[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oTACC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/10668128/ACC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/10686042/transformed.cor.cli.txt"

nPatients in clinical file=92, in cluster file=64, common to both=64
[1] "Reduce the number of clustering variables from 151 to 142."
[1] 142  64
[1] "ZFPM1 MUTATION ANALYSIS"
[1] 3
  ZFPM1 MUTATED ZFPM1 WILD-TYPE 
             26              38 
  ZFPM1 MUTATED ZFPM1 WILD-TYPE 
             26              38 
[1] "LACTB MUTATION ANALYSIS"
[1] 3
  LACTB MUTATED LACTB WILD-TYPE 
             20              44 
  LACTB MUTATED LACTB WILD-TYPE 
             20              44 
[1] "CCDC102A MUTATION ANALYSIS"
[1] 3
  CCDC102A MUTATED CCDC102A WILD-TYPE 
                17                 47 
  CCDC102A MUTATED CCDC102A WILD-TYPE 
                17                 47 
[1] "ZNF517 MUTATION ANALYSIS"
[1] 3
  ZNF517 MUTATED ZNF517 WILD-TYPE 
              13               51 
  ZNF517 MUTATED ZNF517 WILD-TYPE 
              13               51 
[1] "TOR3A MUTATION ANALYSIS"
[1] 3
  TOR3A MUTATED TOR3A WILD-TYPE 
             12              52 
  TOR3A MUTATED TOR3A WILD-TYPE 
             12              52 
[1] "USP42 MUTATION ANALYSIS"
[1] 3
  USP42 MUTATED USP42 WILD-TYPE 
             16              48 
  USP42 MUTATED USP42 WILD-TYPE 
             16              48 
[1] "CLDN23 MUTATION ANALYSIS"
[1] 3
  CLDN23 MUTATED CLDN23 WILD-TYPE 
              10               54 
  CLDN23 MUTATED CLDN23 WILD-TYPE 
              10               54 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            13             51 
  TP53 MUTATED TP53 WILD-TYPE 
            13             51 
[1] "KCNK17 MUTATION ANALYSIS"
[1] 3
  KCNK17 MUTATED KCNK17 WILD-TYPE 
               9               55 
  KCNK17 MUTATED KCNK17 WILD-TYPE 
               9               55 
[1] "LZTR1 MUTATION ANALYSIS"
[1] 3
  LZTR1 MUTATED LZTR1 WILD-TYPE 
              6              58 
  LZTR1 MUTATED LZTR1 WILD-TYPE 
              6              58 
[1] "APOE MUTATION ANALYSIS"
[1] 3
  APOE MUTATED APOE WILD-TYPE 
             7             57 
  APOE MUTATED APOE WILD-TYPE 
             7             57 
[1] "CCDC105 MUTATION ANALYSIS"
[1] 3
  CCDC105 MUTATED CCDC105 WILD-TYPE 
                7                57 
  CCDC105 MUTATED CCDC105 WILD-TYPE 
                7                57 
[1] "RINL MUTATION ANALYSIS"
[1] 3
  RINL MUTATED RINL WILD-TYPE 
             8             56 
  RINL MUTATED RINL WILD-TYPE 
             8             56 
[1] "MAL2 MUTATION ANALYSIS"
[1] 3
  MAL2 MUTATED MAL2 WILD-TYPE 
            12             52 
  MAL2 MUTATED MAL2 WILD-TYPE 
            12             52 
[1] "LRIG1 MUTATION ANALYSIS"
[1] 3
  LRIG1 MUTATED LRIG1 WILD-TYPE 
             17              47 
  LRIG1 MUTATED LRIG1 WILD-TYPE 
             17              47 
[1] "C19ORF10 MUTATION ANALYSIS"
[1] 3
  C19ORF10 MUTATED C19ORF10 WILD-TYPE 
                 8                 56 
  C19ORF10 MUTATED C19ORF10 WILD-TYPE 
                 8                 56 
[1] "C10ORF95 MUTATION ANALYSIS"
[1] 3
  C10ORF95 MUTATED C10ORF95 WILD-TYPE 
                 7                 57 
  C10ORF95 MUTATED C10ORF95 WILD-TYPE 
                 7                 57 
[1] "SYT8 MUTATION ANALYSIS"
[1] 3
  SYT8 MUTATED SYT8 WILD-TYPE 
             9             55 
  SYT8 MUTATED SYT8 WILD-TYPE 
             9             55 
[1] "IDUA MUTATION ANALYSIS"
[1] 3
  IDUA MUTATED IDUA WILD-TYPE 
             9             55 
  IDUA MUTATED IDUA WILD-TYPE 
             9             55 
[1] "HHIPL1 MUTATION ANALYSIS"
[1] 3
  HHIPL1 MUTATED HHIPL1 WILD-TYPE 
               8               56 
  HHIPL1 MUTATED HHIPL1 WILD-TYPE 
               8               56 
[1] "ASPDH MUTATION ANALYSIS"
[1] 3
  ASPDH MUTATED ASPDH WILD-TYPE 
              8              56 
  ASPDH MUTATED ASPDH WILD-TYPE 
              8              56 
[1] "C1ORF106 MUTATION ANALYSIS"
[1] 3
  C1ORF106 MUTATED C1ORF106 WILD-TYPE 
                 9                 55 
  C1ORF106 MUTATED C1ORF106 WILD-TYPE 
                 9                 55 
[1] "THEM4 MUTATION ANALYSIS"
[1] 3
  THEM4 MUTATED THEM4 WILD-TYPE 
              6              58 
  THEM4 MUTATED THEM4 WILD-TYPE 
              6              58 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               7               57 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               7               57 
[1] "GDF1 MUTATION ANALYSIS"
[1] 3
  GDF1 MUTATED GDF1 WILD-TYPE 
             5             59 
  GDF1 MUTATED GDF1 WILD-TYPE 
             5             59 
[1] "TSC22D2 MUTATION ANALYSIS"
[1] 3
  TSC22D2 MUTATED TSC22D2 WILD-TYPE 
                8                56 
  TSC22D2 MUTATED TSC22D2 WILD-TYPE 
                8                56 
[1] "ZAR1 MUTATION ANALYSIS"
[1] 3
  ZAR1 MUTATED ZAR1 WILD-TYPE 
            11             53 
  ZAR1 MUTATED ZAR1 WILD-TYPE 
            11             53 
[1] "RGS9BP MUTATION ANALYSIS"
[1] 3
  RGS9BP MUTATED RGS9BP WILD-TYPE 
               8               56 
  RGS9BP MUTATED RGS9BP WILD-TYPE 
               8               56 
[1] "OPRD1 MUTATION ANALYSIS"
[1] 3
  OPRD1 MUTATED OPRD1 WILD-TYPE 
             12              52 
  OPRD1 MUTATED OPRD1 WILD-TYPE 
             12              52 
[1] "C16ORF3 MUTATION ANALYSIS"
[1] 3
  C16ORF3 MUTATED C16ORF3 WILD-TYPE 
                6                58 
  C16ORF3 MUTATED C16ORF3 WILD-TYPE 
                6                58 
[1] "FPGS MUTATION ANALYSIS"
[1] 3
  FPGS MUTATED FPGS WILD-TYPE 
             6             58 
  FPGS MUTATED FPGS WILD-TYPE 
             6             58 
[1] "PLIN5 MUTATION ANALYSIS"
[1] 3
  PLIN5 MUTATED PLIN5 WILD-TYPE 
              5              59 
  PLIN5 MUTATED PLIN5 WILD-TYPE 
              5              59 
[1] "IRX3 MUTATION ANALYSIS"
[1] 3
  IRX3 MUTATED IRX3 WILD-TYPE 
             5             59 
  IRX3 MUTATED IRX3 WILD-TYPE 
             5             59 
[1] "TRIOBP MUTATION ANALYSIS"
[1] 3
  TRIOBP MUTATED TRIOBP WILD-TYPE 
              12               52 
  TRIOBP MUTATED TRIOBP WILD-TYPE 
              12               52 
[1] "KRTAP4-5 MUTATION ANALYSIS"
[1] 3
  KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE 
                 5                 59 
  KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE 
                 5                 59 
[1] "ATXN1 MUTATION ANALYSIS"
[1] 3
  ATXN1 MUTATED ATXN1 WILD-TYPE 
             10              54 
  ATXN1 MUTATED ATXN1 WILD-TYPE 
             10              54 
[1] "ZNF628 MUTATION ANALYSIS"
[1] 3
  ZNF628 MUTATED ZNF628 WILD-TYPE 
               7               57 
  ZNF628 MUTATED ZNF628 WILD-TYPE 
               7               57 
[1] "WDR34 MUTATION ANALYSIS"
[1] 3
  WDR34 MUTATED WDR34 WILD-TYPE 
              5              59 
  WDR34 MUTATED WDR34 WILD-TYPE 
              5              59 
[1] "BTBD11 MUTATION ANALYSIS"
[1] 3
  BTBD11 MUTATED BTBD11 WILD-TYPE 
               6               58 
  BTBD11 MUTATED BTBD11 WILD-TYPE 
               6               58 
[1] "GARS MUTATION ANALYSIS"
[1] 3
  GARS MUTATED GARS WILD-TYPE 
            21             43 
  GARS MUTATED GARS WILD-TYPE 
            21             43 
[1] "ZNF598 MUTATION ANALYSIS"
[1] 3
  ZNF598 MUTATED ZNF598 WILD-TYPE 
              13               51 
  ZNF598 MUTATED ZNF598 WILD-TYPE 
              13               51 
[1] "BHLHE22 MUTATION ANALYSIS"
[1] 3
  BHLHE22 MUTATED BHLHE22 WILD-TYPE 
                5                59 
  BHLHE22 MUTATED BHLHE22 WILD-TYPE 
                5                59 
[1] "PTPLA MUTATION ANALYSIS"
[1] 3
  PTPLA MUTATED PTPLA WILD-TYPE 
              4              60 
  PTPLA MUTATED PTPLA WILD-TYPE 
              4              60 
[1] "CD320 MUTATION ANALYSIS"
[1] 3
  CD320 MUTATED CD320 WILD-TYPE 
              4              60 
  CD320 MUTATED CD320 WILD-TYPE 
              4              60 
[1] "KIAA1984 MUTATION ANALYSIS"
[1] 3
  KIAA1984 MUTATED KIAA1984 WILD-TYPE 
                 4                 60 
  KIAA1984 MUTATED KIAA1984 WILD-TYPE 
                 4                 60 
[1] "TPO MUTATION ANALYSIS"
[1] 3
  TPO MUTATED TPO WILD-TYPE 
           12            52 
  TPO MUTATED TPO WILD-TYPE 
           12            52 
[1] "AATK MUTATION ANALYSIS"
[1] 3
  AATK MUTATED AATK WILD-TYPE 
             6             58 
  AATK MUTATED AATK WILD-TYPE 
             6             58 
[1] "PANK2 MUTATION ANALYSIS"
[1] 3
  PANK2 MUTATED PANK2 WILD-TYPE 
              5              59 
  PANK2 MUTATED PANK2 WILD-TYPE 
              5              59 
[1] "SNED1 MUTATION ANALYSIS"
[1] 3
  SNED1 MUTATED SNED1 WILD-TYPE 
              6              58 
  SNED1 MUTATED SNED1 WILD-TYPE 
              6              58 
[1] "CCDC150 MUTATION ANALYSIS"
[1] 3
  CCDC150 MUTATED CCDC150 WILD-TYPE 
                4                60 
  CCDC150 MUTATED CCDC150 WILD-TYPE 
                4                60 
[1] "ERCC2 MUTATION ANALYSIS"
[1] 3
  ERCC2 MUTATED ERCC2 WILD-TYPE 
             10              54 
  ERCC2 MUTATED ERCC2 WILD-TYPE 
             10              54 
[1] "RREB1 MUTATION ANALYSIS"
[1] 3
  RREB1 MUTATED RREB1 WILD-TYPE 
              5              59 
  RREB1 MUTATED RREB1 WILD-TYPE 
              5              59 
[1] "RNF39 MUTATION ANALYSIS"
[1] 3
  RNF39 MUTATED RNF39 WILD-TYPE 
              5              59 
  RNF39 MUTATED RNF39 WILD-TYPE 
              5              59 
[1] "SEMA5B MUTATION ANALYSIS"
[1] 3
  SEMA5B MUTATED SEMA5B WILD-TYPE 
               8               56 
  SEMA5B MUTATED SEMA5B WILD-TYPE 
               8               56 
[1] "TAF5 MUTATION ANALYSIS"
[1] 3
  TAF5 MUTATED TAF5 WILD-TYPE 
             4             60 
  TAF5 MUTATED TAF5 WILD-TYPE 
             4             60 
[1] "SARM1 MUTATION ANALYSIS"
[1] 3
  SARM1 MUTATED SARM1 WILD-TYPE 
              7              57 
  SARM1 MUTATED SARM1 WILD-TYPE 
              7              57 
[1] "PRSS27 MUTATION ANALYSIS"
[1] 3
  PRSS27 MUTATED PRSS27 WILD-TYPE 
               3               61 
  PRSS27 MUTATED PRSS27 WILD-TYPE 
               3               61 
[1] "TMEM189 MUTATION ANALYSIS"
[1] 3
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                4                60 
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                4                60 
[1] "NOXA1 MUTATION ANALYSIS"
[1] 3
  NOXA1 MUTATED NOXA1 WILD-TYPE 
              5              59 
  NOXA1 MUTATED NOXA1 WILD-TYPE 
              5              59 
[1] "LRP11 MUTATION ANALYSIS"
[1] 3
  LRP11 MUTATED LRP11 WILD-TYPE 
              7              57 
  LRP11 MUTATED LRP11 WILD-TYPE 
              7              57 
[1] "RNF149 MUTATION ANALYSIS"
[1] 3
  RNF149 MUTATED RNF149 WILD-TYPE 
               4               60 
  RNF149 MUTATED RNF149 WILD-TYPE 
               4               60 
[1] "DMKN MUTATION ANALYSIS"
[1] 3
  DMKN MUTATED DMKN WILD-TYPE 
             3             61 
  DMKN MUTATED DMKN WILD-TYPE 
             3             61 
[1] "FANK1 MUTATION ANALYSIS"
[1] 3
  FANK1 MUTATED FANK1 WILD-TYPE 
              4              60 
  FANK1 MUTATED FANK1 WILD-TYPE 
              4              60 
[1] "MUC5B MUTATION ANALYSIS"
[1] 3
  MUC5B MUTATED MUC5B WILD-TYPE 
             22              42 
  MUC5B MUTATED MUC5B WILD-TYPE 
             22              42 
[1] "PABPC1 MUTATION ANALYSIS"
[1] 3
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               4               60 
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               4               60 
[1] "GLTPD2 MUTATION ANALYSIS"
[1] 3
  GLTPD2 MUTATED GLTPD2 WILD-TYPE 
               6               58 
  GLTPD2 MUTATED GLTPD2 WILD-TYPE 
               6               58 
[1] "MEN1 MUTATION ANALYSIS"
[1] 3
  MEN1 MUTATED MEN1 WILD-TYPE 
             5             59 
  MEN1 MUTATED MEN1 WILD-TYPE 
             5             59 
[1] "SRPX MUTATION ANALYSIS"
[1] 3
  SRPX MUTATED SRPX WILD-TYPE 
             3             61 
  SRPX MUTATED SRPX WILD-TYPE 
             3             61 
[1] "MAP1S MUTATION ANALYSIS"
[1] 3
  MAP1S MUTATED MAP1S WILD-TYPE 
              5              59 
  MAP1S MUTATED MAP1S WILD-TYPE 
              5              59 
[1] "SCRT1 MUTATION ANALYSIS"
[1] 3
  SCRT1 MUTATED SCRT1 WILD-TYPE 
              3              61 
  SCRT1 MUTATED SCRT1 WILD-TYPE 
              3              61 
[1] "OBSCN MUTATION ANALYSIS"
[1] 3
  OBSCN MUTATED OBSCN WILD-TYPE 
             20              44 
  OBSCN MUTATED OBSCN WILD-TYPE 
             20              44 
[1] "IER5 MUTATION ANALYSIS"
[1] 3
  IER5 MUTATED IER5 WILD-TYPE 
             3             61 
  IER5 MUTATED IER5 WILD-TYPE 
             3             61 
[1] "TNIP2 MUTATION ANALYSIS"
[1] 3
  TNIP2 MUTATED TNIP2 WILD-TYPE 
              5              59 
  TNIP2 MUTATED TNIP2 WILD-TYPE 
              5              59 
[1] "NOTCH2 MUTATION ANALYSIS"
[1] 3
  NOTCH2 MUTATED NOTCH2 WILD-TYPE 
               7               57 
  NOTCH2 MUTATED NOTCH2 WILD-TYPE 
               7               57 
[1] "RASIP1 MUTATION ANALYSIS"
[1] 3
  RASIP1 MUTATED RASIP1 WILD-TYPE 
               7               57 
  RASIP1 MUTATED RASIP1 WILD-TYPE 
               7               57 
[1] "NMU MUTATION ANALYSIS"
[1] 3
  NMU MUTATED NMU WILD-TYPE 
            5            59 
  NMU MUTATED NMU WILD-TYPE 
            5            59 
[1] "VARS MUTATION ANALYSIS"
[1] 3
  VARS MUTATED VARS WILD-TYPE 
             6             58 
  VARS MUTATED VARS WILD-TYPE 
             6             58 
[1] "SHOX2 MUTATION ANALYSIS"
[1] 3
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              3              61 
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              3              61 
[1] "HSD17B1 MUTATION ANALYSIS"
[1] 3
  HSD17B1 MUTATED HSD17B1 WILD-TYPE 
                4                60 
  HSD17B1 MUTATED HSD17B1 WILD-TYPE 
                4                60 
[1] "COQ2 MUTATION ANALYSIS"
[1] 3
  COQ2 MUTATED COQ2 WILD-TYPE 
             5             59 
  COQ2 MUTATED COQ2 WILD-TYPE 
             5             59 
[1] "KNDC1 MUTATION ANALYSIS"
[1] 3
  KNDC1 MUTATED KNDC1 WILD-TYPE 
             10              54 
  KNDC1 MUTATED KNDC1 WILD-TYPE 
             10              54 
[1] "AR MUTATION ANALYSIS"
[1] 3
  AR MUTATED AR WILD-TYPE 
           4           60 
  AR MUTATED AR WILD-TYPE 
           4           60 
[1] "KCTD3 MUTATION ANALYSIS"
[1] 3
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              4              60 
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              4              60 
[1] "FZD1 MUTATION ANALYSIS"
[1] 3
  FZD1 MUTATED FZD1 WILD-TYPE 
             3             61 
  FZD1 MUTATED FZD1 WILD-TYPE 
             3             61 
[1] "ZC3H12D MUTATION ANALYSIS"
[1] 3
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                3                61 
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                3                61 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 5                 59 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 5                 59 
[1] "AKAP2 MUTATION ANALYSIS"
[1] 3
  AKAP2 MUTATED AKAP2 WILD-TYPE 
              4              60 
  AKAP2 MUTATED AKAP2 WILD-TYPE 
              4              60 
[1] "KBTBD13 MUTATION ANALYSIS"
[1] 3
  KBTBD13 MUTATED KBTBD13 WILD-TYPE 
                9                55 
  KBTBD13 MUTATED KBTBD13 WILD-TYPE 
                9                55 
[1] "SPIRE2 MUTATION ANALYSIS"
[1] 3
  SPIRE2 MUTATED SPIRE2 WILD-TYPE 
               3               61 
  SPIRE2 MUTATED SPIRE2 WILD-TYPE 
               3               61 
[1] "NPTX1 MUTATION ANALYSIS"
[1] 3
  NPTX1 MUTATED NPTX1 WILD-TYPE 
              3              61 
  NPTX1 MUTATED NPTX1 WILD-TYPE 
              3              61 
[1] "ADAD2 MUTATION ANALYSIS"
[1] 3
  ADAD2 MUTATED ADAD2 WILD-TYPE 
              4              60 
  ADAD2 MUTATED ADAD2 WILD-TYPE 
              4              60 
[1] "SEZ6L2 MUTATION ANALYSIS"
[1] 3
  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
               8               56 
  SEZ6L2 MUTATED SEZ6L2 WILD-TYPE 
               8               56 
[1] "NEFH MUTATION ANALYSIS"
[1] 3
  NEFH MUTATED NEFH WILD-TYPE 
             7             57 
  NEFH MUTATED NEFH WILD-TYPE 
             7             57 
[1] "DLEU7 MUTATION ANALYSIS"
[1] 3
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              3              61 
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              3              61 
[1] "AMDHD1 MUTATION ANALYSIS"
[1] 3
  AMDHD1 MUTATED AMDHD1 WILD-TYPE 
              11               53 
  AMDHD1 MUTATED AMDHD1 WILD-TYPE 
              11               53 
[1] "GLTSCR2 MUTATION ANALYSIS"
[1] 3
  GLTSCR2 MUTATED GLTSCR2 WILD-TYPE 
                5                59 
  GLTSCR2 MUTATED GLTSCR2 WILD-TYPE 
                5                59 
[1] "PLEC MUTATION ANALYSIS"
[1] 3
  PLEC MUTATED PLEC WILD-TYPE 
            13             51 
  PLEC MUTATED PLEC WILD-TYPE 
            13             51 
[1] "MAP7 MUTATION ANALYSIS"
[1] 3
  MAP7 MUTATED MAP7 WILD-TYPE 
             3             61 
  MAP7 MUTATED MAP7 WILD-TYPE 
             3             61 
[1] "DSPP MUTATION ANALYSIS"
[1] 3
  DSPP MUTATED DSPP WILD-TYPE 
            10             54 
  DSPP MUTATED DSPP WILD-TYPE 
            10             54 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              10               54 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              10               54 
[1] "PRKAR1A MUTATION ANALYSIS"
[1] 3
  PRKAR1A MUTATED PRKAR1A WILD-TYPE 
                6                58 
  PRKAR1A MUTATED PRKAR1A WILD-TYPE 
                6                58 
[1] "CYP4A22 MUTATION ANALYSIS"
[1] 3
  CYP4A22 MUTATED CYP4A22 WILD-TYPE 
                4                60 
  CYP4A22 MUTATED CYP4A22 WILD-TYPE 
                4                60 
[1] "NOM1 MUTATION ANALYSIS"
[1] 3
  NOM1 MUTATED NOM1 WILD-TYPE 
             6             58 
  NOM1 MUTATED NOM1 WILD-TYPE 
             6             58 
[1] "RNF135 MUTATION ANALYSIS"
[1] 3
  RNF135 MUTATED RNF135 WILD-TYPE 
               3               61 
  RNF135 MUTATED RNF135 WILD-TYPE 
               3               61 
[1] "C12ORF65 MUTATION ANALYSIS"
[1] 3
  C12ORF65 MUTATED C12ORF65 WILD-TYPE 
                 3                 61 
  C12ORF65 MUTATED C12ORF65 WILD-TYPE 
                 3                 61 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
              6              58 
  HLA-B MUTATED HLA-B WILD-TYPE 
              6              58 
[1] "CSGALNACT2 MUTATION ANALYSIS"
[1] 3
  CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE 
                   3                   61 
  CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE 
                   3                   61 
[1] "UQCRFS1 MUTATION ANALYSIS"
[1] 3
  UQCRFS1 MUTATED UQCRFS1 WILD-TYPE 
                5                59 
  UQCRFS1 MUTATED UQCRFS1 WILD-TYPE 
                5                59 
[1] "PDCD6 MUTATION ANALYSIS"
[1] 3
  PDCD6 MUTATED PDCD6 WILD-TYPE 
              3              61 
  PDCD6 MUTATED PDCD6 WILD-TYPE 
              3              61 
[1] "PTX4 MUTATION ANALYSIS"
[1] 3
  PTX4 MUTATED PTX4 WILD-TYPE 
             3             61 
  PTX4 MUTATED PTX4 WILD-TYPE 
             3             61 
[1] "SGK223 MUTATION ANALYSIS"
[1] 3
  SGK223 MUTATED SGK223 WILD-TYPE 
               3               61 
  SGK223 MUTATED SGK223 WILD-TYPE 
               3               61 
[1] "POLRMT MUTATION ANALYSIS"
[1] 3
  POLRMT MUTATED POLRMT WILD-TYPE 
               4               60 
  POLRMT MUTATED POLRMT WILD-TYPE 
               4               60 
[1] "CACNA1D MUTATION ANALYSIS"
[1] 3
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                3                61 
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                3                61 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
            7            57 
  NF1 MUTATED NF1 WILD-TYPE 
            7            57 
[1] "RGMB MUTATION ANALYSIS"
[1] 3
  RGMB MUTATED RGMB WILD-TYPE 
             6             58 
  RGMB MUTATED RGMB WILD-TYPE 
             6             58 
[1] "ADAMTS7 MUTATION ANALYSIS"
[1] 3
  ADAMTS7 MUTATED ADAMTS7 WILD-TYPE 
                4                60 
  ADAMTS7 MUTATED ADAMTS7 WILD-TYPE 
                4                60 
[1] "CLIC6 MUTATION ANALYSIS"
[1] 3
  CLIC6 MUTATED CLIC6 WILD-TYPE 
              6              58 
  CLIC6 MUTATED CLIC6 WILD-TYPE 
              6              58 
[1] "EMR2 MUTATION ANALYSIS"
[1] 3
  EMR2 MUTATED EMR2 WILD-TYPE 
             4             60 
  EMR2 MUTATED EMR2 WILD-TYPE 
             4             60 
[1] "PCDHB13 MUTATION ANALYSIS"
[1] 3
  PCDHB13 MUTATED PCDHB13 WILD-TYPE 
                5                59 
  PCDHB13 MUTATED PCDHB13 WILD-TYPE 
                5                59 
[1] "MTFMT MUTATION ANALYSIS"
[1] 3
  MTFMT MUTATED MTFMT WILD-TYPE 
              3              61 
  MTFMT MUTATED MTFMT WILD-TYPE 
              3              61 
[1] "SPTAN1 MUTATION ANALYSIS"
[1] 3
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               3               61 
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               3               61 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              3              61 
  HLA-A MUTATED HLA-A WILD-TYPE 
              3              61 
[1] "ASB16 MUTATION ANALYSIS"
[1] 3
  ASB16 MUTATED ASB16 WILD-TYPE 
              6              58 
  ASB16 MUTATED ASB16 WILD-TYPE 
              6              58 
[1] "GPRIN2 MUTATION ANALYSIS"
[1] 3
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
               9               55 
  GPRIN2 MUTATED GPRIN2 WILD-TYPE 
               9               55 
[1] "HNRNPCL1 MUTATION ANALYSIS"
[1] 3
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 3                 61 
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 3                 61 
[1] "BTNL9 MUTATION ANALYSIS"
[1] 3
  BTNL9 MUTATED BTNL9 WILD-TYPE 
              4              60 
  BTNL9 MUTATED BTNL9 WILD-TYPE 
              4              60 
[1] "KCNJ11 MUTATION ANALYSIS"
[1] 3
  KCNJ11 MUTATED KCNJ11 WILD-TYPE 
               4               60 
  KCNJ11 MUTATED KCNJ11 WILD-TYPE 
               4               60 
[1] "JMJD4 MUTATION ANALYSIS"
[1] 3
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              3              61 
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              3              61 
[1] "LRRC4B MUTATION ANALYSIS"
[1] 3
  LRRC4B MUTATED LRRC4B WILD-TYPE 
               6               58 
  LRRC4B MUTATED LRRC4B WILD-TYPE 
               6               58 
[1] "OPLAH MUTATION ANALYSIS"
[1] 3
  OPLAH MUTATED OPLAH WILD-TYPE 
              3              61 
  OPLAH MUTATED OPLAH WILD-TYPE 
              3              61 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3              61 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3              61 
[1] "MADCAM1 MUTATION ANALYSIS"
[1] 3
  MADCAM1 MUTATED MADCAM1 WILD-TYPE 
                3                61 
  MADCAM1 MUTATED MADCAM1 WILD-TYPE 
                3                61 
[1] "CTBP2 MUTATION ANALYSIS"
[1] 3
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              3              61 
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              3              61 
[1] "MSH3 MUTATION ANALYSIS"
[1] 3
  MSH3 MUTATED MSH3 WILD-TYPE 
             4             60 
  MSH3 MUTATED MSH3 WILD-TYPE 
             4             60 
[1] "ATN1 MUTATION ANALYSIS"
[1] 3
  ATN1 MUTATED ATN1 WILD-TYPE 
             4             60 
  ATN1 MUTATED ATN1 WILD-TYPE 
             4             60 
[1] "FAM46A MUTATION ANALYSIS"
[1] 3
  FAM46A MUTATED FAM46A WILD-TYPE 
               3               61 
  FAM46A MUTATED FAM46A WILD-TYPE 
               3               61 
[1] "UTS2R MUTATION ANALYSIS"
[1] 3
  UTS2R MUTATED UTS2R WILD-TYPE 
              3              61 
  UTS2R MUTATED UTS2R WILD-TYPE 
              3              61 
[1] "SMG1 MUTATION ANALYSIS"
[1] 3
  SMG1 MUTATED SMG1 WILD-TYPE 
             3             61 
  SMG1 MUTATED SMG1 WILD-TYPE 
             3             61 
[1] "FUCA1 MUTATION ANALYSIS"
[1] 3
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              3              61 
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              3              61 
[1] "FEZ2 MUTATION ANALYSIS"
[1] 3
  FEZ2 MUTATED FEZ2 WILD-TYPE 
             3             61 
  FEZ2 MUTATED FEZ2 WILD-TYPE 
             3             61 
[1] "GLI3 MUTATION ANALYSIS"
