		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	3 (1%)	491	0.25274	1	0.74542	1	NA	NA	NA	NA	0.55936	1	1	1	0.41269	1	0.62074	1	0.21567	1	0.48491	1
1q gain	24 (5%)	470	9.8111e-06	0.00451	0.028902	1	0.0011227	0.4	0.031927	1	0.00099292	0.36	5.0419e-05	0.0216	0.14644	1	0.052447	1	0.094115	1	0.02191	1
3p gain	3 (1%)	491	0.00029964	0.117	0.58225	1	NA	NA	NA	NA	0.48766	1	0.19527	1	0.20674	1	0.35468	1	0.32276	1	0.26956	1
4p gain	5 (1%)	489	1.1583e-06	0.000575	0.0058116	1	NA	NA	NA	NA	0.018091	1	0.0052859	1	0.026783	1	0.02148	1	0.068735	1	0.021643	1
4q gain	5 (1%)	489	1.1583e-06	0.000575	0.0058116	1	NA	NA	NA	NA	0.018091	1	0.0052859	1	0.026783	1	0.02148	1	0.068735	1	0.021643	1
5p gain	21 (4%)	473	4.1767e-23	2.22e-20	0.0009301	0.341	0.53006	1	0.096938	1	0.0070526	1	0.00048527	0.182	0.0041091	1	0.00052321	0.195	0.0011	0.396	0.00031043	0.12
5q gain	17 (3%)	477	1.7646e-22	9.35e-20	3.3891e-05	0.0147	0.84992	1	0.0074483	1	0.00034459	0.132	1.5613e-05	0.00709	0.00034409	0.132	4.1144e-05	0.0178	9.5987e-05	0.0395	3.178e-05	0.0139
7p gain	18 (4%)	476	6.2891e-24	3.35e-21	7.1865e-05	0.03	0.66044	1	0.0021938	0.746	0.00088045	0.324	6.17e-05	0.026	0.0010462	0.379	0.00012147	0.0498	0.00025857	0.102	7.6101e-05	0.0314
7q gain	20 (4%)	474	6.9205e-25	3.69e-22	9.8206e-06	0.00451	0.57088	1	0.0006759	0.249	0.00016626	0.067	7.8185e-06	0.00368	0.00014406	0.0585	1.1525e-05	0.00527	4.3818e-05	0.0189	9.0622e-06	0.00419
8p gain	6 (1%)	488	0.00036422	0.139	0.5511	1	0.45688	1	0.65505	1	0.62475	1	0.30115	1	0.52551	1	0.29381	1	0.33416	1	0.34146	1
8q gain	7 (1%)	487	4.6185e-05	0.0199	0.37788	1	0.45688	1	0.65505	1	0.86648	1	0.56103	1	0.79943	1	0.56094	1	0.31819	1	0.62917	1
9p gain	3 (1%)	491	0.0024627	0.83	0.58225	1	NA	NA	NA	NA	0.48766	1	0.19527	1	1	1	1	1	1	1	1	1
9q gain	4 (1%)	490	0.010127	1	0.64949	1	NA	NA	NA	NA	0.89733	1	0.10438	1	1	1	0.8216	1	1	1	0.82784	1
11p gain	6 (1%)	488	0.00019094	0.0764	0.026273	1	0.78004	1	0.28386	1	0.053041	1	0.010583	1	0.01458	1	0.0035052	1	0.0023653	0.801	0.0039224	1
11q gain	5 (1%)	489	1.6023e-05	0.00724	0.075718	1	0.78004	1	0.28386	1	0.11571	1	0.02751	1	0.041522	1	0.011545	1	0.0073505	1	0.012716	1
12p gain	14 (3%)	480	1.4838e-16	7.82e-14	3.7096e-06	0.00178	0.84992	1	0.0074483	1	1.5632e-05	0.00709	6.2564e-07	0.000315	6.0506e-05	0.0256	8.8631e-06	0.0041	9.6452e-06	0.00445	8.5246e-06	0.00396
12q gain	15 (3%)	479	2.1371e-16	1.12e-13	1.3215e-06	0.000645	0.84992	1	0.0074483	1	8.4367e-06	0.00395	1.5496e-07	7.87e-05	2.2412e-05	0.00988	2.8717e-06	0.00139	3.6316e-06	0.00175	2.6582e-06	0.00129
13q gain	5 (1%)	489	1.1583e-06	0.000575	0.017333	1	0.38382	1	0.052318	1	0.046024	1	0.019556	1	0.16894	1	0.13916	1	0.20984	1	0.14752	1
14q gain	11 (2%)	483	3.2261e-10	1.66e-07	0.00016135	0.0652	1	1	0.079008	1	0.00055689	0.207	6.2615e-05	0.0264	0.00046118	0.174	0.00015085	0.0611	0.0012288	0.434	0.00011394	0.0468
