Correlation between gene mutation status and molecular subtypes
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 142 genes and 8 molecular subtypes across 64 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

  • No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 142 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
ZFPM1 26 (41%) 38 0.181
(1.00) 		0.81
(1.00) 		0.335
(1.00) 		0.819
(1.00) 		0.68
(1.00) 		0.838
(1.00) 		0.492
(1.00) 		0.938
(1.00)
LACTB 20 (31%) 44 0.117
(1.00) 		0.682
(1.00) 		1
(1.00) 		0.56
(1.00) 		0.454
(1.00) 		0.743
(1.00) 		0.314
(1.00) 		0.756
(1.00)
CCDC102A 17 (27%) 47 0.131
(1.00) 		0.936
(1.00) 		0.911
(1.00) 		0.758
(1.00) 		0.439
(1.00) 		0.476
(1.00) 		0.687
(1.00) 		0.145
(1.00)
ZNF517 13 (20%) 51 0.652
(1.00) 		0.962
(1.00) 		0.884
(1.00) 		1
(1.00) 		0.236
(1.00) 		0.667
(1.00) 		0.799
(1.00) 		0.427
(1.00)
TOR3A 12 (19%) 52 0.273
(1.00) 		0.0221
(1.00) 		0.638
(1.00) 		0.0151
(1.00) 		1
(1.00) 		0.868
(1.00) 		0.828
(1.00) 		0.662
(1.00)
USP42 16 (25%) 48 0.725
(1.00) 		0.0487
(1.00) 		1
(1.00) 		0.96
(1.00) 		0.567
(1.00) 		0.839
(1.00) 		0.748
(1.00) 		0.289
(1.00)
CLDN23 10 (16%) 54 0.263
(1.00) 		0.247
(1.00) 		0.0237
(1.00) 		0.181
(1.00) 		0.0905
(1.00) 		0.19
(1.00) 		0.108
(1.00) 		0.322
(1.00)
TP53 13 (20%) 51 0.0216
(1.00) 		0.775
(1.00) 		0.0201
(1.00) 		0.666
(1.00) 		0.018
(1.00) 		0.638
(1.00) 		0.0416
(1.00) 		0.192
(1.00)
KCNK17 9 (14%) 55 0.103
(1.00) 		0.0379
(1.00) 		0.0944
(1.00) 		0.00996
(1.00) 		1
(1.00) 		0.522
(1.00) 		0.474
(1.00) 		0.417
(1.00)
LZTR1 6 (9%) 58 0.224
(1.00) 		0.806
(1.00) 		0.0894
(1.00) 		0.194
(1.00) 		0.417
(1.00) 		0.0137
(1.00) 		0.445
(1.00) 		0.0854
(1.00)
APOE 7 (11%) 57 0.17
(1.00) 		0.62
(1.00) 		0.0669
(1.00) 		0.453
(1.00) 		0.279
(1.00) 		0.822
(1.00) 		0.027
(1.00) 		0.825
(1.00)
CCDC105 7 (11%) 57 0.169
(1.00) 		0.00859
(1.00) 		0.881
(1.00) 		0.714
(1.00) 		1
(1.00) 		0.0509
(1.00) 		0.859
(1.00) 		0.326
(1.00)
RINL 8 (12%) 56 0.146
(1.00) 		0.701
(1.00) 		0.509
(1.00) 		0.294
(1.00) 		0.882
(1.00) 		0.166
(1.00) 		0.438
(1.00) 		0.187
(1.00)
MAL2 12 (19%) 52 0.782
(1.00) 		0.303
(1.00) 		0.199
(1.00) 		0.518
(1.00) 		0.123
(1.00) 		0.277
(1.00) 		0.644
(1.00) 		0.321
(1.00)
LRIG1 17 (27%) 47 0.654
(1.00) 		0.894
(1.00) 		1
(1.00) 		0.781
(1.00) 		0.186
(1.00) 		0.496
(1.00) 		0.696
(1.00) 		0.874
(1.00)
C19ORF10 8 (12%) 56 0.633
(1.00) 		0.355
(1.00) 		0.235
(1.00) 		0.109
(1.00) 		0.55
(1.00) 		0.86
(1.00) 		0.287
(1.00) 		0.761
(1.00)
C10ORF95 7 (11%) 57 0.172
(1.00) 		0.707
(1.00) 		0.557
(1.00) 		0.817
(1.00) 		0.75
(1.00) 		0.491
(1.00) 		0.862
(1.00) 		0.505
(1.00)
SYT8 9 (14%) 55 0.428
(1.00) 		0.403
(1.00) 		0.0346
(1.00) 		0.147
(1.00) 		1
(1.00) 		0.216
(1.00) 		1
(1.00) 		0.643
(1.00)
IDUA 9 (14%) 55 0.545
(1.00) 		0.894
(1.00) 		0.345
(1.00) 		0.54
(1.00) 		0.122
(1.00) 		0.457
(1.00) 		0.196
(1.00) 		0.483
(1.00)
HHIPL1 8 (12%) 56 0.126
(1.00) 		0.285
(1.00) 		0.358
(1.00) 		0.204
(1.00) 		0.176
(1.00) 		0.786
(1.00) 		0.289
(1.00) 		0.201
(1.00)
ASPDH 8 (12%) 56 0.306
(1.00) 		0.644
(1.00) 		0.0203
(1.00) 		0.344
(1.00) 		0.476
(1.00) 		0.0277
(1.00) 		0.368
(1.00) 		0.0793
(1.00)
C1ORF106 9 (14%) 55 0.77
(1.00) 		0.434
(1.00) 		0.343
(1.00) 		0.861
(1.00) 		0.478
(1.00) 		0.689
(1.00) 		0.616
(1.00) 		1
(1.00)
THEM4 6 (9%) 58 0.00358
(1.00) 		0.734
(1.00) 		0.437
(1.00) 		0.886
(1.00) 		0.245
(1.00) 		0.0938
(1.00) 		0.25
(1.00) 		0.111
(1.00)
CTNNB1 7 (11%) 57 1
(1.00) 		0.167
(1.00) 		0.0194
(1.00) 		0.0181
(1.00) 		0.00174
(1.00) 		0.169
(1.00) 		0.0272
(1.00) 		0.48
(1.00)
GDF1 5 (8%) 59 0.396
(1.00) 		0.312
(1.00) 		0.362
(1.00) 		0.254
(1.00) 		0.0896
(1.00) 		0.54
(1.00) 		0.0192
(1.00) 		0.713
(1.00)
TSC22D2 8 (12%) 56 0.349
(1.00) 		0.528
(1.00) 		0.815
(1.00) 		0.942
(1.00) 		0.883
(1.00) 		0.426
(1.00) 		1
(1.00) 		0.334
(1.00)
ZAR1 11 (17%) 53 0.175
(1.00) 		0.667
(1.00) 		0.602
(1.00) 		0.802
(1.00) 		0.72
(1.00) 		1
(1.00) 		0.52
(1.00) 		0.715
(1.00)
RGS9BP 8 (12%) 56 0.295
(1.00) 		0.585
(1.00) 		1
(1.00) 		0.888
(1.00) 		0.335
(1.00) 		0.962
(1.00) 		0.884
(1.00) 		0.343
(1.00)
OPRD1 12 (19%) 52 0.824
(1.00) 		0.388
(1.00) 		0.797
(1.00) 		0.961
(1.00) 		0.34
(1.00) 		0.631
(1.00) 		0.469
(1.00) 		0.466
(1.00)
C16ORF3 6 (9%) 58 0.904
(1.00) 		0.00079
(0.784) 		0.799
(1.00) 		0.831
(1.00) 		0.594
(1.00) 		1
(1.00) 		0.698
(1.00) 		0.711
(1.00)
FPGS 6 (9%) 58 1
(1.00) 		1
(1.00) 		0.614
(1.00) 		0.614
(1.00) 		0.0905
(1.00) 		0.624
(1.00) 		0.675
(1.00) 		0.787
(1.00)
PLIN5 5 (8%) 59 0.561
(1.00) 		0.693
(1.00) 		0.799
(1.00) 		0.542
(1.00) 		0.35
(1.00) 		0.308
(1.00) 		0.129
(1.00) 		0.321
(1.00)
IRX3 5 (8%) 59 0.333
(1.00) 		0.733
(1.00) 		0.52
(1.00) 		0.193
(1.00) 		0.246
(1.00) 		0.779
(1.00) 		0.25
(1.00) 		0.0204
(1.00)
TRIOBP 12 (19%) 52 0.821
(1.00) 		0.176
(1.00) 		1
(1.00) 		0.128
(1.00) 		0.902
(1.00) 		0.93
(1.00) 		0.665
(1.00) 		0.746
(1.00)
KRTAP4-5 5 (8%) 59 0.769
(1.00) 		0.313
(1.00) 		1
(1.00) 		0.886
(1.00) 		1
(1.00) 		0.84
(1.00) 		1
(1.00) 		0.894
(1.00)
ATXN1 10 (16%) 54 0.408
(1.00) 		0.129
(1.00) 		0.234
(1.00) 		0.627
(1.00) 		0.324
(1.00) 		0.852
(1.00) 		0.41
(1.00) 		0.851
(1.00)
ZNF628 7 (11%) 57 0.305
(1.00) 		0.892
(1.00) 		0.351
(1.00) 		0.122
(1.00) 		0.125
(1.00) 		0.494
(1.00) 		0.0953
(1.00) 		0.725
(1.00)
WDR34 5 (8%) 59 0.674
(1.00) 		0.772
(1.00) 		0.931
(1.00) 		0.834
(1.00) 		0.843
(1.00) 		0.523
(1.00) 		1
(1.00) 		0.396
(1.00)
BTBD11 6 (9%) 58 1
(1.00) 		0.235
(1.00) 		0.48
(1.00) 		1
(1.00) 		0.493
(1.00) 		0.165
(1.00) 		0.491
(1.00) 		0.213
(1.00)
GARS 21 (33%) 43 0.236
(1.00) 		0.0685
(1.00) 		0.433
(1.00) 		0.063
(1.00) 		0.238
(1.00) 		0.339
(1.00) 		0.0989
(1.00) 		0.342
(1.00)
ZNF598 13 (20%) 51 0.446
(1.00) 		0.377
(1.00) 		0.534
(1.00) 		1
(1.00) 		1
(1.00) 		0.215
(1.00) 		1
(1.00) 		0.162
(1.00)
BHLHE22 5 (8%) 59 0.391
(1.00) 		0.0641
(1.00) 		0.104
(1.00) 		0.83
(1.00) 		0.595
(1.00) 		0.881
(1.00) 		0.698
(1.00) 		0.785
(1.00)
PTPLA 4 (6%) 60 0.441
(1.00) 		0.292
(1.00) 		0.332
(1.00) 		0.474
(1.00) 		0.79
(1.00) 		1
(1.00) 		0.21
(1.00) 		0.583
(1.00)
CD320 4 (6%) 60 0.935
(1.00) 		0.897
(1.00) 		0.737
(1.00) 		0.684
(1.00) 		0.416
(1.00) 		0.221
(1.00) 		0.175
(1.00) 		0.173
(1.00)
KIAA1984 4 (6%) 60 0.252
(1.00) 		0.735
(1.00) 		0.126
(1.00) 		0.0463
(1.00) 		0.0364
(1.00) 		0.58
(1.00) 		0.0617
(1.00) 		0.669
(1.00)
TPO 12 (19%) 52 0.532
(1.00) 		0.305
(1.00) 		0.214
(1.00) 		0.159
(1.00) 		0.14
(1.00) 		0.319
(1.00) 		0.28
(1.00) 		0.122
(1.00)
AATK 6 (9%) 58 0.115
(1.00) 		0.316
(1.00) 		0.36
(1.00) 		0.251
(1.00) 		1
(1.00) 		0.506
(1.00) 		1
(1.00) 		0.455
(1.00)
PANK2 5 (8%) 59 0.735
(1.00) 		0.428
(1.00) 		0.114
(1.00) 		0.108
(1.00) 		0.441
(1.00) 		0.342
(1.00) 		0.594
(1.00) 		0.323
(1.00)
SNED1 6 (9%) 58 0.394
(1.00) 		0.594
(1.00) 		0.212
(1.00) 		0.455
(1.00) 		0.0442
(1.00) 		0.649
(1.00) 		0.0459
(1.00) 		0.321
(1.00)
CCDC150 4 (6%) 60 0.441
(1.00) 		0.808
(1.00) 		0.265
(1.00) 		0.197
(1.00) 		0.417
(1.00) 		0.182
(1.00) 		0.442
(1.00) 		0.143
(1.00)
ERCC2 10 (16%) 54 0.756
(1.00) 		0.196
(1.00) 		0.51
(1.00) 		0.149
(1.00) 		0.671
(1.00) 		0.239
(1.00) 		0.29
(1.00) 		0.0884
(1.00)
RREB1 5 (8%) 59 0.736
(1.00) 		0.807
(1.00) 		0.612
(1.00) 		1
(1.00) 		0.675
(1.00) 		0.504
(1.00) 		0.675
(1.00) 		0.554
(1.00)
RNF39 5 (8%) 59 0.427
(1.00) 		0.311
(1.00) 		0.184
(1.00) 		0.267
(1.00) 		0.167
(1.00) 		0.695
(1.00) 		0.351
(1.00) 		0.553
(1.00)
SEMA5B 8 (12%) 56 0.39
(1.00) 		0.35
(1.00) 		0.399
(1.00) 		0.274
(1.00) 		0.853
(1.00) 		0.337
(1.00) 		0.637
(1.00) 		0.666
(1.00)
TAF5 4 (6%) 60 0.937
(1.00) 		0.733
(1.00) 		1
(1.00) 		0.884
(1.00) 		0.0212
(1.00) 		0.121
(1.00) 		0.0195
(1.00) 		0.197
(1.00)
SARM1 7 (11%) 57 0.0301
(1.00) 		0.435
(1.00) 		0.275
(1.00) 		0.0285
(1.00) 		0.113
(1.00) 		0.754
(1.00) 		0.046
(1.00) 		0.917
(1.00)
PRSS27 3 (5%) 61 0.797
(1.00) 		0.909
(1.00) 		0.609
(1.00) 		0.108
(1.00) 		0.141
(1.00) 		1
(1.00) 		0.206
(1.00) 		1
(1.00)
TMEM189 4 (6%) 60 0.162
(1.00)
NOXA1 5 (8%) 59 0.15
(1.00) 		0.426
(1.00) 		0.219
(1.00) 		0.476
(1.00) 		0.302
(1.00) 		0.341
(1.00) 		0.314
(1.00) 		0.328
(1.00)
LRP11 7 (11%) 57 0.0406
(1.00) 		0.0727
(1.00) 		0.799
(1.00) 		0.541
(1.00) 		0.593
(1.00) 		0.936
(1.00) 		0.695
(1.00) 		0.95
(1.00)
RNF149 4 (6%) 60 0.376
(1.00) 		0.0356
(1.00) 		0.36
(1.00) 		0.616
(1.00) 		0.329
(1.00) 		0.353
(1.00) 		0.343
(1.00) 		0.444
(1.00)
DMKN 3 (5%) 61 0.801
(1.00) 		0.292
(1.00) 		0.611
(1.00) 		0.474
(1.00) 		0.00831
(1.00) 		0.56
(1.00) 		0.0101
(1.00) 		0.823
(1.00)
FANK1 4 (6%) 60 0.936
(1.00) 		0.35
(1.00) 		0.855
(1.00) 		0.328
(1.00) 		0.79
(1.00) 		0.227
(1.00) 		1
(1.00) 		0.172
(1.00)
MUC5B 22 (34%) 42 1
(1.00) 		0.572
(1.00) 		0.676
(1.00) 		0.731
(1.00) 		0.817
(1.00) 		0.631
(1.00) 		0.591
(1.00) 		0.846
(1.00)
PABPC1 4 (6%) 60 0.415
(1.00)
GLTPD2 6 (9%) 58 0.0714
(1.00) 		0.844
(1.00) 		0.883
(1.00) 		0.453
(1.00) 		0.553
(1.00) 		0.51
(1.00) 		0.858
(1.00) 		0.597
(1.00)
MEN1 5 (8%) 59 0.0955
(1.00) 		0.0433
(1.00) 		0.0127
(1.00) 		0.00613
(1.00) 		0.215
(1.00) 		0.0387
(1.00) 		0.351
(1.00) 		0.00889
(1.00)
SRPX 3 (5%) 61 0.894
(1.00) 		0.125
(1.00) 		0.468
(1.00) 		1
(1.00) 		0.789
(1.00) 		0.789
(1.00) 		1
(1.00) 		0.822
(1.00)
MAP1S 5 (8%) 59 0.276
(1.00) 		0.384
(1.00) 		0.349
(1.00) 		1
(1.00) 		1
(1.00) 		0.882
(1.00) 		0.842
(1.00) 		1
(1.00)
SCRT1 3 (5%) 61 0.799
(1.00) 		0.425
(1.00) 		0.609
(1.00) 		0.639
(1.00) 		0.441
(1.00) 		0.71
(1.00) 		0.592
(1.00) 		0.875
(1.00)
OBSCN 20 (31%) 44 0.657
(1.00) 		0.261
(1.00) 		0.458
(1.00) 		0.624
(1.00) 		0.0945
(1.00) 		0.78
(1.00) 		0.196
(1.00) 		0.73
(1.00)
IER5 3 (5%) 61 0.369
(1.00)
TNIP2 5 (8%) 59 0.673
(1.00) 		0.625
(1.00) 		0.735
(1.00) 		0.887
(1.00) 		1
(1.00) 		0.402
(1.00) 		1
(1.00) 		0.235
(1.00)
NOTCH2 7 (11%) 57 0.304
(1.00) 		0.798
(1.00) 		0.35
(1.00) 		0.0338
(1.00) 		0.00835
(1.00) 		0.417
(1.00) 		0.00893
(1.00) 		0.325
(1.00)
RASIP1 7 (11%) 57 0.63
(1.00) 		0.676
(1.00) 		0.0391
(1.00) 		0.159
(1.00) 		0.022
(1.00) 		0.686
(1.00) 		0.0377
(1.00) 		0.748
(1.00)
NMU 5 (8%) 59 0.821
(1.00) 		1
(1.00) 		0.0485
(1.00) 		0.639
(1.00) 		1
(1.00) 		0.506
(1.00) 		1
(1.00) 		0.455
(1.00)
VARS 6 (9%) 58 0.445
(1.00) 		0.437
(1.00) 		0.185
(1.00) 		0.0818
(1.00) 		0.854
(1.00) 		0.861
(1.00) 		0.34
(1.00) 		0.762
(1.00)
SHOX2 3 (5%) 61 0.334
(1.00)
HSD17B1 4 (6%) 60 1
(1.00) 		0.108
(1.00) 		1
(1.00) 		0.0127
(1.00) 		1
(1.00) 		0.84
(1.00) 		1
(1.00) 		0.762
(1.00)
COQ2 5 (8%) 59 0.296
(1.00) 		0.765
(1.00) 		0.361
(1.00) 		0.616
(1.00) 		1
(1.00) 		0.669
(1.00) 		1
(1.00) 		0.762
(1.00)
KNDC1 10 (16%) 54 0.785
(1.00) 		0.129
(1.00) 		0.141
(1.00) 		0.372
(1.00) 		0.288
(1.00) 		0.357
(1.00) 		0.228
(1.00) 		0.749
(1.00)
AR 4 (6%) 60 0.32
(1.00) 		0.426
(1.00) 		0.61
(1.00) 		0.472
(1.00) 		0.445
(1.00) 		1
(1.00) 		0.596
(1.00) 		1
(1.00)
KCTD3 4 (6%) 60 0.414
(1.00)
FZD1 3 (5%) 61 0.407
(1.00)
ZC3H12D 3 (5%) 61 0.0033
(1.00)
KRTAP5-5 5 (8%) 59 0.362
(1.00) 		1
(1.00) 		0.219
(1.00) 		0.216
(1.00) 		0.444
(1.00) 		0.18
(1.00) 		0.593
(1.00) 		0.056
(1.00)
AKAP2 4 (6%) 60 0.0745
(1.00) 		0.475
(1.00) 		0.738
(1.00) 		0.316
(1.00) 		0.673
(1.00) 		0.468
(1.00) 		0.341
(1.00) 		0.647
(1.00)
KBTBD13 9 (14%) 55 0.584
(1.00) 		0.107
(1.00) 		0.734
(1.00) 		0.135
(1.00) 		1
(1.00) 		0.358
(1.00) 		1
(1.00) 		0.78
(1.00)
SPIRE2 3 (5%) 61 0.302
(1.00) 		0.0267
(1.00) 		1
(1.00) 		0.824
(1.00) 		1
(1.00) 		0.708
(1.00) 		1
(1.00) 		0.875
(1.00)
NPTX1 3 (5%) 61 0.337
(1.00) 		1
(1.00) 		1
(1.00) 		0.825
(1.00) 		0.587
(1.00) 		0.708
(1.00) 		0.43
(1.00) 		0.657
(1.00)
ADAD2 4 (6%) 60 0.251
(1.00) 		0.574
(1.00) 		0.738
(1.00) 		0.317
(1.00) 		0.0206
(1.00) 		0.54
(1.00) 		0.0196
(1.00) 		0.837
(1.00)
SEZ6L2 8 (12%) 56 0.355
(1.00) 		0.598
(1.00) 		0.882
(1.00) 		1
(1.00) 		0.459
(1.00) 		0.584
(1.00) 		0.456
(1.00) 		0.808
(1.00)
NEFH 7 (11%) 57 0.0362
(1.00) 		0.157
(1.00) 		0.0236
(1.00) 		0.00825
(1.00) 		0.168
(1.00) 		0.521
(1.00) 		0.35
(1.00) 		0.158
(1.00)
DLEU7 3 (5%) 61 0.568
(1.00)
AMDHD1 11 (17%) 53 0.0266
(1.00) 		0.721
(1.00) 		0.569
(1.00) 		0.185
(1.00) 		0.236
(1.00) 		0.888
(1.00) 		0.0625
(1.00) 		0.954
(1.00)
GLTSCR2 5 (8%) 59 0.22
(1.00) 		0.806
(1.00) 		0.264
(1.00) 		0.197
(1.00) 		1
(1.00) 		0.623
(1.00) 		0.251
(1.00) 		0.589
(1.00)
PLEC 13 (20%) 51 0.612
(1.00) 		0.713
(1.00) 		0.194
(1.00) 		0.681
(1.00) 		0.673
(1.00) 		0.604
(1.00) 		0.396
(1.00) 		0.471
(1.00)
MAP7 3 (5%) 61 1
(1.00) 		0.697
(1.00) 		1
(1.00) 		0.825
(1.00) 		0.588
(1.00) 		0.708
(1.00) 		0.429
(1.00) 		0.655
(1.00)
DSPP 10 (16%) 54 0.928
(1.00) 		0.064
(1.00) 		1
(1.00) 		0.516
(1.00) 		0.515
(1.00) 		0.574
(1.00) 		0.313
(1.00) 		0.33
(1.00)
CRIPAK 10 (16%) 54 0.201
(1.00) 		0.928
(1.00) 		0.474
(1.00) 		0.836
(1.00) 		0.807
(1.00) 		0.359
(1.00) 		0.719
(1.00) 		0.287
(1.00)
PRKAR1A 6 (9%) 58 0.487
(1.00) 		1
(1.00) 		0.277
(1.00) 		0.457
(1.00) 		0.0865
(1.00) 		0.564
(1.00) 		0.174
(1.00) 		0.151
(1.00)
CYP4A22 4 (6%) 60 0.113
(1.00) 		0.622
(1.00) 		0.163
(1.00) 		0.507
(1.00) 		0.246
(1.00) 		0.207
(1.00) 		0.249
(1.00) 		0.837
(1.00)
NOM1 6 (9%) 58 1
(1.00) 		0.233
(1.00) 		0.93
(1.00) 		1
(1.00) 		1
(1.00) 		0.742
(1.00) 		0.84
(1.00) 		0.276
(1.00)
RNF135 3 (5%) 61 0.894
(1.00)
C12ORF65 3 (5%) 61 0.371
(1.00) 		0.0354
(1.00) 		0.113
(1.00) 		0.0623
(1.00) 		0.445
(1.00) 		0.563
(1.00) 		0.593
(1.00) 		0.735
(1.00)
HLA-B 6 (9%) 58 0.293
(1.00) 		0.775
(1.00) 		0.883
(1.00) 		1
(1.00) 		0.653
(1.00) 		0.274
(1.00) 		0.535
(1.00) 		0.319
(1.00)
CSGALNACT2 3 (5%) 61 0.895
(1.00) 		0.0256
(1.00) 		0.691
(1.00) 		0.823
(1.00) 		0.584
(1.00) 		0.876
(1.00) 		0.43
(1.00) 		0.933
(1.00)
UQCRFS1 5 (8%) 59 0.508
(1.00) 		0.502
(1.00) 		1
(1.00) 		0.885
(1.00) 		0.49
(1.00) 		0.187
(1.00) 		0.494
(1.00) 		0.0508
(1.00)
PDCD6 3 (5%) 61 0.302
(1.00) 		0.699
(1.00) 		1
(1.00) 		0.632
(1.00) 		1
(1.00) 		0.696
(1.00)
PTX4 3 (5%) 61 0.568
(1.00) 		1
(1.00) 		0.612
(1.00) 		0.217
(1.00) 		0.444
(1.00) 		1
(1.00) 		0.595
(1.00) 		0.392
(1.00)
SGK223 3 (5%) 61 0.895
(1.00)
POLRMT 4 (6%) 60 0.508
(1.00) 		0.0363
(1.00) 		0.327
(1.00) 		0.0737
(1.00) 		0.189
(1.00) 		0.353
(1.00) 		0.125
(1.00) 		0.443
(1.00)
CACNA1D 3 (5%) 61 0.566
(1.00)
NF1 7 (11%) 57 0.152
(1.00) 		0.904
(1.00) 		0.41
(1.00) 		0.268
(1.00) 		0.342
(1.00) 		0.853
(1.00) 		0.0999
(1.00) 		0.527
(1.00)
RGMB 6 (9%) 58 0.581
(1.00)
ADAMTS7 4 (6%) 60 0.14
(1.00) 		0.575
(1.00) 		0.0732
(1.00) 		0.465
(1.00) 		0.061
(1.00) 		0.351
(1.00) 		0.038
(1.00) 		0.288
(1.00)
CLIC6 6 (9%) 58 0.962
(1.00) 		1
(1.00) 		0.665
(1.00) 		0.193
(1.00) 		0.246
(1.00) 		0.579
(1.00) 		0.248
(1.00) 		0.759
(1.00)
EMR2 4 (6%) 60 0.375
(1.00) 		0.314
(1.00) 		0.473
(1.00) 		0.614
(1.00) 		0.674
(1.00) 		0.207
(1.00) 		0.676
(1.00) 		0.839
(1.00)
PCDHB13 5 (8%) 59 0.513
(1.00) 		0.139
(1.00) 		0.107
(1.00) 		0.256
(1.00) 		0.542
(1.00) 		0.0566
(1.00) 		0.801
(1.00) 		0.0126
(1.00)
MTFMT 3 (5%) 61 1
(1.00)
SPTAN1 3 (5%) 61 0.244
(1.00)
HLA-A 3 (5%) 61 1
(1.00) 		1
(1.00) 		0.854
(1.00) 		0.219
(1.00) 		1
(1.00) 		0.445
(1.00) 		1
(1.00) 		0.215
(1.00)
ASB16 6 (9%) 58 0.743
(1.00) 		0.945
(1.00) 		0.614
(1.00) 		0.885
(1.00) 		0.543
(1.00) 		0.778
(1.00) 		0.802
(1.00) 		0.959
(1.00)
GPRIN2 9 (14%) 55 0.591
(1.00) 		0.37
(1.00) 		0.65
(1.00) 		0.428
(1.00) 		0.582
(1.00) 		0.801
(1.00) 		0.381
(1.00) 		0.647
(1.00)
HNRNPCL1 3 (5%) 61 0.336
(1.00)
BTNL9 4 (6%) 60 0.416
(1.00) 		0.0962
(1.00) 		0.141
(1.00) 		0.0618
(1.00) 		0.142
(1.00) 		1
(1.00) 		0.209
(1.00) 		1
(1.00)
KCNJ11 4 (6%) 60 0.0135
(1.00) 		0.624
(1.00) 		0.434
(1.00) 		0.14
(1.00) 		0.132
(1.00) 		0.0498
(1.00) 		0.174
(1.00) 		0.211
(1.00)
JMJD4 3 (5%) 61 0.8
(1.00)
LRRC4B 6 (9%) 58 0.188
(1.00) 		0.189
(1.00) 		0.0133
(1.00) 		0.0708
(1.00) 		0.174
(1.00) 		0.0299
(1.00) 		0.172
(1.00) 		0.00974
(1.00)
OPLAH 3 (5%) 61 0.566
(1.00) 		0.854
(1.00) 		0.608
(1.00) 		0.472
(1.00) 		0.443
(1.00) 		0.342
(1.00) 		0.594
(1.00) 		0.394
(1.00)
BAGE2 3 (5%) 61 0.895
(1.00)
MADCAM1 3 (5%) 61 0.481
(1.00) 		0.696
(1.00) 		1
(1.00) 		0.199
(1.00) 		1
(1.00) 		0.136
(1.00)
CTBP2 3 (5%) 61 0.895
(1.00)
MSH3 4 (6%) 60 0.0176
(1.00) 		0.7
(1.00) 		0.335
(1.00) 		1
(1.00) 		0.3
(1.00) 		0.442
(1.00) 		0.314
(1.00) 		0.495
(1.00)
ATN1 4 (6%) 60 0.13
(1.00) 		0.853
(1.00) 		0.855
(1.00) 		1
(1.00) 		0.791
(1.00) 		0.79
(1.00) 		1
(1.00) 		0.823
(1.00)
FAM46A 3 (5%) 61 0.897
(1.00)
UTS2R 3 (5%) 61 0.162
(1.00) 		0.699
(1.00) 		0.69
(1.00) 		0.824
(1.00) 		0.586
(1.00) 		0.791
(1.00) 		0.428
(1.00) 		0.823
(1.00)
SMG1 3 (5%) 61 0.164
(1.00) 		0.125
(1.00) 		0.143
(1.00) 		0.0621
(1.00) 		0.305
(1.00) 		0.0256
(1.00) 		0.316
(1.00) 		0.188
(1.00)
FUCA1 3 (5%) 61 0.404
(1.00)
FEZ2 3 (5%) 61 0.477
(1.00) 		0.348
(1.00) 		0.179
(1.00) 		0.825
(1.00) 		0.209
(1.00) 		0.709
(1.00) 		0.133
(1.00) 		0.658
(1.00)
GLI3 5 (8%) 59 0.737
(1.00) 		0.407
(1.00) 		1
(1.00) 		0.885
(1.00) 		0.134
(1.00) 		0.399
(1.00) 		0.176
(1.00) 		0.0919
(1.00)
NOL9 4 (6%) 60 0.00202
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00) 		0.789
(1.00) 		0.559
(1.00) 		1
(1.00) 		0.733
(1.00)
'ZFPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZFPM1 MUTATED 10 7 2 6 1
ZFPM1 WILD-TYPE 11 12 6 2 5
'ZFPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZFPM1 MUTATED 6 4 4 6 2
ZFPM1 WILD-TYPE 7 4 10 8 5
'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZFPM1 MUTATED 8 1 7 6
ZFPM1 WILD-TYPE 9 7 7 10
'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZFPM1 MUTATED 8 6 2 6
ZFPM1 WILD-TYPE 8 10 3 12
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZFPM1 MUTATED 10 6 6
ZFPM1 WILD-TYPE 16 6 12
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZFPM1 MUTATED 5 9 2 5 1
ZFPM1 WILD-TYPE 8 10 6 9 1
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZFPM1 MUTATED 10 7 5
ZFPM1 WILD-TYPE 17 6 11
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZFPM1 MUTATED 4 7 2 5 3 1
ZFPM1 WILD-TYPE 5 10 5 7 3 4
'LACTB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S9.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LACTB MUTATED 5 5 2 6 2
LACTB WILD-TYPE 16 14 6 2 4
'LACTB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S10.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LACTB MUTATED 2 3 5 4 3
LACTB WILD-TYPE 11 5 9 10 4
'LACTB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LACTB MUTATED 5 2 5 5
LACTB WILD-TYPE 12 6 9 11
'LACTB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LACTB MUTATED 4 5 3 5
LACTB WILD-TYPE 12 11 2 13
'LACTB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LACTB MUTATED 6 5 6
LACTB WILD-TYPE 20 7 12
'LACTB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LACTB MUTATED 4 5 4 4 0
LACTB WILD-TYPE 9 14 4 10 2
'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LACTB MUTATED 6 6 5
LACTB WILD-TYPE 21 7 11
'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LACTB MUTATED 3 4 2 3 2 3
LACTB WILD-TYPE 6 13 5 9 4 2
'CCDC102A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S17.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CCDC102A MUTATED 4 7 0 3 3
CCDC102A WILD-TYPE 17 12 8 5 3
'CCDC102A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S18.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CCDC102A MUTATED 3 2 4 4 3
CCDC102A WILD-TYPE 10 6 10 10 4
'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S19.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CCDC102A MUTATED 4 3 4 5
CCDC102A WILD-TYPE 13 5 10 11
'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S20.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CCDC102A MUTATED 4 4 1 7
CCDC102A WILD-TYPE 12 12 4 11
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CCDC102A MUTATED 7 2 7
CCDC102A WILD-TYPE 19 10 11
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CCDC102A MUTATED 2 6 4 4 0
CCDC102A WILD-TYPE 11 13 4 10 2
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CCDC102A MUTATED 7 3 6
CCDC102A WILD-TYPE 20 10 10
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CCDC102A MUTATED 0 6 3 3 1 3
CCDC102A WILD-TYPE 9 11 4 9 5 2
'ZNF517 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S25.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZNF517 MUTATED 5 5 0 2 1
ZNF517 WILD-TYPE 16 14 8 6 5
'ZNF517 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S26.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZNF517 MUTATED 3 1 2 2 1
ZNF517 WILD-TYPE 10 7 12 12 6
'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S27.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZNF517 MUTATED 4 1 2 2
ZNF517 WILD-TYPE 13 7 12 14
'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S28.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZNF517 MUTATED 3 2 1 3
ZNF517 WILD-TYPE 13 14 4 15
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S29.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZNF517 MUTATED 3 4 2
ZNF517 WILD-TYPE 23 8 16
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S30.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZNF517 MUTATED 1 3 1 4 0
ZNF517 WILD-TYPE 12 16 7 10 2
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZNF517 MUTATED 4 3 2
ZNF517 WILD-TYPE 23 10 14
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZNF517 MUTATED 0 2 1 4 1 1
ZNF517 WILD-TYPE 9 15 6 8 5 4
'TOR3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S33.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TOR3A MUTATED 5 3 0 3 0
TOR3A WILD-TYPE 16 16 8 5 6
'TOR3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 1