[1] 3
  GLI3 MUTATED GLI3 WILD-TYPE 
             5             59 
  GLI3 MUTATED GLI3 WILD-TYPE 
             5             59 
[1] "NOL9 MUTATION ANALYSIS"
[1] 3
  NOL9 MUTATED NOL9 WILD-TYPE 
             4             60 
  NOL9 MUTATED NOL9 WILD-TYPE 
             4             60 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 64 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 64 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = ZFPM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFPM1 MUTATED       10      7      2      6      1
  ZFPM1 WILD-TYPE     11     12      6      2      5
D1V1, multiclass
        clus
vv       ZFPM1 MUTATED ZFPM1 WILD-TYPE
  CLUS_1            10              11
  CLUS_2             7              12
  CLUS_3             2               6
  CLUS_4             6               2
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFPM1 MUTATED        6      4      4      6      2
  ZFPM1 WILD-TYPE      7      4     10      8      5
D1V2, multiclass
        clus
vv       ZFPM1 MUTATED ZFPM1 WILD-TYPE
  CLUS_1             6               7
  CLUS_2             4               4
  CLUS_3             4              10
  CLUS_4             6               8
  CLUS_5             2               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFPM1 MUTATED        8      1      7      6
  ZFPM1 WILD-TYPE      9      7      7     10
D1V3, multiclass
        clus
vv       ZFPM1 MUTATED ZFPM1 WILD-TYPE
  CLUS_1             8               9
  CLUS_2             1               7
  CLUS_3             7               7
  CLUS_4             6              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFPM1 MUTATED        8      6      2      6
  ZFPM1 WILD-TYPE      8     10      3     12
D1V4, multiclass
        clus
vv       ZFPM1 MUTATED ZFPM1 WILD-TYPE
  CLUS_1             8               8
  CLUS_2             6              10
  CLUS_3             2               3
  CLUS_4             6              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFPM1 MUTATED       10      6      6
  ZFPM1 WILD-TYPE     16      6     12
D1V5, multiclass
        clus
vv       ZFPM1 MUTATED ZFPM1 WILD-TYPE
  CLUS_1            10              16
  CLUS_2             6               6
  CLUS_3             6              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFPM1 MUTATED        5      9      2      5      1
  ZFPM1 WILD-TYPE      8     10      6      9      1
D1V6, multiclass
        clus
vv       ZFPM1 MUTATED ZFPM1 WILD-TYPE
  CLUS_1             5               8
  CLUS_2             9              10
  CLUS_3             2               6
  CLUS_4             5               9
  CLUS_5             1               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFPM1 MUTATED       10      7      5
  ZFPM1 WILD-TYPE     17      6     11
D1V7, multiclass
        clus
vv       ZFPM1 MUTATED ZFPM1 WILD-TYPE
  CLUS_1            10              17
  CLUS_2             7               6
  CLUS_3             5              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFPM1 MUTATED        4      7      2      5      3      1
  ZFPM1 WILD-TYPE      5     10      5      7      3      4
D1V8, multiclass
        clus
vv       ZFPM1 MUTATED ZFPM1 WILD-TYPE
  CLUS_1             4               5
  CLUS_2             7              10
  CLUS_3             2               5
  CLUS_4             5               7
  CLUS_5             3               3
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = LACTB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LACTB MUTATED        5      5      2      6      2
  LACTB WILD-TYPE     16     14      6      2      4
D2V1, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             5              16
  CLUS_2             5              14
  CLUS_3             2               6
  CLUS_4             6               2
  CLUS_5             2               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LACTB MUTATED        2      3      5      4      3
  LACTB WILD-TYPE     11      5      9     10      4
D2V2, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             2              11
  CLUS_2             3               5
  CLUS_3             5               9
  CLUS_4             4              10
  CLUS_5             3               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LACTB MUTATED        5      2      5      5
  LACTB WILD-TYPE     12      6      9     11
D2V3, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             5              12
  CLUS_2             2               6
  CLUS_3             5               9
  CLUS_4             5              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LACTB MUTATED        4      5      3      5
  LACTB WILD-TYPE     12     11      2     13
D2V4, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             4              12
  CLUS_2             5              11
  CLUS_3             3               2
  CLUS_4             5              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LACTB MUTATED        6      5      6
  LACTB WILD-TYPE     20      7     12
D2V5, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             6              20
  CLUS_2             5               7
  CLUS_3             6              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LACTB MUTATED        4      5      4      4      0
  LACTB WILD-TYPE      9     14      4     10      2
D2V6, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             4               9
  CLUS_2             5              14
  CLUS_3             4               4
  CLUS_4             4              10
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LACTB MUTATED        6      6      5
  LACTB WILD-TYPE     21      7     11
D2V7, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             6              21
  CLUS_2             6               7
  CLUS_3             5              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LACTB MUTATED        3      4      2      3      2      3
  LACTB WILD-TYPE      6     13      5      9      4      2
D2V8, multiclass
        clus
vv       LACTB MUTATED LACTB WILD-TYPE
  CLUS_1             3               6
  CLUS_2             4              13
  CLUS_3             2               5
  CLUS_4             3               9
  CLUS_5             2               4
  CLUS_6             3               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = CCDC102A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC102A MUTATED        4      7      0      3      3
  CCDC102A WILD-TYPE     17     12      8      5      3
D3V1, multiclass
        clus
vv       CCDC102A MUTATED CCDC102A WILD-TYPE
  CLUS_1                4                 17
  CLUS_2                7                 12
  CLUS_3                0                  8
  CLUS_4                3                  5
  CLUS_5                3                  3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC102A MUTATED        3      2      4      4      3
  CCDC102A WILD-TYPE     10      6     10     10      4
D3V2, multiclass
        clus
vv       CCDC102A MUTATED CCDC102A WILD-TYPE
  CLUS_1                3                 10
  CLUS_2                2                  6
  CLUS_3                4                 10
  CLUS_4                4                 10
  CLUS_5                3                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC102A MUTATED        4      3      4      5
  CCDC102A WILD-TYPE     13      5     10     11
D3V3, multiclass
        clus
vv       CCDC102A MUTATED CCDC102A WILD-TYPE
  CLUS_1                4                 13
  CLUS_2                3                  5
  CLUS_3                4                 10
  CLUS_4                5                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC102A MUTATED        4      4      1      7
  CCDC102A WILD-TYPE     12     12      4     11
D3V4, multiclass
        clus
vv       CCDC102A MUTATED CCDC102A WILD-TYPE
  CLUS_1                4                 12
  CLUS_2                4                 12
  CLUS_3                1                  4
  CLUS_4                7                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CCDC102A MUTATED        7      2      7
  CCDC102A WILD-TYPE     19     10     11
D3V5, multiclass
        clus
vv       CCDC102A MUTATED CCDC102A WILD-TYPE
  CLUS_1                7                 19
  CLUS_2                2                 10
  CLUS_3                7                 11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC102A MUTATED        2      6      4      4      0
  CCDC102A WILD-TYPE     11     13      4     10      2
D3V6, multiclass
        clus
vv       CCDC102A MUTATED CCDC102A WILD-TYPE
  CLUS_1                2                 11
  CLUS_2                6                 13
  CLUS_3                4                  4
  CLUS_4                4                 10
  CLUS_5                0                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CCDC102A MUTATED        7      3      6
  CCDC102A WILD-TYPE     20     10     10
D3V7, multiclass
        clus
vv       CCDC102A MUTATED CCDC102A WILD-TYPE
  CLUS_1                7                 20
  CLUS_2                3                 10
  CLUS_3                6                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC102A MUTATED        0      6      3      3      1      3
  CCDC102A WILD-TYPE      9     11      4      9      5      2
D3V8, multiclass
        clus
vv       CCDC102A MUTATED CCDC102A WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                6                 11
  CLUS_3                3                  4
  CLUS_4                3                  9
  CLUS_5                1                  5
  CLUS_6                3                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = ZNF517 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF517 MUTATED        5      5      0      2      1
  ZNF517 WILD-TYPE     16     14      8      6      5
D4V1, multiclass
        clus
vv       ZNF517 MUTATED ZNF517 WILD-TYPE
  CLUS_1              5               16
  CLUS_2              5               14
  CLUS_3              0                8
  CLUS_4              2                6
  CLUS_5              1                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF517 MUTATED        3      1      2      2      1
  ZNF517 WILD-TYPE     10      7     12     12      6
D4V2, multiclass
        clus
vv       ZNF517 MUTATED ZNF517 WILD-TYPE
  CLUS_1              3               10
  CLUS_2              1                7
  CLUS_3              2               12
  CLUS_4              2               12
  CLUS_5              1                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF517 MUTATED        4      1      2      2
  ZNF517 WILD-TYPE     13      7     12     14
D4V3, multiclass
        clus
vv       ZNF517 MUTATED ZNF517 WILD-TYPE
  CLUS_1              4               13
  CLUS_2              1                7
  CLUS_3              2               12
  CLUS_4              2               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF517 MUTATED        3      2      1      3
  ZNF517 WILD-TYPE     13     14      4     15
D4V4, multiclass
        clus
vv       ZNF517 MUTATED ZNF517 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              2               14
  CLUS_3              1                4
  CLUS_4              3               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF517 MUTATED        3      4      2
  ZNF517 WILD-TYPE     23      8     16
D4V5, multiclass
        clus
vv       ZNF517 MUTATED ZNF517 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              4                8
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF517 MUTATED        1      3      1      4      0
  ZNF517 WILD-TYPE     12     16      7     10      2
D4V6, multiclass
        clus
vv       ZNF517 MUTATED ZNF517 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              3               16
  CLUS_3              1                7
  CLUS_4              4               10
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF517 MUTATED        4      3      2
  ZNF517 WILD-TYPE     23     10     14
D4V7, multiclass
        clus
vv       ZNF517 MUTATED ZNF517 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              3               10
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF517 MUTATED        0      2      1      4      1      1
  ZNF517 WILD-TYPE      9     15      6      8      5      4
D4V8, multiclass
        clus
vv       ZNF517 MUTATED ZNF517 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2               15
  CLUS_3              1                6
  CLUS_4              4                8
  CLUS_5              1                5
  CLUS_6              1                4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = TOR3A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOR3A MUTATED        5      3      0      3      0
  TOR3A WILD-TYPE     16     16      8      5      6
D5V1, multiclass
        clus
vv       TOR3A MUTATED TOR3A WILD-TYPE
  CLUS_1             5              16
  CLUS_2             3              16
  CLUS_3             0               8
  CLUS_4             3               5
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOR3A MUTATED        0      0      4      6      1
  TOR3A WILD-TYPE     13      8     10      8      6
D5V2, multiclass
        clus
vv       TOR3A MUTATED TOR3A WILD-TYPE
  CLUS_1             0              13
  CLUS_2             0               8
  CLUS_3             4              10
  CLUS_4             6               8
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOR3A MUTATED        2      1      4      4
  TOR3A WILD-TYPE     15      7     10     12
D5V3, multiclass
        clus
vv       TOR3A MUTATED TOR3A WILD-TYPE
  CLUS_1             2              15
  CLUS_2             1               7
  CLUS_3             4              10
  CLUS_4             4              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOR3A MUTATED        0      3      3      5
  TOR3A WILD-TYPE     16     13      2     13
D5V4, multiclass
        clus
vv       TOR3A MUTATED TOR3A WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              13
  CLUS_3             3               2
  CLUS_4             5              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOR3A MUTATED        5      2      4
  TOR3A WILD-TYPE     21     10     14
D5V5, multiclass
        clus
vv       TOR3A MUTATED TOR3A WILD-TYPE
  CLUS_1             5              21
  CLUS_2             2              10
  CLUS_3             4              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOR3A MUTATED        2      5      2      2      0
  TOR3A WILD-TYPE     11     14      6     12      2
D5V6, multiclass
        clus
vv       TOR3A MUTATED TOR3A WILD-TYPE
  CLUS_1             2              11
  CLUS_2             5              14
  CLUS_3             2               6
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOR3A MUTATED        5      2      4
  TOR3A WILD-TYPE     22     11     12
D5V7, multiclass
        clus
vv       TOR3A MUTATED TOR3A WILD-TYPE
  CLUS_1             5              22
  CLUS_2             2              11
  CLUS_3             4              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOR3A MUTATED        2      4      2      1      2      0
  TOR3A WILD-TYPE      7     13      5     11      4      5
D5V8, multiclass
        clus
vv       TOR3A MUTATED TOR3A WILD-TYPE
  CLUS_1             2               7
  CLUS_2             4              13
  CLUS_3             2               5
  CLUS_4             1              11
  CLUS_5             2               4
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = USP42 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP42 MUTATED        5      4      2      2      3
  USP42 WILD-TYPE     16     15      6      6      3
D6V1, multiclass
        clus
vv       USP42 MUTATED USP42 WILD-TYPE
  CLUS_1             5              16
  CLUS_2             4              15
  CLUS_3             2               6
  CLUS_4             2               6
  CLUS_5             3               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP42 MUTATED        2      4      0      3      2
  USP42 WILD-TYPE     11      4     14     11      5
D6V2, multiclass
        clus
vv       USP42 MUTATED USP42 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             4               4
  CLUS_3             0              14
  CLUS_4             3              11
  CLUS_5             2               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP42 MUTATED        3      2      3      3
  USP42 WILD-TYPE     14      6     11     13
D6V3, multiclass
        clus
vv       USP42 MUTATED USP42 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             2               6
  CLUS_3             3              11
  CLUS_4             3              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP42 MUTATED        3      4      1      3
  USP42 WILD-TYPE     13     12      4     15
D6V4, multiclass
        clus
vv       USP42 MUTATED USP42 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             4              12
  CLUS_3             1               4
  CLUS_4             3              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP42 MUTATED        6      3      2
  USP42 WILD-TYPE     20      9     16
D6V5, multiclass
        clus
vv       USP42 MUTATED USP42 WILD-TYPE
  CLUS_1             6              20
  CLUS_2             3               9
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP42 MUTATED        2      3      2      4      0
  USP42 WILD-TYPE     11     16      6     10      2
D6V6, multiclass
        clus
vv       USP42 MUTATED USP42 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             3              16
  CLUS_3             2               6
  CLUS_4             4              10
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP42 MUTATED        6      3      2
  USP42 WILD-TYPE     21     10     14
D6V7, multiclass
        clus
vv       USP42 MUTATED USP42 WILD-TYPE
  CLUS_1             6              21
  CLUS_2             3              10
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP42 MUTATED        1      3      3      4      0      0
  USP42 WILD-TYPE      8     14      4      8      6      5
D6V8, multiclass
        clus
vv       USP42 MUTATED USP42 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             3              14
  CLUS_3             3               4
  CLUS_4             4               8
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = CLDN23 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN23 MUTATED        2      5      1      0      2
  CLDN23 WILD-TYPE     19     14      7      8      4
D7V1, multiclass
        clus
vv       CLDN23 MUTATED CLDN23 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              5               14
  CLUS_3              1                7
  CLUS_4              0                8
  CLUS_5              2                4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN23 MUTATED        1      2      1      3      3
  CLDN23 WILD-TYPE     12      6     13     11      4
D7V2, multiclass
        clus
vv       CLDN23 MUTATED CLDN23 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              2                6
  CLUS_3              1               13
  CLUS_4              3               11
  CLUS_5              3                4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN23 MUTATED        1      1      1      7
  CLDN23 WILD-TYPE     16      7     13      9
D7V3, multiclass
        clus
vv       CLDN23 MUTATED CLDN23 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1                7
  CLUS_3              1               13
  CLUS_4              7                9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN23 MUTATED        3      1      0      6
  CLDN23 WILD-TYPE     13     15      5     12
D7V4, multiclass
        clus
vv       CLDN23 MUTATED CLDN23 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              1               15
  CLUS_3              0                5
  CLUS_4              6               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDN23 MUTATED        2      2      6
  CLDN23 WILD-TYPE     24     10     12
D7V5, multiclass
        clus
vv       CLDN23 MUTATED CLDN23 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               10
  CLUS_3              6               12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN23 MUTATED        1      4      3      1      1
  CLDN23 WILD-TYPE     12     15      5     13      1
D7V6, multiclass
        clus
vv       CLDN23 MUTATED CLDN23 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              4               15
  CLUS_3              3                5
  CLUS_4              1               13
  CLUS_5              1                1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLDN23 MUTATED        2      3      5
  CLDN23 WILD-TYPE     25     10     11
D7V7, multiclass
        clus
vv       CLDN23 MUTATED CLDN23 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              3               10
  CLUS_3              5               11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLDN23 MUTATED        0      4      2      1      1      2
  CLDN23 WILD-TYPE      9     13      5     11      5      3
D7V8, multiclass
        clus
vv       CLDN23 MUTATED CLDN23 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              4               13
  CLUS_3              2                5
  CLUS_4              1               11
  CLUS_5              1                5
  CLUS_6              2                3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        4      1      2      5      1
  TP53 WILD-TYPE     17     18      6      3      5
D8V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             17
  CLUS_2            1             18
  CLUS_3            2              6
  CLUS_4            5              3
  CLUS_5            1              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        2      3      3      2      1
  TP53 WILD-TYPE     11      5     11     12      6
D8V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            2             11
  CLUS_2            3              5
  CLUS_3            3             11
  CLUS_4            2             12
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        3      2      6      0
  TP53 WILD-TYPE     14      6      8     16
D8V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3             14
  CLUS_2            2              6
  CLUS_3            6              8
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED        4      4      1      2
  TP53 WILD-TYPE     12     12      4     16
D8V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             12
  CLUS_2            4             12
  CLUS_3            1              4
  CLUS_4            2             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        7      4      0
  TP53 WILD-TYPE     19      8     18
D8V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7             19
  CLUS_2            4              8
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED        4      2      2      3      0
  TP53 WILD-TYPE      9     17      6     11      2
D8V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4              9
  CLUS_2            2             17
  CLUS_3            2              6
  CLUS_4            3             11
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        7      4      0
  TP53 WILD-TYPE     20      9     16
D8V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7             20
  CLUS_2            4              9
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED        3      1      3      3      1      0
  TP53 WILD-TYPE      6     16      4      9      5      5
D8V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3              6
  CLUS_2            1             16
  CLUS_3            3              4
  CLUS_4            3              9
  CLUS_5            1              5
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = KCNK17 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNK17 MUTATED        2      1      1      3      2
  KCNK17 WILD-TYPE     19     18      7      5      4
D9V1, multiclass
        clus
vv       KCNK17 MUTATED KCNK17 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              1               18
