Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_xq22.3	15 (3%)	479	1.3158e-05	0.00328	0.77068	1	0.83857	1	0.25012	1	0.76575	1	0.70263	1	1	1	0.81751	1	0.94579	1	0.72883	1
del_1q24.2	3 (1%)	491	0.00029964	0.0671	0.058497	1	NA	NA	NA	NA	0.095922	1	0.072069	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
del_2p23.1	12 (2%)	482	3.5784e-10	1.01e-07	1.2083e-05	0.00302	0.77299	1	0.012195	1	9.7466e-06	0.00249	5.2613e-06	0.00135	1.1267e-06	0.000301	1.29e-07	3.51e-05	3.125e-06	0.000816	1.4492e-07	3.91e-05
del_2q35	12 (2%)	482	3.429e-13	9.7e-11	1.5149e-06	0.000401	0.53812	1	0.0032652	0.604	9.7466e-06	0.00249	3.048e-07	8.17e-05	1.1267e-06	0.000301	1.29e-07	3.51e-05	3.125e-06	0.000816	1.4492e-07	3.91e-05
del_5p15.2	4 (1%)	490	0.34814	1	0.39424	1	NA	NA	NA	NA	0.41229	1	0.3629	1	0.5555	1	0.5777	1	0.47604	1	0.68438	1
del_6q22.31	7 (1%)	487	4.6185e-05	0.0113	0.0037975	0.699	0.01289	1	0.36417	1	0.032023	1	0.0090066	1	0.0031635	0.592	0.0019635	0.383	0.0095409	1	0.001992	0.384
del_7q34	4 (1%)	490	0.63996	1	0.64949	1	NA	NA	NA	NA	0.74058	1	0.65809	1	0.69066	1	0.8216	1	1	1	0.82784	1
del_8p23.2	4 (1%)	490	1.8918e-05	0.00469	0.014899	1	NA	NA	NA	NA	0.042882	1	0.015718	1	0.0083323	1	0.0046715	0.82	0.022746	1	0.0043874	0.795
del_8p22	4 (1%)	490	1.8918e-05	0.00469	0.014899	1	NA	NA	NA	NA	0.042882	1	0.015718	1	0.0083323	1	0.0046715	0.82	0.022746	1	0.0043874	0.795
del_8p12	4 (1%)	490	1.8918e-05	0.00469	0.014899	1	NA	NA	NA	NA	0.042882	1	0.015718	1	0.0083323	1	0.0046715	0.82	0.022746	1	0.0043874	0.795
del_8q24.22	7 (1%)	487	4.6185e-05	0.0113	0.00034264	0.0764	0.83857	1	0.052094	1	0.0016852	0.335	0.00022108	0.05	0.00021857	0.0498	7.8506e-05	0.0188	0.00075785	0.159	7.0248e-05	0.0169
del_9q21.13	24 (5%)	470	9.2259e-15	2.62e-12	0.048058	1	0.17314	1	0.0332	1	0.1063	1	0.020429	1	0.0091745	1	0.0067504	1	0.011718	1	0.0043674	0.795
del_10q21.2	12 (2%)	482	5.166e-05	0.0126	0.10768	1	0.1549	1	0.61974	1	0.01855	1	0.0026725	0.502	0.14089	1	0.038163	1	0.037481	1	0.058043	1
del_10q23.31	12 (2%)	482	2.5096e-06	0.00066	0.0042604	0.78	0.051924	1	0.023718	1	0.00064766	0.138	0.00038572	0.0841	0.0046578	0.82	0.0011071	0.224	0.00050754	0.11	0.00098134	0.2
del_11p15.1	7 (1%)	487	7.9811e-08	2.2e-05	0.0095599	1	0.49518	1	1	1	0.006746	1	0.0090066	1	0.0031635	0.592	0.0019635	0.383	0.0095409	1	0.001992	0.384