Table S34.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TOR3A MUTATED 0 0 4 6 1
TOR3A WILD-TYPE 13 8 10 8 6

Figure S1.  Get High-res Image Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TOR3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S35.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TOR3A MUTATED 2 1 4 4
TOR3A WILD-TYPE 15 7 10 12
'TOR3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 1

Table S36.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TOR3A MUTATED 0 3 3 5
TOR3A WILD-TYPE 16 13 2 13

Figure S2.  Get High-res Image Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TOR3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S37.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TOR3A MUTATED 5 2 4
TOR3A WILD-TYPE 21 10 14
'TOR3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S38.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TOR3A MUTATED 2 5 2 2 0
TOR3A WILD-TYPE 11 14 6 12 2
'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S39.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TOR3A MUTATED 5 2 4
TOR3A WILD-TYPE 22 11 12
'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S40.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TOR3A MUTATED 2 4 2 1 2 0
TOR3A WILD-TYPE 7 13 5 11 4 5
'USP42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S41.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
USP42 MUTATED 5 4 2 2 3
USP42 WILD-TYPE 16 15 6 6 3
'USP42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S42.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
USP42 MUTATED 2 4 0 3 2
USP42 WILD-TYPE 11 4 14 11 5

Figure S3.  Get High-res Image Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S43.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
USP42 MUTATED 3 2 3 3
USP42 WILD-TYPE 14 6 11 13
'USP42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S44.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
USP42 MUTATED 3 4 1 3
USP42 WILD-TYPE 13 12 4 15
'USP42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S45.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
USP42 MUTATED 6 3 2
USP42 WILD-TYPE 20 9 16
'USP42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S46.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
USP42 MUTATED 2 3 2 4 0
USP42 WILD-TYPE 11 16 6 10 2
'USP42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S47.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
USP42 MUTATED 6 3 2
USP42 WILD-TYPE 21 10 14
'USP42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S48.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
USP42 MUTATED 1 3 3 4 0 0
USP42 WILD-TYPE 8 14 4 8 6 5
'CLDN23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S49.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CLDN23 MUTATED 2 5 1 0 2
CLDN23 WILD-TYPE 19 14 7 8 4
'CLDN23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S50.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CLDN23 MUTATED 1 2 1 3 3
CLDN23 WILD-TYPE 12 6 13 11 4
'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 1

Table S51.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CLDN23 MUTATED 1 1 1 7
CLDN23 WILD-TYPE 16 7 13 9

Figure S4.  Get High-res Image Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S52.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CLDN23 MUTATED 3 1 0 6
CLDN23 WILD-TYPE 13 15 5 12
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 1

Table S53.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CLDN23 MUTATED 2 2 6
CLDN23 WILD-TYPE 24 10 12
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S54.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CLDN23 MUTATED 1 4 3 1 1
CLDN23 WILD-TYPE 12 15 5 13 1
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S55.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CLDN23 MUTATED 2 3 5
CLDN23 WILD-TYPE 25 10 11
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S56.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CLDN23 MUTATED 0 4 2 1 1 2
CLDN23 WILD-TYPE 9 13 5 11 5 3
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 1

Table S57.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TP53 MUTATED 4 1 2 5 1
TP53 WILD-TYPE 17 18 6 3 5

Figure S5.  Get High-res Image Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S58.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TP53 MUTATED 2 3 3 2 1
TP53 WILD-TYPE 11 5 11 12 6
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 1

Table S59.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TP53 MUTATED 3 2 6 0
TP53 WILD-TYPE 14 6 8 16

Figure S6.  Get High-res Image Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S60.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TP53 MUTATED 4 4 1 2
TP53 WILD-TYPE 12 12 4 16
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 1

Table S61.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TP53 MUTATED 7 4 0
TP53 WILD-TYPE 19 8 18

Figure S7.  Get High-res Image Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S62.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TP53 MUTATED 4 2 2 3 0
TP53 WILD-TYPE 9 17 6 11 2
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S63.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TP53 MUTATED 7 4 0
TP53 WILD-TYPE 20 9 16

Figure S8.  Get High-res Image Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S64.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TP53 MUTATED 3 1 3 3 1 0
TP53 WILD-TYPE 6 16 4 9 5 5
'KCNK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S65.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KCNK17 MUTATED 2 1 1 3 2
KCNK17 WILD-TYPE 19 18 7 5 4
'KCNK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S66.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KCNK17 MUTATED 0 2 5 1 0
KCNK17 WILD-TYPE 13 6 9 13 7

Figure S9.  Get High-res Image Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 1

Table S67.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KCNK17 MUTATED 1 1 5 1
KCNK17 WILD-TYPE 16 7 9 15
'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00996 (Fisher's exact test), Q value = 1

Table S68.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KCNK17 MUTATED 0 6 1 1
KCNK17 WILD-TYPE 16 10 4 17