  CLUS_3              1                7
  CLUS_4              3                5
  CLUS_5              2                4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNK17 MUTATED        0      2      5      1      0
  KCNK17 WILD-TYPE     13      6      9     13      7
D9V2, multiclass
        clus
vv       KCNK17 MUTATED KCNK17 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              2                6
  CLUS_3              5                9
  CLUS_4              1               13
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK17 MUTATED        1      1      5      1
  KCNK17 WILD-TYPE     16      7      9     15
D9V3, multiclass
        clus
vv       KCNK17 MUTATED KCNK17 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1                7
  CLUS_3              5                9
  CLUS_4              1               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK17 MUTATED        0      6      1      1
  KCNK17 WILD-TYPE     16     10      4     17
D9V4, multiclass
        clus
vv       KCNK17 MUTATED KCNK17 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              6               10
  CLUS_3              1                4
  CLUS_4              1               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNK17 MUTATED        4      2      2
  KCNK17 WILD-TYPE     22     10     16
D9V5, multiclass
        clus
vv       KCNK17 MUTATED KCNK17 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              2               10
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNK17 MUTATED        3      1      2      2      0
  KCNK17 WILD-TYPE     10     18      6     12      2
D9V6, multiclass
        clus
vv       KCNK17 MUTATED KCNK17 WILD-TYPE
  CLUS_1              3               10
  CLUS_2              1               18
  CLUS_3              2                6
  CLUS_4              2               12
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNK17 MUTATED        4      3      1
  KCNK17 WILD-TYPE     23     10     15
D9V7, multiclass
        clus
vv       KCNK17 MUTATED KCNK17 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              3               10
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNK17 MUTATED        3      1      1      2      0      1
  KCNK17 WILD-TYPE      6     16      6     10      6      4
D9V8, multiclass
        clus
vv       KCNK17 MUTATED KCNK17 WILD-TYPE
  CLUS_1              3                6
  CLUS_2              1               16
  CLUS_3              1                6
  CLUS_4              2               10
  CLUS_5              0                6
  CLUS_6              1                4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = LZTR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LZTR1 MUTATED        4      0      1      1      0
  LZTR1 WILD-TYPE     17     19      7      7      6
D10V1, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             4              17
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             1               7
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LZTR1 MUTATED        2      0      1      1      0
  LZTR1 WILD-TYPE     11      8     13     13      7
D10V2, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LZTR1 MUTATED        3      1      0      0
  LZTR1 WILD-TYPE     14      7     14     16
D10V3, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LZTR1 MUTATED        2      1      1      0
  LZTR1 WILD-TYPE     14     15      4     18
D10V4, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              15
  CLUS_3             1               4
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LZTR1 MUTATED        3      1      0
  LZTR1 WILD-TYPE     23     11     18
D10V5, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              11
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LZTR1 MUTATED        0      0      0      3      1
  LZTR1 WILD-TYPE     13     19      8     11      1
D10V6, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             3              11
  CLUS_5             1               1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LZTR1 MUTATED        3      1      0
  LZTR1 WILD-TYPE     24     12     16
D10V7, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             3              24
  CLUS_2             1              12
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LZTR1 MUTATED        0      0      0      3      1      0
  LZTR1 WILD-TYPE      9     17      7      9      5      5
D10V8, multiclass
        clus
vv       LZTR1 MUTATED LZTR1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             0              17
  CLUS_3             0               7
  CLUS_4             3               9
  CLUS_5             1               5
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = APOE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOE MUTATED        1      2      1      3      0
  APOE WILD-TYPE     20     17      7      5      6
D11V1, multiclass
        clus
vv       APOE MUTATED APOE WILD-TYPE
  CLUS_1            1             20
  CLUS_2            2             17
  CLUS_3            1              7
  CLUS_4            3              5
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOE MUTATED        1      0      3      2      0
  APOE WILD-TYPE     12      8     11     12      7
D11V2, multiclass
        clus
vv       APOE MUTATED APOE WILD-TYPE
  CLUS_1            1             12
  CLUS_2            0              8
  CLUS_3            3             11
  CLUS_4            2             12
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOE MUTATED        2      0      4      0
  APOE WILD-TYPE     15      8     10     16
D11V3, multiclass
        clus
vv       APOE MUTATED APOE WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0              8
  CLUS_3            4             10
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APOE MUTATED        1      3      1      1
  APOE WILD-TYPE     15     13      4     17
D11V4, multiclass
        clus
vv       APOE MUTATED APOE WILD-TYPE
  CLUS_1            1             15
  CLUS_2            3             13
  CLUS_3            1              4
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  APOE MUTATED        2      3      1
  APOE WILD-TYPE     24      9     17
D11V5, multiclass
        clus
vv       APOE MUTATED APOE WILD-TYPE
  CLUS_1            2             24
  CLUS_2            3              9
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APOE MUTATED        1      3      0      2      0
  APOE WILD-TYPE     12     16      8     12      2
D11V6, multiclass
        clus
vv       APOE MUTATED APOE WILD-TYPE
  CLUS_1            1             12
  CLUS_2            3             16
  CLUS_3            0              8
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  APOE MUTATED        2      4      0
  APOE WILD-TYPE     25      9     16
D11V7, multiclass
        clus
vv       APOE MUTATED APOE WILD-TYPE
  CLUS_1            2             25
  CLUS_2            4              9
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APOE MUTATED        0      2      1      2      1      0
  APOE WILD-TYPE      9     15      6     10      5      5
D11V8, multiclass
        clus
vv       APOE MUTATED APOE WILD-TYPE
  CLUS_1            0              9
  CLUS_2            2             15
  CLUS_3            1              6
  CLUS_4            2             10
  CLUS_5            1              5
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = CCDC105 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC105 MUTATED        1      2      1      3      0
  CCDC105 WILD-TYPE     20     17      7      5      6
D12V1, multiclass
        clus
vv       CCDC105 MUTATED CCDC105 WILD-TYPE
  CLUS_1               1                20
  CLUS_2               2                17
  CLUS_3               1                 7
  CLUS_4               3                 5
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC105 MUTATED        1      3      0      0      2
  CCDC105 WILD-TYPE     12      5     14     14      5
D12V2, multiclass
        clus
vv       CCDC105 MUTATED CCDC105 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               3                 5
  CLUS_3               0                14
  CLUS_4               0                14
  CLUS_5               2                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC105 MUTATED        1      1      2      2
  CCDC105 WILD-TYPE     16      7     12     14
D12V3, multiclass
        clus
vv       CCDC105 MUTATED CCDC105 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                 7
  CLUS_3               2                12
  CLUS_4               2                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC105 MUTATED        3      1      0      2
  CCDC105 WILD-TYPE     13     15      5     16
D12V4, multiclass
        clus
vv       CCDC105 MUTATED CCDC105 WILD-TYPE
  CLUS_1               3                13
  CLUS_2               1                15
  CLUS_3               0                 5
  CLUS_4               2                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC105 MUTATED        3      1      2
  CCDC105 WILD-TYPE     23     11     16
D12V5, multiclass
        clus
vv       CCDC105 MUTATED CCDC105 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               1                11
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC105 MUTATED        1      0      2      2      1
  CCDC105 WILD-TYPE     12     19      6     12      1
D12V6, multiclass
        clus
vv       CCDC105 MUTATED CCDC105 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               0                19
  CLUS_3               2                 6
  CLUS_4               2                12
  CLUS_5               1                 1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC105 MUTATED        3      2      1
  CCDC105 WILD-TYPE     24     11     15
D12V7, multiclass
        clus
vv       CCDC105 MUTATED CCDC105 WILD-TYPE
  CLUS_1               3                24
  CLUS_2               2                11
  CLUS_3               1                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC105 MUTATED        1      0      1      2      1      1
  CCDC105 WILD-TYPE      8     17      6     10      5      4
D12V8, multiclass
        clus
vv       CCDC105 MUTATED CCDC105 WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               0                17
  CLUS_3               1                 6
  CLUS_4               2                10
  CLUS_5               1                 5
  CLUS_6               1                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = RINL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINL MUTATED        6      1      0      1      0
  RINL WILD-TYPE     15     18      8      7      6
D13V1, multiclass
        clus
vv       RINL MUTATED RINL WILD-TYPE
  CLUS_1            6             15
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINL MUTATED        3      1      1      2      0
  RINL WILD-TYPE     10      7     13     12      7
D13V2, multiclass
        clus
vv       RINL MUTATED RINL WILD-TYPE
  CLUS_1            3             10
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            2             12
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RINL MUTATED        4      1      1      1
  RINL WILD-TYPE     13      7     13     15
D13V3, multiclass
        clus
vv       RINL MUTATED RINL WILD-TYPE
  CLUS_1            4             13
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RINL MUTATED        4      1      1      1
  RINL WILD-TYPE     12     15      4     17
D13V4, multiclass
        clus
vv       RINL MUTATED RINL WILD-TYPE
  CLUS_1            4             12
  CLUS_2            1             15
  CLUS_3            1              4
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RINL MUTATED        3      2      2
  RINL WILD-TYPE     23     10     16
D13V5, multiclass
        clus
vv       RINL MUTATED RINL WILD-TYPE
  CLUS_1            3             23
  CLUS_2            2             10
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINL MUTATED        0      3      0      4      0
  RINL WILD-TYPE     13     16      8     10      2
D13V6, multiclass
        clus
vv       RINL MUTATED RINL WILD-TYPE
  CLUS_1            0             13
  CLUS_2            3             16
  CLUS_3            0              8
  CLUS_4            4             10
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RINL MUTATED        3      3      1
  RINL WILD-TYPE     24     10     15
D13V7, multiclass
        clus
vv       RINL MUTATED RINL WILD-TYPE
  CLUS_1            3             24
  CLUS_2            3             10
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RINL MUTATED        0      3      0      4      0      0
  RINL WILD-TYPE      9     14      7      8      6      5
D13V8, multiclass
        clus
vv       RINL MUTATED RINL WILD-TYPE
  CLUS_1            0              9
  CLUS_2            3             14
  CLUS_3            0              7
  CLUS_4            4              8
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = MAL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAL2 MUTATED        4      5      2      1      0
  MAL2 WILD-TYPE     17     14      6      7      6
D14V1, multiclass
        clus
vv       MAL2 MUTATED MAL2 WILD-TYPE
  CLUS_1            4             17
  CLUS_2            5             14
  CLUS_3            2              6
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAL2 MUTATED        3      2      0      3      1
  MAL2 WILD-TYPE     10      6     14     11      6
D14V2, multiclass
        clus
vv       MAL2 MUTATED MAL2 WILD-TYPE
  CLUS_1            3             10
  CLUS_2            2              6
  CLUS_3            0             14
  CLUS_4            3             11
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAL2 MUTATED        4      2      0      3
  MAL2 WILD-TYPE     13      6     14     13
D14V3, multiclass
        clus
vv       MAL2 MUTATED MAL2 WILD-TYPE
  CLUS_1            4             13
  CLUS_2            2              6
  CLUS_3            0             14
  CLUS_4            3             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAL2 MUTATED        4      1      1      3
  MAL2 WILD-TYPE     12     15      4     15
D14V4, multiclass
        clus
vv       MAL2 MUTATED MAL2 WILD-TYPE
  CLUS_1            4             12
  CLUS_2            1             15
  CLUS_3            1              4
  CLUS_4            3             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAL2 MUTATED        2      4      3
  MAL2 WILD-TYPE     24      8     15
D14V5, multiclass
        clus
vv       MAL2 MUTATED MAL2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            4              8
  CLUS_3            3             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAL2 MUTATED        0      4      1      4      0
  MAL2 WILD-TYPE     13     15      7     10      2
D14V6, multiclass
        clus
vv       MAL2 MUTATED MAL2 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            4             15
  CLUS_3            1              7
  CLUS_4            4             10
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAL2 MUTATED        3      3      3
  MAL2 WILD-TYPE     24     10     13
D14V7, multiclass
        clus
vv       MAL2 MUTATED MAL2 WILD-TYPE
  CLUS_1            3             24
  CLUS_2            3             10
  CLUS_3            3             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAL2 MUTATED        0      3      0      4      1      1
  MAL2 WILD-TYPE      9     14      7      8      5      4
D14V8, multiclass
        clus
vv       MAL2 MUTATED MAL2 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            3             14
  CLUS_3            0              7
  CLUS_4            4              8
  CLUS_5            1              5
  CLUS_6            1              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = LRIG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRIG1 MUTATED        5      4      3      2      3
  LRIG1 WILD-TYPE     16     15      5      6      3
D15V1, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             5              16
  CLUS_2             4              15
  CLUS_3             3               5
  CLUS_4             2               6
  CLUS_5             3               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRIG1 MUTATED        3      2      2      4      1
  LRIG1 WILD-TYPE     10      6     12     10      6
D15V2, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             3              10
  CLUS_2             2               6
  CLUS_3             2              12
  CLUS_4             4              10
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        3      2      3      3
  LRIG1 WILD-TYPE     14      6     11     13
D15V3, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             2               6
  CLUS_3             3              11
  CLUS_4             3              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRIG1 MUTATED        3      2      1      5
  LRIG1 WILD-TYPE     13     14      4     13
D15V4, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             2              14
  CLUS_3             1               4
  CLUS_4             5              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG1 MUTATED        4      5      3
  LRIG1 WILD-TYPE     22      7     15
D15V5, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             5               7
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRIG1 MUTATED        1      4      3      4      0
  LRIG1 WILD-TYPE     12     15      5     10      2
D15V6, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              15
  CLUS_3             3               5
  CLUS_4             4              10
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRIG1 MUTATED        5      4      3
  LRIG1 WILD-TYPE     22      9     13
D15V7, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             5              22
  CLUS_2             4               9
  CLUS_3             3              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRIG1 MUTATED        1      3      2      4      1      1
  LRIG1 WILD-TYPE      8     14      5      8      5      4
D15V8, multiclass
        clus
vv       LRIG1 MUTATED LRIG1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             3              14
  CLUS_3             2               5
  CLUS_4             4               8
  CLUS_5             1               5
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = C19ORF10 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF10 MUTATED        3      2      0      2      0
  C19ORF10 WILD-TYPE     18     17      8      6      6
D16V1, multiclass
        clus
vv       C19ORF10 MUTATED C19ORF10 WILD-TYPE
  CLUS_1                3                 18
  CLUS_2                2                 17
  CLUS_3                0                  8
  CLUS_4                2                  6
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF10 MUTATED        2      1      3      0      0
  C19ORF10 WILD-TYPE     11      7     11     14      7
D16V2, multiclass
        clus
vv       C19ORF10 MUTATED C19ORF10 WILD-TYPE
  CLUS_1                2                 11
  CLUS_2                1                  7
  CLUS_3                3                 11
  CLUS_4                0                 14
  CLUS_5                0                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF10 MUTATED        2      2      2      0
  C19ORF10 WILD-TYPE     15      6     12     16
D16V3, multiclass
        clus
vv       C19ORF10 MUTATED C19ORF10 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                2                  6
  CLUS_3                2                 12
  CLUS_4                0                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF10 MUTATED        2      4      0      0
  C19ORF10 WILD-TYPE     14     12      5     18
D16V4, multiclass
        clus
vv       C19ORF10 MUTATED C19ORF10 WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                4                 12
  CLUS_3                0                  5
  CLUS_4                0                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF10 MUTATED        3      2      1
  C19ORF10 WILD-TYPE     23     10     17
D16V5, multiclass
        clus
vv       C19ORF10 MUTATED C19ORF10 WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                2                 10
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF10 MUTATED        2      2      0      2      0
  C19ORF10 WILD-TYPE     11     17      8     12      2
D16V6, multiclass
        clus
vv       C19ORF10 MUTATED C19ORF10 WILD-TYPE
  CLUS_1                2                 11
  CLUS_2                2                 17
  CLUS_3                0                  8
  CLUS_4                2                 12
  CLUS_5                0                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF10 MUTATED        4      2      0
  C19ORF10 WILD-TYPE     23     11     16
D16V7, multiclass
        clus
vv       C19ORF10 MUTATED C19ORF10 WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                2                 11
  CLUS_3                0                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF10 MUTATED        2      2      0      2      0      0
  C19ORF10 WILD-TYPE      7     15      7     10      6      5
D16V8, multiclass
        clus
vv       C19ORF10 MUTATED C19ORF10 WILD-TYPE
  CLUS_1                2                  7
  CLUS_2                2                 15
  CLUS_3                0                  7
  CLUS_4                2                 10
  CLUS_5                0                  6
  CLUS_6                0                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = C10ORF95 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF95 MUTATED        2      0      2      1      1
  C10ORF95 WILD-TYPE     19     19      6      7      5
D17V1, multiclass
        clus
vv       C10ORF95 MUTATED C10ORF95 WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                0                 19
  CLUS_3                2                  6
  CLUS_4                1                  7
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF95 MUTATED        1      0      3      1      1
  C10ORF95 WILD-TYPE     12      8     11     13      6
D17V2, multiclass
        clus
vv       C10ORF95 MUTATED C10ORF95 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                0                  8
  CLUS_3                3                 11
  CLUS_4                1                 13
  CLUS_5                1                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF95 MUTATED        2      2      1      1
  C10ORF95 WILD-TYPE     15      6     13     15
D17V3, multiclass
        clus
vv       C10ORF95 MUTATED C10ORF95 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                2                  6
  CLUS_3                1                 13
  CLUS_4                1                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF95 MUTATED        1      2      1      2
  C10ORF95 WILD-TYPE     15     14      4     16
D17V4, multiclass
        clus
vv       C10ORF95 MUTATED C10ORF95 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                2                 14
  CLUS_3                1                  4
  CLUS_4                2                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF95 MUTATED        4      1      1
  C10ORF95 WILD-TYPE     22     11     17
D17V5, multiclass
        clus
vv       C10ORF95 MUTATED C10ORF95 WILD-TYPE
  CLUS_1                4                 22
  CLUS_2                1                 11
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF95 MUTATED        1      2      1      1      1
  C10ORF95 WILD-TYPE     12     17      7     13      1
D17V6, multiclass
        clus
vv       C10ORF95 MUTATED C10ORF95 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                2                 17
  CLUS_3                1                  7
  CLUS_4                1                 13
  CLUS_5                1                  1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF95 MUTATED        4      1      1
  C10ORF95 WILD-TYPE     23     12     15
D17V7, multiclass
        clus
vv       C10ORF95 MUTATED C10ORF95 WILD-TYPE
  CLUS_1                4                 23