16p gain	15 (3%)	479	6.9406e-18	3.67e-15	1.8523e-05	0.0083	0.63317	1	0.010623	1	0.0001872	0.0751	8.236e-06	0.00386	0.00019179	0.0765	4.2488e-05	0.0184	3.0668e-05	0.0134	3.9555e-05	0.0172
16q gain	13 (3%)	481	6.4942e-17	3.43e-14	0.00012148	0.0498	0.79533	1	0.036322	1	0.0010456	0.379	7.5874e-05	0.0314	0.0017099	0.602	0.00038726	0.146	0.00018161	0.073	0.00033592	0.13
17p gain	16 (3%)	478	4.2311e-13	2.2e-10	5.6386e-07	0.000285	0.53812	1	0.0032652	1	4.0532e-06	0.00194	4.7168e-08	2.42e-05	8.06e-06	0.00379	8.9682e-07	0.00045	1.3337e-06	0.000649	8.0374e-07	0.000404
17q gain	18 (4%)	476	5.0269e-14	2.62e-11	1.1334e-06	0.000563	0.63317	1	0.0027126	0.906	1.4722e-05	0.0067	3.376e-07	0.000171	1.1689e-05	0.00533	1.46e-06	0.00071	3.6892e-06	0.00177	1.093e-06	0.000544
18p gain	6 (1%)	488	1.163e-06	0.000575	0.097294	1	NA	NA	NA	NA	0.10782	1	0.048947	1	0.25473	1	0.084071	1	0.025931	1	0.10653	1
18q gain	6 (1%)	488	1.163e-06	0.000575	0.097294	1	NA	NA	NA	NA	0.10782	1	0.048947	1	0.25473	1	0.084071	1	0.025931	1	0.10653	1
19p gain	8 (2%)	486	2.1851e-10	1.13e-07	0.00013927	0.0568	NA	NA	NA	NA	0.00058488	0.217	5.9641e-05	0.0253	6.4312e-05	0.027	1.9869e-05	0.0088	0.00024177	0.0955	1.749e-05	0.00787
19q gain	10 (2%)	484	1.9162e-11	9.93e-09	8.4402e-06	0.00395	0.63581	1	0.052318	1	7.3084e-05	0.0305	6.6558e-06	0.00315	5.4855e-06	0.00262	1.2495e-06	0.000613	2.4285e-05	0.0107	1.064e-06	0.000533
20p gain	12 (2%)	482	1.4228e-15	7.47e-13	0.00037642	0.143	0.79533	1	0.01926	1	0.0030007	0.993	0.0002602	0.102	0.0046578	1	0.0011071	0.397	0.00050754	0.19	0.00098134	0.358
20q gain	12 (2%)	482	1.4228e-15	7.47e-13	0.00037642	0.143	0.79533	1	0.01926	1	0.0030007	0.993	0.0002602	0.102	0.0046578	1	0.0011071	0.397	0.00050754	0.19	0.00098134	0.358
21q gain	5 (1%)	489	1.6023e-05	0.00724	0.24862	1	NA	NA	NA	NA	0.21677	1	0.11116	1	0.45083	1	0.22908	1	0.068735	1	0.31753	1
xq gain	9 (2%)	485	2.7025e-07	0.000137	0.021712	1	0.83857	1	0.25012	1	0.097584	1	0.041362	1	0.33715	1	0.20748	1	0.48314	1	0.19584	1
1p loss	4 (1%)	490	1.8918e-05	0.00846	0.22031	1	NA	NA	NA	NA	0.23687	1	0.089012	1	0.075512	1	0.067594	1	0.12891	1	0.094249	1
1q loss	3 (1%)	491	0.00029964	0.117	0.058497	1	NA	NA	NA	NA	0.095922	1	0.072069	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
2p loss	10 (2%)	484	1.9162e-11	9.93e-09	8.4402e-06	0.00395	0.77299	1	0.012195	1	7.3084e-05	0.0305	6.6558e-06	0.00315	5.4855e-06	0.00262	1.2495e-06	0.000613	2.4285e-05	0.0107	1.064e-06	0.000533
2q loss	10 (2%)	484	6.0257e-13	3.13e-10	8.4402e-06	0.00395	0.77299	1	0.012195	1	7.3084e-05	0.0305	6.6558e-06	0.00315	5.4855e-06	0.00262	1.2495e-06	0.000613	2.4285e-05	0.0107	1.064e-06	0.000533
3p loss	3 (1%)	491	0.00029964	0.117	0.058497	1	NA	NA	NA	NA	0.095922	1	0.072069	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
3q loss	4 (1%)	490	1.8918e-05	0.00846	0.014899	1	0.49518	1	0.36437	1	0.042882	1	0.015718	1	0.0083323	1	0.0046715	1	0.022746	1	0.0043874	1