Figure S10.  Get High-res Image Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S69.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KCNK17 MUTATED 4 2 2
KCNK17 WILD-TYPE 22 10 16
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S70.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KCNK17 MUTATED 3 1 2 2 0
KCNK17 WILD-TYPE 10 18 6 12 2
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S71.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KCNK17 MUTATED 4 3 1
KCNK17 WILD-TYPE 23 10 15
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S72.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KCNK17 MUTATED 3 1 1 2 0 1
KCNK17 WILD-TYPE 6 16 6 10 6 4
'LZTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S73.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LZTR1 MUTATED 4 0 1 1 0
LZTR1 WILD-TYPE 17 19 7 7 6
'LZTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S74.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LZTR1 MUTATED 2 0 1 1 0
LZTR1 WILD-TYPE 11 8 13 13 7
'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0894 (Fisher's exact test), Q value = 1

Table S75.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LZTR1 MUTATED 3 1 0 0
LZTR1 WILD-TYPE 14 7 14 16
'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S76.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LZTR1 MUTATED 2 1 1 0
LZTR1 WILD-TYPE 14 15 4 18
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S77.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LZTR1 MUTATED 3 1 0
LZTR1 WILD-TYPE 23 11 18
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 1

Table S78.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LZTR1 MUTATED 0 0 0 3 1
LZTR1 WILD-TYPE 13 19 8 11 1

Figure S11.  Get High-res Image Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S79.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LZTR1 MUTATED 3 1 0
LZTR1 WILD-TYPE 24 12 16
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 1

Table S80.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LZTR1 MUTATED 0 0 0 3 1 0
LZTR1 WILD-TYPE 9 17 7 9 5 5
'APOE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S81.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
APOE MUTATED 1 2 1 3 0
APOE WILD-TYPE 20 17 7 5 6
'APOE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S82.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
APOE MUTATED 1 0 3 2 0
APOE WILD-TYPE 12 8 11 12 7
'APOE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 1

Table S83.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
APOE MUTATED 2 0 4 0
APOE WILD-TYPE 15 8 10 16
'APOE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S84.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
APOE MUTATED 1 3 1 1
APOE WILD-TYPE 15 13 4 17
'APOE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S85.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
APOE MUTATED 2 3 1
APOE WILD-TYPE 24 9 17
'APOE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S86.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
APOE MUTATED 1 3 0 2 0
APOE WILD-TYPE 12 16 8 12 2
'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S87.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
APOE MUTATED 2 4 0
APOE WILD-TYPE 25 9 16

Figure S12.  Get High-res Image Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S88.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
APOE MUTATED 0 2 1 2 1 0
APOE WILD-TYPE 9 15 6 10 5 5
'CCDC105 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S89.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CCDC105 MUTATED 1 2 1 3 0
CCDC105 WILD-TYPE 20 17 7 5 6
'CCDC105 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00859 (Fisher's exact test), Q value = 1

Table S90.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CCDC105 MUTATED 1 3 0 0 2
CCDC105 WILD-TYPE 12 5 14 14 5

Figure S13.  Get High-res Image Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S91.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CCDC105 MUTATED 1 1 2 2
CCDC105 WILD-TYPE 16 7 12 14
'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S92.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CCDC105 MUTATED 3 1 0 2
CCDC105 WILD-TYPE 13 15 5 16
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S93.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CCDC105 MUTATED 3 1 2
CCDC105 WILD-TYPE 23 11 16
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S94.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CCDC105 MUTATED 1 0 2 2 1
CCDC105 WILD-TYPE 12 19 6 12 1
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S95.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CCDC105 MUTATED 3 2 1
CCDC105 WILD-TYPE 24 11 15
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S96.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CCDC105 MUTATED 1 0 1 2 1 1
CCDC105 WILD-TYPE 8 17 6 10 5 4
'RINL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S97.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RINL MUTATED 6 1 0 1 0
RINL WILD-TYPE 15 18 8 7 6
'RINL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S98.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RINL MUTATED 3 1 1 2 0
RINL WILD-TYPE 10 7 13 12 7
'RINL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S99.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RINL MUTATED 4 1 1 1
RINL WILD-TYPE 13 7 13 15
'RINL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S100.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RINL MUTATED 4 1 1 1
RINL WILD-TYPE 12 15 4 17
'RINL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S101.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RINL MUTATED 3 2 2
RINL WILD-TYPE 23 10 16
'RINL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S102.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RINL MUTATED 0 3 0 4 0
RINL WILD-TYPE 13 16 8 10 2
'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S103.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RINL MUTATED 3 3 1
RINL WILD-TYPE 24 10 15
'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S104.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RINL MUTATED 0 3 0 4 0 0
RINL WILD-TYPE 9 14 7 8 6 5
'MAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S105.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MAL2 MUTATED 4 5 2 1 0
MAL2 WILD-TYPE 17 14 6 7 6
'MAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S106.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MAL2 MUTATED 3 2 0 3 1
MAL2 WILD-TYPE 10 6 14 11 6
'MAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S107.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MAL2 MUTATED 4 2 0 3
MAL2 WILD-TYPE 13 6 14 13
'MAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S108.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MAL2 MUTATED 4 1 1 3
MAL2 WILD-TYPE 12 15 4 15
'MAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S109.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MAL2 MUTATED 2 4 3
MAL2 WILD-TYPE 24 8 15
'MAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S110.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MAL2 MUTATED 0 4 1 4 0
MAL2 WILD-TYPE 13 15 7 10 2
'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S111.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MAL2 MUTATED 3 3 3
MAL2 WILD-TYPE 24 10 13
'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S112.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MAL2 MUTATED 0 3 0 4 1 1
MAL2 WILD-TYPE 9 14 7 8 5 4
'LRIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S113.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LRIG1 MUTATED 5 4 3 2 3
LRIG1 WILD-TYPE 16 15 5 6 3
'LRIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S114.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LRIG1 MUTATED 3 2 2 4 1
LRIG1 WILD-TYPE 10 6 12 10 6
'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S115.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LRIG1 MUTATED 3 2 3 3
LRIG1 WILD-TYPE 14 6 11 13
'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S116.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LRIG1 MUTATED 3 2 1 5
LRIG1 WILD-TYPE 13 14 4 13
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S117.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LRIG1 MUTATED 4 5 3
LRIG1 WILD-TYPE 22 7 15
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S118.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LRIG1 MUTATED 1 4 3 4 0
LRIG1 WILD-TYPE 12 15 5 10 2
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S119.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LRIG1 MUTATED 5 4 3
LRIG1 WILD-TYPE 22 9 13
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S120.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LRIG1 MUTATED 1 3 2 4 1 1
LRIG1 WILD-TYPE 8 14 5 8 5 4
'C19ORF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S121.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C19ORF10 MUTATED 3 2 0 2 0
C19ORF10 WILD-TYPE 18 17 8 6 6
'C19ORF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S122.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C19ORF10 MUTATED 2 1 3 0 0
C19ORF10 WILD-TYPE 11 7 11 14 7
'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S123.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C19ORF10 MUTATED 2 2 2 0
C19ORF10 WILD-TYPE 15 6 12 16
'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S124.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C19ORF10 MUTATED 2 4 0 0
C19ORF10 WILD-TYPE 14 12 5 18
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S125.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C19ORF10 MUTATED 3 2 1
C19ORF10 WILD-TYPE 23 10 17
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S126.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C19ORF10 MUTATED 2 2 0 2 0
C19ORF10 WILD-TYPE 11 17 8 12 2
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S127.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C19ORF10 MUTATED 4 2 0
C19ORF10 WILD-TYPE 23 11 16
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S128.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C19ORF10 MUTATED 2 2 0 2 0 0
C19ORF10 WILD-TYPE 7 15 7 10 6 5
'C10ORF95 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S129.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C10ORF95 MUTATED 2 0 2 1 1
C10ORF95 WILD-TYPE 19 19 6 7 5
'C10ORF95 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S130.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C10ORF95 MUTATED 1 0 3 1 1
C10ORF95 WILD-TYPE 12 8 11 13 6
'C10ORF95 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S131.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C10ORF95 MUTATED 2 2 1 1
C10ORF95 WILD-TYPE 15 6 13 15
'C10ORF95 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S132.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C10ORF95 MUTATED 1 2 1 2
C10ORF95 WILD-TYPE 15 14 4 16
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S133.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C10ORF95 MUTATED 4 1 1
C10ORF95 WILD-TYPE 22 11 17
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S134.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C10ORF95 MUTATED 1 2 1 1 1
C10ORF95 WILD-TYPE 12 17 7 13 1
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S135.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C10ORF95 MUTATED 4 1 1
C10ORF95 WILD-TYPE 23 12 15
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S136.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C10ORF95 MUTATED 1 1 1 1 2 0
C10ORF95 WILD-TYPE 8 16 6 11 4 5
'SYT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S137.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SYT8 MUTATED 1 4 2 1 1
SYT8 WILD-TYPE 20 15 6 7 5
'SYT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S138.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SYT8 MUTATED 0 2 2 1 1
SYT8 WILD-TYPE 13 6 12 13 6
'SYT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 1

Table S139.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SYT8 MUTATED 0 3 1 2
SYT8 WILD-TYPE 17 5 13 14

Figure S14.  Get High-res Image Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SYT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S140.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SYT8 MUTATED 0 4 0 2
SYT8 WILD-TYPE 16 12 5 16
'SYT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S141.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SYT8 MUTATED 3 1 2
SYT8 WILD-TYPE 23 11 16
'SYT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S142.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SYT8 MUTATED 1 3 1 0 1
SYT8 WILD-TYPE 12 16 7 14 1
'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S143.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SYT8 MUTATED 3 1 2
SYT8 WILD-TYPE 24 12 14
'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S144.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SYT8 MUTATED 1 3 1 0 1 0
SYT8 WILD-TYPE 8 14 6 12 5 5
'IDUA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S145.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
IDUA MUTATED 4 1 1 2 1
IDUA WILD-TYPE 17 18 7 6 5
'IDUA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S146.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
IDUA MUTATED 2 1 3 2 0
IDUA WILD-TYPE 11 7 11 12 7
'IDUA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S147.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
IDUA MUTATED 4 2 1 1
IDUA WILD-TYPE 13 6 13 15
'IDUA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S148.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
IDUA MUTATED 3 3 1 1
IDUA WILD-TYPE 13 13 4 17
'IDUA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S149.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
IDUA MUTATED 3 4 1
IDUA WILD-TYPE 23 8 17
'IDUA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S150.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
IDUA MUTATED 1 3 0 4 0
IDUA WILD-TYPE 12 16 8 10 2
'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S151.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
IDUA MUTATED 3 4 1
IDUA WILD-TYPE 24 9 15
'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S152.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
IDUA MUTATED 1 2 0 3 2 0
IDUA WILD-TYPE 8 15 7 9 4 5
'HHIPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S153.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HHIPL1 MUTATED 4 1 0 3 0
HHIPL1 WILD-TYPE 17 18 8 5 6
'HHIPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S154.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
HHIPL1 MUTATED 2 0 0 3 1
HHIPL1 WILD-TYPE 11 8 14 11 6
'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S155.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
HHIPL1 MUTATED 4 0 1 1
HHIPL1 WILD-TYPE 13 8 13 15
'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S156.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
HHIPL1 MUTATED 2 1 2 1
HHIPL1 WILD-TYPE 14 15 3 17
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S157.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
HHIPL1 MUTATED 4 2 0
HHIPL1 WILD-TYPE 22 10 18
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S158.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
HHIPL1 MUTATED 2 1 1 2 0
HHIPL1 WILD-TYPE 11 18 7 12 2
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S159.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
HHIPL1 MUTATED 4 2 0
HHIPL1 WILD-TYPE 23 11 16
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S160.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
HHIPL1 MUTATED 1 0 2 2 1 0
HHIPL1 WILD-TYPE 8 17 5 10 5 5
'ASPDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S161.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ASPDH MUTATED 2 2 1 3 0
ASPDH WILD-TYPE 19 17 7 5 6
'ASPDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S162.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ASPDH MUTATED 3 1 3 1 0
ASPDH WILD-TYPE 10 7 11 13 7
'ASPDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 1

Table S163.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ASPDH MUTATED 3 0 5 0
ASPDH WILD-TYPE 14 8 9 16

Figure S15.  Get High-res Image Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ASPDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S164.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ASPDH MUTATED 3 4 0 1
ASPDH WILD-TYPE 13 12 5 17
'ASPDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S165.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ASPDH MUTATED 5 2 1
ASPDH WILD-TYPE 21 10 17
'ASPDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 1

Table S166.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ASPDH MUTATED 4 0 0 4 0
ASPDH WILD-TYPE 9 19 8 10 2

Figure S16.  Get High-res Image Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S167.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ASPDH MUTATED 6 1 1
ASPDH WILD-TYPE 21 12 15
'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S168.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ASPDH MUTATED 2 0 1 4 0 1
ASPDH WILD-TYPE 7 17 6 8 6 4
'C1ORF106 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S169.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C1ORF106 MUTATED 4 2 2 1 0
C1ORF106 WILD-TYPE 17 17 6 7 6
'C1ORF106 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S170.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C1ORF106 MUTATED 3 0 2 1 2
C1ORF106 WILD-TYPE 10 8 12 13 5
'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S171.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C1ORF106 MUTATED 4 2 1 1
C1ORF106 WILD-TYPE 13 6 13 15
'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S172.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C1ORF106 MUTATED 3 2 1 2
C1ORF106 WILD-TYPE 13 14 4 16
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S173.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C1ORF106 MUTATED 5 2 1
C1ORF106 WILD-TYPE 21 10 17
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S174.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C1ORF106 MUTATED 1 2 2 3 0
C1ORF106 WILD-TYPE 12 17 6 11 2
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S175.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C1ORF106 MUTATED 5 2 1
C1ORF106 WILD-TYPE 22 11 15
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S176.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C1ORF106 MUTATED 1 2 1 2 1 1
C1ORF106 WILD-TYPE 8 15 6 10 5 4
'THEM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00358 (Fisher's exact test), Q value = 1

Table S177.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
THEM4 MUTATED 1 0 1 4 0
THEM4 WILD-TYPE 20 19 7 4 6

Figure S17.  Get High-res Image Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S178.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
THEM4 MUTATED 1 1 1 0 1
THEM4 WILD-TYPE 12 7 13 14 6
'THEM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S179.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
THEM4 MUTATED 1 1 2 0
THEM4 WILD-TYPE 16 7 12 16
'THEM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S180.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
THEM4 MUTATED 2 1 0 1
THEM4 WILD-TYPE 14 15 5 17
'THEM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S181.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
THEM4 MUTATED 2 2 0
THEM4 WILD-TYPE 24 10 18
'THEM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0938 (Fisher's exact test), Q value = 1

Table S182.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
THEM4 MUTATED 0 0 1 3 0
THEM4 WILD-TYPE 13 19 7 11 2
'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S183.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
THEM4 MUTATED 2 2 0
THEM4 WILD-TYPE 25 11 16
'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S184.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
THEM4 MUTATED 0 0 1 3 0 0
THEM4 WILD-TYPE 9 17 6 9 6 5
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S185.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CTNNB1 MUTATED 3 2 1 1 0
CTNNB1 WILD-TYPE 18 17 7 7 6
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S186.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CTNNB1 MUTATED 3 2 1 0 0
CTNNB1 WILD-TYPE 10 6 13 14 7
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S187.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CTNNB1 MUTATED 4 2 0 0
CTNNB1 WILD-TYPE 13 6 14 16

Figure S18.  Get High-res Image Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S188.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CTNNB1 MUTATED 5 1 0 0
CTNNB1 WILD-TYPE 11 15 5 18

Figure S19.  Get High-res Image Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00174 (Fisher's exact test), Q value = 1

Table S189.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CTNNB1 MUTATED 1 5 0
CTNNB1 WILD-TYPE 25 7 18

Figure S20.  Get High-res Image Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S190.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CTNNB1 MUTATED 0 2 0 4 0
CTNNB1 WILD-TYPE 13 17 8 10 2
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 1

Table S191.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CTNNB1 MUTATED 2 4 0
CTNNB1 WILD-TYPE 25 9 16

Figure S21.  Get High-res Image Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S192.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CTNNB1 MUTATED 0 2 0 3 1 0
CTNNB1 WILD-TYPE 9 15 7 9 5 5
'GDF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S193.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GDF1 MUTATED 1 2 0 2 0
GDF1 WILD-TYPE 20 17 8 6 6
'GDF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S194.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GDF1 MUTATED 0 0 3 1 0
GDF1 WILD-TYPE 13 8 11 13 7
'GDF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S195.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GDF1 MUTATED 0 1 2 1
GDF1 WILD-TYPE 17 7 12 15
'GDF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S196.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GDF1 MUTATED 0 3 0 1
GDF1 WILD-TYPE 16 13 5 17
'GDF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 1

Table S197.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GDF1 MUTATED 0 2 2
GDF1 WILD-TYPE 26 10 16
'GDF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S198.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GDF1 MUTATED 0 3 0 1 0
GDF1 WILD-TYPE 13 16 8 13 2
'GDF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 1

Table S199.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GDF1 MUTATED 0 3 1
GDF1 WILD-TYPE 27 10 15

Figure S22.  Get High-res Image Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GDF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S200.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GDF1 MUTATED 0 3 0 1 0 0
GDF1 WILD-TYPE 9 14 7 11 6 5
'TSC22D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S201.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TSC22D2 MUTATED 4 1 0 2 1
TSC22D2 WILD-TYPE 17 18 8 6 5
'TSC22D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S202.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TSC22D2 MUTATED 2 0 2 1 2
TSC22D2 WILD-TYPE 11 8 12 13 5
'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S203.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TSC22D2 MUTATED 3 0 2 2
TSC22D2 WILD-TYPE 14 8 12 14
'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S204.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TSC22D2 MUTATED 2 2 1 2
TSC22D2 WILD-TYPE 14 14 4 16
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S205.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TSC22D2 MUTATED 3 2 2
TSC22D2 WILD-TYPE 23 10 16
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S206.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TSC22D2 MUTATED 1 2 0 4 0
TSC22D2 WILD-TYPE 12 17 8 10 2
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S207.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TSC22D2 MUTATED 3 2 2
TSC22D2 WILD-TYPE 24 11 14
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S208.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TSC22D2 MUTATED 1 2 0 4 0 0
TSC22D2 WILD-TYPE 8 15 7 8 6 5
'ZAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S209.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZAR1 MUTATED 3 3 0 2 3
ZAR1 WILD-TYPE 18 16 8 6 3
'ZAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S210.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZAR1 MUTATED 3 1 1 2 2
ZAR1 WILD-TYPE 10 7 13 12 5
'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S211.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZAR1 MUTATED 3 0 2 4
ZAR1 WILD-TYPE 14 8 12 12
'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S212.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZAR1 MUTATED 3 2 0 4
ZAR1 WILD-TYPE 13 14 5 14
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S213.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZAR1 MUTATED 4 1 4
ZAR1 WILD-TYPE 22 11 14
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S214.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZAR1 MUTATED 2 4 1 2 0
ZAR1 WILD-TYPE 11 15 7 12 2
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S215.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZAR1 MUTATED 4 1 4
ZAR1 WILD-TYPE 23 12 12
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S216.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZAR1 MUTATED 2 4 0 2 0 1
ZAR1 WILD-TYPE 7 13 7 10 6 4
'RGS9BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S217.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RGS9BP MUTATED 1 3 2 2 0
RGS9BP WILD-TYPE 20 16 6 6 6
'RGS9BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S218.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RGS9BP MUTATED 3 0 3 1 1
RGS9BP WILD-TYPE 10 8 11 13 6
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S219.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RGS9BP MUTATED 2 1 2 2
RGS9BP WILD-TYPE 15 7 12 14
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S220.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RGS9BP MUTATED 2 3 0 2
RGS9BP WILD-TYPE 14 13 5 16
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S221.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RGS9BP MUTATED 2 3 3
RGS9BP WILD-TYPE 24 9 15
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S222.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RGS9BP MUTATED 2 2 1 3 0
RGS9BP WILD-TYPE 11 17 7 11 2
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S223.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RGS9BP MUTATED 3 2 3
RGS9BP WILD-TYPE 24 11 13
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S224.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RGS9BP MUTATED 1 2 0 3 0 2
RGS9BP WILD-TYPE 8 15 7 9 6 3
'OPRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S225.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
OPRD1 MUTATED 5 4 1 2 0
OPRD1 WILD-TYPE 16 15 7 6 6
'OPRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S226.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
OPRD1 MUTATED 3 1 3 1 3
OPRD1 WILD-TYPE 10 7 11 13 4
'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S227.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
OPRD1 MUTATED 4 2 3 2
OPRD1 WILD-TYPE 13 6 11 14
'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S228.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
OPRD1 MUTATED 3 4 1 3
OPRD1 WILD-TYPE 13 12 4 15
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S229.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
OPRD1 MUTATED 5 4 2
OPRD1 WILD-TYPE 21 8 16
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S230.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
OPRD1 MUTATED 1 5 1 4 0
OPRD1 WILD-TYPE 12 14 7 10 2
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S231.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
OPRD1 MUTATED 5 4 2
OPRD1 WILD-TYPE 22 9 14
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S232.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
OPRD1 MUTATED 1 5 1 4 0 0
OPRD1 WILD-TYPE 8 12 6 8 6 5
'C16ORF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S233.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C16ORF3 MUTATED 2 2 0 1 1
C16ORF3 WILD-TYPE 19 17 8 7 5
'C16ORF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.78