  CLUS_2                1                 12
  CLUS_3                1                 15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C10ORF95 MUTATED        1      1      1      1      2      0
  C10ORF95 WILD-TYPE      8     16      6     11      4      5
D17V8, multiclass
        clus
vv       C10ORF95 MUTATED C10ORF95 WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                1                 16
  CLUS_3                1                  6
  CLUS_4                1                 11
  CLUS_5                2                  4
  CLUS_6                0                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = SYT8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT8 MUTATED        1      4      2      1      1
  SYT8 WILD-TYPE     20     15      6      7      5
D18V1, multiclass
        clus
vv       SYT8 MUTATED SYT8 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            4             15
  CLUS_3            2              6
  CLUS_4            1              7
  CLUS_5            1              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT8 MUTATED        0      2      2      1      1
  SYT8 WILD-TYPE     13      6     12     13      6
D18V2, multiclass
        clus
vv       SYT8 MUTATED SYT8 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            2              6
  CLUS_3            2             12
  CLUS_4            1             13
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT8 MUTATED        0      3      1      2
  SYT8 WILD-TYPE     17      5     13     14
D18V3, multiclass
        clus
vv       SYT8 MUTATED SYT8 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            3              5
  CLUS_3            1             13
  CLUS_4            2             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT8 MUTATED        0      4      0      2
  SYT8 WILD-TYPE     16     12      5     16
D18V4, multiclass
        clus
vv       SYT8 MUTATED SYT8 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             12
  CLUS_3            0              5
  CLUS_4            2             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT8 MUTATED        3      1      2
  SYT8 WILD-TYPE     23     11     16
D18V5, multiclass
        clus
vv       SYT8 MUTATED SYT8 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            1             11
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT8 MUTATED        1      3      1      0      1
  SYT8 WILD-TYPE     12     16      7     14      1
D18V6, multiclass
        clus
vv       SYT8 MUTATED SYT8 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            3             16
  CLUS_3            1              7
  CLUS_4            0             14
  CLUS_5            1              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT8 MUTATED        3      1      2
  SYT8 WILD-TYPE     24     12     14
D18V7, multiclass
        clus
vv       SYT8 MUTATED SYT8 WILD-TYPE
  CLUS_1            3             24
  CLUS_2            1             12
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYT8 MUTATED        1      3      1      0      1      0
  SYT8 WILD-TYPE      8     14      6     12      5      5
D18V8, multiclass
        clus
vv       SYT8 MUTATED SYT8 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            3             14
  CLUS_3            1              6
  CLUS_4            0             12
  CLUS_5            1              5
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = IDUA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDUA MUTATED        4      1      1      2      1
  IDUA WILD-TYPE     17     18      7      6      5
D19V1, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            4             17
  CLUS_2            1             18
  CLUS_3            1              7
  CLUS_4            2              6
  CLUS_5            1              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDUA MUTATED        2      1      3      2      0
  IDUA WILD-TYPE     11      7     11     12      7
D19V2, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            2             11
  CLUS_2            1              7
  CLUS_3            3             11
  CLUS_4            2             12
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDUA MUTATED        4      2      1      1
  IDUA WILD-TYPE     13      6     13     15
D19V3, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            4             13
  CLUS_2            2              6
  CLUS_3            1             13
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDUA MUTATED        3      3      1      1
  IDUA WILD-TYPE     13     13      4     17
D19V4, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            3             13
  CLUS_2            3             13
  CLUS_3            1              4
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDUA MUTATED        3      4      1
  IDUA WILD-TYPE     23      8     17
D19V5, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            3             23
  CLUS_2            4              8
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDUA MUTATED        1      3      0      4      0
  IDUA WILD-TYPE     12     16      8     10      2
D19V6, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            1             12
  CLUS_2            3             16
  CLUS_3            0              8
  CLUS_4            4             10
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDUA MUTATED        3      4      1
  IDUA WILD-TYPE     24      9     15
D19V7, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            3             24
  CLUS_2            4              9
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDUA MUTATED        1      2      0      3      2      0
  IDUA WILD-TYPE      8     15      7      9      4      5
D19V8, multiclass
        clus
vv       IDUA MUTATED IDUA WILD-TYPE
  CLUS_1            1              8
  CLUS_2            2             15
  CLUS_3            0              7
  CLUS_4            3              9
  CLUS_5            2              4
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = HHIPL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HHIPL1 MUTATED        4      1      0      3      0
  HHIPL1 WILD-TYPE     17     18      8      5      6
D20V1, multiclass
        clus
vv       HHIPL1 MUTATED HHIPL1 WILD-TYPE
  CLUS_1              4               17
  CLUS_2              1               18
  CLUS_3              0                8
  CLUS_4              3                5
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HHIPL1 MUTATED        2      0      0      3      1
  HHIPL1 WILD-TYPE     11      8     14     11      6
D20V2, multiclass
        clus
vv       HHIPL1 MUTATED HHIPL1 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              0                8
  CLUS_3              0               14
  CLUS_4              3               11
  CLUS_5              1                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HHIPL1 MUTATED        4      0      1      1
  HHIPL1 WILD-TYPE     13      8     13     15
D20V3, multiclass
        clus
vv       HHIPL1 MUTATED HHIPL1 WILD-TYPE
  CLUS_1              4               13
  CLUS_2              0                8
  CLUS_3              1               13
  CLUS_4              1               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HHIPL1 MUTATED        2      1      2      1
  HHIPL1 WILD-TYPE     14     15      3     17
D20V4, multiclass
        clus
vv       HHIPL1 MUTATED HHIPL1 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              1               15
  CLUS_3              2                3
  CLUS_4              1               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HHIPL1 MUTATED        4      2      0
  HHIPL1 WILD-TYPE     22     10     18
D20V5, multiclass
        clus
vv       HHIPL1 MUTATED HHIPL1 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              2               10
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HHIPL1 MUTATED        2      1      1      2      0
  HHIPL1 WILD-TYPE     11     18      7     12      2
D20V6, multiclass
        clus
vv       HHIPL1 MUTATED HHIPL1 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              1               18
  CLUS_3              1                7
  CLUS_4              2               12
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HHIPL1 MUTATED        4      2      0
  HHIPL1 WILD-TYPE     23     11     16
D20V7, multiclass
        clus
vv       HHIPL1 MUTATED HHIPL1 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              2               11
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HHIPL1 MUTATED        1      0      2      2      1      0
  HHIPL1 WILD-TYPE      8     17      5     10      5      5
D20V8, multiclass
        clus
vv       HHIPL1 MUTATED HHIPL1 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              0               17
  CLUS_3              2                5
  CLUS_4              2               10
  CLUS_5              1                5
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = ASPDH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPDH MUTATED        2      2      1      3      0
  ASPDH WILD-TYPE     19     17      7      5      6
D21V1, multiclass
        clus
vv       ASPDH MUTATED ASPDH WILD-TYPE
  CLUS_1             2              19
  CLUS_2             2              17
  CLUS_3             1               7
  CLUS_4             3               5
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPDH MUTATED        3      1      3      1      0
  ASPDH WILD-TYPE     10      7     11     13      7
D21V2, multiclass
        clus
vv       ASPDH MUTATED ASPDH WILD-TYPE
  CLUS_1             3              10
  CLUS_2             1               7
  CLUS_3             3              11
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPDH MUTATED        3      0      5      0
  ASPDH WILD-TYPE     14      8      9     16
D21V3, multiclass
        clus
vv       ASPDH MUTATED ASPDH WILD-TYPE
  CLUS_1             3              14
  CLUS_2             0               8
  CLUS_3             5               9
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPDH MUTATED        3      4      0      1
  ASPDH WILD-TYPE     13     12      5     17
D21V4, multiclass
        clus
vv       ASPDH MUTATED ASPDH WILD-TYPE
  CLUS_1             3              13
  CLUS_2             4              12
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASPDH MUTATED        5      2      1
  ASPDH WILD-TYPE     21     10     17
D21V5, multiclass
        clus
vv       ASPDH MUTATED ASPDH WILD-TYPE
  CLUS_1             5              21
  CLUS_2             2              10
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPDH MUTATED        4      0      0      4      0
  ASPDH WILD-TYPE      9     19      8     10      2
D21V6, multiclass
        clus
vv       ASPDH MUTATED ASPDH WILD-TYPE
  CLUS_1             4               9
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             4              10
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASPDH MUTATED        6      1      1
  ASPDH WILD-TYPE     21     12     15
D21V7, multiclass
        clus
vv       ASPDH MUTATED ASPDH WILD-TYPE
  CLUS_1             6              21
  CLUS_2             1              12
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASPDH MUTATED        2      0      1      4      0      1
  ASPDH WILD-TYPE      7     17      6      8      6      4
D21V8, multiclass
        clus
vv       ASPDH MUTATED ASPDH WILD-TYPE
  CLUS_1             2               7
  CLUS_2             0              17
  CLUS_3             1               6
  CLUS_4             4               8
  CLUS_5             0               6
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = C1ORF106 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF106 MUTATED        4      2      2      1      0
  C1ORF106 WILD-TYPE     17     17      6      7      6
D22V1, multiclass
        clus
vv       C1ORF106 MUTATED C1ORF106 WILD-TYPE
  CLUS_1                4                 17
  CLUS_2                2                 17
  CLUS_3                2                  6
  CLUS_4                1                  7
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF106 MUTATED        3      0      2      1      2
  C1ORF106 WILD-TYPE     10      8     12     13      5
D22V2, multiclass
        clus
vv       C1ORF106 MUTATED C1ORF106 WILD-TYPE
  CLUS_1                3                 10
  CLUS_2                0                  8
  CLUS_3                2                 12
  CLUS_4                1                 13
  CLUS_5                2                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF106 MUTATED        4      2      1      1
  C1ORF106 WILD-TYPE     13      6     13     15
D22V3, multiclass
        clus
vv       C1ORF106 MUTATED C1ORF106 WILD-TYPE
  CLUS_1                4                 13
  CLUS_2                2                  6
  CLUS_3                1                 13
  CLUS_4                1                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF106 MUTATED        3      2      1      2
  C1ORF106 WILD-TYPE     13     14      4     16
D22V4, multiclass
        clus
vv       C1ORF106 MUTATED C1ORF106 WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                2                 14
  CLUS_3                1                  4
  CLUS_4                2                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF106 MUTATED        5      2      1
  C1ORF106 WILD-TYPE     21     10     17
D22V5, multiclass
        clus
vv       C1ORF106 MUTATED C1ORF106 WILD-TYPE
  CLUS_1                5                 21
  CLUS_2                2                 10
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF106 MUTATED        1      2      2      3      0
  C1ORF106 WILD-TYPE     12     17      6     11      2
D22V6, multiclass
        clus
vv       C1ORF106 MUTATED C1ORF106 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                2                 17
  CLUS_3                2                  6
  CLUS_4                3                 11
  CLUS_5                0                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF106 MUTATED        5      2      1
  C1ORF106 WILD-TYPE     22     11     15
D22V7, multiclass
        clus
vv       C1ORF106 MUTATED C1ORF106 WILD-TYPE
  CLUS_1                5                 22
  CLUS_2                2                 11
  CLUS_3                1                 15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1ORF106 MUTATED        1      2      1      2      1      1
  C1ORF106 WILD-TYPE      8     15      6     10      5      4
D22V8, multiclass
        clus
vv       C1ORF106 MUTATED C1ORF106 WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                2                 15
  CLUS_3                1                  6
  CLUS_4                2                 10
  CLUS_5                1                  5
  CLUS_6                1                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = THEM4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEM4 MUTATED        1      0      1      4      0
  THEM4 WILD-TYPE     20     19      7      4      6
D23V1, multiclass
        clus
vv       THEM4 MUTATED THEM4 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             4               4
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEM4 MUTATED        1      1      1      0      1
  THEM4 WILD-TYPE     12      7     13     14      6
D23V2, multiclass
        clus
vv       THEM4 MUTATED THEM4 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1               7
  CLUS_3             1              13
  CLUS_4             0              14
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THEM4 MUTATED        1      1      2      0
  THEM4 WILD-TYPE     16      7     12     16
D23V3, multiclass
        clus
vv       THEM4 MUTATED THEM4 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             2              12
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THEM4 MUTATED        2      1      0      1
  THEM4 WILD-TYPE     14     15      5     17
D23V4, multiclass
        clus
vv       THEM4 MUTATED THEM4 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              15
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THEM4 MUTATED        2      2      0
  THEM4 WILD-TYPE     24     10     18
D23V5, multiclass
        clus
vv       THEM4 MUTATED THEM4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              10
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEM4 MUTATED        0      0      1      3      0
  THEM4 WILD-TYPE     13     19      7     11      2
D23V6, multiclass
        clus
vv       THEM4 MUTATED THEM4 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             3              11
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THEM4 MUTATED        2      2      0
  THEM4 WILD-TYPE     25     11     16
D23V7, multiclass
        clus
vv       THEM4 MUTATED THEM4 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             2              11
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THEM4 MUTATED        0      0      1      3      0      0
  THEM4 WILD-TYPE      9     17      6      9      6      5
D23V8, multiclass
        clus
vv       THEM4 MUTATED THEM4 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             0              17
  CLUS_3             1               6
  CLUS_4             3               9
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = CTNNB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        3      2      1      1      0
  CTNNB1 WILD-TYPE     18     17      7      7      6
D24V1, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3               18
  CLUS_2              2               17
  CLUS_3              1                7
  CLUS_4              1                7
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        3      2      1      0      0
  CTNNB1 WILD-TYPE     10      6     13     14      7
D24V2, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3               10
  CLUS_2              2                6
  CLUS_3              1               13
  CLUS_4              0               14
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        4      2      0      0
  CTNNB1 WILD-TYPE     13      6     14     16
D24V3, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              4               13
  CLUS_2              2                6
  CLUS_3              0               14
  CLUS_4              0               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        5      1      0      0
  CTNNB1 WILD-TYPE     11     15      5     18
D24V4, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              5               11
  CLUS_2              1               15
  CLUS_3              0                5
  CLUS_4              0               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        1      5      0
  CTNNB1 WILD-TYPE     25      7     18
D24V5, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5                7
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        0      2      0      4      0
  CTNNB1 WILD-TYPE     13     17      8     10      2
D24V6, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              2               17
  CLUS_3              0                8
  CLUS_4              4               10
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        2      4      0
  CTNNB1 WILD-TYPE     25      9     16
D24V7, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              4                9
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNB1 MUTATED        0      2      0      3      1      0
  CTNNB1 WILD-TYPE      9     15      7      9      5      5
D24V8, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2               15
  CLUS_3              0                7
  CLUS_4              3                9
  CLUS_5              1                5
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = GDF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GDF1 MUTATED        1      2      0      2      0
  GDF1 WILD-TYPE     20     17      8      6      6
D25V1, multiclass
        clus
vv       GDF1 MUTATED GDF1 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            2              6
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GDF1 MUTATED        0      0      3      1      0
  GDF1 WILD-TYPE     13      8     11     13      7
D25V2, multiclass
        clus
vv       GDF1 MUTATED GDF1 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            0              8
  CLUS_3            3             11
  CLUS_4            1             13
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDF1 MUTATED        0      1      2      1
  GDF1 WILD-TYPE     17      7     12     15
D25V3, multiclass
        clus
vv       GDF1 MUTATED GDF1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1              7
  CLUS_3            2             12
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GDF1 MUTATED        0      3      0      1
  GDF1 WILD-TYPE     16     13      5     17
D25V4, multiclass
        clus
vv       GDF1 MUTATED GDF1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             13
  CLUS_3            0              5
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDF1 MUTATED        0      2      2
  GDF1 WILD-TYPE     26     10     16
D25V5, multiclass
        clus
vv       GDF1 MUTATED GDF1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             10
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GDF1 MUTATED        0      3      0      1      0
  GDF1 WILD-TYPE     13     16      8     13      2
D25V6, multiclass
        clus
vv       GDF1 MUTATED GDF1 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            3             16
  CLUS_3            0              8
  CLUS_4            1             13
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GDF1 MUTATED        0      3      1
  GDF1 WILD-TYPE     27     10     15
D25V7, multiclass
        clus
vv       GDF1 MUTATED GDF1 WILD-TYPE
  CLUS_1            0             27
  CLUS_2            3             10
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GDF1 MUTATED        0      3      0      1      0      0
  GDF1 WILD-TYPE      9     14      7     11      6      5
D25V8, multiclass
        clus
vv       GDF1 MUTATED GDF1 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            3             14
  CLUS_3            0              7
  CLUS_4            1             11
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = TSC22D2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D2 MUTATED        4      1      0      2      1
  TSC22D2 WILD-TYPE     17     18      8      6      5
D26V1, multiclass
        clus
vv       TSC22D2 MUTATED TSC22D2 WILD-TYPE
  CLUS_1               4                17
  CLUS_2               1                18
  CLUS_3               0                 8
  CLUS_4               2                 6
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D2 MUTATED        2      0      2      1      2
  TSC22D2 WILD-TYPE     11      8     12     13      5
D26V2, multiclass
        clus
vv       TSC22D2 MUTATED TSC22D2 WILD-TYPE
  CLUS_1               2                11
  CLUS_2               0                 8
  CLUS_3               2                12
  CLUS_4               1                13
  CLUS_5               2                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC22D2 MUTATED        3      0      2      2
  TSC22D2 WILD-TYPE     14      8     12     14
D26V3, multiclass
        clus
vv       TSC22D2 MUTATED TSC22D2 WILD-TYPE
  CLUS_1               3                14
  CLUS_2               0                 8
  CLUS_3               2                12
  CLUS_4               2                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC22D2 MUTATED        2      2      1      2
  TSC22D2 WILD-TYPE     14     14      4     16
D26V4, multiclass
        clus
vv       TSC22D2 MUTATED TSC22D2 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               2                14
  CLUS_3               1                 4
  CLUS_4               2                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSC22D2 MUTATED        3      2      2
  TSC22D2 WILD-TYPE     23     10     16
D26V5, multiclass
        clus
vv       TSC22D2 MUTATED TSC22D2 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               2                10