del_13q12.3	16 (3%)	478	0.006025	1	0.00098845	0.201	0.18334	1	0.25709	1	0.00065292	0.138	0.0092874	1	0.033514	1	0.0087672	1	0.012716	1	0.00614	1
del_13q21.31	18 (4%)	476	0.0054769	0.937	0.021519	1	0.053051	1	0.91295	1	0.0019251	0.377	0.00064164	0.137	0.0050437	0.868	0.0021283	0.404	0.0045028	0.801	0.0022885	0.433
del_15q25.3	9 (2%)	485	0.00014022	0.0331	0.0019883	0.384	0.24313	1	0.043324	1	0.0046239	0.818	0.00079531	0.165	0.00055826	0.12	0.00016433	0.0386	0.0016182	0.324	0.00017081	0.04
del_16q23.3	6 (1%)	488	0.048336	1	0.074356	1	0.4435	1	0.10153	1	0.28531	1	0.23874	1	0.19715	1	0.38708	1	0.29429	1	0.29336	1
del_17p13.1	8 (2%)	486	0.0018185	0.358	0.33489	1	1	1	0.28386	1	0.65218	1	0.45183	1	0.3301	1	0.3067	1	0.67242	1	0.28245	1
del_18p11.21	4 (1%)	490	0.00020688	0.0479	0.22031	1	1	1	0.28386	1	0.23687	1	0.089012	1	0.11474	1	0.03699	1	0.022746	1	0.04024	1
del_18q22.2	5 (1%)	489	0.001342	0.27	0.075718	1	1	1	0.25012	1	0.11571	1	0.02751	1	0.041522	1	0.011545	1	0.0073505	1	0.012716	1
del_19p13.2	7 (1%)	487	0.00065349	0.138	0.00034264	0.0764	0.85493	1	0.12606	1	0.0016852	0.335	0.00022108	0.05	0.00021857	0.0498	7.8506e-05	0.0188	0.00075785	0.159	7.0248e-05	0.0169
del_21q21.1	9 (2%)	485	5.665e-05	0.0137	0.48617	1	0.14755	1	0.20432	1	0.73859	1	0.72207	1	0.052632	1	0.26638	1	0.053681	1	0.04365	1
del_22q13.1	86 (17%)	408	7.4847e-90	2.16e-87	1.0961e-05	0.00277	0.12299	1	0.15013	1	3.3791e-09	9.46e-07	8.027e-08	2.21e-05	0.00095557	0.198	0.00034244	0.0764	3.1163e-06	0.000816	0.00020634	0.0479
del_22q13.2	86 (17%)	408	7.4847e-90	2.16e-87	1.0961e-05	0.00277	0.12299	1	0.15013	1	3.3791e-09	9.46e-07	8.027e-08	2.21e-05	0.00095557	0.198	0.00034244	0.0764	3.1163e-06	0.000816	0.00020634	0.0479
del_22q13.31	86 (17%)	408	7.4847e-90	2.16e-87	1.0961e-05	0.00277	0.12299	1	0.15013	1	3.3791e-09	9.46e-07	8.027e-08	2.21e-05	0.00095557	0.198	0.00034244	0.0764	3.1163e-06	0.000816	0.00020634	0.0479
del_22q13.32	87 (18%)	407	6.2211e-88	1.77e-85	5.4683e-06	0.0014	0.12299	1	0.15013	1	1.7521e-09	4.92e-07	3.9125e-08	1.08e-05	0.00054681	0.118	0.00017406	0.0406	1.5499e-06	0.000409	9.9414e-05	0.0236
del_xq22.1	6 (1%)	488	0.073625	1	0.5511	1	0.097671	1	0.11797	1	0.58995	1	0.64076	1	0.52551	1	0.29381	1	0.70256	1	0.34146	1
del_xq22.3	4 (1%)	490	0.05384	1	0.05941	1	0.27791	1	0.36437	1	0.092381	1	0.28946	1	0.11474	1	0.03699	1	0.2256	1	0.04024	1