Table S234.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C16ORF3 MUTATED 0 4 0 0 1
C16ORF3 WILD-TYPE 13 4 14 14 6

Figure S23.  Get High-res Image Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S235.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C16ORF3 MUTATED 1 1 2 1
C16ORF3 WILD-TYPE 16 7 12 15
'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S236.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C16ORF3 MUTATED 2 2 0 1
C16ORF3 WILD-TYPE 14 14 5 17
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S237.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C16ORF3 MUTATED 2 2 1
C16ORF3 WILD-TYPE 24 10 17
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S238.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C16ORF3 MUTATED 1 2 1 1 0
C16ORF3 WILD-TYPE 12 17 7 13 2
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S239.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C16ORF3 MUTATED 2 2 1
C16ORF3 WILD-TYPE 25 11 15
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S240.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C16ORF3 MUTATED 1 2 1 0 1 0
C16ORF3 WILD-TYPE 8 15 6 12 5 5
'FPGS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S241.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FPGS MUTATED 2 2 1 1 0
FPGS WILD-TYPE 19 17 7 7 6
'FPGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S242.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
FPGS MUTATED 1 1 1 1 0
FPGS WILD-TYPE 12 7 13 13 7
'FPGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S243.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
FPGS MUTATED 1 1 0 2
FPGS WILD-TYPE 16 7 14 14
'FPGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S244.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
FPGS MUTATED 2 0 0 2
FPGS WILD-TYPE 14 16 5 16
'FPGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 1

Table S245.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
FPGS MUTATED 0 2 2
FPGS WILD-TYPE 26 10 16
'FPGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S246.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
FPGS MUTATED 0 2 0 2 0
FPGS WILD-TYPE 13 17 8 12 2
'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S247.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
FPGS MUTATED 1 1 2
FPGS WILD-TYPE 26 12 14
'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S248.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
FPGS MUTATED 0 2 0 2 0 0
FPGS WILD-TYPE 9 15 7 10 6 5
'PLIN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S249.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PLIN5 MUTATED 1 3 0 1 0
PLIN5 WILD-TYPE 20 16 8 7 6
'PLIN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S250.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PLIN5 MUTATED 1 2 1 1 0
PLIN5 WILD-TYPE 12 6 13 13 7
'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S251.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PLIN5 MUTATED 1 1 2 1
PLIN5 WILD-TYPE 16 7 12 15
'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S252.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PLIN5 MUTATED 1 3 0 1
PLIN5 WILD-TYPE 15 13 5 17
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S253.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PLIN5 MUTATED 1 2 2
PLIN5 WILD-TYPE 25 10 16
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S254.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PLIN5 MUTATED 1 4 0 0 0
PLIN5 WILD-TYPE 12 15 8 14 2
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S255.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PLIN5 MUTATED 1 3 1
PLIN5 WILD-TYPE 26 10 15
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S256.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PLIN5 MUTATED 1 4 0 0 0 0
PLIN5 WILD-TYPE 8 13 7 12 6 5
'IRX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S257.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
IRX3 MUTATED 3 0 1 1 0
IRX3 WILD-TYPE 18 19 7 7 6
'IRX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S258.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
IRX3 MUTATED 0 1 2 1 0
IRX3 WILD-TYPE 13 7 12 13 7
'IRX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S259.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
IRX3 MUTATED 2 1 1 0
IRX3 WILD-TYPE 15 7 13 16
'IRX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S260.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
IRX3 MUTATED 1 2 1 0
IRX3 WILD-TYPE 15 14 4 18
'IRX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S261.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
IRX3 MUTATED 2 2 0
IRX3 WILD-TYPE 24 10 18
'IRX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S262.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
IRX3 MUTATED 2 1 0 1 0
IRX3 WILD-TYPE 11 18 8 13 2
'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S263.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
IRX3 MUTATED 2 2 0
IRX3 WILD-TYPE 25 11 16
'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S264.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
IRX3 MUTATED 2 0 0 0 2 0
IRX3 WILD-TYPE 7 17 7 12 4 5

Figure S24.  Get High-res Image Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRIOBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S265.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TRIOBP MUTATED 5 4 2 1 0
TRIOBP WILD-TYPE 16 15 6 7 6
'TRIOBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S266.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TRIOBP MUTATED 3 1 0 4 2
TRIOBP WILD-TYPE 10 7 14 10 5
'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S267.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TRIOBP MUTATED 3 1 2 3
TRIOBP WILD-TYPE 14 7 12 13
'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S268.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TRIOBP MUTATED 3 0 1 5
TRIOBP WILD-TYPE 13 16 4 13
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S269.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TRIOBP MUTATED 4 2 4
TRIOBP WILD-TYPE 22 10 14
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S270.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TRIOBP MUTATED 2 3 2 3 0
TRIOBP WILD-TYPE 11 16 6 11 2
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S271.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TRIOBP MUTATED 4 2 4
TRIOBP WILD-TYPE 23 11 12
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S272.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TRIOBP MUTATED 1 2 1 3 1 2
TRIOBP WILD-TYPE 8 15 6 9 5 3
'KRTAP4-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S273.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KRTAP4-5 MUTATED 2 3 0 0 0
KRTAP4-5 WILD-TYPE 19 16 8 8 6
'KRTAP4-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S274.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KRTAP4-5 MUTATED 1 2 0 1 0
KRTAP4-5 WILD-TYPE 12 6 14 13 7
'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S275.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KRTAP4-5 MUTATED 2 0 1 1
KRTAP4-5 WILD-TYPE 15 8 13 15
'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S276.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KRTAP4-5 MUTATED 2 1 0 1
KRTAP4-5 WILD-TYPE 14 15 5 17
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S277.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KRTAP4-5 MUTATED 2 1 1
KRTAP4-5 WILD-TYPE 24 11 17
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S278.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KRTAP4-5 MUTATED 1 1 0 2 0
KRTAP4-5 WILD-TYPE 12 18 8 12 2
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S279.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KRTAP4-5 MUTATED 2 1 1
KRTAP4-5 WILD-TYPE 25 12 15
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S280.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KRTAP4-5 MUTATED 1 1 0 1 1 0
KRTAP4-5 WILD-TYPE 8 16 7 11 5 5
'ATXN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S281.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ATXN1 MUTATED 3 3 3 0 1
ATXN1 WILD-TYPE 18 16 5 8 5
'ATXN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S282.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ATXN1 MUTATED 1 4 2 1 1
ATXN1 WILD-TYPE 12 4 12 13 6
'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S283.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ATXN1 MUTATED 2 3 3 1
ATXN1 WILD-TYPE 15 5 11 15
'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S284.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ATXN1 MUTATED 3 4 0 2
ATXN1 WILD-TYPE 13 12 5 16
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S285.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ATXN1 MUTATED 5 3 1
ATXN1 WILD-TYPE 21 9 17
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S286.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ATXN1 MUTATED 2 2 2 3 0
ATXN1 WILD-TYPE 11 17 6 11 2
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S287.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ATXN1 MUTATED 5 3 1
ATXN1 WILD-TYPE 22 10 15
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S288.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ATXN1 MUTATED 2 2 2 2 1 0
ATXN1 WILD-TYPE 7 15 5 10 5 5
'ZNF628 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S289.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZNF628 MUTATED 4 1 0 2 0
ZNF628 WILD-TYPE 17 18 8 6 6
'ZNF628 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S290.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZNF628 MUTATED 2 1 1 1 0
ZNF628 WILD-TYPE 11 7 13 13 7
'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S291.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZNF628 MUTATED 3 1 1 0
ZNF628 WILD-TYPE 14 7 13 16
'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S292.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZNF628 MUTATED 3 1 1 0
ZNF628 WILD-TYPE 13 15 4 18
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S293.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZNF628 MUTATED 1 3 1
ZNF628 WILD-TYPE 25 9 17
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S294.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZNF628 MUTATED 0 3 0 2 0
ZNF628 WILD-TYPE 13 16 8 12 2
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 1

Table S295.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZNF628 MUTATED 2 3 0
ZNF628 WILD-TYPE 25 10 16
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S296.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZNF628 MUTATED 0 2 0 2 1 0
ZNF628 WILD-TYPE 9 15 7 10 5 5
'WDR34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S297.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
WDR34 MUTATED 2 1 0 1 1
WDR34 WILD-TYPE 19 18 8 7 5
'WDR34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S298.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
WDR34 MUTATED 2 0 1 1 1
WDR34 WILD-TYPE 11 8 13 13 6
'WDR34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S299.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
WDR34 MUTATED 2 0 1 2
WDR34 WILD-TYPE 15 8 13 14
'WDR34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S300.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
WDR34 MUTATED 2 2 0 1
WDR34 WILD-TYPE 14 14 5 17
'WDR34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S301.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
WDR34 MUTATED 3 1 1
WDR34 WILD-TYPE 23 11 17
'WDR34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S302.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
WDR34 MUTATED 1 1 0 3 0
WDR34 WILD-TYPE 12 18 8 11 2
'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S303.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
WDR34 MUTATED 3 1 1
WDR34 WILD-TYPE 24 12 15
'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S304.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
WDR34 MUTATED 0 1 1 3 0 0
WDR34 WILD-TYPE 9 16 6 9 6 5
'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S305.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
BTBD11 MUTATED 2 2 1 1 0
BTBD11 WILD-TYPE 19 17 7 7 6
'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S306.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
BTBD11 MUTATED 1 1 1 0 2
BTBD11 WILD-TYPE 12 7 13 14 5
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S307.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
BTBD11 MUTATED 1 0 3 1
BTBD11 WILD-TYPE 16 8 11 15
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S308.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
BTBD11 MUTATED 1 2 0 2
BTBD11 WILD-TYPE 15 14 5 16
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S309.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
BTBD11 MUTATED 4 0 1
BTBD11 WILD-TYPE 22 12 17
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S310.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
BTBD11 MUTATED 2 0 2 1 0
BTBD11 WILD-TYPE 11 19 6 13 2
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S311.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
BTBD11 MUTATED 4 0 1
BTBD11 WILD-TYPE 23 13 15
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S312.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
BTBD11 MUTATED 2 0 1 1 0 1
BTBD11 WILD-TYPE 7 17 6 11 6 4
'GARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S313.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GARS MUTATED 6 4 3 4 4
GARS WILD-TYPE 15 15 5 4 2
'GARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 1

Table S314.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GARS MUTATED 2 0 4 6 4
GARS WILD-TYPE 11 8 10 8 3
'GARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S315.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GARS MUTATED 4 1 4 7
GARS WILD-TYPE 13 7 10 9
'GARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 1

Table S316.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GARS MUTATED 2 3 3 8
GARS WILD-TYPE 14 13 2 10
'GARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S317.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GARS MUTATED 6 2 8
GARS WILD-TYPE 20 10 10
'GARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S318.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GARS MUTATED 3 7 4 2 0
GARS WILD-TYPE 10 12 4 12 2
'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S319.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GARS MUTATED 6 2 8
GARS WILD-TYPE 21 11 8
'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S320.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GARS MUTATED 2 6 2 1 2 3
GARS WILD-TYPE 7 11 5 11 4 2
'ZNF598 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S321.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZNF598 MUTATED 6 2 1 3 1
ZNF598 WILD-TYPE 15 17 7 5 5
'ZNF598 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S322.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZNF598 MUTATED 3 0 2 4 0
ZNF598 WILD-TYPE 10 8 12 10 7
'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S323.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZNF598 MUTATED 4 0 3 2
ZNF598 WILD-TYPE 13 8 11 14
'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S324.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZNF598 MUTATED 3 2 1 3
ZNF598 WILD-TYPE 13 14 4 15
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S325.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZNF598 MUTATED 4 2 3
ZNF598 WILD-TYPE 22 10 15
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S326.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZNF598 MUTATED 1 3 0 5 0
ZNF598 WILD-TYPE 12 16 8 9 2
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S327.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZNF598 MUTATED 4 2 3
ZNF598 WILD-TYPE 23 11 13
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S328.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZNF598 MUTATED 1 3 0 5 0 0
ZNF598 WILD-TYPE 8 14 7 7 6 5
'BHLHE22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S329.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
BHLHE22 MUTATED 1 2 2 0 0
BHLHE22 WILD-TYPE 20 17 6 8 6
'BHLHE22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 1

Table S330.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
BHLHE22 MUTATED 0 3 1 1 0
BHLHE22 WILD-TYPE 13 5 13 13 7
'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S331.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
BHLHE22 MUTATED 0 2 2 1
BHLHE22 WILD-TYPE 17 6 12 15
'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S332.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
BHLHE22 MUTATED 2 2 0 1
BHLHE22 WILD-TYPE 14 14 5 17
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S333.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
BHLHE22 MUTATED 2 2 1
BHLHE22 WILD-TYPE 24 10 17
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S334.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
BHLHE22 MUTATED 2 2 0 1 0
BHLHE22 WILD-TYPE 11 17 8 13 2
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S335.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
BHLHE22 MUTATED 2 2 1
BHLHE22 WILD-TYPE 25 11 15
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S336.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
BHLHE22 MUTATED 2 2 0 1 0 0
BHLHE22 WILD-TYPE 7 15 7 11 6 5
'PTPLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S337.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PTPLA MUTATED 2 0 1 1 0
PTPLA WILD-TYPE 19 19 7 7 6
'PTPLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S338.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PTPLA MUTATED 0 1 2 0 0
PTPLA WILD-TYPE 13 7 12 14 7
'PTPLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S339.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PTPLA MUTATED 1 0 2 0
PTPLA WILD-TYPE 16 8 12 16
'PTPLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S340.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PTPLA MUTATED 1 2 0 0
PTPLA WILD-TYPE 15 14 5 18
'PTPLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S341.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PTPLA MUTATED 1 1 1
PTPLA WILD-TYPE 25 11 17
'PTPLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S342.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PTPLA MUTATED 1 1 0 1 0
PTPLA WILD-TYPE 12 18 8 13 2
'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S343.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PTPLA MUTATED 1 2 0
PTPLA WILD-TYPE 26 11 16
'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S344.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PTPLA MUTATED 1 1 0 0 1 0
PTPLA WILD-TYPE 8 16 7 12 5 5
'CD320 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S345.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CD320 MUTATED 2 1 1 0 0
CD320 WILD-TYPE 19 18 7 8 6
'CD320 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S346.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CD320 MUTATED 1 0 1 2 0
CD320 WILD-TYPE 12 8 13 12 7
'CD320 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S347.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CD320 MUTATED 1 0 2 1
CD320 WILD-TYPE 16 8 12 15
'CD320 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S348.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CD320 MUTATED 1 1 1 1
CD320 WILD-TYPE 15 15 4 17
'CD320 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S349.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CD320 MUTATED 3 1 0
CD320 WILD-TYPE 23 11 18
'CD320 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S350.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CD320 MUTATED 1 0 2 1 0
CD320 WILD-TYPE 12 19 6 13 2
'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S351.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CD320 MUTATED 4 0 0
CD320 WILD-TYPE 23 13 16
'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S352.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CD320 MUTATED 1 0 2 1 0 0
CD320 WILD-TYPE 8 17 5 11 6 5
'KIAA1984 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S353.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KIAA1984 MUTATED 1 0 1 1 1
KIAA1984 WILD-TYPE 20 19 7 7 5
'KIAA1984 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S354.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KIAA1984 MUTATED 0 1 2 1 0
KIAA1984 WILD-TYPE 13 7 12 13 7
'KIAA1984 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S355.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KIAA1984 MUTATED 1 0 3 0
KIAA1984 WILD-TYPE 16 8 11 16
'KIAA1984 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0463 (Fisher's exact test), Q value = 1

Table S356.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KIAA1984 MUTATED 0 3 1 0
KIAA1984 WILD-TYPE 16 13 4 18

Figure S25.  Get High-res Image Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S357.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KIAA1984 MUTATED 1 3 0
KIAA1984 WILD-TYPE 25 9 18

Figure S26.  Get High-res Image Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S358.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KIAA1984 MUTATED 0 1 1 2 0
KIAA1984 WILD-TYPE 13 18 7 12 2
'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 1

Table S359.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KIAA1984 MUTATED 1 3 0
KIAA1984 WILD-TYPE 26 10 16
'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S360.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KIAA1984 MUTATED 0 1 1 2 0 0
KIAA1984 WILD-TYPE 9 16 6 10 6 5
'TPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S361.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TPO MUTATED 6 2 1 1 2
TPO WILD-TYPE 15 17 7 7 4
'TPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S362.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TPO MUTATED 3 3 1 2 0
TPO WILD-TYPE 10 5 13 12 7
'TPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S363.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TPO MUTATED 5 2 1 1
TPO WILD-TYPE 12 6 13 15
'TPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S364.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TPO MUTATED 4 2 2 1
TPO WILD-TYPE 12 14 3 17
'TPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S365.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TPO MUTATED 4 4 1
TPO WILD-TYPE 22 8 17
'TPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S366.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TPO MUTATED 1 2 1 5 0
TPO WILD-TYPE 12 17 7 9 2
'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S367.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TPO MUTATED 4 4 1
TPO WILD-TYPE 23 9 15
'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S368.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TPO MUTATED 1 1 0 5 1 1
TPO WILD-TYPE 8 16 7 7 5 4
'AATK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S369.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
AATK MUTATED 0 4 1 0 1
AATK WILD-TYPE 21 15 7 8 5
'AATK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S370.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
AATK MUTATED 0 1 2 0 1
AATK WILD-TYPE 13 7 12 14 6
'AATK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S371.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
AATK MUTATED 0 1 2 1
AATK WILD-TYPE 17 7 12 15
'AATK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S372.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
AATK MUTATED 0 3 0 1
AATK WILD-TYPE 16 13 5 17
'AATK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S373.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
AATK MUTATED 2 1 1
AATK WILD-TYPE 24 11 17
'AATK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S374.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
AATK MUTATED 2 2 0 0 0
AATK WILD-TYPE 11 17 8 14 2
'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S375.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
AATK MUTATED 2 1 1
AATK WILD-TYPE 25 12 15
'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S376.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
AATK MUTATED 2 2 0 0 0 0
AATK WILD-TYPE 7 15 7 12 6 5
'PANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S377.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PANK2 MUTATED 3 1 0 1 0
PANK2 WILD-TYPE 18 18 8 7 6
'PANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S378.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PANK2 MUTATED 2 0 0 1 0
PANK2 WILD-TYPE 11 8 14 13 7
'PANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S379.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PANK2 MUTATED 3 0 0 0
PANK2 WILD-TYPE 14 8 14 16
'PANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S380.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PANK2 MUTATED 2 0 1 0
PANK2 WILD-TYPE 14 16 4 18
'PANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S381.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PANK2 MUTATED 2 1 0
PANK2 WILD-TYPE 24 11 18
'PANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S382.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PANK2 MUTATED 1 0 0 2 0
PANK2 WILD-TYPE 12 19 8 12 2
'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S383.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PANK2 MUTATED 2 1 0
PANK2 WILD-TYPE 25 12 16
'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S384.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PANK2 MUTATED 1 0 0 2 0 0
PANK2 WILD-TYPE 8 17 7 10 6 5
'SNED1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S385.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SNED1 MUTATED 4 1 0 0 1
SNED1 WILD-TYPE 17 18 8 8 5
'SNED1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S386.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SNED1 MUTATED 2 2 1 1 0
SNED1 WILD-TYPE 11 6 13 13 7
'SNED1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S387.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SNED1 MUTATED 4 1 0 1
SNED1 WILD-TYPE 13 7 14 15
'SNED1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S388.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SNED1 MUTATED 3 1 1 1
SNED1 WILD-TYPE 13 15 4 17
'SNED1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 1

