOSS WILD-TYPE | 99 | 47 | 98 |
P value = 1.55e-07 (Chi-square test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
19Q LOSS MUTATED | 5 | 2 | 8 | 5 | 25 |
19Q LOSS WILD-TYPE | 60 | 60 | 38 | 32 | 37 |
P value = 2.43e-06 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
19Q LOSS MUTATED | 24 | 17 | 4 |
19Q LOSS WILD-TYPE | 45 | 96 | 86 |
P value = 3.42e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
19Q LOSS MUTATED | 13 | 10 | 37 |
19Q LOSS WILD-TYPE | 92 | 91 | 78 |
P value = 1.7e-09 (Fisher's exact test), Q value = 1.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
19Q LOSS MUTATED | 7 | 35 | 18 |
19Q LOSS WILD-TYPE | 95 | 46 | 120 |
P value = 5.02e-08 (Fisher's exact test), Q value = 3.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
19Q LOSS MUTATED | 28 | 18 | 5 |
19Q LOSS WILD-TYPE | 36 | 111 | 76 |
P value = 0.000249 (Chi-square test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 65 | 62 | 46 | 37 | 62 |
20P LOSS MUTATED | 0 | 2 | 8 | 0 | 3 |
20P LOSS WILD-TYPE | 65 | 60 | 38 | 37 | 59 |
P value = 1.56e-11 (Chi-square test), Q value = 1.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
21Q LOSS MUTATED | 27 | 16 | 40 | 6 | 43 |
21Q LOSS WILD-TYPE | 132 | 17 | 22 | 6 | 42 |
P value = 4.47e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 113 | 90 |
21Q LOSS MUTATED | 39 | 28 | 26 |
21Q LOSS WILD-TYPE | 30 | 85 | 64 |
P value = 3.02e-17 (Chi-square test), Q value = 2.4e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
22Q LOSS MUTATED | 13 | 11 | 38 | 4 | 45 |
22Q LOSS WILD-TYPE | 146 | 22 | 24 | 8 | 40 |
P value = 7.47e-06 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 113 | 84 | 106 |
22Q LOSS MUTATED | 30 | 45 | 23 |
22Q LOSS WILD-TYPE | 83 | 39 | 83 |
P value = 5.75e-06 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 101 | 115 |
22Q LOSS MUTATED | 17 | 27 | 53 |
22Q LOSS WILD-TYPE | 88 | 74 | 62 |
P value = 3.89e-08 (Fisher's exact test), Q value = 2.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 102 | 81 | 138 |
22Q LOSS MUTATED | 21 | 46 | 30 |
22Q LOSS WILD-TYPE | 81 | 35 | 108 |
P value = 1.34e-06 (Fisher's exact test), Q value = 0.00097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 64 | 129 | 81 |
22Q LOSS MUTATED | 37 | 29 | 18 |
22Q LOSS WILD-TYPE | 27 | 100 | 63 |
P value = 3.48e-07 (Chi-square test), Q value = 0.00025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 159 | 33 | 62 | 12 | 85 |
XQ LOSS MUTATED | 4 | 5 | 18 | 0 | 16 |
XQ LOSS WILD-TYPE | 155 | 28 | 44 | 12 | 69 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtypes file = STAD-TP.transferedmergedcluster.txt
-
Number of patients = 351
-
Number of significantly arm-level cnvs = 79
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.