  CLUS_3               2                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D2 MUTATED        1      2      0      4      0
  TSC22D2 WILD-TYPE     12     17      8     10      2
D26V6, multiclass
        clus
vv       TSC22D2 MUTATED TSC22D2 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               2                17
  CLUS_3               0                 8
  CLUS_4               4                10
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSC22D2 MUTATED        3      2      2
  TSC22D2 WILD-TYPE     24     11     14
D26V7, multiclass
        clus
vv       TSC22D2 MUTATED TSC22D2 WILD-TYPE
  CLUS_1               3                24
  CLUS_2               2                11
  CLUS_3               2                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSC22D2 MUTATED        1      2      0      4      0      0
  TSC22D2 WILD-TYPE      8     15      7      8      6      5
D26V8, multiclass
        clus
vv       TSC22D2 MUTATED TSC22D2 WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               2                15
  CLUS_3               0                 7
  CLUS_4               4                 8
  CLUS_5               0                 6
  CLUS_6               0                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = ZAR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZAR1 MUTATED        3      3      0      2      3
  ZAR1 WILD-TYPE     18     16      8      6      3
D27V1, multiclass
        clus
vv       ZAR1 MUTATED ZAR1 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            3             16
  CLUS_3            0              8
  CLUS_4            2              6
  CLUS_5            3              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZAR1 MUTATED        3      1      1      2      2
  ZAR1 WILD-TYPE     10      7     13     12      5
D27V2, multiclass
        clus
vv       ZAR1 MUTATED ZAR1 WILD-TYPE
  CLUS_1            3             10
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            2             12
  CLUS_5            2              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZAR1 MUTATED        3      0      2      4
  ZAR1 WILD-TYPE     14      8     12     12
D27V3, multiclass
        clus
vv       ZAR1 MUTATED ZAR1 WILD-TYPE
  CLUS_1            3             14
  CLUS_2            0              8
  CLUS_3            2             12
  CLUS_4            4             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZAR1 MUTATED        3      2      0      4
  ZAR1 WILD-TYPE     13     14      5     14
D27V4, multiclass
        clus
vv       ZAR1 MUTATED ZAR1 WILD-TYPE
  CLUS_1            3             13
  CLUS_2            2             14
  CLUS_3            0              5
  CLUS_4            4             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZAR1 MUTATED        4      1      4
  ZAR1 WILD-TYPE     22     11     14
D27V5, multiclass
        clus
vv       ZAR1 MUTATED ZAR1 WILD-TYPE
  CLUS_1            4             22
  CLUS_2            1             11
  CLUS_3            4             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZAR1 MUTATED        2      4      1      2      0
  ZAR1 WILD-TYPE     11     15      7     12      2
D27V6, multiclass
        clus
vv       ZAR1 MUTATED ZAR1 WILD-TYPE
  CLUS_1            2             11
  CLUS_2            4             15
  CLUS_3            1              7
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZAR1 MUTATED        4      1      4
  ZAR1 WILD-TYPE     23     12     12
D27V7, multiclass
        clus
vv       ZAR1 MUTATED ZAR1 WILD-TYPE
  CLUS_1            4             23
  CLUS_2            1             12
  CLUS_3            4             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZAR1 MUTATED        2      4      0      2      0      1
  ZAR1 WILD-TYPE      7     13      7     10      6      4
D27V8, multiclass
        clus
vv       ZAR1 MUTATED ZAR1 WILD-TYPE
  CLUS_1            2              7
  CLUS_2            4             13
  CLUS_3            0              7
  CLUS_4            2             10
  CLUS_5            0              6
  CLUS_6            1              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = RGS9BP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS9BP MUTATED        1      3      2      2      0
  RGS9BP WILD-TYPE     20     16      6      6      6
D28V1, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              1               20
  CLUS_2              3               16
  CLUS_3              2                6
  CLUS_4              2                6
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS9BP MUTATED        3      0      3      1      1
  RGS9BP WILD-TYPE     10      8     11     13      6
D28V2, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              3               10
  CLUS_2              0                8
  CLUS_3              3               11
  CLUS_4              1               13
  CLUS_5              1                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS9BP MUTATED        2      1      2      2
  RGS9BP WILD-TYPE     15      7     12     14
D28V3, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              2               15
  CLUS_2              1                7
  CLUS_3              2               12
  CLUS_4              2               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS9BP MUTATED        2      3      0      2
  RGS9BP WILD-TYPE     14     13      5     16
D28V4, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              2               14
  CLUS_2              3               13
  CLUS_3              0                5
  CLUS_4              2               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RGS9BP MUTATED        2      3      3
  RGS9BP WILD-TYPE     24      9     15
D28V5, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              2               24
  CLUS_2              3                9
  CLUS_3              3               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS9BP MUTATED        2      2      1      3      0
  RGS9BP WILD-TYPE     11     17      7     11      2
D28V6, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              2               11
  CLUS_2              2               17
  CLUS_3              1                7
  CLUS_4              3               11
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RGS9BP MUTATED        3      2      3
  RGS9BP WILD-TYPE     24     11     13
D28V7, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              3               24
  CLUS_2              2               11
  CLUS_3              3               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS9BP MUTATED        1      2      0      3      0      2
  RGS9BP WILD-TYPE      8     15      7      9      6      3
D28V8, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              1                8
  CLUS_2              2               15
  CLUS_3              0                7
  CLUS_4              3                9
  CLUS_5              0                6
  CLUS_6              2                3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = OPRD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPRD1 MUTATED        5      4      1      2      0
  OPRD1 WILD-TYPE     16     15      7      6      6
D29V1, multiclass
        clus
vv       OPRD1 MUTATED OPRD1 WILD-TYPE
  CLUS_1             5              16
  CLUS_2             4              15
  CLUS_3             1               7
  CLUS_4             2               6
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPRD1 MUTATED        3      1      3      1      3
  OPRD1 WILD-TYPE     10      7     11     13      4
D29V2, multiclass
        clus
vv       OPRD1 MUTATED OPRD1 WILD-TYPE
  CLUS_1             3              10
  CLUS_2             1               7
  CLUS_3             3              11
  CLUS_4             1              13
  CLUS_5             3               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPRD1 MUTATED        4      2      3      2
  OPRD1 WILD-TYPE     13      6     11     14
D29V3, multiclass
        clus
vv       OPRD1 MUTATED OPRD1 WILD-TYPE
  CLUS_1             4              13
  CLUS_2             2               6
  CLUS_3             3              11
  CLUS_4             2              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPRD1 MUTATED        3      4      1      3
  OPRD1 WILD-TYPE     13     12      4     15
D29V4, multiclass
        clus
vv       OPRD1 MUTATED OPRD1 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             4              12
  CLUS_3             1               4
  CLUS_4             3              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPRD1 MUTATED        5      4      2
  OPRD1 WILD-TYPE     21      8     16
D29V5, multiclass
        clus
vv       OPRD1 MUTATED OPRD1 WILD-TYPE
  CLUS_1             5              21
  CLUS_2             4               8
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPRD1 MUTATED        1      5      1      4      0
  OPRD1 WILD-TYPE     12     14      7     10      2
D29V6, multiclass
        clus
vv       OPRD1 MUTATED OPRD1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             5              14
  CLUS_3             1               7
  CLUS_4             4              10
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPRD1 MUTATED        5      4      2
  OPRD1 WILD-TYPE     22      9     14
D29V7, multiclass
        clus
vv       OPRD1 MUTATED OPRD1 WILD-TYPE
  CLUS_1             5              22
  CLUS_2             4               9
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPRD1 MUTATED        1      5      1      4      0      0
  OPRD1 WILD-TYPE      8     12      6      8      6      5
D29V8, multiclass
        clus
vv       OPRD1 MUTATED OPRD1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             5              12
  CLUS_3             1               6
  CLUS_4             4               8
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = C16ORF3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF3 MUTATED        2      2      0      1      1
  C16ORF3 WILD-TYPE     19     17      8      7      5
D30V1, multiclass
        clus
vv       C16ORF3 MUTATED C16ORF3 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               2                17
  CLUS_3               0                 8
  CLUS_4               1                 7
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF3 MUTATED        0      4      0      0      1
  C16ORF3 WILD-TYPE     13      4     14     14      6
D30V2, multiclass
        clus
vv       C16ORF3 MUTATED C16ORF3 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               4                 4
  CLUS_3               0                14
  CLUS_4               0                14
  CLUS_5               1                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF3 MUTATED        1      1      2      1
  C16ORF3 WILD-TYPE     16      7     12     15
D30V3, multiclass
        clus
vv       C16ORF3 MUTATED C16ORF3 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                 7
  CLUS_3               2                12
  CLUS_4               1                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF3 MUTATED        2      2      0      1
  C16ORF3 WILD-TYPE     14     14      5     17
D30V4, multiclass
        clus
vv       C16ORF3 MUTATED C16ORF3 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               2                14
  CLUS_3               0                 5
  CLUS_4               1                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C16ORF3 MUTATED        2      2      1
  C16ORF3 WILD-TYPE     24     10     17
D30V5, multiclass
        clus
vv       C16ORF3 MUTATED C16ORF3 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                10
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF3 MUTATED        1      2      1      1      0
  C16ORF3 WILD-TYPE     12     17      7     13      2
D30V6, multiclass
        clus
vv       C16ORF3 MUTATED C16ORF3 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               2                17
  CLUS_3               1                 7
  CLUS_4               1                13
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C16ORF3 MUTATED        2      2      1
  C16ORF3 WILD-TYPE     25     11     15
D30V7, multiclass
        clus
vv       C16ORF3 MUTATED C16ORF3 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                11
  CLUS_3               1                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C16ORF3 MUTATED        1      2      1      0      1      0
  C16ORF3 WILD-TYPE      8     15      6     12      5      5
D30V8, multiclass
        clus
vv       C16ORF3 MUTATED C16ORF3 WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               2                15
  CLUS_3               1                 6
  CLUS_4               0                12
  CLUS_5               1                 5
  CLUS_6               0                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = FPGS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FPGS MUTATED        2      2      1      1      0
  FPGS WILD-TYPE     19     17      7      7      6
D31V1, multiclass
        clus
vv       FPGS MUTATED FPGS WILD-TYPE
  CLUS_1            2             19
  CLUS_2            2             17
  CLUS_3            1              7
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FPGS MUTATED        1      1      1      1      0
  FPGS WILD-TYPE     12      7     13     13      7
D31V2, multiclass
        clus
vv       FPGS MUTATED FPGS WILD-TYPE
  CLUS_1            1             12
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            1             13
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FPGS MUTATED        1      1      0      2
  FPGS WILD-TYPE     16      7     14     14
D31V3, multiclass
        clus
vv       FPGS MUTATED FPGS WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1              7
  CLUS_3            0             14
  CLUS_4            2             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FPGS MUTATED        2      0      0      2
  FPGS WILD-TYPE     14     16      5     16
D31V4, multiclass
        clus
vv       FPGS MUTATED FPGS WILD-TYPE
  CLUS_1            2             14
  CLUS_2            0             16
  CLUS_3            0              5
  CLUS_4            2             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FPGS MUTATED        0      2      2
  FPGS WILD-TYPE     26     10     16
D31V5, multiclass
        clus
vv       FPGS MUTATED FPGS WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             10
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FPGS MUTATED        0      2      0      2      0
  FPGS WILD-TYPE     13     17      8     12      2
D31V6, multiclass
        clus
vv       FPGS MUTATED FPGS WILD-TYPE
  CLUS_1            0             13
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FPGS MUTATED        1      1      2
  FPGS WILD-TYPE     26     12     14
D31V7, multiclass
        clus
vv       FPGS MUTATED FPGS WILD-TYPE
  CLUS_1            1             26
  CLUS_2            1             12
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FPGS MUTATED        0      2      0      2      0      0
  FPGS WILD-TYPE      9     15      7     10      6      5
D31V8, multiclass
        clus
vv       FPGS MUTATED FPGS WILD-TYPE
  CLUS_1            0              9
  CLUS_2            2             15
  CLUS_3            0              7
  CLUS_4            2             10
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = PLIN5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLIN5 MUTATED        1      3      0      1      0
  PLIN5 WILD-TYPE     20     16      8      7      6
D32V1, multiclass
        clus
vv       PLIN5 MUTATED PLIN5 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             3              16
  CLUS_3             0               8
  CLUS_4             1               7
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLIN5 MUTATED        1      2      1      1      0
  PLIN5 WILD-TYPE     12      6     13     13      7
D32V2, multiclass
        clus
vv       PLIN5 MUTATED PLIN5 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             2               6
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLIN5 MUTATED        1      1      2      1
  PLIN5 WILD-TYPE     16      7     12     15
D32V3, multiclass
        clus
vv       PLIN5 MUTATED PLIN5 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             2              12
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLIN5 MUTATED        1      3      0      1
  PLIN5 WILD-TYPE     15     13      5     17
D32V4, multiclass
        clus
vv       PLIN5 MUTATED PLIN5 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              13
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLIN5 MUTATED        1      2      2
  PLIN5 WILD-TYPE     25     10     16
D32V5, multiclass
        clus
vv       PLIN5 MUTATED PLIN5 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              10
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLIN5 MUTATED        1      4      0      0      0
  PLIN5 WILD-TYPE     12     15      8     14      2
D32V6, multiclass
        clus
vv       PLIN5 MUTATED PLIN5 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              15
  CLUS_3             0               8
  CLUS_4             0              14
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLIN5 MUTATED        1      3      1
  PLIN5 WILD-TYPE     26     10     15
D32V7, multiclass
        clus
vv       PLIN5 MUTATED PLIN5 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             3              10
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLIN5 MUTATED        1      4      0      0      0      0
  PLIN5 WILD-TYPE      8     13      7     12      6      5
D32V8, multiclass
        clus
vv       PLIN5 MUTATED PLIN5 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             4              13
  CLUS_3             0               7
  CLUS_4             0              12
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = IRX3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX3 MUTATED        3      0      1      1      0
  IRX3 WILD-TYPE     18     19      7      7      6
D33V1, multiclass
        clus
vv       IRX3 MUTATED IRX3 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            0             19
  CLUS_3            1              7
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX3 MUTATED        0      1      2      1      0
  IRX3 WILD-TYPE     13      7     12     13      7
D33V2, multiclass
        clus
vv       IRX3 MUTATED IRX3 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1              7
  CLUS_3            2             12
  CLUS_4            1             13
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX3 MUTATED        2      1      1      0
  IRX3 WILD-TYPE     15      7     13     16
D33V3, multiclass
        clus
vv       IRX3 MUTATED IRX3 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRX3 MUTATED        1      2      1      0
  IRX3 WILD-TYPE     15     14      4     18
D33V4, multiclass
        clus
vv       IRX3 MUTATED IRX3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             14
  CLUS_3            1              4
  CLUS_4            0             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX3 MUTATED        2      2      0
  IRX3 WILD-TYPE     24     10     18
D33V5, multiclass
        clus
vv       IRX3 MUTATED IRX3 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            2             10
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRX3 MUTATED        2      1      0      1      0
  IRX3 WILD-TYPE     11     18      8     13      2
D33V6, multiclass
        clus
vv       IRX3 MUTATED IRX3 WILD-TYPE
  CLUS_1            2             11
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            1             13
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRX3 MUTATED        2      2      0
  IRX3 WILD-TYPE     25     11     16
D33V7, multiclass
        clus
vv       IRX3 MUTATED IRX3 WILD-TYPE
  CLUS_1            2             25
  CLUS_2            2             11
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRX3 MUTATED        2      0      0      0      2      0
  IRX3 WILD-TYPE      7     17      7     12      4      5
D33V8, multiclass
        clus
vv       IRX3 MUTATED IRX3 WILD-TYPE
  CLUS_1            2              7
  CLUS_2            0             17
  CLUS_3            0              7
  CLUS_4            0             12
  CLUS_5            2              4
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = TRIOBP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIOBP MUTATED        5      4      2      1      0
  TRIOBP WILD-TYPE     16     15      6      7      6
D34V1, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              5               16
  CLUS_2              4               15
  CLUS_3              2                6
  CLUS_4              1                7
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIOBP MUTATED        3      1      0      4      2
  TRIOBP WILD-TYPE     10      7     14     10      5
D34V2, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              3               10
  CLUS_2              1                7
  CLUS_3              0               14
  CLUS_4              4               10
  CLUS_5              2                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIOBP MUTATED        3      1      2      3
  TRIOBP WILD-TYPE     14      7     12     13
D34V3, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              3               14
  CLUS_2              1                7
  CLUS_3              2               12
  CLUS_4              3               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIOBP MUTATED        3      0      1      5
  TRIOBP WILD-TYPE     13     16      4     13
D34V4, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              3               13
  CLUS_2              0               16
  CLUS_3              1                4
  CLUS_4              5               13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIOBP MUTATED        4      2      4
  TRIOBP WILD-TYPE     22     10     14
D34V5, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              4               22
  CLUS_2              2               10
  CLUS_3              4               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIOBP MUTATED        2      3      2      3      0
  TRIOBP WILD-TYPE     11     16      6     11      2
D34V6, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              2               11
  CLUS_2              3               16
  CLUS_3              2                6
  CLUS_4              3               11
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIOBP MUTATED        4      2      4
  TRIOBP WILD-TYPE     23     11     12
D34V7, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              4               23
  CLUS_2              2               11
  CLUS_3              4               12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIOBP MUTATED        1      2      1      3      1      2
  TRIOBP WILD-TYPE      8     15      6      9      5      3
D34V8, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              1                8
  CLUS_2              2               15
  CLUS_3              1                6
  CLUS_4              3                9
  CLUS_5              1                5
  CLUS_6              2                3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = KRTAP4-5 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP4-5 MUTATED        2      3      0      0      0
  KRTAP4-5 WILD-TYPE     19     16      8      8      6
D35V1, multiclass
        clus
vv       KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                3                 16
  CLUS_3                0                  8
  CLUS_4                0                  8
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP4-5 MUTATED        1      2      0      1      0
  KRTAP4-5 WILD-TYPE     12      6     14     13      7
D35V2, multiclass
        clus
vv       KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                2                  6
  CLUS_3                0                 14
