Broad GDAC Analyses Status
analyses__2014_07_15__blca Run for Tumor Type: BLCA

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
BLCA41221826611235202670267127130

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-Append_CustomClinical00010
4TP-CoMut1.500010
5TP-CoMut2.000010
6TP-CoMut2CV00010
7TP-CoMutCV00010
8TP-CopyNumber_Clustering_CNMF00010
9TP-CopyNumber_Clustering_CNMF_thresholded00010
10TP-CopyNumber_Gistic200010
11TP-CopyNumber_Gistic2_Postprocess_Focal00010
12TP-CopyNumberLowPass_Gistic200010
13TP-Correlate_Clinical_vs_CopyNumber_Arm00010
14TP-Correlate_Clinical_vs_CopyNumber_Focal00010
15TP-Correlate_Clinical_vs_Methylation00010
16TP-Correlate_Clinical_vs_miR10000
17TP-Correlate_Clinical_vs_miRseq00010
18TP-Correlate_Clinical_vs_Molecular_Subtypes00010
19TP-Correlate_Clinical_vs_mRNA10000
20TP-Correlate_Clinical_vs_mRNAseq00010
21TP-Correlate_Clinical_vs_Mutation00010
22TP-Correlate_Clinical_vs_MutationRate00010
23TP-Correlate_Clinical_vs_RPPA00010
24TP-Correlate_CopyNumber_vs_miR10000
25TP-Correlate_CopyNumber_vs_mRNA10000
26TP-Correlate_CopyNumber_vs_mRNAseq00010
27TP-Correlate_Methylation_vs_mRNA00010
28TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
29TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
30TP-Correlate_molecularSubtype_vs_Mutation00010
31TP-GenerateStickFigures1.500010
32TP-GenerateStickFigures2.000010
33TP-GenerateStickFigures2CV00010
34TP-GenerateStickFiguresCV00010
35TP-LegoPlotter1.500010
36TP-LegoPlotter2.000010
37TP-LegoPlotter2CV00010
38TP-LegoPlotterCV00010
39TP-Methylation_Clustering_CNMF00010
40TP-miR_Clustering_CNMF10000
41TP-miR_Clustering_Consensus_Plus10000
42TP-miR_FindDirectTargets10000
43TP-miRseq_Clustering_CNMF00010
44TP-miRseq_Clustering_Consensus_Plus00010
45TP-miRseq_Mature_Clustering_CNMF00010
46TP-miRseq_Mature_Clustering_Consensus_Plus00010
47TP-mRNA_Clustering_CNMF10000
48TP-mRNA_Clustering_Consensus_Plus10000
49TP-mRNAseq_Clustering_CNMF00010
50TP-mRNAseq_Clustering_Consensus_Plus00010
51TP-Mutation_Assessor00010
52TP-Mutation_CHASM00001
53TP-MutSigNozzleReport1.500010
54TP-MutSigNozzleReport2.000010
55TP-MutSigNozzleReport2CV00010
56TP-MutSigNozzleReportCV00010
57TP-MutSigPreprocess1.500010
58TP-MutSigPreprocess2.000010
59TP-MutSigRun1.500010
60TP-MutSigRun2.000010
61TP-MutSigRun2CV00010
62TP-MutSigRunCV00010
63TP-Paradigm_mRNA10000
64TP-Paradigm_mRNA_And_CopyNumber10000
65TP-Paradigm_Prepare_mRNA10000
66TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
67TP-Paradigm_Prepare_RNASeq00010
68TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
69TP-Paradigm_Preprocess_mRNA10000
70TP-ParadigmPreprocess_mRNA10000
71TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
72TP-Paradigm_Preprocess_RNASeq00010
73TP-ParadigmPreprocess_RNASeq00010
74TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
75TP-Paradigm_Report_Preprocess_mRNA10000
76TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
77TP-Paradigm_Report_Preprocess_RNASeq00010
78TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
79TP-Paradigm_RNASeq00010
80TP-Paradigm_RNASeq_And_Copy_Number00010
81TP-Pathway_FindEnrichedGenes10000
82TP-Pathway_Hotnet00001
83TP-Pathway_Paradigm_mRNA10000
84TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
85TP-Pathway_Paradigm_RNASeq00010
86TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
87TP-ProcessCoverageForMutSig1.500010
88TP-ProcessCoverageForMutSig2.000010
89TP-RPPA_Clustering_CNMF00010
90TP-RPPA_Clustering_Consensus_Plus00010
Total2100672

This table generated on Thu Sep 11 12:41:06 2014