Table S389.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SNED1 MUTATED 1 4 1
SNED1 WILD-TYPE 25 8 17

Figure S27.  Get High-res Image Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SNED1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S390.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SNED1 MUTATED 0 3 1 2 0
SNED1 WILD-TYPE 13 16 7 12 2
'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 1

Table S391.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SNED1 MUTATED 1 4 1
SNED1 WILD-TYPE 26 9 15

Figure S28.  Get High-res Image Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S392.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SNED1 MUTATED 0 2 0 1 2 1
SNED1 WILD-TYPE 9 15 7 11 4 4
'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S393.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CCDC150 MUTATED 2 0 1 1 0
CCDC150 WILD-TYPE 19 19 7 7 6
'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S394.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CCDC150 MUTATED 2 0 1 1 0
CCDC150 WILD-TYPE 11 8 13 13 7
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S395.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CCDC150 MUTATED 3 0 1 0
CCDC150 WILD-TYPE 14 8 13 16
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S396.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CCDC150 MUTATED 2 1 1 0
CCDC150 WILD-TYPE 14 15 4 18
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S397.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CCDC150 MUTATED 3 1 0
CCDC150 WILD-TYPE 23 11 18
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S398.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CCDC150 MUTATED 1 0 0 3 0
CCDC150 WILD-TYPE 12 19 8 11 2
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S399.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CCDC150 MUTATED 3 1 0
CCDC150 WILD-TYPE 24 12 16
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S400.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CCDC150 MUTATED 1 0 0 3 0 0
CCDC150 WILD-TYPE 8 17 7 9 6 5
'ERCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S401.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ERCC2 MUTATED 3 3 2 2 0
ERCC2 WILD-TYPE 18 16 6 6 6
'ERCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S402.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ERCC2 MUTATED 4 3 2 1 0
ERCC2 WILD-TYPE 9 5 12 13 7
'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S403.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ERCC2 MUTATED 4 2 3 1
ERCC2 WILD-TYPE 13 6 11 15
'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S404.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ERCC2 MUTATED 5 4 0 1
ERCC2 WILD-TYPE 11 12 5 17
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S405.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ERCC2 MUTATED 6 2 2
ERCC2 WILD-TYPE 20 10 16
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S406.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ERCC2 MUTATED 3 2 0 5 0
ERCC2 WILD-TYPE 10 17 8 9 2
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S407.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ERCC2 MUTATED 7 2 1
ERCC2 WILD-TYPE 20 11 15
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 1

Table S408.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ERCC2 MUTATED 3 2 0 5 0 0
ERCC2 WILD-TYPE 6 15 7 7 6 5
'RREB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S409.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RREB1 MUTATED 3 1 1 0 0
RREB1 WILD-TYPE 18 18 7 8 6
'RREB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S410.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RREB1 MUTATED 2 0 1 1 0
RREB1 WILD-TYPE 11 8 13 13 7
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S411.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RREB1 MUTATED 1 1 1 0
RREB1 WILD-TYPE 16 7 13 16
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S412.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RREB1 MUTATED 1 1 0 1
RREB1 WILD-TYPE 15 15 5 17
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S413.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RREB1 MUTATED 1 1 2
RREB1 WILD-TYPE 25 11 16
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S414.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RREB1 MUTATED 2 2 0 0 0
RREB1 WILD-TYPE 11 17 8 14 2
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S415.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RREB1 MUTATED 1 1 2
RREB1 WILD-TYPE 26 12 14
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S416.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RREB1 MUTATED 1 2 0 0 0 1
RREB1 WILD-TYPE 8 15 7 12 6 4
'RNF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S417.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RNF39 MUTATED 2 1 0 2 0
RNF39 WILD-TYPE 19 18 8 6 6
'RNF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S418.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RNF39 MUTATED 1 2 2 0 0
RNF39 WILD-TYPE 12 6 12 14 7
'RNF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S419.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RNF39 MUTATED 1 1 3 0
RNF39 WILD-TYPE 16 7 11 16
'RNF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S420.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RNF39 MUTATED 2 3 0 0
RNF39 WILD-TYPE 14 13 5 18
'RNF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S421.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RNF39 MUTATED 3 2 0
RNF39 WILD-TYPE 23 10 18
'RNF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S422.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RNF39 MUTATED 2 1 0 2 0
RNF39 WILD-TYPE 11 18 8 12 2
'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S423.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RNF39 MUTATED 3 2 0
RNF39 WILD-TYPE 24 11 16
'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S424.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RNF39 MUTATED 2 1 0 2 0 0
RNF39 WILD-TYPE 7 16 7 10 6 5
'SEMA5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S425.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SEMA5B MUTATED 5 2 0 0 1
SEMA5B WILD-TYPE 16 17 8 8 5
'SEMA5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S426.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SEMA5B MUTATED 2 1 0 3 0
SEMA5B WILD-TYPE 11 7 14 11 7
'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S427.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SEMA5B MUTATED 3 1 0 2
SEMA5B WILD-TYPE 14 7 14 14
'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S428.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SEMA5B MUTATED 3 0 1 2
SEMA5B WILD-TYPE 13 16 4 16
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S429.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SEMA5B MUTATED 2 2 2
SEMA5B WILD-TYPE 24 10 16
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S430.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SEMA5B MUTATED 0 4 0 2 0
SEMA5B WILD-TYPE 13 15 8 12 2
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S431.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SEMA5B MUTATED 2 2 2
SEMA5B WILD-TYPE 25 11 14
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S432.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SEMA5B MUTATED 0 3 0 2 1 0
SEMA5B WILD-TYPE 9 14 7 10 5 5
'TAF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S433.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TAF5 MUTATED 2 1 1 0 0
TAF5 WILD-TYPE 19 18 7 8 6
'TAF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S434.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TAF5 MUTATED 1 1 1 0 1
TAF5 WILD-TYPE 12 7 13 14 6
'TAF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S435.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TAF5 MUTATED 1 1 1 1
TAF5 WILD-TYPE 16 7 13 15
'TAF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S436.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TAF5 MUTATED 2 1 0 1
TAF5 WILD-TYPE 14 15 5 17
'TAF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S437.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TAF5 MUTATED 0 3 1
TAF5 WILD-TYPE 26 9 17

Figure S29.  Get High-res Image Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TAF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S438.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TAF5 MUTATED 0 4 0 0 0
TAF5 WILD-TYPE 13 15 8 14 2
'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S439.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TAF5 MUTATED 0 3 1
TAF5 WILD-TYPE 27 10 15

Figure S30.  Get High-res Image Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S440.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TAF5 MUTATED 0 4 0 0 0 0
TAF5 WILD-TYPE 9 13 7 12 6 5
'SARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 1

Table S441.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SARM1 MUTATED 4 0 0 3 0
SARM1 WILD-TYPE 17 19 8 5 6

Figure S31.  Get High-res Image Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S442.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SARM1 MUTATED 0 1 3 2 0
SARM1 WILD-TYPE 13 7 11 12 7
'SARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S443.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SARM1 MUTATED 2 1 3 0
SARM1 WILD-TYPE 15 7 11 16
'SARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S444.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SARM1 MUTATED 1 3 2 0
SARM1 WILD-TYPE 15 13 3 18

Figure S32.  Get High-res Image Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S445.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SARM1 MUTATED 1 3 2
SARM1 WILD-TYPE 25 9 16
'SARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S446.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SARM1 MUTATED 2 3 0 1 0
SARM1 WILD-TYPE 11 16 8 13 2
'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 1

Table S447.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SARM1 MUTATED 1 4 1
SARM1 WILD-TYPE 26 9 15

Figure S33.  Get High-res Image Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S448.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SARM1 MUTATED 1 2 0 1 1 1
SARM1 WILD-TYPE 8 15 7 11 5 4
'PRSS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S449.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PRSS27 MUTATED 1 1 1 0 0
PRSS27 WILD-TYPE 20 18 7 8 6
'PRSS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S450.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PRSS27 MUTATED 0 1 1 1 0
PRSS27 WILD-TYPE 13 7 13 13 7
'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S451.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PRSS27 MUTATED 1 1 1 0
PRSS27 WILD-TYPE 16 7 13 16
'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S452.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PRSS27 MUTATED 0 2 1 0
PRSS27 WILD-TYPE 16 14 4 18
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S453.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PRSS27 MUTATED 1 2 0
PRSS27 WILD-TYPE 25 10 18
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S454.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PRSS27 MUTATED 1 1 0 1 0
PRSS27 WILD-TYPE 12 18 8 13 2
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S455.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PRSS27 MUTATED 1 2 0
PRSS27 WILD-TYPE 26 11 16
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S456.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PRSS27 MUTATED 1 1 0 1 0 0
PRSS27 WILD-TYPE 8 16 7 11 6 5
'TMEM189 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S457.  Gene #58: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TMEM189 MUTATED 2 0 0 2 0
TMEM189 WILD-TYPE 19 19 8 6 6
'NOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S458.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NOXA1 MUTATED 3 0 2 0 0
NOXA1 WILD-TYPE 18 19 6 8 6
'NOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S459.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NOXA1 MUTATED 2 0 1 0 0
NOXA1 WILD-TYPE 11 8 13 14 7
'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S460.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NOXA1 MUTATED 2 1 0 0
NOXA1 WILD-TYPE 15 7 14 16
'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S461.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NOXA1 MUTATED 2 1 0 0
NOXA1 WILD-TYPE 14 15 5 18
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S462.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NOXA1 MUTATED 3 0 0
NOXA1 WILD-TYPE 23 12 18
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S463.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NOXA1 MUTATED 1 0 0 2 0
NOXA1 WILD-TYPE 12 19 8 12 2
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S464.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NOXA1 MUTATED 3 0 0
NOXA1 WILD-TYPE 24 13 16
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S465.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NOXA1 MUTATED 1 0 0 2 0 0
NOXA1 WILD-TYPE 8 17 7 10 6 5
'LRP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 1

Table S466.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LRP11 MUTATED 0 2 1 3 0
LRP11 WILD-TYPE 21 17 7 5 6

Figure S34.  Get High-res Image Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 1

Table S467.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LRP11 MUTATED 1 0 4 0 0
LRP11 WILD-TYPE 12 8 10 14 7
'LRP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S468.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LRP11 MUTATED 1 1 2 1
LRP11 WILD-TYPE 16 7 12 15
'LRP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S469.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LRP11 MUTATED 1 3 0 1
LRP11 WILD-TYPE 15 13 5 17
'LRP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S470.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LRP11 MUTATED 2 2 1
LRP11 WILD-TYPE 24 10 17
'LRP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S471.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LRP11 MUTATED 1 2 0 2 0
LRP11 WILD-TYPE 12 17 8 12 2
'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S472.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LRP11 MUTATED 2 2 1
LRP11 WILD-TYPE 25 11 15
'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S473.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LRP11 MUTATED 1 2 0 2 0 0
LRP11 WILD-TYPE 8 15 7 10 6 5
'RNF149 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S474.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RNF149 MUTATED 0 2 1 1 0
RNF149 WILD-TYPE 21 17 7 7 6
'RNF149 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 1

Table S475.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RNF149 MUTATED 0 0 2 0 2
RNF149 WILD-TYPE 13 8 12 14 5

Figure S35.  Get High-res Image Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF149 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S476.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RNF149 MUTATED 0 1 2 1
RNF149 WILD-TYPE 17 7 12 15
'RNF149 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S477.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RNF149 MUTATED 0 2 0 2
RNF149 WILD-TYPE 16 14 5 16
'RNF149 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S478.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RNF149 MUTATED 1 2 1
RNF149 WILD-TYPE 25 10 17
'RNF149 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S479.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RNF149 MUTATED 0 3 1 0 0
RNF149 WILD-TYPE 13 16 7 14 2
'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S480.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RNF149 MUTATED 1 2 1
RNF149 WILD-TYPE 26 11 15
'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S481.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RNF149 MUTATED 0 3 1 0 0 0
RNF149 WILD-TYPE 9 14 6 12 6 5
'DMKN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S482.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
DMKN MUTATED 1 1 0 1 0
DMKN WILD-TYPE 20 18 8 7 6
'DMKN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S483.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
DMKN MUTATED 0 1 2 0 0
DMKN WILD-TYPE 13 7 12 14 7
'DMKN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S484.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
DMKN MUTATED 1 1 1 0
DMKN WILD-TYPE 16 7 13 16
'DMKN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S485.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
DMKN MUTATED 1 2 0 0
DMKN WILD-TYPE 15 14 5 18
'DMKN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 1

Table S486.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
DMKN MUTATED 0 3 0
DMKN WILD-TYPE 26 9 18

Figure S36.  Get High-res Image Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DMKN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S487.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
DMKN MUTATED 0 1 0 2 0
DMKN WILD-TYPE 13 18 8 12 2
'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 1

Table S488.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
DMKN MUTATED 0 3 0
DMKN WILD-TYPE 27 10 16

Figure S37.  Get High-res Image Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S489.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
DMKN MUTATED 0 1 0 1 1 0
DMKN WILD-TYPE 9 16 7 11 5 5
'FANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S490.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FANK1 MUTATED 2 1 1 0 0
FANK1 WILD-TYPE 19 18 7 8 6
'FANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S491.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
FANK1 MUTATED 0 1 0 1 1
FANK1 WILD-TYPE 13 7 14 13 6
'FANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S492.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
FANK1 MUTATED 1 1 0 1
FANK1 WILD-TYPE 16 7 14 15
'FANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S493.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
FANK1 MUTATED 1 0 1 1
FANK1 WILD-TYPE 15 16 4 17
'FANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S494.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
FANK1 MUTATED 1 1 1
FANK1 WILD-TYPE 25 11 17
'FANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S495.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
FANK1 MUTATED 0 0 1 2 0
FANK1 WILD-TYPE 13 19 7 12 2
'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S496.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
FANK1 MUTATED 1 1 1
FANK1 WILD-TYPE 26 12 15
'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S497.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
FANK1 MUTATED 0 0 0 1 1 1
FANK1 WILD-TYPE 9 17 7 11 5 4
'MUC5B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S498.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MUC5B MUTATED 7 6 3 3 2
MUC5B WILD-TYPE 14 13 5 5 4
'MUC5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S499.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MUC5B MUTATED 3 3 6 4 4
MUC5B WILD-TYPE 10 5 8 10 3
'MUC5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S500.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MUC5B MUTATED 5 3 7 5
MUC5B WILD-TYPE 12 5 7 11
'MUC5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S501.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MUC5B MUTATED 4 7 2 7
MUC5B WILD-TYPE 12 9 3 11
'MUC5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S502.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MUC5B MUTATED 8 5 7
MUC5B WILD-TYPE 18 7 11
'MUC5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S503.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MUC5B MUTATED 3 7 4 6 0
MUC5B WILD-TYPE 10 12 4 8 2
'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S504.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MUC5B MUTATED 8 6 6
MUC5B WILD-TYPE 19 7 10
'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S505.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MUC5B MUTATED 3 6 2 6 1 2
MUC5B WILD-TYPE 6 11 5 6 5 3
'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S506.  Gene #65: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PABPC1 MUTATED 1 1 2 0 0
PABPC1 WILD-TYPE 20 18 6 8 6
'GLTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 1

Table S507.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GLTPD2 MUTATED 1 1 0 3 1
GLTPD2 WILD-TYPE 20 18 8 5 5
'GLTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S508.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GLTPD2 MUTATED 1 0 2 2 1
GLTPD2 WILD-TYPE 12 8 12 12 6
'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S509.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GLTPD2 MUTATED 2 0 2 2
GLTPD2 WILD-TYPE 15 8 12 14
'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S510.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GLTPD2 MUTATED 1 3 1 1
GLTPD2 WILD-TYPE 15 13 4 17
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S511.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GLTPD2 MUTATED 3 2 1
GLTPD2 WILD-TYPE 23 10 17
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S512.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GLTPD2 MUTATED 2 1 0 3 0
GLTPD2 WILD-TYPE 11 18 8 11 2
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S513.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GLTPD2 MUTATED 3 2 1
GLTPD2 WILD-TYPE 24 11 15
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S514.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GLTPD2 MUTATED 1 1 1 3 0 0
GLTPD2 WILD-TYPE 8 16 6 9 6 5
'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 1

Table S515.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MEN1 MUTATED 0 1 1 2 0
MEN1 WILD-TYPE 21 18 7 6 6
'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 1

Table S516.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MEN1 MUTATED 0 1 4 0 0
MEN1 WILD-TYPE 13 7 10 14 7

Figure S38.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S517.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MEN1 MUTATED 0 1 4 0
MEN1 WILD-TYPE 17 7 10 16

Figure S39.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00613 (Fisher's exact test), Q value = 1

Table S518.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MEN1 MUTATED 0 5 0 0
MEN1 WILD-TYPE 16 11 5 18

Figure S40.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S519.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MEN1 MUTATED 4 1 0
MEN1 WILD-TYPE 22 11 18
'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 1

Table S520.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MEN1 MUTATED 4 0 0 1 0
MEN1 WILD-TYPE 9 19 8 13 2

Figure S41.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S521.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MEN1 MUTATED 4 1 0
MEN1 WILD-TYPE 23 12 16
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00889 (Fisher's exact test), Q value = 1

Table S522.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MEN1 MUTATED 4 0 0 1 0 0
MEN1 WILD-TYPE 5 17 7 11 6 5

Figure S42.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SRPX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S523.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SRPX MUTATED 1 2 0 0 0
SRPX WILD-TYPE 20 17 8 8 6
'SRPX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S524.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SRPX MUTATED 0 2 0 1 0
SRPX WILD-TYPE 13 6 14 13 7
'SRPX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S525.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SRPX MUTATED 0 1 1 1
SRPX WILD-TYPE 17 7 13 15
'SRPX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S526.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SRPX MUTATED 1 1 0 1
SRPX WILD-TYPE 15 15 5 17
'SRPX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S527.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SRPX MUTATED 1 1 1
SRPX WILD-TYPE 25 11 17
'SRPX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S528.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SRPX MUTATED 1 2 0 0 0
SRPX WILD-TYPE 12 17 8 14 2
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S529.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SRPX MUTATED 1 1 1
SRPX WILD-TYPE 26 12 15
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S530.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SRPX MUTATED 1 2 0 0 0 0
SRPX WILD-TYPE 8 15 7 12 6 5
'MAP1S MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S531.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MAP1S MUTATED 0 2 1 1 1
MAP1S WILD-TYPE 21 17 7 7 5
'MAP1S MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S532.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MAP1S MUTATED 1 1 0 3 0
MAP1S WILD-TYPE 12 7 14 11 7
'MAP1S MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S533.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MAP1S MUTATED 1 1 0 3
MAP1S WILD-TYPE 16 7 14 13
'MAP1S MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S534.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MAP1S MUTATED 2 1 0 2
MAP1S WILD-TYPE 14 15 5 16
'MAP1S MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S535.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MAP1S MUTATED 2 1 2
MAP1S WILD-TYPE 24 11 16
'MAP1S MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S536.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MAP1S MUTATED 2 2 0 1 0
MAP1S WILD-TYPE 11 17 8 13 2
'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S537.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MAP1S MUTATED 2 1 2
MAP1S WILD-TYPE 25 12 14
'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S538.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MAP1S MUTATED 1 2 1 1 0 0
MAP1S WILD-TYPE 8 15 6 11 6 5
'SCRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S539.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SCRT1 MUTATED 1 1 0 1 0
SCRT1 WILD-TYPE 20 18 8 7 6
'SCRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S540.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SCRT1 MUTATED 2 0 0 1 0
SCRT1 WILD-TYPE 11 8 14 13 7
'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S541.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SCRT1 MUTATED 2 0 1 0
SCRT1 WILD-TYPE 15 8 13 16
'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S542.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SCRT1 MUTATED 2 0 0 1
SCRT1 WILD-TYPE 14 16 5 17
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S543.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SCRT1 MUTATED 2 1 0
SCRT1 WILD-TYPE 24 11 18
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S544.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SCRT1 MUTATED 0 1 1 1 0
SCRT1 WILD-TYPE 13 18 7 13 2
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S545.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SCRT1 MUTATED 2 1 0
SCRT1 WILD-TYPE 25 12 16
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S546.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SCRT1 MUTATED 0 1 1 1 0 0
SCRT1 WILD-TYPE 9 16 6 11 6 5
'OBSCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S547.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
OBSCN MUTATED 9 6 1 2 2
OBSCN WILD-TYPE 12 13 7 6 4
'OBSCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S548.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
OBSCN MUTATED 4 5 2 5 2
OBSCN WILD-TYPE 9 3 12 9 5
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S549.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
OBSCN MUTATED 7 2 6 3
OBSCN WILD-TYPE 10 6 8 13
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S550.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
OBSCN MUTATED 5 5 3 5
OBSCN WILD-TYPE 11 11 2 13
'OBSCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 1