  CLUS_4                1                 13
  CLUS_5                0                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP4-5 MUTATED        2      0      1      1
  KRTAP4-5 WILD-TYPE     15      8     13     15
D35V3, multiclass
        clus
vv       KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                0                  8
  CLUS_3                1                 13
  CLUS_4                1                 15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP4-5 MUTATED        2      1      0      1
  KRTAP4-5 WILD-TYPE     14     15      5     17
D35V4, multiclass
        clus
vv       KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE
  CLUS_1                2                 14
  CLUS_2                1                 15
  CLUS_3                0                  5
  CLUS_4                1                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP4-5 MUTATED        2      1      1
  KRTAP4-5 WILD-TYPE     24     11     17
D35V5, multiclass
        clus
vv       KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                1                 11
  CLUS_3                1                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP4-5 MUTATED        1      1      0      2      0
  KRTAP4-5 WILD-TYPE     12     18      8     12      2
D35V6, multiclass
        clus
vv       KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                1                 18
  CLUS_3                0                  8
  CLUS_4                2                 12
  CLUS_5                0                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP4-5 MUTATED        2      1      1
  KRTAP4-5 WILD-TYPE     25     12     15
D35V7, multiclass
        clus
vv       KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                1                 12
  CLUS_3                1                 15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP4-5 MUTATED        1      1      0      1      1      0
  KRTAP4-5 WILD-TYPE      8     16      7     11      5      5
D35V8, multiclass
        clus
vv       KRTAP4-5 MUTATED KRTAP4-5 WILD-TYPE
  CLUS_1                1                  8
  CLUS_2                1                 16
  CLUS_3                0                  7
  CLUS_4                1                 11
  CLUS_5                1                  5
  CLUS_6                0                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = ATXN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN1 MUTATED        3      3      3      0      1
  ATXN1 WILD-TYPE     18     16      5      8      5
D36V1, multiclass
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             3              16
  CLUS_3             3               5
  CLUS_4             0               8
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN1 MUTATED        1      4      2      1      1
  ATXN1 WILD-TYPE     12      4     12     13      6
D36V2, multiclass
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4               4
  CLUS_3             2              12
  CLUS_4             1              13
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN1 MUTATED        2      3      3      1
  ATXN1 WILD-TYPE     15      5     11     15
D36V3, multiclass
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             3               5
  CLUS_3             3              11
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN1 MUTATED        3      4      0      2
  ATXN1 WILD-TYPE     13     12      5     16
D36V4, multiclass
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             4              12
  CLUS_3             0               5
  CLUS_4             2              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN1 MUTATED        5      3      1
  ATXN1 WILD-TYPE     21      9     17
D36V5, multiclass
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  CLUS_1             5              21
  CLUS_2             3               9
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN1 MUTATED        2      2      2      3      0
  ATXN1 WILD-TYPE     11     17      6     11      2
D36V6, multiclass
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             2              17
  CLUS_3             2               6
  CLUS_4             3              11
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATXN1 MUTATED        5      3      1
  ATXN1 WILD-TYPE     22     10     15
D36V7, multiclass
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  CLUS_1             5              22
  CLUS_2             3              10
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATXN1 MUTATED        2      2      2      2      1      0
  ATXN1 WILD-TYPE      7     15      5     10      5      5
D36V8, multiclass
        clus
vv       ATXN1 MUTATED ATXN1 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             2              15
  CLUS_3             2               5
  CLUS_4             2              10
  CLUS_5             1               5
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = ZNF628 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF628 MUTATED        4      1      0      2      0
  ZNF628 WILD-TYPE     17     18      8      6      6
D37V1, multiclass
        clus
vv       ZNF628 MUTATED ZNF628 WILD-TYPE
  CLUS_1              4               17
  CLUS_2              1               18
  CLUS_3              0                8
  CLUS_4              2                6
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF628 MUTATED        2      1      1      1      0
  ZNF628 WILD-TYPE     11      7     13     13      7
D37V2, multiclass
        clus
vv       ZNF628 MUTATED ZNF628 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              1                7
  CLUS_3              1               13
  CLUS_4              1               13
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF628 MUTATED        3      1      1      0
  ZNF628 WILD-TYPE     14      7     13     16
D37V3, multiclass
        clus
vv       ZNF628 MUTATED ZNF628 WILD-TYPE
  CLUS_1              3               14
  CLUS_2              1                7
  CLUS_3              1               13
  CLUS_4              0               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF628 MUTATED        3      1      1      0
  ZNF628 WILD-TYPE     13     15      4     18
D37V4, multiclass
        clus
vv       ZNF628 MUTATED ZNF628 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              1               15
  CLUS_3              1                4
  CLUS_4              0               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF628 MUTATED        1      3      1
  ZNF628 WILD-TYPE     25      9     17
D37V5, multiclass
        clus
vv       ZNF628 MUTATED ZNF628 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3                9
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF628 MUTATED        0      3      0      2      0
  ZNF628 WILD-TYPE     13     16      8     12      2
D37V6, multiclass
        clus
vv       ZNF628 MUTATED ZNF628 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              3               16
  CLUS_3              0                8
  CLUS_4              2               12
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF628 MUTATED        2      3      0
  ZNF628 WILD-TYPE     25     10     16
D37V7, multiclass
        clus
vv       ZNF628 MUTATED ZNF628 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              3               10
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF628 MUTATED        0      2      0      2      1      0
  ZNF628 WILD-TYPE      9     15      7     10      5      5
D37V8, multiclass
        clus
vv       ZNF628 MUTATED ZNF628 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              2               15
  CLUS_3              0                7
  CLUS_4              2               10
  CLUS_5              1                5
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = WDR34 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR34 MUTATED        2      1      0      1      1
  WDR34 WILD-TYPE     19     18      8      7      5
D38V1, multiclass
        clus
vv       WDR34 MUTATED WDR34 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             1               7
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR34 MUTATED        2      0      1      1      1
  WDR34 WILD-TYPE     11      8     13     13      6
D38V2, multiclass
        clus
vv       WDR34 MUTATED WDR34 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR34 MUTATED        2      0      1      2
  WDR34 WILD-TYPE     15      8     13     14
D38V3, multiclass
        clus
vv       WDR34 MUTATED WDR34 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             2              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR34 MUTATED        2      2      0      1
  WDR34 WILD-TYPE     14     14      5     17
D38V4, multiclass
        clus
vv       WDR34 MUTATED WDR34 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              14
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR34 MUTATED        3      1      1
  WDR34 WILD-TYPE     23     11     17
D38V5, multiclass
        clus
vv       WDR34 MUTATED WDR34 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              11
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR34 MUTATED        1      1      0      3      0
  WDR34 WILD-TYPE     12     18      8     11      2
D38V6, multiclass
        clus
vv       WDR34 MUTATED WDR34 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             3              11
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR34 MUTATED        3      1      1
  WDR34 WILD-TYPE     24     12     15
D38V7, multiclass
        clus
vv       WDR34 MUTATED WDR34 WILD-TYPE
  CLUS_1             3              24
  CLUS_2             1              12
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR34 MUTATED        0      1      1      3      0      0
  WDR34 WILD-TYPE      9     16      6      9      6      5
D38V8, multiclass
        clus
vv       WDR34 MUTATED WDR34 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             1              16
  CLUS_3             1               6
  CLUS_4             3               9
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = BTBD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED        2      2      1      1      0
  BTBD11 WILD-TYPE     19     17      7      7      6
D39V1, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              2               17
  CLUS_3              1                7
  CLUS_4              1                7
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED        1      1      1      0      2
  BTBD11 WILD-TYPE     12      7     13     14      5
D39V2, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              1                7
  CLUS_3              1               13
  CLUS_4              0               14
  CLUS_5              2                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        1      0      3      1
  BTBD11 WILD-TYPE     16      8     11     15
D39V3, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0                8
  CLUS_3              3               11
  CLUS_4              1               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        1      2      0      2
  BTBD11 WILD-TYPE     15     14      5     16
D39V4, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               14
  CLUS_3              0                5
  CLUS_4              2               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED        4      0      1
  BTBD11 WILD-TYPE     22     12     17
D39V5, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              0               12
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED        2      0      2      1      0
  BTBD11 WILD-TYPE     11     19      6     13      2
D39V6, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              0               19
  CLUS_3              2                6
  CLUS_4              1               13
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED        4      0      1
  BTBD11 WILD-TYPE     23     13     15
D39V7, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              0               13
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD11 MUTATED        2      0      1      1      0      1
  BTBD11 WILD-TYPE      7     17      6     11      6      4
D39V8, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2                7
  CLUS_2              0               17
  CLUS_3              1                6
  CLUS_4              1               11
  CLUS_5              0                6
  CLUS_6              1                4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = GARS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GARS MUTATED        6      4      3      4      4
  GARS WILD-TYPE     15     15      5      4      2
D40V1, multiclass
        clus
vv       GARS MUTATED GARS WILD-TYPE
  CLUS_1            6             15
  CLUS_2            4             15
  CLUS_3            3              5
  CLUS_4            4              4
  CLUS_5            4              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GARS MUTATED        2      0      4      6      4
  GARS WILD-TYPE     11      8     10      8      3
D40V2, multiclass
        clus
vv       GARS MUTATED GARS WILD-TYPE
  CLUS_1            2             11
  CLUS_2            0              8
  CLUS_3            4             10
  CLUS_4            6              8
  CLUS_5            4              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GARS MUTATED        4      1      4      7
  GARS WILD-TYPE     13      7     10      9
D40V3, multiclass
        clus
vv       GARS MUTATED GARS WILD-TYPE
  CLUS_1            4             13
  CLUS_2            1              7
  CLUS_3            4             10
  CLUS_4            7              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GARS MUTATED        2      3      3      8
  GARS WILD-TYPE     14     13      2     10
D40V4, multiclass
        clus
vv       GARS MUTATED GARS WILD-TYPE
  CLUS_1            2             14
  CLUS_2            3             13
  CLUS_3            3              2
  CLUS_4            8             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GARS MUTATED        6      2      8
  GARS WILD-TYPE     20     10     10
D40V5, multiclass
        clus
vv       GARS MUTATED GARS WILD-TYPE
  CLUS_1            6             20
  CLUS_2            2             10
  CLUS_3            8             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GARS MUTATED        3      7      4      2      0
  GARS WILD-TYPE     10     12      4     12      2
D40V6, multiclass
        clus
vv       GARS MUTATED GARS WILD-TYPE
  CLUS_1            3             10
  CLUS_2            7             12
  CLUS_3            4              4
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GARS MUTATED        6      2      8
  GARS WILD-TYPE     21     11      8
D40V7, multiclass
        clus
vv       GARS MUTATED GARS WILD-TYPE
  CLUS_1            6             21
  CLUS_2            2             11
  CLUS_3            8              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GARS MUTATED        2      6      2      1      2      3
  GARS WILD-TYPE      7     11      5     11      4      2
D40V8, multiclass
        clus
vv       GARS MUTATED GARS WILD-TYPE
  CLUS_1            2              7
  CLUS_2            6             11
  CLUS_3            2              5
  CLUS_4            1             11
  CLUS_5            2              4
  CLUS_6            3              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = ZNF598 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF598 MUTATED        6      2      1      3      1
  ZNF598 WILD-TYPE     15     17      7      5      5
D41V1, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              6               15
  CLUS_2              2               17
  CLUS_3              1                7
  CLUS_4              3                5
  CLUS_5              1                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF598 MUTATED        3      0      2      4      0
  ZNF598 WILD-TYPE     10      8     12     10      7
D41V2, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              3               10
  CLUS_2              0                8
  CLUS_3              2               12
  CLUS_4              4               10
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF598 MUTATED        4      0      3      2
  ZNF598 WILD-TYPE     13      8     11     14
D41V3, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              4               13
  CLUS_2              0                8
  CLUS_3              3               11
  CLUS_4              2               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF598 MUTATED        3      2      1      3
  ZNF598 WILD-TYPE     13     14      4     15
D41V4, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              2               14
  CLUS_3              1                4
  CLUS_4              3               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF598 MUTATED        4      2      3
  ZNF598 WILD-TYPE     22     10     15
D41V5, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              2               10
  CLUS_3              3               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF598 MUTATED        1      3      0      5      0
  ZNF598 WILD-TYPE     12     16      8      9      2
D41V6, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              3               16
  CLUS_3              0                8
  CLUS_4              5                9
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF598 MUTATED        4      2      3
  ZNF598 WILD-TYPE     23     11     13
D41V7, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              2               11
  CLUS_3              3               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF598 MUTATED        1      3      0      5      0      0
  ZNF598 WILD-TYPE      8     14      7      7      6      5
D41V8, multiclass
        clus
vv       ZNF598 MUTATED ZNF598 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              3               14
  CLUS_3              0                7
  CLUS_4              5                7
  CLUS_5              0                6
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = BHLHE22 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BHLHE22 MUTATED        1      2      2      0      0
  BHLHE22 WILD-TYPE     20     17      6      8      6
D42V1, multiclass
        clus
vv       BHLHE22 MUTATED BHLHE22 WILD-TYPE
  CLUS_1               1                20
  CLUS_2               2                17
  CLUS_3               2                 6
  CLUS_4               0                 8
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BHLHE22 MUTATED        0      3      1      1      0
  BHLHE22 WILD-TYPE     13      5     13     13      7
D42V2, multiclass
        clus
vv       BHLHE22 MUTATED BHLHE22 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               3                 5
  CLUS_3               1                13
  CLUS_4               1                13
  CLUS_5               0                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHE22 MUTATED        0      2      2      1
  BHLHE22 WILD-TYPE     17      6     12     15
D42V3, multiclass
        clus
vv       BHLHE22 MUTATED BHLHE22 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               2                 6
  CLUS_3               2                12
  CLUS_4               1                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BHLHE22 MUTATED        2      2      0      1
  BHLHE22 WILD-TYPE     14     14      5     17
D42V4, multiclass
        clus
vv       BHLHE22 MUTATED BHLHE22 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               2                14
  CLUS_3               0                 5
  CLUS_4               1                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BHLHE22 MUTATED        2      2      1
  BHLHE22 WILD-TYPE     24     10     17
D42V5, multiclass
        clus
vv       BHLHE22 MUTATED BHLHE22 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                10
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BHLHE22 MUTATED        2      2      0      1      0
  BHLHE22 WILD-TYPE     11     17      8     13      2
D42V6, multiclass
        clus
vv       BHLHE22 MUTATED BHLHE22 WILD-TYPE
  CLUS_1               2                11
  CLUS_2               2                17
  CLUS_3               0                 8
  CLUS_4               1                13
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  BHLHE22 MUTATED        2      2      1
  BHLHE22 WILD-TYPE     25     11     15
D42V7, multiclass
        clus
vv       BHLHE22 MUTATED BHLHE22 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                11
  CLUS_3               1                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BHLHE22 MUTATED        2      2      0      1      0      0
  BHLHE22 WILD-TYPE      7     15      7     11      6      5
D42V8, multiclass
        clus
vv       BHLHE22 MUTATED BHLHE22 WILD-TYPE
  CLUS_1               2                 7
  CLUS_2               2                15
  CLUS_3               0                 7
  CLUS_4               1                11
  CLUS_5               0                 6
  CLUS_6               0                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = PTPLA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPLA MUTATED        2      0      1      1      0
  PTPLA WILD-TYPE     19     19      7      7      6
D43V1, multiclass
        clus
vv       PTPLA MUTATED PTPLA WILD-TYPE
  CLUS_1             2              19
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             1               7
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPLA MUTATED        0      1      2      0      0
  PTPLA WILD-TYPE     13      7     12     14      7
D43V2, multiclass
        clus
vv       PTPLA MUTATED PTPLA WILD-TYPE
  CLUS_1             0              13
  CLUS_2             1               7
  CLUS_3             2              12
  CLUS_4             0              14
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPLA MUTATED        1      0      2      0
  PTPLA WILD-TYPE     16      8     12     16
D43V3, multiclass
        clus
vv       PTPLA MUTATED PTPLA WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPLA MUTATED        1      2      0      0
  PTPLA WILD-TYPE     15     14      5     18
D43V4, multiclass
        clus
vv       PTPLA MUTATED PTPLA WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              14
  CLUS_3             0               5
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPLA MUTATED        1      1      1
  PTPLA WILD-TYPE     25     11     17
D43V5, multiclass
        clus
vv       PTPLA MUTATED PTPLA WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              11
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPLA MUTATED        1      1      0      1      0
  PTPLA WILD-TYPE     12     18      8     13      2
D43V6, multiclass
        clus
vv       PTPLA MUTATED PTPLA WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPLA MUTATED        1      2      0
  PTPLA WILD-TYPE     26     11     16
D43V7, multiclass
        clus
vv       PTPLA MUTATED PTPLA WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              11
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPLA MUTATED        1      1      0      0      1      0
  PTPLA WILD-TYPE      8     16      7     12      5      5
D43V8, multiclass
        clus
vv       PTPLA MUTATED PTPLA WILD-TYPE
  CLUS_1             1               8
  CLUS_2             1              16
  CLUS_3             0               7
  CLUS_4             0              12
  CLUS_5             1               5
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = CD320 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD320 MUTATED        2      1      1      0      0
  CD320 WILD-TYPE     19     18      7      8      6
D44V1, multiclass
        clus
vv       CD320 MUTATED CD320 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD320 MUTATED        1      0      1      2      0
  CD320 WILD-TYPE     12      8     13     12      7
D44V2, multiclass
        clus