6p loss	4 (1%)	490	0.0023635	0.801	0.05941	1	NA	NA	NA	NA	0.45362	1	0.28946	1	0.075512	1	0.067594	1	0.12891	1	0.094249	1
6q loss	7 (1%)	487	4.6185e-05	0.0199	0.0037975	1	0.01289	1	0.36417	1	0.032023	1	0.0090066	1	0.0031635	1	0.0019635	0.683	0.0095409	1	0.001992	0.683
8p loss	4 (1%)	490	1.8918e-05	0.00846	0.014899	1	NA	NA	NA	NA	0.042882	1	0.015718	1	0.0083323	1	0.0046715	1	0.022746	1	0.0043874	1
8q loss	4 (1%)	490	1.8918e-05	0.00846	0.014899	1	NA	NA	NA	NA	0.042882	1	0.015718	1	0.0083323	1	0.0046715	1	0.022746	1	0.0043874	1
9p loss	19 (4%)	475	2.9444e-12	1.53e-09	0.025786	1	0.24313	1	0.36757	1	0.031307	1	0.013762	1	0.006588	1	0.0030288	0.996	0.0096602	1	0.0018085	0.635
9q loss	24 (5%)	470	9.2259e-15	4.83e-12	0.048058	1	0.17314	1	0.0332	1	0.1063	1	0.020429	1	0.0091745	1	0.0067504	1	0.011718	1	0.0043674	1
10p loss	7 (1%)	487	3.9413e-09	2.02e-06	0.0095599	1	0.49518	1	0.36437	1	0.02113	1	0.0029409	0.976	0.0031635	1	0.0019635	0.683	0.0095409	1	0.001992	0.683
10q loss	6 (1%)	488	6.8691e-08	3.51e-05	0.026273	1	NA	NA	NA	NA	0.053041	1	0.010583	1	0.009288	1	0.0065835	1	0.025931	1	0.0066445	1
11p loss	7 (1%)	487	7.9811e-08	4.07e-05	0.0095599	1	0.49518	1	1	1	0.006746	1	0.0090066	1	0.0031635	1	0.0019635	0.683	0.0095409	1	0.001992	0.683
11q loss	9 (2%)	485	3.2751e-06	0.00158	0.01058	1	0.32096	1	0.79392	1	0.017554	1	0.0099439	1	0.0003518	0.134	0.0033576	1	0.00122	0.432	0.0027455	0.914
13q loss	14 (3%)	480	0.0084353	1	0.020025	1	0.061401	1	0.89312	1	0.0055091	1	0.0042985	1	0.0019868	0.683	0.0019654	0.683	0.0018664	0.651	0.0026083	0.874
15q loss	8 (2%)	486	5.6338e-05	0.0241	0.00013927	0.0568	0.1933	1	0.12606	1	0.00058488	0.217	5.9641e-05	0.0253	6.4312e-05	0.027	1.9869e-05	0.0088	0.00024177	0.0955	1.749e-05	0.00787
17p loss	8 (2%)	486	0.0018185	0.636	0.33489	1	1	1	0.28386	1	0.65218	1	0.45183	1	0.3301	1	0.3067	1	0.67242	1	0.28245	1
17q loss	4 (1%)	490	0.05384	1	0.64949	1	NA	NA	NA	NA	0.89733	1	0.62596	1	0.39922	1	0.68887	1	0.84679	1	0.57342	1
18p loss	4 (1%)	490	0.00020688	0.0821	0.22031	1	1	1	0.28386	1	0.23687	1	0.089012	1	0.11474	1	0.03699	1	0.022746	1	0.04024	1
18q loss	4 (1%)	490	0.00020688	0.0821	0.22031	1	1	1	0.28386	1	0.23687	1	0.089012	1	0.11474	1	0.03699	1	0.022746	1	0.04024	1
19p loss	5 (1%)	489	0.025058	1	0.0058116	1	0.32096	1	0.11797	1	0.018091	1	0.0052859	1	0.0024878	0.836	0.0012037	0.427	0.0073505	1	0.0011125	0.397
21q loss	8 (2%)	486	5.6338e-05	0.0241	0.22097	1	0.38382	1	0.052318	1	0.65218	1	0.50319	1	0.074415	1	0.3067	1	0.097418	1	0.064228	1
22q loss	86 (17%)	408	7.4847e-90	4e-87	1.0961e-05	0.00502	0.12299	1	0.15013	1	3.3791e-09	1.74e-06	8.027e-08	4.09e-05	0.00095557	0.35	0.00034244	0.132	3.1163e-06	0.00151	0.00020634	0.0821
xq loss	3 (1%)	491	0.021866	1	0.058497	1	0.27791	1	0.36437	1	0.095922	1	0.072069	1	0.027774	1	0.018024	1	0.070089	1	0.017199	1