Table S551.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
OBSCN MUTATED 7 7 4
OBSCN WILD-TYPE 19 5 14
'OBSCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S552.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
OBSCN MUTATED 3 6 3 6 0
OBSCN WILD-TYPE 10 13 5 8 2
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S553.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
OBSCN MUTATED 7 7 4
OBSCN WILD-TYPE 20 6 12
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S554.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
OBSCN MUTATED 2 4 2 6 2 2
OBSCN WILD-TYPE 7 13 5 6 4 3
'IER5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S555.  Gene #72: 'IER5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
IER5 MUTATED 3 0 0 0 0
IER5 WILD-TYPE 18 19 8 8 6
'TNIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S556.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TNIP2 MUTATED 2 1 0 1 1
TNIP2 WILD-TYPE 19 18 8 7 5
'TNIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S557.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TNIP2 MUTATED 1 1 2 0 0
TNIP2 WILD-TYPE 12 7 12 14 7
'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S558.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TNIP2 MUTATED 1 0 2 1
TNIP2 WILD-TYPE 16 8 12 15
'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S559.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TNIP2 MUTATED 1 2 0 1
TNIP2 WILD-TYPE 15 14 5 17
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S560.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TNIP2 MUTATED 2 1 1
TNIP2 WILD-TYPE 24 11 17
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S561.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TNIP2 MUTATED 1 0 1 2 0
TNIP2 WILD-TYPE 12 19 7 12 2
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S562.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TNIP2 MUTATED 2 1 1
TNIP2 WILD-TYPE 25 12 15
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S563.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TNIP2 MUTATED 1 0 0 2 0 1
TNIP2 WILD-TYPE 8 17 7 10 6 4
'NOTCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S564.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NOTCH2 MUTATED 4 1 0 2 0
NOTCH2 WILD-TYPE 17 18 8 6 6
'NOTCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S565.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NOTCH2 MUTATED 1 0 2 2 0
NOTCH2 WILD-TYPE 12 8 12 12 7
'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S566.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NOTCH2 MUTATED 3 1 1 0
NOTCH2 WILD-TYPE 14 7 13 16
'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 1

Table S567.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NOTCH2 MUTATED 1 2 2 0
NOTCH2 WILD-TYPE 15 14 3 18

Figure S43.  Get High-res Image Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00835 (Fisher's exact test), Q value = 1

Table S568.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NOTCH2 MUTATED 1 4 0
NOTCH2 WILD-TYPE 25 8 18

Figure S44.  Get High-res Image Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S569.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NOTCH2 MUTATED 0 2 0 3 0
NOTCH2 WILD-TYPE 13 17 8 11 2
'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00893 (Fisher's exact test), Q value = 1

Table S570.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NOTCH2 MUTATED 1 4 0
NOTCH2 WILD-TYPE 26 9 16

Figure S45.  Get High-res Image Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S571.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NOTCH2 MUTATED 0 1 0 3 1 0
NOTCH2 WILD-TYPE 9 16 7 9 5 5
'RASIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S572.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RASIP1 MUTATED 3 2 2 0 0
RASIP1 WILD-TYPE 18 17 6 8 6
'RASIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S573.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RASIP1 MUTATED 2 2 2 1 0
RASIP1 WILD-TYPE 11 6 12 13 7
'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S574.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RASIP1 MUTATED 3 3 1 0
RASIP1 WILD-TYPE 14 5 13 16

Figure S46.  Get High-res Image Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S575.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RASIP1 MUTATED 3 3 1 0
RASIP1 WILD-TYPE 13 13 4 18
'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 1

Table S576.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RASIP1 MUTATED 3 4 0
RASIP1 WILD-TYPE 23 8 18

Figure S47.  Get High-res Image Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S577.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RASIP1 MUTATED 1 3 0 3 0
RASIP1 WILD-TYPE 12 16 8 11 2
'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 1

Table S578.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RASIP1 MUTATED 3 4 0
RASIP1 WILD-TYPE 24 9 16

Figure S48.  Get High-res Image Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S579.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RASIP1 MUTATED 1 2 0 3 1 0
RASIP1 WILD-TYPE 8 15 7 9 5 5
'NMU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S580.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NMU MUTATED 1 2 1 0 0
NMU WILD-TYPE 20 17 7 8 6
'NMU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S581.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NMU MUTATED 1 1 1 1 0
NMU WILD-TYPE 12 7 13 13 7
'NMU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 1

Table S582.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NMU MUTATED 0 2 0 1
NMU WILD-TYPE 17 6 14 15

Figure S49.  Get High-res Image Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NMU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S583.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NMU MUTATED 0 2 0 1
NMU WILD-TYPE 16 14 5 17
'NMU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S584.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NMU MUTATED 2 1 1
NMU WILD-TYPE 24 11 17
'NMU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S585.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NMU MUTATED 2 2 0 0 0
NMU WILD-TYPE 11 17 8 14 2
'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S586.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NMU MUTATED 2 1 1
NMU WILD-TYPE 25 12 15
'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S587.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NMU MUTATED 2 2 0 0 0 0
NMU WILD-TYPE 7 15 7 12 6 5
'VARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S588.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
VARS MUTATED 1 2 1 2 0
VARS WILD-TYPE 20 17 7 6 6
'VARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S589.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
VARS MUTATED 0 1 3 2 0
VARS WILD-TYPE 13 7 11 12 7
'VARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S590.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
VARS MUTATED 1 0 4 1
VARS WILD-TYPE 16 8 10 15
'VARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0818 (Fisher's exact test), Q value = 1

Table S591.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
VARS MUTATED 0 4 1 1
VARS WILD-TYPE 16 12 4 17
'VARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S592.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
VARS MUTATED 2 2 2
VARS WILD-TYPE 24 10 16
'VARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S593.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
VARS MUTATED 2 2 0 2 0
VARS WILD-TYPE 11 17 8 12 2
'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S594.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
VARS MUTATED 2 3 1
VARS WILD-TYPE 25 10 15
'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S595.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
VARS MUTATED 2 2 0 2 0 0
VARS WILD-TYPE 7 15 7 10 6 5
'SHOX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S596.  Gene #78: 'SHOX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SHOX2 MUTATED 2 0 0 0 1
SHOX2 WILD-TYPE 19 19 8 8 5
'HSD17B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S597.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HSD17B1 MUTATED 2 2 0 0 0
HSD17B1 WILD-TYPE 19 17 8 8 6
'HSD17B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S598.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
HSD17B1 MUTATED 0 0 0 3 1
HSD17B1 WILD-TYPE 13 8 14 11 6
'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S599.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
HSD17B1 MUTATED 2 0 1 1
HSD17B1 WILD-TYPE 15 8 13 15
'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S600.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
HSD17B1 MUTATED 0 0 2 2
HSD17B1 WILD-TYPE 16 16 3 16

Figure S50.  Get High-res Image Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S601.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
HSD17B1 MUTATED 2 1 1
HSD17B1 WILD-TYPE 24 11 17
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S602.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
HSD17B1 MUTATED 1 1 0 2 0
HSD17B1 WILD-TYPE 12 18 8 12 2
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S603.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
HSD17B1 MUTATED 2 1 1
HSD17B1 WILD-TYPE 25 12 15
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S604.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
HSD17B1 MUTATED 0 1 1 1 1 0
HSD17B1 WILD-TYPE 9 16 6 11 5 5
'COQ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S605.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
COQ2 MUTATED 1 1 0 2 1
COQ2 WILD-TYPE 20 18 8 6 5
'COQ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S606.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
COQ2 MUTATED 0 1 1 1 1
COQ2 WILD-TYPE 13 7 13 13 6
'COQ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S607.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
COQ2 MUTATED 0 1 2 1
COQ2 WILD-TYPE 17 7 12 15
'COQ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S608.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
COQ2 MUTATED 0 2 0 2
COQ2 WILD-TYPE 16 14 5 16
'COQ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S609.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
COQ2 MUTATED 2 1 1
COQ2 WILD-TYPE 24 11 17
'COQ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S610.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
COQ2 MUTATED 1 2 1 0 0
COQ2 WILD-TYPE 12 17 7 14 2
'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S611.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
COQ2 MUTATED 2 1 1
COQ2 WILD-TYPE 25 12 15
'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S612.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
COQ2 MUTATED 1 2 1 0 0 0
COQ2 WILD-TYPE 8 15 6 12 6 5
'KNDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S613.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KNDC1 MUTATED 2 4 2 1 1
KNDC1 WILD-TYPE 19 15 6 7 5
'KNDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S614.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KNDC1 MUTATED 0 2 2 2 3
KNDC1 WILD-TYPE 13 6 12 12 4
'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S615.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KNDC1 MUTATED 1 3 1 4
KNDC1 WILD-TYPE 16 5 13 12
'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S616.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KNDC1 MUTATED 1 2 1 5
KNDC1 WILD-TYPE 15 14 4 13
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S617.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KNDC1 MUTATED 2 3 4
KNDC1 WILD-TYPE 24 9 14
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S618.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KNDC1 MUTATED 1 4 3 1 0
KNDC1 WILD-TYPE 12 15 5 13 2
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S619.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KNDC1 MUTATED 2 3 4
KNDC1 WILD-TYPE 25 10 12
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S620.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KNDC1 MUTATED 1 3 1 1 1 2
KNDC1 WILD-TYPE 8 14 6 11 5 3
'AR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S621.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
AR MUTATED 2 0 0 1 1
AR WILD-TYPE 19 19 8 7 5
'AR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S622.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
AR MUTATED 2 0 1 0 0
AR WILD-TYPE 11 8 13 14 7
'AR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S623.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
AR MUTATED 2 0 1 0
AR WILD-TYPE 15 8 13 16
'AR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S624.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
AR MUTATED 2 1 0 0
AR WILD-TYPE 14 15 5 18
'AR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S625.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
AR MUTATED 2 1 0
AR WILD-TYPE 24 11 18
'AR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S626.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
AR MUTATED 1 1 0 1 0
AR WILD-TYPE 12 18 8 13 2
'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S627.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
AR MUTATED 2 1 0
AR WILD-TYPE 25 12 16
'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S628.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
AR MUTATED 1 1 0 1 0 0
AR WILD-TYPE 8 16 7 11 6 5
'KCTD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S629.  Gene #83: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KCTD3 MUTATED 1 1 0 2 0
KCTD3 WILD-TYPE 20 18 8 6 6
'FZD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S630.  Gene #84: 'FZD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FZD1 MUTATED 1 0 1 1 0
FZD1 WILD-TYPE 20 19 7 7 6
'ZC3H12D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 1

Table S631.  Gene #85: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZC3H12D MUTATED 0 0 0 3 0
ZC3H12D WILD-TYPE 21 19 8 5 6

Figure S51.  Get High-res Image Gene #85: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRTAP5-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S632.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KRTAP5-5 MUTATED 1 1 1 2 0
KRTAP5-5 WILD-TYPE 20 18 7 6 6
'KRTAP5-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S633.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KRTAP5-5 MUTATED 1 0 1 1 0
KRTAP5-5 WILD-TYPE 12 8 13 13 7
'KRTAP5-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S634.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KRTAP5-5 MUTATED 2 1 0 0
KRTAP5-5 WILD-TYPE 15 7 14 16
'KRTAP5-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S635.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KRTAP5-5 MUTATED 1 1 1 0
KRTAP5-5 WILD-TYPE 15 15 4 18
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S636.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KRTAP5-5 MUTATED 2 1 0
KRTAP5-5 WILD-TYPE 24 11 18
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S637.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KRTAP5-5 MUTATED 0 1 0 1 1
KRTAP5-5 WILD-TYPE 13 18 8 13 1
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S638.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KRTAP5-5 MUTATED 2 1 0
KRTAP5-5 WILD-TYPE 25 12 16
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 1

Table S639.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KRTAP5-5 MUTATED 0 0 0 1 2 0
KRTAP5-5 WILD-TYPE 9 17 7 11 4 5
'AKAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 1

Table S640.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
AKAP2 MUTATED 1 0 0 2 1
AKAP2 WILD-TYPE 20 19 8 6 5
'AKAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S641.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
AKAP2 MUTATED 0 0 2 2 0
AKAP2 WILD-TYPE 13 8 12 12 7
'AKAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S642.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
AKAP2 MUTATED 1 0 2 1
AKAP2 WILD-TYPE 16 8 12 15
'AKAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S643.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
AKAP2 MUTATED 0 2 1 1
AKAP2 WILD-TYPE 16 14 4 17
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S644.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
AKAP2 MUTATED 1 1 2
AKAP2 WILD-TYPE 25 11 16
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S645.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
AKAP2 MUTATED 1 3 0 0 0
AKAP2 WILD-TYPE 12 16 8 14 2
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S646.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
AKAP2 MUTATED 1 2 1
AKAP2 WILD-TYPE 26 11 15
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S647.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
AKAP2 MUTATED 1 2 0 0 1 0
AKAP2 WILD-TYPE 8 15 7 12 5 5
'KBTBD13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S648.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KBTBD13 MUTATED 5 3 0 1 0
KBTBD13 WILD-TYPE 16 16 8 7 6
'KBTBD13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S649.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KBTBD13 MUTATED 3 1 0 2 3
KBTBD13 WILD-TYPE 10 7 14 12 4
'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S650.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KBTBD13 MUTATED 4 1 1 3
KBTBD13 WILD-TYPE 13 7 13 13
'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S651.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KBTBD13 MUTATED 4 0 1 4
KBTBD13 WILD-TYPE 12 16 4 14
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S652.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KBTBD13 MUTATED 4 2 3
KBTBD13 WILD-TYPE 22 10 15
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S653.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KBTBD13 MUTATED 0 4 2 3 0
KBTBD13 WILD-TYPE 13 15 6 11 2
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S654.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KBTBD13 MUTATED 4 2 3
KBTBD13 WILD-TYPE 23 11 13
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S655.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KBTBD13 MUTATED 0 4 1 2 1 1
KBTBD13 WILD-TYPE 9 13 6 10 5 4
'SPIRE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S656.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SPIRE2 MUTATED 0 1 1 1 0
SPIRE2 WILD-TYPE 21 18 7 7 6
'SPIRE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 1

Table S657.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SPIRE2 MUTATED 1 0 0 0 2
SPIRE2 WILD-TYPE 12 8 14 14 5

Figure S52.  Get High-res Image Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPIRE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S658.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SPIRE2 MUTATED 1 0 1 1
SPIRE2 WILD-TYPE 16 8 13 15
'SPIRE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S659.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SPIRE2 MUTATED 1 0 0 2
SPIRE2 WILD-TYPE 15 16 5 16
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S660.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SPIRE2 MUTATED 2 0 1
SPIRE2 WILD-TYPE 24 12 17
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S661.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SPIRE2 MUTATED 0 1 1 1 0
SPIRE2 WILD-TYPE 13 18 7 13 2
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S662.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SPIRE2 MUTATED 2 0 1
SPIRE2 WILD-TYPE 25 13 15
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S663.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SPIRE2 MUTATED 0 1 1 1 0 0
SPIRE2 WILD-TYPE 9 16 6 11 6 5
'NPTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S664.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NPTX1 MUTATED 2 0 0 0 1
NPTX1 WILD-TYPE 19 19 8 8 5
'NPTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S665.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NPTX1 MUTATED 1 0 1 1 0
NPTX1 WILD-TYPE 12 8 13 13 7
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S666.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NPTX1 MUTATED 1 0 1 1
NPTX1 WILD-TYPE 16 8 13 15
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S667.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NPTX1 MUTATED 1 0 0 2
NPTX1 WILD-TYPE 15 16 5 16
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S668.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NPTX1 MUTATED 1 0 2
NPTX1 WILD-TYPE 25 12 16
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S669.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NPTX1 MUTATED 0 1 1 1 0
NPTX1 WILD-TYPE 13 18 7 13 2
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S670.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NPTX1 MUTATED 1 0 2
NPTX1 WILD-TYPE 26 13 14
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S671.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NPTX1 MUTATED 0 1 0 1 0 1
NPTX1 WILD-TYPE 9 16 7 11 6 4
'ADAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S672.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ADAD2 MUTATED 1 0 1 1 1
ADAD2 WILD-TYPE 20 19 7 7 5
'ADAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S673.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ADAD2 MUTATED 0 0 2 1 1
ADAD2 WILD-TYPE 13 8 12 13 6
'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S674.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ADAD2 MUTATED 1 0 2 1
ADAD2 WILD-TYPE 16 8 12 15
'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S675.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ADAD2 MUTATED 0 2 1 1
ADAD2 WILD-TYPE 16 14 4 17
'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 1

Table S676.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ADAD2 MUTATED 0 3 1
ADAD2 WILD-TYPE 26 9 17

Figure S53.  Get High-res Image Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S677.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ADAD2 MUTATED 0 3 0 1 0
ADAD2 WILD-TYPE 13 16 8 13 2
'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 1

Table S678.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ADAD2 MUTATED 0 3 1
ADAD2 WILD-TYPE 27 10 15

Figure S54.  Get High-res Image Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S679.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ADAD2 MUTATED 0 2 0 1 1 0
ADAD2 WILD-TYPE 9 15 7 11 5 5
'SEZ6L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S680.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SEZ6L2 MUTATED 3 3 0 0 2
SEZ6L2 WILD-TYPE 18 16 8 8 4
'SEZ6L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S681.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SEZ6L2 MUTATED 2 2 1 1 0
SEZ6L2 WILD-TYPE 11 6 13 13 7
'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S682.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SEZ6L2 MUTATED 2 0 2 2
SEZ6L2 WILD-TYPE 15 8 12 14
'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S683.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SEZ6L2 MUTATED 2 2 0 2
SEZ6L2 WILD-TYPE 14 14 5 16
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S684.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SEZ6L2 MUTATED 4 0 2
SEZ6L2 WILD-TYPE 22 12 16
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S685.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SEZ6L2 MUTATED 1 1 2 2 0
SEZ6L2 WILD-TYPE 12 18 6 12 2
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S686.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SEZ6L2 MUTATED 4 0 2
SEZ6L2 WILD-TYPE 23 13 14
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S687.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SEZ6L2 MUTATED 1 1 1 2 0 1
SEZ6L2 WILD-TYPE 8 16 6 10 6 4
'NEFH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 1

Table S688.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NEFH MUTATED 6 0 1 0 0
NEFH WILD-TYPE 15 19 7 8 6

Figure S55.  Get High-res Image Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NEFH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S689.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NEFH MUTATED 3 0 0 2 0
NEFH WILD-TYPE 10 8 14 12 7
'NEFH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 1

Table S690.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NEFH MUTATED 4 0 0 0
NEFH WILD-TYPE 13 8 14 16

Figure S56.  Get High-res Image Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NEFH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00825 (Fisher's exact test), Q value = 1

Table S691.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NEFH MUTATED 2 0 2 0
NEFH WILD-TYPE 14 16 3 18