vv       CD320 MUTATED CD320 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             2              12
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD320 MUTATED        1      0      2      1
  CD320 WILD-TYPE     16      8     12     15
D44V3, multiclass
        clus
vv       CD320 MUTATED CD320 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD320 MUTATED        1      1      1      1
  CD320 WILD-TYPE     15     15      4     17
D44V4, multiclass
        clus
vv       CD320 MUTATED CD320 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              15
  CLUS_3             1               4
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD320 MUTATED        3      1      0
  CD320 WILD-TYPE     23     11     18
D44V5, multiclass
        clus
vv       CD320 MUTATED CD320 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              11
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD320 MUTATED        1      0      2      1      0
  CD320 WILD-TYPE     12     19      6     13      2
D44V6, multiclass
        clus
vv       CD320 MUTATED CD320 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0              19
  CLUS_3             2               6
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD320 MUTATED        4      0      0
  CD320 WILD-TYPE     23     13     16
D44V7, multiclass
        clus
vv       CD320 MUTATED CD320 WILD-TYPE
  CLUS_1             4              23
  CLUS_2             0              13
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD320 MUTATED        1      0      2      1      0      0
  CD320 WILD-TYPE      8     17      5     11      6      5
D44V8, multiclass
        clus
vv       CD320 MUTATED CD320 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             0              17
  CLUS_3             2               5
  CLUS_4             1              11
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = KIAA1984 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1984 MUTATED        1      0      1      1      1
  KIAA1984 WILD-TYPE     20     19      7      7      5
D45V1, multiclass
        clus
vv       KIAA1984 MUTATED KIAA1984 WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                0                 19
  CLUS_3                1                  7
  CLUS_4                1                  7
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1984 MUTATED        0      1      2      1      0
  KIAA1984 WILD-TYPE     13      7     12     13      7
D45V2, multiclass
        clus
vv       KIAA1984 MUTATED KIAA1984 WILD-TYPE
  CLUS_1                0                 13
  CLUS_2                1                  7
  CLUS_3                2                 12
  CLUS_4                1                 13
  CLUS_5                0                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1984 MUTATED        1      0      3      0
  KIAA1984 WILD-TYPE     16      8     11     16
D45V3, multiclass
        clus
vv       KIAA1984 MUTATED KIAA1984 WILD-TYPE
  CLUS_1                1                 16
  CLUS_2                0                  8
  CLUS_3                3                 11
  CLUS_4                0                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1984 MUTATED        0      3      1      0
  KIAA1984 WILD-TYPE     16     13      4     18
D45V4, multiclass
        clus
vv       KIAA1984 MUTATED KIAA1984 WILD-TYPE
  CLUS_1                0                 16
  CLUS_2                3                 13
  CLUS_3                1                  4
  CLUS_4                0                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1984 MUTATED        1      3      0
  KIAA1984 WILD-TYPE     25      9     18
D45V5, multiclass
        clus
vv       KIAA1984 MUTATED KIAA1984 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                3                  9
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1984 MUTATED        0      1      1      2      0
  KIAA1984 WILD-TYPE     13     18      7     12      2
D45V6, multiclass
        clus
vv       KIAA1984 MUTATED KIAA1984 WILD-TYPE
  CLUS_1                0                 13
  CLUS_2                1                 18
  CLUS_3                1                  7
  CLUS_4                2                 12
  CLUS_5                0                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1984 MUTATED        1      3      0
  KIAA1984 WILD-TYPE     26     10     16
D45V7, multiclass
        clus
vv       KIAA1984 MUTATED KIAA1984 WILD-TYPE
  CLUS_1                1                 26
  CLUS_2                3                 10
  CLUS_3                0                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1984 MUTATED        0      1      1      2      0      0
  KIAA1984 WILD-TYPE      9     16      6     10      6      5
D45V8, multiclass
        clus
vv       KIAA1984 MUTATED KIAA1984 WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                1                 16
  CLUS_3                1                  6
  CLUS_4                2                 10
  CLUS_5                0                  6
  CLUS_6                0                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = TPO MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPO MUTATED        6      2      1      1      2
  TPO WILD-TYPE     15     17      7      7      4
D46V1, multiclass
        clus
vv       TPO MUTATED TPO WILD-TYPE
  CLUS_1           6            15
  CLUS_2           2            17
  CLUS_3           1             7
  CLUS_4           1             7
  CLUS_5           2             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPO MUTATED        3      3      1      2      0
  TPO WILD-TYPE     10      5     13     12      7
D46V2, multiclass
        clus
vv       TPO MUTATED TPO WILD-TYPE
  CLUS_1           3            10
  CLUS_2           3             5
  CLUS_3           1            13
  CLUS_4           2            12
  CLUS_5           0             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPO MUTATED        5      2      1      1
  TPO WILD-TYPE     12      6     13     15
D46V3, multiclass
        clus
vv       TPO MUTATED TPO WILD-TYPE
  CLUS_1           5            12
  CLUS_2           2             6
  CLUS_3           1            13
  CLUS_4           1            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPO MUTATED        4      2      2      1
  TPO WILD-TYPE     12     14      3     17
D46V4, multiclass
        clus
vv       TPO MUTATED TPO WILD-TYPE
  CLUS_1           4            12
  CLUS_2           2            14
  CLUS_3           2             3
  CLUS_4           1            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TPO MUTATED        4      4      1
  TPO WILD-TYPE     22      8     17
D46V5, multiclass
        clus
vv       TPO MUTATED TPO WILD-TYPE
  CLUS_1           4            22
  CLUS_2           4             8
  CLUS_3           1            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPO MUTATED        1      2      1      5      0
  TPO WILD-TYPE     12     17      7      9      2
D46V6, multiclass
        clus
vv       TPO MUTATED TPO WILD-TYPE
  CLUS_1           1            12
  CLUS_2           2            17
  CLUS_3           1             7
  CLUS_4           5             9
  CLUS_5           0             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TPO MUTATED        4      4      1
  TPO WILD-TYPE     23      9     15
D46V7, multiclass
        clus
vv       TPO MUTATED TPO WILD-TYPE
  CLUS_1           4            23
  CLUS_2           4             9
  CLUS_3           1            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TPO MUTATED        1      1      0      5      1      1
  TPO WILD-TYPE      8     16      7      7      5      4
D46V8, multiclass
        clus
vv       TPO MUTATED TPO WILD-TYPE
  CLUS_1           1             8
  CLUS_2           1            16
  CLUS_3           0             7
  CLUS_4           5             7
  CLUS_5           1             5
  CLUS_6           1             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = AATK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AATK MUTATED        0      4      1      0      1
  AATK WILD-TYPE     21     15      7      8      5
D47V1, multiclass
        clus
vv       AATK MUTATED AATK WILD-TYPE
  CLUS_1            0             21
  CLUS_2            4             15
  CLUS_3            1              7
  CLUS_4            0              8
  CLUS_5            1              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AATK MUTATED        0      1      2      0      1
  AATK WILD-TYPE     13      7     12     14      6
D47V2, multiclass
        clus
vv       AATK MUTATED AATK WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1              7
  CLUS_3            2             12
  CLUS_4            0             14
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AATK MUTATED        0      1      2      1
  AATK WILD-TYPE     17      7     12     15
D47V3, multiclass
        clus
vv       AATK MUTATED AATK WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1              7
  CLUS_3            2             12
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AATK MUTATED        0      3      0      1
  AATK WILD-TYPE     16     13      5     17
D47V4, multiclass
        clus
vv       AATK MUTATED AATK WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             13
  CLUS_3            0              5
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AATK MUTATED        2      1      1
  AATK WILD-TYPE     24     11     17
D47V5, multiclass
        clus
vv       AATK MUTATED AATK WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             11
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AATK MUTATED        2      2      0      0      0
  AATK WILD-TYPE     11     17      8     14      2
D47V6, multiclass
        clus
vv       AATK MUTATED AATK WILD-TYPE
  CLUS_1            2             11
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            0             14
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AATK MUTATED        2      1      1
  AATK WILD-TYPE     25     12     15
D47V7, multiclass
        clus
vv       AATK MUTATED AATK WILD-TYPE
  CLUS_1            2             25
  CLUS_2            1             12
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AATK MUTATED        2      2      0      0      0      0
  AATK WILD-TYPE      7     15      7     12      6      5
D47V8, multiclass
        clus
vv       AATK MUTATED AATK WILD-TYPE
  CLUS_1            2              7
  CLUS_2            2             15
  CLUS_3            0              7
  CLUS_4            0             12
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = PANK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK2 MUTATED        3      1      0      1      0
  PANK2 WILD-TYPE     18     18      8      7      6
D48V1, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             1               7
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK2 MUTATED        2      0      0      1      0
  PANK2 WILD-TYPE     11      8     14     13      7
D48V2, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             0               8
  CLUS_3             0              14
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK2 MUTATED        3      0      0      0
  PANK2 WILD-TYPE     14      8     14     16
D48V3, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             3              14
  CLUS_2             0               8
  CLUS_3             0              14
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK2 MUTATED        2      0      1      0
  PANK2 WILD-TYPE     14     16      4     18
D48V4, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             0              16
  CLUS_3             1               4
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK2 MUTATED        2      1      0
  PANK2 WILD-TYPE     24     11     18
D48V5, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              11
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK2 MUTATED        1      0      0      2      0
  PANK2 WILD-TYPE     12     19      8     12      2
D48V6, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK2 MUTATED        2      1      0
  PANK2 WILD-TYPE     25     12     16
D48V7, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              12
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PANK2 MUTATED        1      0      0      2      0      0
  PANK2 WILD-TYPE      8     17      7     10      6      5
D48V8, multiclass
        clus
vv       PANK2 MUTATED PANK2 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             0              17
  CLUS_3             0               7
  CLUS_4             2              10
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = SNED1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNED1 MUTATED        4      1      0      0      1
  SNED1 WILD-TYPE     17     18      8      8      5
D49V1, multiclass
        clus
vv       SNED1 MUTATED SNED1 WILD-TYPE
  CLUS_1             4              17
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             0               8
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNED1 MUTATED        2      2      1      1      0
  SNED1 WILD-TYPE     11      6     13     13      7
D49V2, multiclass
        clus
vv       SNED1 MUTATED SNED1 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             2               6
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNED1 MUTATED        4      1      0      1
  SNED1 WILD-TYPE     13      7     14     15
D49V3, multiclass
        clus
vv       SNED1 MUTATED SNED1 WILD-TYPE
  CLUS_1             4              13
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNED1 MUTATED        3      1      1      1
  SNED1 WILD-TYPE     13     15      4     17
D49V4, multiclass
        clus
vv       SNED1 MUTATED SNED1 WILD-TYPE
  CLUS_1             3              13
  CLUS_2             1              15
  CLUS_3             1               4
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNED1 MUTATED        1      4      1
  SNED1 WILD-TYPE     25      8     17
D49V5, multiclass
        clus
vv       SNED1 MUTATED SNED1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4               8
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNED1 MUTATED        0      3      1      2      0
  SNED1 WILD-TYPE     13     16      7     12      2
D49V6, multiclass
        clus
vv       SNED1 MUTATED SNED1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             3              16
  CLUS_3             1               7
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SNED1 MUTATED        1      4      1
  SNED1 WILD-TYPE     26      9     15
D49V7, multiclass
        clus
vv       SNED1 MUTATED SNED1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             4               9
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNED1 MUTATED        0      2      0      1      2      1
  SNED1 WILD-TYPE      9     15      7     11      4      4
D49V8, multiclass
        clus
vv       SNED1 MUTATED SNED1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             2              15
  CLUS_3             0               7
  CLUS_4             1              11
  CLUS_5             2               4
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = CCDC150 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC150 MUTATED        2      0      1      1      0
  CCDC150 WILD-TYPE     19     19      7      7      6
D50V1, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               0                19
  CLUS_3               1                 7
  CLUS_4               1                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC150 MUTATED        2      0      1      1      0
  CCDC150 WILD-TYPE     11      8     13     13      7
D50V2, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               2                11
  CLUS_2               0                 8
  CLUS_3               1                13
  CLUS_4               1                13
  CLUS_5               0                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC150 MUTATED        3      0      1      0
  CCDC150 WILD-TYPE     14      8     13     16
D50V3, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               3                14
  CLUS_2               0                 8
  CLUS_3               1                13
  CLUS_4               0                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC150 MUTATED        2      1      1      0
  CCDC150 WILD-TYPE     14     15      4     18
D50V4, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               1                15
  CLUS_3               1                 4
  CLUS_4               0                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC150 MUTATED        3      1      0
  CCDC150 WILD-TYPE     23     11     18
D50V5, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               1                11
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC150 MUTATED        1      0      0      3      0
  CCDC150 WILD-TYPE     12     19      8     11      2
D50V6, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               0                19
  CLUS_3               0                 8
  CLUS_4               3                11
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC150 MUTATED        3      1      0
  CCDC150 WILD-TYPE     24     12     16
D50V7, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               3                24
  CLUS_2               1                12
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC150 MUTATED        1      0      0      3      0      0
  CCDC150 WILD-TYPE      8     17      7      9      6      5
D50V8, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               0                17
  CLUS_3               0                 7
  CLUS_4               3                 9
  CLUS_5               0                 6
  CLUS_6               0                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = ERCC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC2 MUTATED        3      3      2      2      0
  ERCC2 WILD-TYPE     18     16      6      6      6
D51V1, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             3              16
  CLUS_3             2               6
  CLUS_4             2               6
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC2 MUTATED        4      3      2      1      0
  ERCC2 WILD-TYPE      9      5     12     13      7
D51V2, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             4               9
  CLUS_2             3               5
  CLUS_3             2              12
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED        4      2      3      1
  ERCC2 WILD-TYPE     13      6     11     15
D51V3, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             4              13
  CLUS_2             2               6
  CLUS_3             3              11
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERCC2 MUTATED        5      4      0      1
  ERCC2 WILD-TYPE     11     12      5     17
D51V4, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             5              11
  CLUS_2             4              12
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC2 MUTATED        6      2      2
  ERCC2 WILD-TYPE     20     10     16
D51V5, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             6              20
  CLUS_2             2              10
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERCC2 MUTATED        3      2      0      5      0
  ERCC2 WILD-TYPE     10     17      8      9      2
D51V6, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             3              10
  CLUS_2             2              17
  CLUS_3             0               8
  CLUS_4             5               9
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERCC2 MUTATED        7      2      1
  ERCC2 WILD-TYPE     20     11     15
D51V7, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             7              20
  CLUS_2             2              11
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERCC2 MUTATED        3      2      0      5      0      0
  ERCC2 WILD-TYPE      6     15      7      7      6      5
D51V8, multiclass
        clus
vv       ERCC2 MUTATED ERCC2 WILD-TYPE
  CLUS_1             3               6
  CLUS_2             2              15
  CLUS_3             0               7
  CLUS_4             5               7
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = RREB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RREB1 MUTATED        3      1      1      0      0
  RREB1 WILD-TYPE     18     18      7      8      6
D52V1, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RREB1 MUTATED        2      0      1      1      0
  RREB1 WILD-TYPE     11      8     13     13      7
D52V2, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        1      1      1      0
  RREB1 WILD-TYPE     16      7     13     16
D52V3, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             1              13
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RREB1 MUTATED        1      1      0      1
  RREB1 WILD-TYPE     15     15      5     17
D52V4, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              15
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        1      1      2
  RREB1 WILD-TYPE     25     11     16
D52V5, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              11
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RREB1 MUTATED        2      2      0      0      0
  RREB1 WILD-TYPE     11     17      8     14      2
D52V6, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             2              17
  CLUS_3             0               8
  CLUS_4             0              14
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RREB1 MUTATED        1      1      2
  RREB1 WILD-TYPE     26     12     14
D52V7, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             1              12
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RREB1 MUTATED        1      2      0      0      0      1
  RREB1 WILD-TYPE      8     15      7     12      6      4
D52V8, multiclass
        clus
vv       RREB1 MUTATED RREB1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              15
  CLUS_3             0               7
  CLUS_4             0              12
  CLUS_5             0               6
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = RNF39 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF39 MUTATED        2      1      0      2      0
  RNF39 WILD-TYPE     19     18      8      6      6
D53V1, multiclass
        clus
vv       RNF39 MUTATED RNF39 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             2               6
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF39 MUTATED        1      2      2      0      0
  RNF39 WILD-TYPE     12      6     12     14      7
D53V2, multiclass
        clus
vv       RNF39 MUTATED RNF39 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             2               6
  CLUS_3             2              12
  CLUS_4             0              14
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF39 MUTATED        1      1      3      0
  RNF39 WILD-TYPE     16      7     11     16
D53V3, multiclass
        clus
vv       RNF39 MUTATED RNF39 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             3              11
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF39 MUTATED        2      3      0      0
  RNF39 WILD-TYPE     14     13      5     18
D53V4, multiclass
        clus
vv       RNF39 MUTATED RNF39 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             3              13
  CLUS_3             0               5
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF39 MUTATED        3      2      0
  RNF39 WILD-TYPE     23     10     18
D53V5, multiclass
        clus
vv       RNF39 MUTATED RNF39 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             2              10
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF39 MUTATED        2      1      0      2      0
  RNF39 WILD-TYPE     11     18      8     12      2
D53V6, multiclass
        clus
vv       RNF39 MUTATED RNF39 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF39 MUTATED        3      2      0
  RNF39 WILD-TYPE     24     11     16
D53V7, multiclass
        clus