Figure S57.  Get High-res Image Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NEFH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S692.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NEFH MUTATED 3 2 0
NEFH WILD-TYPE 23 10 18
'NEFH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S693.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NEFH MUTATED 1 1 0 3 0
NEFH WILD-TYPE 12 18 8 11 2
'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S694.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NEFH MUTATED 3 2 0
NEFH WILD-TYPE 24 11 16
'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S695.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NEFH MUTATED 1 0 0 3 1 0
NEFH WILD-TYPE 8 17 7 9 5 5
'DLEU7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S696.  Gene #94: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
DLEU7 MUTATED 2 0 1 0 0
DLEU7 WILD-TYPE 19 19 7 8 6
'AMDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 1

Table S697.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
AMDHD1 MUTATED 3 2 1 5 0
AMDHD1 WILD-TYPE 18 17 7 3 6

Figure S58.  Get High-res Image Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AMDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S698.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
AMDHD1 MUTATED 1 1 4 2 1
AMDHD1 WILD-TYPE 12 7 10 12 6
'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S699.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
AMDHD1 MUTATED 3 2 3 1
AMDHD1 WILD-TYPE 14 6 11 15
'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S700.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
AMDHD1 MUTATED 1 4 2 2
AMDHD1 WILD-TYPE 15 12 3 16
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S701.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
AMDHD1 MUTATED 3 4 2
AMDHD1 WILD-TYPE 23 8 16
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S702.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
AMDHD1 MUTATED 1 4 1 3 0
AMDHD1 WILD-TYPE 12 15 7 11 2
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0625 (Fisher's exact test), Q value = 1

Table S703.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
AMDHD1 MUTATED 3 5 1
AMDHD1 WILD-TYPE 24 8 15
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S704.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
AMDHD1 MUTATED 1 3 1 3 1 0
AMDHD1 WILD-TYPE 8 14 6 9 5 5
'GLTSCR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S705.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GLTSCR2 MUTATED 4 0 0 1 0
GLTSCR2 WILD-TYPE 17 19 8 7 6
'GLTSCR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S706.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GLTSCR2 MUTATED 2 0 1 1 0
GLTSCR2 WILD-TYPE 11 8 13 13 7
'GLTSCR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S707.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GLTSCR2 MUTATED 3 0 1 0
GLTSCR2 WILD-TYPE 14 8 13 16
'GLTSCR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S708.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GLTSCR2 MUTATED 2 1 1 0
GLTSCR2 WILD-TYPE 14 15 4 18
'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S709.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GLTSCR2 MUTATED 2 1 1
GLTSCR2 WILD-TYPE 24 11 17
'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S710.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GLTSCR2 MUTATED 0 2 0 2 0
GLTSCR2 WILD-TYPE 13 17 8 12 2
'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S711.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GLTSCR2 MUTATED 2 2 0
GLTSCR2 WILD-TYPE 25 11 16
'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S712.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GLTSCR2 MUTATED 0 1 0 2 1 0
GLTSCR2 WILD-TYPE 9 16 7 10 5 5
'PLEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S713.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PLEC MUTATED 5 6 1 1 0
PLEC WILD-TYPE 16 13 7 7 6
'PLEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S714.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PLEC MUTATED 2 2 1 3 2
PLEC WILD-TYPE 11 6 13 11 5
'PLEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S715.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PLEC MUTATED 2 0 5 3
PLEC WILD-TYPE 15 8 9 13
'PLEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S716.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PLEC MUTATED 2 4 0 4
PLEC WILD-TYPE 14 12 5 14
'PLEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S717.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PLEC MUTATED 6 2 2
PLEC WILD-TYPE 20 10 16
'PLEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S718.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PLEC MUTATED 4 2 2 2 0
PLEC WILD-TYPE 9 17 6 12 2
'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S719.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PLEC MUTATED 7 1 2
PLEC WILD-TYPE 20 12 14
'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S720.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PLEC MUTATED 2 2 3 2 0 1
PLEC WILD-TYPE 7 15 4 10 6 4
'MAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S721.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MAP7 MUTATED 2 1 0 0 0
MAP7 WILD-TYPE 19 18 8 8 6
'MAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S722.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MAP7 MUTATED 1 0 0 1 1
MAP7 WILD-TYPE 12 8 14 13 6
'MAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S723.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MAP7 MUTATED 1 0 1 1
MAP7 WILD-TYPE 16 8 13 15
'MAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S724.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MAP7 MUTATED 1 0 0 2
MAP7 WILD-TYPE 15 16 5 16
'MAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S725.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MAP7 MUTATED 1 0 2
MAP7 WILD-TYPE 25 12 16
'MAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S726.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MAP7 MUTATED 0 1 1 1 0
MAP7 WILD-TYPE 13 18 7 13 2
'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S727.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MAP7 MUTATED 1 0 2
MAP7 WILD-TYPE 26 13 14
'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S728.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MAP7 MUTATED 0 1 0 1 0 1
MAP7 WILD-TYPE 9 16 7 11 6 4
'DSPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S729.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
DSPP MUTATED 4 4 1 1 0
DSPP WILD-TYPE 17 15 7 7 6
'DSPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 1

Table S730.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
DSPP MUTATED 1 4 1 3 0
DSPP WILD-TYPE 12 4 13 11 7
'DSPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S731.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
DSPP MUTATED 3 1 2 3
DSPP WILD-TYPE 14 7 12 13
'DSPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S732.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
DSPP MUTATED 4 1 1 3
DSPP WILD-TYPE 12 15 4 15
'DSPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S733.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
DSPP MUTATED 3 3 3
DSPP WILD-TYPE 23 9 15
'DSPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S734.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
DSPP MUTATED 1 4 1 2 1
DSPP WILD-TYPE 12 15 7 12 1
'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S735.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
DSPP MUTATED 3 4 2
DSPP WILD-TYPE 24 9 14
'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S736.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
DSPP MUTATED 1 3 1 1 3 0
DSPP WILD-TYPE 8 14 6 11 3 5
'CRIPAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S737.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CRIPAK MUTATED 1 4 1 3 1
CRIPAK WILD-TYPE 20 15 7 5 5
'CRIPAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S738.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CRIPAK MUTATED 2 1 2 2 2
CRIPAK WILD-TYPE 11 7 12 12 5
'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S739.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CRIPAK MUTATED 2 0 3 4
CRIPAK WILD-TYPE 15 8 11 12
'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S740.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CRIPAK MUTATED 2 2 1 4
CRIPAK WILD-TYPE 14 14 4 14
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S741.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CRIPAK MUTATED 5 1 3
CRIPAK WILD-TYPE 21 11 15
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S742.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CRIPAK MUTATED 1 4 3 1 0
CRIPAK WILD-TYPE 12 15 5 13 2
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S743.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CRIPAK MUTATED 5 1 3
CRIPAK WILD-TYPE 22 12 13
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S744.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CRIPAK MUTATED 1 4 3 1 0 0
CRIPAK WILD-TYPE 8 13 4 11 6 5
'PRKAR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S745.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PRKAR1A MUTATED 2 1 1 2 0
PRKAR1A WILD-TYPE 19 18 7 6 6
'PRKAR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S746.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PRKAR1A MUTATED 1 1 2 1 1
PRKAR1A WILD-TYPE 12 7 12 13 6
'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S747.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PRKAR1A MUTATED 2 1 3 0
PRKAR1A WILD-TYPE 15 7 11 16
'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S748.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PRKAR1A MUTATED 1 3 1 1
PRKAR1A WILD-TYPE 15 13 4 17
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0865 (Fisher's exact test), Q value = 1

Table S749.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PRKAR1A MUTATED 5 1 0
PRKAR1A WILD-TYPE 21 11 18
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S750.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PRKAR1A MUTATED 3 1 1 1 0
PRKAR1A WILD-TYPE 10 18 7 13 2
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S751.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PRKAR1A MUTATED 5 1 0
PRKAR1A WILD-TYPE 22 12 16
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S752.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PRKAR1A MUTATED 3 1 1 0 1 0
PRKAR1A WILD-TYPE 6 16 6 12 5 5
'CYP4A22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S753.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CYP4A22 MUTATED 1 0 2 1 0
CYP4A22 WILD-TYPE 20 19 6 7 6
'CYP4A22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S754.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CYP4A22 MUTATED 1 1 2 0 0
CYP4A22 WILD-TYPE 12 7 12 14 7
'CYP4A22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S755.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CYP4A22 MUTATED 1 2 1 0
CYP4A22 WILD-TYPE 16 6 13 16
'CYP4A22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S756.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CYP4A22 MUTATED 2 2 0 0
CYP4A22 WILD-TYPE 14 14 5 18
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S757.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CYP4A22 MUTATED 2 2 0
CYP4A22 WILD-TYPE 24 10 18
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S758.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CYP4A22 MUTATED 0 2 0 1 1
CYP4A22 WILD-TYPE 13 17 8 13 1
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S759.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CYP4A22 MUTATED 2 2 0
CYP4A22 WILD-TYPE 25 11 16
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S760.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CYP4A22 MUTATED 0 2 0 1 1 0
CYP4A22 WILD-TYPE 9 15 7 11 5 5
'NOM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S761.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NOM1 MUTATED 2 2 1 1 0
NOM1 WILD-TYPE 19 17 7 7 6
'NOM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S762.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NOM1 MUTATED 1 1 1 0 2
NOM1 WILD-TYPE 12 7 13 14 5
'NOM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S763.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NOM1 MUTATED 2 0 1 2
NOM1 WILD-TYPE 15 8 13 14
'NOM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S764.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NOM1 MUTATED 2 1 0 2
NOM1 WILD-TYPE 14 15 5 16
'NOM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S765.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NOM1 MUTATED 2 1 2
NOM1 WILD-TYPE 24 11 16
'NOM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S766.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NOM1 MUTATED 2 1 1 1 0
NOM1 WILD-TYPE 11 18 7 13 2
'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S767.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NOM1 MUTATED 2 1 2
NOM1 WILD-TYPE 25 12 14
'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S768.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NOM1 MUTATED 2 1 0 0 1 1
NOM1 WILD-TYPE 7 16 7 12 5 4
'RNF135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S769.  Gene #104: 'RNF135 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RNF135 MUTATED 1 2 0 0 0
RNF135 WILD-TYPE 20 17 8 8 6
'C12ORF65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S770.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C12ORF65 MUTATED 3 0 0 0 0
C12ORF65 WILD-TYPE 18 19 8 8 6
'C12ORF65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 1

Table S771.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C12ORF65 MUTATED 3 0 0 0 0
C12ORF65 WILD-TYPE 10 8 14 14 7

Figure S59.  Get High-res Image Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C12ORF65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S772.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C12ORF65 MUTATED 3 0 0 0
C12ORF65 WILD-TYPE 14 8 14 16
'C12ORF65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 1

Table S773.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C12ORF65 MUTATED 3 0 0 0
C12ORF65 WILD-TYPE 13 16 5 18
'C12ORF65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S774.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C12ORF65 MUTATED 2 1 0
C12ORF65 WILD-TYPE 24 11 18
'C12ORF65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S775.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C12ORF65 MUTATED 0 1 0 2 0
C12ORF65 WILD-TYPE 13 18 8 12 2
'C12ORF65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S776.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C12ORF65 MUTATED 2 1 0
C12ORF65 WILD-TYPE 25 12 16
'C12ORF65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S777.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C12ORF65 MUTATED 0 1 0 2 0 0
C12ORF65 WILD-TYPE 9 16 7 10 6 5
'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S778.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HLA-B MUTATED 1 1 1 2 1
HLA-B WILD-TYPE 20 18 7 6 5
'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S779.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
HLA-B MUTATED 2 0 2 2 0
HLA-B WILD-TYPE 11 8 12 12 7
'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S780.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
HLA-B MUTATED 2 0 2 2
HLA-B WILD-TYPE 15 8 12 14
'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S781.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
HLA-B MUTATED 2 2 0 2
HLA-B WILD-TYPE 14 14 5 16
'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S782.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
HLA-B MUTATED 2 1 3
HLA-B WILD-TYPE 24 11 15
'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S783.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
HLA-B MUTATED 3 3 0 0 0
HLA-B WILD-TYPE 10 16 8 14 2
'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S784.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
HLA-B MUTATED 2 1 3
HLA-B WILD-TYPE 25 12 13
'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S785.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
HLA-B MUTATED 2 3 0 0 0 1
HLA-B WILD-TYPE 7 14 7 12 6 4
'CSGALNACT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S786.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CSGALNACT2 MUTATED 1 2 0 0 0
CSGALNACT2 WILD-TYPE 20 17 8 8 6
'CSGALNACT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S787.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CSGALNACT2 MUTATED 1 0 0 0 2
CSGALNACT2 WILD-TYPE 12 8 14 14 5

Figure S60.  Get High-res Image Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S788.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CSGALNACT2 MUTATED 1 0 0 2
CSGALNACT2 WILD-TYPE 16 8 14 14
'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S789.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CSGALNACT2 MUTATED 1 0 0 2
CSGALNACT2 WILD-TYPE 15 16 5 16
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S790.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CSGALNACT2 MUTATED 1 0 2
CSGALNACT2 WILD-TYPE 25 12 16
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S791.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CSGALNACT2 MUTATED 0 2 0 1 0
CSGALNACT2 WILD-TYPE 13 17 8 13 2
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S792.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CSGALNACT2 MUTATED 1 0 2
CSGALNACT2 WILD-TYPE 26 13 14
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S793.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CSGALNACT2 MUTATED 0 2 0 1 0 0
CSGALNACT2 WILD-TYPE 9 15 7 11 6 5
'UQCRFS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S794.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
UQCRFS1 MUTATED 1 1 1 0 1
UQCRFS1 WILD-TYPE 20 18 7 8 5
'UQCRFS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S795.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
UQCRFS1 MUTATED 2 1 2 0 0
UQCRFS1 WILD-TYPE 11 7 12 14 7
'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S796.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
UQCRFS1 MUTATED 1 1 1 1
UQCRFS1 WILD-TYPE 16 7 13 15
'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S797.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
UQCRFS1 MUTATED 1 2 0 1
UQCRFS1 WILD-TYPE 15 14 5 17
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S798.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
UQCRFS1 MUTATED 4 0 1
UQCRFS1 WILD-TYPE 22 12 17
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S799.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
UQCRFS1 MUTATED 3 0 1 1 0
UQCRFS1 WILD-TYPE 10 19 7 13 2
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S800.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
UQCRFS1 MUTATED 4 0 1
UQCRFS1 WILD-TYPE 23 13 15
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 1

Table S801.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
UQCRFS1 MUTATED 3 0 0 1 0 1
UQCRFS1 WILD-TYPE 6 17 7 11 6 4
'PDCD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S802.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PDCD6 MUTATED 0 1 1 1 0
PDCD6 WILD-TYPE 21 18 7 7 6
'PDCD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S803.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PDCD6 MUTATED 1 0 0 1 1
PDCD6 WILD-TYPE 12 8 14 13 6
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S804.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PDCD6 MUTATED 2 0 1
PDCD6 WILD-TYPE 24 12 17
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S805.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PDCD6 MUTATED 1 1 1 0 0
PDCD6 WILD-TYPE 12 18 7 14 2
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S806.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PDCD6 MUTATED 2 0 1
PDCD6 WILD-TYPE 25 13 15
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S807.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PDCD6 MUTATED 1 1 1 0 0 0
PDCD6 WILD-TYPE 8 16 6 12 6 5
'PTX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S808.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PTX4 MUTATED 2 0 0 1 0
PTX4 WILD-TYPE 19 19 8 7 6
'PTX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S809.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PTX4 MUTATED 1 0 1 1 0
PTX4 WILD-TYPE 12 8 13 13 7
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S810.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PTX4 MUTATED 2 0 1 0
PTX4 WILD-TYPE 15 8 13 16
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S811.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PTX4 MUTATED 1 1 1 0
PTX4 WILD-TYPE 15 15 4 18
'PTX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S812.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PTX4 MUTATED 2 1 0
PTX4 WILD-TYPE 24 11 18
'PTX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S813.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PTX4 MUTATED 1 1 0 1 0
PTX4 WILD-TYPE 12 18 8 13 2
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S814.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PTX4 MUTATED 2 1 0
PTX4 WILD-TYPE 25 12 16
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S815.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PTX4 MUTATED 1 0 0 1 1 0
PTX4 WILD-TYPE 8 17 7 11 5 5
'SGK223 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S816.  Gene #111: 'SGK223 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SGK223 MUTATED 1 2 0 0 0
SGK223 WILD-TYPE 20 17 8 8 6
'POLRMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S817.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
POLRMT MUTATED 1 1 0 1 1
POLRMT WILD-TYPE 20 18 8 7 5
'POLRMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 1

Table S818.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
POLRMT MUTATED 0 0 0 2 2
POLRMT WILD-TYPE 13 8 14 12 5

Figure S61.  Get High-res Image Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POLRMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S819.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
POLRMT MUTATED 0 0 2 2
POLRMT WILD-TYPE 17 8 12 14
'POLRMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 1

Table S820.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
POLRMT MUTATED 0 0 0 4
POLRMT WILD-TYPE 16 16 5 14
'POLRMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S821.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
POLRMT MUTATED 1 0 3
POLRMT WILD-TYPE 25 12 15
'POLRMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S822.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
POLRMT MUTATED 0 3 1 0 0
POLRMT WILD-TYPE 13 16 7 14 2
'POLRMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S823.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
POLRMT MUTATED 1 0 3
POLRMT WILD-TYPE 26 13 13
'POLRMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S824.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
POLRMT MUTATED 0 3 1 0 0 0
POLRMT WILD-TYPE 9 14 6 12 6 5
'CACNA1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S825.  Gene #113: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CACNA1D MUTATED 2 0 0 1 0
CACNA1D WILD-TYPE 19 19 8 7 6
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S826.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NF1 MUTATED 3 1 0 3 0
NF1 WILD-TYPE 18 18 8 5 6
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S827.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NF1 MUTATED 2 0 2 2 1
NF1 WILD-TYPE 11 8 12 12 6
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S828.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NF1 MUTATED 4 0 2 1
NF1 WILD-TYPE 13 8 12 15
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S829.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NF1 MUTATED 2 2 2 1
NF1 WILD-TYPE 14 14 3 17
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S830.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NF1 MUTATED 2 3 2
NF1 WILD-TYPE 24 9 16
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S831.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NF1 MUTATED 1 2 1 3 0
NF1 WILD-TYPE 12 17 7 11 2
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 1

Table S832.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NF1 MUTATED 2 4 1
NF1 WILD-TYPE 25 9 15
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S833.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NF1 MUTATED 1 1 0 3 1 1
NF1 WILD-TYPE 8 16 7 9 5 4
'RGMB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S834.  Gene #115: 'RGMB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RGMB MUTATED 2 2 2 0 0
RGMB WILD-TYPE 19 17 6 8 6
'ADAMTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S835.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ADAMTS7 MUTATED 0 3 0 0 1
ADAMTS7 WILD-TYPE 21 16 8 8 5
'ADAMTS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S836.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ADAMTS7 MUTATED 0 0 1 2 1
ADAMTS7 WILD-TYPE 13 8 13 12 6
'ADAMTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 1

Table S837.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ADAMTS7 MUTATED 0 1 0 3
ADAMTS7 WILD-TYPE 17 7 14 13
'ADAMTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S838.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ADAMTS7 MUTATED 0 1 0 3
ADAMTS7 WILD-TYPE 16 15 5 15
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 1

Table S839.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ADAMTS7 MUTATED 0 1 3
ADAMTS7 WILD-TYPE 26 11 15
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S840.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ADAMTS7 MUTATED 0 3 1 0 0
ADAMTS7 WILD-TYPE 13 16 7 14 2
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 1

Table S841.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ADAMTS7 MUTATED 0 1 3
ADAMTS7 WILD-TYPE 27 12 13

Figure S62.  Get High-res Image Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S842.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ADAMTS7 MUTATED 0 3 0 0 0 1
ADAMTS7 WILD-TYPE 9 14 7 12 6 4
'CLIC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S843.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CLIC6 MUTATED 3 2 0 1 0
CLIC6 WILD-TYPE 18 17 8 7 6
'CLIC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S844.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CLIC6 MUTATED 1 1 1 1 0
CLIC6 WILD-TYPE 12 7 13 13 7
'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S845.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CLIC6 MUTATED 2 1 0 1
CLIC6 WILD-TYPE 15 7 14 15
'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S846.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CLIC6 MUTATED 2 1 1 0
CLIC6 WILD-TYPE 14 15 4 18
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S847.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CLIC6 MUTATED 2 2 0
CLIC6 WILD-TYPE 24 10 18
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S848.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CLIC6 MUTATED 0 1 1 2 0
CLIC6 WILD-TYPE 13 18 7 12 2
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S849.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CLIC6 MUTATED 2 2 0
CLIC6 WILD-TYPE 25 11 16
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S850.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CLIC6 MUTATED 0 1 1 1 1 0
CLIC6 WILD-TYPE 9 16 6 11 5 5
'EMR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S851.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
EMR2 MUTATED 0 2 1 1 0
EMR2 WILD-TYPE 21 17 7 7 6
'EMR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S852.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
EMR2 MUTATED 0 0 3 1 0
EMR2 WILD-TYPE 13 8 11 13 7
'EMR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S853.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
EMR2 MUTATED 0 1 1 2
EMR2 WILD-TYPE 17 7 13 14
'EMR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S854.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
EMR2 MUTATED 0 2 0 2
EMR2 WILD-TYPE 16 14 5 16
'EMR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S855.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
EMR2 MUTATED 1 1 2
EMR2 WILD-TYPE 25 11 16
'EMR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S856.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
EMR2 MUTATED 0 2 0 1 1
EMR2 WILD-TYPE 13 17 8 13 1
'EMR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S857.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
EMR2 MUTATED 1 1 2
EMR2 WILD-TYPE 26 12 14
'EMR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S858.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
EMR2 MUTATED 0 2 0 1 1 0
EMR2 WILD-TYPE 9 15 7 11 5 5
'PCDHB13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S859.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PCDHB13 MUTATED 1 1 1 1 1
PCDHB13 WILD-TYPE 20 18 7 7 5
'PCDHB13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S860.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PCDHB13 MUTATED 0 1 3 0 0
PCDHB13 WILD-TYPE 13 7 11 14 7
'PCDHB13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S861.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PCDHB13 MUTATED 0 0 3 1
PCDHB13 WILD-TYPE 17 8 11 15
'PCDHB13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S862.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PCDHB13 MUTATED 0 3 0 1
PCDHB13 WILD-TYPE 16 13 5 17
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S863.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PCDHB13 MUTATED 3 0 1
PCDHB13 WILD-TYPE 23 12 17
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 1

Table S864.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PCDHB13 MUTATED 3 0 1 0 0
PCDHB13 WILD-TYPE 10 19 7 14 2
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S865.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PCDHB13 MUTATED 3 0 1
PCDHB13 WILD-TYPE 24 13 15
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 1

Table S866.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PCDHB13 MUTATED 3 0 0 0 0 1
PCDHB13 WILD-TYPE 6 17 7 12 6 4

Figure S63.  Get High-res Image Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MTFMT MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S867.  Gene #120: 'MTFMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MTFMT MUTATED 2 1 0 0 0
MTFMT WILD-TYPE 19 18 8 8 6
'SPTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S868.  Gene #121: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SPTAN1 MUTATED 1 0 0 1 1
SPTAN1 WILD-TYPE 20 19 8 7 5
'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S869.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HLA-A MUTATED 2 1 0 0 0
HLA-A WILD-TYPE 19 18 8 8 6
'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S870.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
HLA-A MUTATED 1 0 1 1 0
HLA-A WILD-TYPE 12 8 13 13 7
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S871.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
HLA-A MUTATED 1 1 0 1
HLA-A WILD-TYPE 16 7 14 15
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S872.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
HLA-A MUTATED 1 1 1 0
HLA-A WILD-TYPE 15 15 4 18
'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S873.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
HLA-A MUTATED 2 0 1
HLA-A WILD-TYPE 24 12 17
'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S874.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
HLA-A MUTATED 1 0 1 1 0
HLA-A WILD-TYPE 12 19 7 13 2
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S875.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
HLA-A MUTATED 2 0 1
HLA-A WILD-TYPE 25 13 15
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S876.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
HLA-A MUTATED 0 0 1 1 0 1
HLA-A WILD-TYPE 9 17 6 11 6 4
'ASB16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S877.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ASB16 MUTATED 1 2 1 1 1
ASB16 WILD-TYPE 20 17 7 7 5
'ASB16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S878.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ASB16 MUTATED 1 0 1 1 1
ASB16 WILD-TYPE 12 8 13 13 6
'ASB16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S879.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ASB16 MUTATED 1 1 0 2
ASB16 WILD-TYPE 16 7 14 14
'ASB16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S880.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ASB16 MUTATED 1 2 0 1
ASB16 WILD-TYPE 15 14 5 17
'ASB16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S881.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ASB16 MUTATED 3 0 1
ASB16 WILD-TYPE 23 12 17
'ASB16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S882.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ASB16 MUTATED 2 1 0 1 0
ASB16 WILD-TYPE 11 18 8 13 2
'ASB16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S883.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ASB16 MUTATED 3 0 1
ASB16 WILD-TYPE 24 13 15
'ASB16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S884.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ASB16 MUTATED 1 1 1 1 0 0
ASB16 WILD-TYPE 8 16 6 11 6 5
'GPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S885.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GPRIN2 MUTATED 2 3 2 2 0
GPRIN2 WILD-TYPE 19 16 6 6 6
'GPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S886.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GPRIN2 MUTATED 1 0 4 1 1
GPRIN2 WILD-TYPE 12 8 10 13 6
'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S887.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GPRIN2 MUTATED 1 1 3 2
GPRIN2 WILD-TYPE 16 7 11 14
'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S888.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GPRIN2 MUTATED 1 4 0 2
GPRIN2 WILD-TYPE 15 12 5 16
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S889.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GPRIN2 MUTATED 2 2 3
GPRIN2 WILD-TYPE 24 10 15
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S890.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GPRIN2 MUTATED 1 4 1 1 0
GPRIN2 WILD-TYPE 12 15 7 13 2
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S891.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GPRIN2 MUTATED 2 3 2
GPRIN2 WILD-TYPE 25 10 14
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S892.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GPRIN2 MUTATED 1 4 0 1 0 1
GPRIN2 WILD-TYPE 8 13 7 11 6 4
'HNRNPCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S893.  Gene #125: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HNRNPCL1 MUTATED 2 0 0 0 1
HNRNPCL1 WILD-TYPE 19 19 8 8 5
'BTNL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S894.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
BTNL9 MUTATED 1 1 0 2 0
BTNL9 WILD-TYPE 20 18 8 6 6
'BTNL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 1

Table S895.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
BTNL9 MUTATED 0 0 3 0 0
BTNL9 WILD-TYPE 13 8 11 14 7
'BTNL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S896.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
BTNL9 MUTATED 0 1 2 0
BTNL9 WILD-TYPE 17 7 12 16
'BTNL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 1

Table S897.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
BTNL9 MUTATED 0 3 0 0
BTNL9 WILD-TYPE 16 13 5 18
'BTNL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S898.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
BTNL9 MUTATED 1 2 0
BTNL9 WILD-TYPE 25 10 18
'BTNL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S899.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
BTNL9 MUTATED 1 1 0 1 0
BTNL9 WILD-TYPE 12 18 8 13 2
'BTNL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S900.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
BTNL9 MUTATED 1 2 0
BTNL9 WILD-TYPE 26 11 16
'BTNL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S901.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
BTNL9 MUTATED 1 1 0 1 0 0
BTNL9 WILD-TYPE 8 16 7 11 6 5
'KCNJ11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 1

Table S902.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KCNJ11 MUTATED 0 1 3 0 0
KCNJ11 WILD-TYPE 21 18 5 8 6

Figure S64.  Get High-res Image Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S903.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KCNJ11 MUTATED 1 1 2 0 0
KCNJ11 WILD-TYPE 12 7 12 14 7
'KCNJ11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S904.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KCNJ11 MUTATED 1 1 2 0
KCNJ11 WILD-TYPE 16 7 12 16
'KCNJ11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S905.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KCNJ11 MUTATED 1 3 0 0
KCNJ11 WILD-TYPE 15 13 5 18
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S906.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KCNJ11 MUTATED 4 0 0
KCNJ11 WILD-TYPE 22 12 18
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0498 (Fisher's exact test), Q value = 1

Table S907.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KCNJ11 MUTATED 2 0 0 1 1
KCNJ11 WILD-TYPE 11 19 8 13 1

Figure S65.  Get High-res Image Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S908.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KCNJ11 MUTATED 4 0 0
KCNJ11 WILD-TYPE 23 13 16
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S909.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KCNJ11 MUTATED 2 0 0 1 1 0
KCNJ11 WILD-TYPE 7 17 7 11 5 5
'JMJD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S910.  Gene #128: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
JMJD4 MUTATED 1 1 1 0 0
JMJD4 WILD-TYPE 20 18 7 8 6
'LRRC4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S911.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LRRC4B MUTATED 3 0 2 1 0
LRRC4B WILD-TYPE 18 19 6 7 6
'LRRC4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S912.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LRRC4B MUTATED 4 0 1 1 0
LRRC4B WILD-TYPE 9 8 13 13 7
'LRRC4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 1

Table S913.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LRRC4B MUTATED 5 1 0 0
LRRC4B WILD-TYPE 12 7 14 16

Figure S66.  Get High-res Image Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'LRRC4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S914.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LRRC4B MUTATED 4 1 1 0
LRRC4B WILD-TYPE 12 15 4 18
'LRRC4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S915.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LRRC4B MUTATED 4 2 0
LRRC4B WILD-TYPE 22 10 18
'LRRC4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 1

Table S916.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LRRC4B MUTATED 0 1 0 4 1
LRRC4B WILD-TYPE 13 18 8 10 1

Figure S67.  Get High-res Image Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LRRC4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S917.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LRRC4B MUTATED 5 1 0
LRRC4B WILD-TYPE 22 12 16
'LRRC4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00974 (Fisher's exact test), Q value = 1

Table S918.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LRRC4B MUTATED 0 0 0 4 2 0
LRRC4B WILD-TYPE 9 17 7 8 4 5

Figure S68.  Get High-res Image Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S919.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
OPLAH MUTATED 2 0 1 0 0
OPLAH WILD-TYPE 19 19 7 8 6
'OPLAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S920.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
OPLAH MUTATED 1 1 1 0 0
OPLAH WILD-TYPE 12 7 13 14 7
'OPLAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S921.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
OPLAH MUTATED 2 0 1 0
OPLAH WILD-TYPE 15 8 13 16
'OPLAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S922.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
OPLAH MUTATED 2 1 0 0
OPLAH WILD-TYPE 14 15 5 18
'OPLAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S923.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
OPLAH MUTATED 2 1 0
OPLAH WILD-TYPE 24 11 18
'OPLAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S924.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
OPLAH MUTATED 1 0 0 2 0
OPLAH WILD-TYPE 12 19 8 12 2
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S925.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
OPLAH MUTATED 2 1 0
OPLAH WILD-TYPE 25 12 16
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S926.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
OPLAH MUTATED 1 0 0 1 1 0
OPLAH WILD-TYPE 8 17 7 11 5 5
'BAGE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S927.  Gene #131: 'BAGE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
BAGE2 MUTATED 1 2 0 0 0
BAGE2 WILD-TYPE 20 17 8 8 6
'MADCAM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S928.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MADCAM1 MUTATED 0 2 1 0 0
MADCAM1 WILD-TYPE 21 17 7 8 6
'MADCAM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S929.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MADCAM1 MUTATED 1 0 0 1 1
MADCAM1 WILD-TYPE 12 8 14 13 6
'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S930.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MADCAM1 MUTATED 2 0 1
MADCAM1 WILD-TYPE 24 12 17
'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S931.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MADCAM1 MUTATED 2 0 1 0 0
MADCAM1 WILD-TYPE 11 19 7 14 2
'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S932.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MADCAM1 MUTATED 2 0 1
MADCAM1 WILD-TYPE 25 13 15
'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S933.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MADCAM1 MUTATED 1 0 1 0 0 1
MADCAM1 WILD-TYPE 8 17 6 12 6 4
'CTBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S934.  Gene #133: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CTBP2 MUTATED 1 2 0 0 0
CTBP2 WILD-TYPE 20 17 8 8 6
'MSH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 1

Table S935.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MSH3 MUTATED 1 0 0 3 0
MSH3 WILD-TYPE 20 19 8 5 6

Figure S69.  Get High-res Image Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MSH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S936.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MSH3 MUTATED 1 0 1 0 1
MSH3 WILD-TYPE 12 8 13 14 6
'MSH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S937.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MSH3 MUTATED 1 0 2 0
MSH3 WILD-TYPE 16 8 12 16
'MSH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S938.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MSH3 MUTATED 1 1 0 1
MSH3 WILD-TYPE 15 15 5 17
'MSH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S939.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MSH3 MUTATED 3 0 0
MSH3 WILD-TYPE 23 12 18
'MSH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S940.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MSH3 MUTATED 1 0 1 1 0
MSH3 WILD-TYPE 12 19 7 13 2
'MSH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S941.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MSH3 MUTATED 3 0 0
MSH3 WILD-TYPE 24 13 16
'MSH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S942.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MSH3 MUTATED 1 0 1 1 0 0
MSH3 WILD-TYPE 8 17 6 11 6 5
'ATN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S943.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ATN1 MUTATED 0 2 0 2 0
ATN1 WILD-TYPE 21 17 8 6 6
'ATN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S944.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ATN1 MUTATED 1 1 0 1 0
ATN1 WILD-TYPE 12 7 14 13 7
'ATN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S945.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ATN1 MUTATED 1 1 0 1
ATN1 WILD-TYPE 16 7 14 15
'ATN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S946.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ATN1 MUTATED 1 1 0 1
ATN1 WILD-TYPE 15 15 5 17
'ATN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S947.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ATN1 MUTATED 1 1 1
ATN1 WILD-TYPE 25 11 17
'ATN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S948.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ATN1 MUTATED 1 2 0 0 0
ATN1 WILD-TYPE 12 17 8 14 2
'ATN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S949.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ATN1 MUTATED 1 1 1
ATN1 WILD-TYPE 26 12 15
'ATN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S950.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ATN1 MUTATED 1 2 0 0 0 0
ATN1 WILD-TYPE 8 15 7 12 6 5
'FAM46A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S951.  Gene #136: 'FAM46A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FAM46A MUTATED 1 2 0 0 0
FAM46A WILD-TYPE 20 17 8 8 6
'UTS2R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S952.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
UTS2R MUTATED 0 1 0 1 1
UTS2R WILD-TYPE 21 18 8 7 5
'UTS2R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S953.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
UTS2R MUTATED 1 0 0 1 1
UTS2R WILD-TYPE 12 8 14 13 6
'UTS2R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S954.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
UTS2R MUTATED 1 0 0 2
UTS2R WILD-TYPE 16 8 14 14
'UTS2R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S955.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
UTS2R MUTATED 1 0 0 2
UTS2R WILD-TYPE 15 16 5 16
'UTS2R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S956.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
UTS2R MUTATED 1 0 2
UTS2R WILD-TYPE 25 12 16
'UTS2R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S957.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
UTS2R MUTATED 1 2 0 0 0
UTS2R WILD-TYPE 12 17 8 14 2
'UTS2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S958.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
UTS2R MUTATED 1 0 2
UTS2R WILD-TYPE 26 13 14
'UTS2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S959.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
UTS2R MUTATED 1 2 0 0 0 0
UTS2R WILD-TYPE 8 15 7 12 6 5
'SMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S960.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SMG1 MUTATED 0 1 1 0 1
SMG1 WILD-TYPE 21 18 7 8 5
'SMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S961.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SMG1 MUTATED 0 2 1 0 0
SMG1 WILD-TYPE 13 6 13 14 7
'SMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S962.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SMG1 MUTATED 0 1 2 0
SMG1 WILD-TYPE 17 7 12 16
'SMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 1

Table S963.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SMG1 MUTATED 0 3 0 0
SMG1 WILD-TYPE 16 13 5 18
'SMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S964.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SMG1 MUTATED 3 0 0
SMG1 WILD-TYPE 23 12 18
'SMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S965.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SMG1 MUTATED 1 0 1 0 1
SMG1 WILD-TYPE 12 19 7 14 1

Figure S70.  Get High-res Image Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S966.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SMG1 MUTATED 3 0 0
SMG1 WILD-TYPE 24 13 16
'SMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S967.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SMG1 MUTATED 1 0 1 0 1 0
SMG1 WILD-TYPE 8 17 6 12 5 5
'FUCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S968.  Gene #139: 'FUCA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FUCA1 MUTATED 1 0 1 1 0
FUCA1 WILD-TYPE 20 19 7 7 6
'FEZ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S969.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FEZ2 MUTATED 0 2 1 0 0
FEZ2 WILD-TYPE 21 17 7 8 6
'FEZ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S970.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
FEZ2 MUTATED 0 1 1 0 1
FEZ2 WILD-TYPE 13 7 13 14 6
'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S971.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
FEZ2 MUTATED 0 1 0 2
FEZ2 WILD-TYPE 17 7 14 14
'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S972.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
FEZ2 MUTATED 1 0 0 2
FEZ2 WILD-TYPE 15 16 5 16
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S973.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
FEZ2 MUTATED 0 1 2
FEZ2 WILD-TYPE 26 11 16
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S974.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
FEZ2 MUTATED 0 1 1 1 0
FEZ2 WILD-TYPE 13 18 7 13 2
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S975.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
FEZ2 MUTATED 0 1 2
FEZ2 WILD-TYPE 27 12 14
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S976.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
FEZ2 MUTATED 0 1 0 1 0 1
FEZ2 WILD-TYPE 9 16 7 11 6 4
'GLI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S977.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GLI3 MUTATED 3 1 0 1 0
GLI3 WILD-TYPE 18 18 8 7 6
'GLI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S978.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GLI3 MUTATED 2 0 0 1 1
GLI3 WILD-TYPE 11 8 14 13 6
'GLI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S979.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GLI3 MUTATED 2 0 1 1
GLI3 WILD-TYPE 15 8 13 15
'GLI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S980.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GLI3 MUTATED 2 1 0 1
GLI3 WILD-TYPE 14 15 5 17
'GLI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S981.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GLI3 MUTATED 4 0 0
GLI3 WILD-TYPE 22 12 18
'GLI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S982.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GLI3 MUTATED 1 0 1 2 0
GLI3 WILD-TYPE 12 19 7 12 2
'GLI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S983.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GLI3 MUTATED 4 0 0
GLI3 WILD-TYPE 23 13 16
'GLI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S984.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GLI3 MUTATED 0 0 2 2 0 0
GLI3 WILD-TYPE 9 17 5 10 6 5
'NOL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 1

Table S985.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NOL9 MUTATED 0 0 0 3 1
NOL9 WILD-TYPE 21 19 8 5 5

Figure S71.  Get High-res Image Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S986.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NOL9 MUTATED 1 0 1 1 0
NOL9 WILD-TYPE 12 8 13 13 7
'NOL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S987.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NOL9 MUTATED 1 0 1 1
NOL9 WILD-TYPE 16 8 13 15
'NOL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S988.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NOL9 MUTATED 1 1 0 1
NOL9 WILD-TYPE 15 15 5 17
'NOL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S989.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NOL9 MUTATED 1 1 1
NOL9 WILD-TYPE 25 11 17
'NOL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S990.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NOL9 MUTATED 0 1 0 2 0
NOL9 WILD-TYPE 13 18 8 12 2
'NOL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S991.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NOL9 MUTATED 1 1 1
NOL9 WILD-TYPE 26 12 15
'NOL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S992.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NOL9 MUTATED 0 1 0 2 0 0
NOL9 WILD-TYPE 9 16 7 10 6 5
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = ACC-TP.transferedmergedcluster.txt

  • Number of patients = 64

  • Number of significantly mutated genes = 142

  • Number of Molecular subtypes = 8

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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