vv       RNF39 MUTATED RNF39 WILD-TYPE
  CLUS_1             3              24
  CLUS_2             2              11
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF39 MUTATED        2      1      0      2      0      0
  RNF39 WILD-TYPE      7     16      7     10      6      5
D53V8, multiclass
        clus
vv       RNF39 MUTATED RNF39 WILD-TYPE
  CLUS_1             2               7
  CLUS_2             1              16
  CLUS_3             0               7
  CLUS_4             2              10
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = SEMA5B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEMA5B MUTATED        5      2      0      0      1
  SEMA5B WILD-TYPE     16     17      8      8      5
D54V1, multiclass
        clus
vv       SEMA5B MUTATED SEMA5B WILD-TYPE
  CLUS_1              5               16
  CLUS_2              2               17
  CLUS_3              0                8
  CLUS_4              0                8
  CLUS_5              1                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEMA5B MUTATED        2      1      0      3      0
  SEMA5B WILD-TYPE     11      7     14     11      7
D54V2, multiclass
        clus
vv       SEMA5B MUTATED SEMA5B WILD-TYPE
  CLUS_1              2               11
  CLUS_2              1                7
  CLUS_3              0               14
  CLUS_4              3               11
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEMA5B MUTATED        3      1      0      2
  SEMA5B WILD-TYPE     14      7     14     14
D54V3, multiclass
        clus
vv       SEMA5B MUTATED SEMA5B WILD-TYPE
  CLUS_1              3               14
  CLUS_2              1                7
  CLUS_3              0               14
  CLUS_4              2               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEMA5B MUTATED        3      0      1      2
  SEMA5B WILD-TYPE     13     16      4     16
D54V4, multiclass
        clus
vv       SEMA5B MUTATED SEMA5B WILD-TYPE
  CLUS_1              3               13
  CLUS_2              0               16
  CLUS_3              1                4
  CLUS_4              2               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEMA5B MUTATED        2      2      2
  SEMA5B WILD-TYPE     24     10     16
D54V5, multiclass
        clus
vv       SEMA5B MUTATED SEMA5B WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               10
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEMA5B MUTATED        0      4      0      2      0
  SEMA5B WILD-TYPE     13     15      8     12      2
D54V6, multiclass
        clus
vv       SEMA5B MUTATED SEMA5B WILD-TYPE
  CLUS_1              0               13
  CLUS_2              4               15
  CLUS_3              0                8
  CLUS_4              2               12
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEMA5B MUTATED        2      2      2
  SEMA5B WILD-TYPE     25     11     14
D54V7, multiclass
        clus
vv       SEMA5B MUTATED SEMA5B WILD-TYPE
  CLUS_1              2               25
  CLUS_2              2               11
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEMA5B MUTATED        0      3      0      2      1      0
  SEMA5B WILD-TYPE      9     14      7     10      5      5
D54V8, multiclass
        clus
vv       SEMA5B MUTATED SEMA5B WILD-TYPE
  CLUS_1              0                9
  CLUS_2              3               14
  CLUS_3              0                7
  CLUS_4              2               10
  CLUS_5              1                5
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = TAF5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF5 MUTATED        2      1      1      0      0
  TAF5 WILD-TYPE     19     18      7      8      6
D55V1, multiclass
        clus
vv       TAF5 MUTATED TAF5 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            1             18
  CLUS_3            1              7
  CLUS_4            0              8
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF5 MUTATED        1      1      1      0      1
  TAF5 WILD-TYPE     12      7     13     14      6
D55V2, multiclass
        clus
vv       TAF5 MUTATED TAF5 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            0             14
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF5 MUTATED        1      1      1      1
  TAF5 WILD-TYPE     16      7     13     15
D55V3, multiclass
        clus
vv       TAF5 MUTATED TAF5 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF5 MUTATED        2      1      0      1
  TAF5 WILD-TYPE     14     15      5     17
D55V4, multiclass
        clus
vv       TAF5 MUTATED TAF5 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            1             15
  CLUS_3            0              5
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF5 MUTATED        0      3      1
  TAF5 WILD-TYPE     26      9     17
D55V5, multiclass
        clus
vv       TAF5 MUTATED TAF5 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3              9
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF5 MUTATED        0      4      0      0      0
  TAF5 WILD-TYPE     13     15      8     14      2
D55V6, multiclass
        clus
vv       TAF5 MUTATED TAF5 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            4             15
  CLUS_3            0              8
  CLUS_4            0             14
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF5 MUTATED        0      3      1
  TAF5 WILD-TYPE     27     10     15
D55V7, multiclass
        clus
vv       TAF5 MUTATED TAF5 WILD-TYPE
  CLUS_1            0             27
  CLUS_2            3             10
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF5 MUTATED        0      4      0      0      0      0
  TAF5 WILD-TYPE      9     13      7     12      6      5
D55V8, multiclass
        clus
vv       TAF5 MUTATED TAF5 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            4             13
  CLUS_3            0              7
  CLUS_4            0             12
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = SARM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SARM1 MUTATED        4      0      0      3      0
  SARM1 WILD-TYPE     17     19      8      5      6
D56V1, multiclass
        clus
vv       SARM1 MUTATED SARM1 WILD-TYPE
  CLUS_1             4              17
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             3               5
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SARM1 MUTATED        0      1      3      2      0
  SARM1 WILD-TYPE     13      7     11     12      7
D56V2, multiclass
        clus
vv       SARM1 MUTATED SARM1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             1               7
  CLUS_3             3              11
  CLUS_4             2              12
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SARM1 MUTATED        2      1      3      0
  SARM1 WILD-TYPE     15      7     11     16
D56V3, multiclass
        clus
vv       SARM1 MUTATED SARM1 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             1               7
  CLUS_3             3              11
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SARM1 MUTATED        1      3      2      0
  SARM1 WILD-TYPE     15     13      3     18
D56V4, multiclass
        clus
vv       SARM1 MUTATED SARM1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              13
  CLUS_3             2               3
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARM1 MUTATED        1      3      2
  SARM1 WILD-TYPE     25      9     16
D56V5, multiclass
        clus
vv       SARM1 MUTATED SARM1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3               9
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SARM1 MUTATED        2      3      0      1      0
  SARM1 WILD-TYPE     11     16      8     13      2
D56V6, multiclass
        clus
vv       SARM1 MUTATED SARM1 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             3              16
  CLUS_3             0               8
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SARM1 MUTATED        1      4      1
  SARM1 WILD-TYPE     26      9     15
D56V7, multiclass
        clus
vv       SARM1 MUTATED SARM1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             4               9
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SARM1 MUTATED        1      2      0      1      1      1
  SARM1 WILD-TYPE      8     15      7     11      5      4
D56V8, multiclass
        clus
vv       SARM1 MUTATED SARM1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              15
  CLUS_3             0               7
  CLUS_4             1              11
  CLUS_5             1               5
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = PRSS27 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS27 MUTATED        1      1      1      0      0
  PRSS27 WILD-TYPE     20     18      7      8      6
D57V1, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1               18
  CLUS_3              1                7
  CLUS_4              0                8
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS27 MUTATED        0      1      1      1      0
  PRSS27 WILD-TYPE     13      7     13     13      7
D57V2, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              1                7
  CLUS_3              1               13
  CLUS_4              1               13
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS27 MUTATED        1      1      1      0
  PRSS27 WILD-TYPE     16      7     13     16
D57V3, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1                7
  CLUS_3              1               13
  CLUS_4              0               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS27 MUTATED        0      2      1      0
  PRSS27 WILD-TYPE     16     14      4     18
D57V4, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               14
  CLUS_3              1                4
  CLUS_4              0               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS27 MUTATED        1      2      0
  PRSS27 WILD-TYPE     25     10     18
D57V5, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               10
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS27 MUTATED        1      1      0      1      0
  PRSS27 WILD-TYPE     12     18      8     13      2
D57V6, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              1               18
  CLUS_3              0                8
  CLUS_4              1               13
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS27 MUTATED        1      2      0
  PRSS27 WILD-TYPE     26     11     16
D57V7, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              2               11
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRSS27 MUTATED        1      1      0      1      0      0
  PRSS27 WILD-TYPE      8     16      7     11      6      5
D57V8, multiclass
        clus
vv       PRSS27 MUTATED PRSS27 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              1               16
  CLUS_3              0                7
  CLUS_4              1               11
  CLUS_5              0                6
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = TMEM189 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM189 MUTATED        2      0      0      2      0
  TMEM189 WILD-TYPE     19     19      8      6      6
D58V1, multiclass
        clus
vv       TMEM189 MUTATED TMEM189 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               0                19
  CLUS_3               0                 8
  CLUS_4               2                 6
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM189 MUTATED        0      1      1      0      0
  TMEM189 WILD-TYPE     13      7     13     14      7
D58V2, multiclass
[1] "Remove cluster labels:" "TMEM189 MUTATED"       
clus
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JQ        TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LP        TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H8 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM189 MUTATED        0      1      1      0
  TMEM189 WILD-TYPE     17      7     13     16
D58V3, multiclass
[1] "Remove cluster labels:" "TMEM189 MUTATED"       
clus
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                2                53 
       TCGA-OR-A5J1        TCGA-OR-A5J3        TCGA-OR-A5J5        TCGA-OR-A5J6 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-PK-A5H8 
"TMEM189 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM189 MUTATED        1      1      0      0
  TMEM189 WILD-TYPE     15     15      5     18
D58V4, multiclass
[1] "Remove cluster labels:" "TMEM189 MUTATED"       
clus
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                2                53 
       TCGA-OR-A5J1        TCGA-OR-A5J3        TCGA-OR-A5J5        TCGA-OR-A5J6 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-PK-A5H8 
"TMEM189 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM189 MUTATED        0      2      0
  TMEM189 WILD-TYPE     26     10     18
D58V5, multiclass
[1] "Remove cluster labels:" "TMEM189 MUTATED"       
clus
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JQ        TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LP        TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H8 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM189 MUTATED        0      1      0      1      0
  TMEM189 WILD-TYPE     13     18      8     13      2
D58V6, multiclass
[1] "Remove cluster labels:" "TMEM189 MUTATED"       
clus
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JQ        TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LP        TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H8 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM189 MUTATED        0      2      0
  TMEM189 WILD-TYPE     27     11     16
D58V7, multiclass
[1] "Remove cluster labels:" "TMEM189 MUTATED"       
clus
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JQ        TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LP        TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H8 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM189 MUTATED        0      1      0      1      0      0
  TMEM189 WILD-TYPE      9     16      7     11      6      5
D58V8, multiclass
[1] "Remove cluster labels:" "TMEM189 MUTATED"       
clus
  TMEM189 MUTATED TMEM189 WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JQ        TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-OR-A5LP        TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H8 
"TMEM189 WILD-TYPE" "TMEM189 WILD-TYPE" 

Clustering(59) Variable = NOXA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOXA1 MUTATED        3      0      2      0      0
  NOXA1 WILD-TYPE     18     19      6      8      6
D59V1, multiclass
        clus
vv       NOXA1 MUTATED NOXA1 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             0              19
  CLUS_3             2               6
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOXA1 MUTATED        2      0      1      0      0
  NOXA1 WILD-TYPE     11      8     13     14      7
D59V2, multiclass
        clus
vv       NOXA1 MUTATED NOXA1 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             0              14
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOXA1 MUTATED        2      1      0      0
  NOXA1 WILD-TYPE     15      7     14     16
D59V3, multiclass
        clus
vv       NOXA1 MUTATED NOXA1 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOXA1 MUTATED        2      1      0      0
  NOXA1 WILD-TYPE     14     15      5     18
D59V4, multiclass
        clus
vv       NOXA1 MUTATED NOXA1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              15
  CLUS_3             0               5
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NOXA1 MUTATED        3      0      0
  NOXA1 WILD-TYPE     23     12     18
D59V5, multiclass
        clus
vv       NOXA1 MUTATED NOXA1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              12
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOXA1 MUTATED        1      0      0      2      0
  NOXA1 WILD-TYPE     12     19      8     12      2
D59V6, multiclass
        clus
vv       NOXA1 MUTATED NOXA1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NOXA1 MUTATED        3      0      0
  NOXA1 WILD-TYPE     24     13     16
D59V7, multiclass
        clus
vv       NOXA1 MUTATED NOXA1 WILD-TYPE
  CLUS_1             3              24
  CLUS_2             0              13
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOXA1 MUTATED        1      0      0      2      0      0
  NOXA1 WILD-TYPE      8     17      7     10      6      5
D59V8, multiclass
        clus
vv       NOXA1 MUTATED NOXA1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             0              17
  CLUS_3             0               7
  CLUS_4             2              10
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = LRP11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP11 MUTATED        0      2      1      3      0
  LRP11 WILD-TYPE     21     17      7      5      6
D60V1, multiclass
        clus
vv       LRP11 MUTATED LRP11 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             2              17
  CLUS_3             1               7
  CLUS_4             3               5
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP11 MUTATED        1      0      4      0      0
  LRP11 WILD-TYPE     12      8     10     14      7
D60V2, multiclass
        clus
vv       LRP11 MUTATED LRP11 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0               8
  CLUS_3             4              10
  CLUS_4             0              14
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP11 MUTATED        1      1      2      1
  LRP11 WILD-TYPE     16      7     12     15
D60V3, multiclass
        clus
vv       LRP11 MUTATED LRP11 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             2              12
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP11 MUTATED        1      3      0      1
  LRP11 WILD-TYPE     15     13      5     17
D60V4, multiclass
        clus
vv       LRP11 MUTATED LRP11 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             3              13
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP11 MUTATED        2      2      1
  LRP11 WILD-TYPE     24     10     17
D60V5, multiclass
        clus
vv       LRP11 MUTATED LRP11 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              10
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP11 MUTATED        1      2      0      2      0
  LRP11 WILD-TYPE     12     17      8     12      2
D60V6, multiclass
        clus
vv       LRP11 MUTATED LRP11 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             2              17
  CLUS_3             0               8
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP11 MUTATED        2      2      1
  LRP11 WILD-TYPE     25     11     15
D60V7, multiclass
        clus
vv       LRP11 MUTATED LRP11 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             2              11
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRP11 MUTATED        1      2      0      2      0      0
  LRP11 WILD-TYPE      8     15      7     10      6      5
D60V8, multiclass
        clus
vv       LRP11 MUTATED LRP11 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              15
  CLUS_3             0               7
  CLUS_4             2              10
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = RNF149 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF149 MUTATED        0      2      1      1      0
  RNF149 WILD-TYPE     21     17      7      7      6
D61V1, multiclass
        clus
vv       RNF149 MUTATED RNF149 WILD-TYPE
  CLUS_1              0               21
  CLUS_2              2               17
  CLUS_3              1                7
  CLUS_4              1                7
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF149 MUTATED        0      0      2      0      2
  RNF149 WILD-TYPE     13      8     12     14      5
D61V2, multiclass
        clus
vv       RNF149 MUTATED RNF149 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              0                8
  CLUS_3              2               12
  CLUS_4              0               14
  CLUS_5              2                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF149 MUTATED        0      1      2      1
  RNF149 WILD-TYPE     17      7     12     15
D61V3, multiclass
        clus
vv       RNF149 MUTATED RNF149 WILD-TYPE
  CLUS_1              0               17
  CLUS_2              1                7
  CLUS_3              2               12
  CLUS_4              1               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF149 MUTATED        0      2      0      2
  RNF149 WILD-TYPE     16     14      5     16
D61V4, multiclass
        clus
vv       RNF149 MUTATED RNF149 WILD-TYPE
  CLUS_1              0               16
  CLUS_2              2               14
  CLUS_3              0                5
  CLUS_4              2               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF149 MUTATED        1      2      1
  RNF149 WILD-TYPE     25     10     17
D61V5, multiclass
        clus
vv       RNF149 MUTATED RNF149 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               10
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF149 MUTATED        0      3      1      0      0
  RNF149 WILD-TYPE     13     16      7     14      2
D61V6, multiclass
        clus
vv       RNF149 MUTATED RNF149 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              3               16
  CLUS_3              1                7
  CLUS_4              0               14
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF149 MUTATED        1      2      1
  RNF149 WILD-TYPE     26     11     15
D61V7, multiclass
        clus
vv       RNF149 MUTATED RNF149 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              2               11
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF149 MUTATED        0      3      1      0      0      0
  RNF149 WILD-TYPE      9     14      6     12      6      5
D61V8, multiclass
        clus
vv       RNF149 MUTATED RNF149 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              3               14
  CLUS_3              1                6
  CLUS_4              0               12
  CLUS_5              0                6
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DMKN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMKN MUTATED        1      1      0      1      0
  DMKN WILD-TYPE     20     18      8      7      6
D62V1, multiclass
        clus
vv       DMKN MUTATED DMKN WILD-TYPE
  CLUS_1            1             20
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMKN MUTATED        0      1      2      0      0
  DMKN WILD-TYPE     13      7     12     14      7
D62V2, multiclass
        clus
vv       DMKN MUTATED DMKN WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1              7
  CLUS_3            2             12
  CLUS_4            0             14
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMKN MUTATED        1      1      1      0
  DMKN WILD-TYPE     16      7     13     16
D62V3, multiclass
        clus
vv       DMKN MUTATED DMKN WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMKN MUTATED        1      2      0      0
  DMKN WILD-TYPE     15     14      5     18
D62V4, multiclass
        clus
vv       DMKN MUTATED DMKN WILD-TYPE
  CLUS_1            1             15
  CLUS_2            2             14
  CLUS_3            0              5
  CLUS_4            0             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DMKN MUTATED        0      3      0
  DMKN WILD-TYPE     26      9     18
D62V5, multiclass
        clus
vv       DMKN MUTATED DMKN WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3              9
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMKN MUTATED        0      1      0      2      0
  DMKN WILD-TYPE     13     18      8     12      2
D62V6, multiclass
        clus
vv       DMKN MUTATED DMKN WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DMKN MUTATED        0      3      0
  DMKN WILD-TYPE     27     10     16
D62V7, multiclass
        clus
vv       DMKN MUTATED DMKN WILD-TYPE
  CLUS_1            0             27
  CLUS_2            3             10
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DMKN MUTATED        0      1      0      1      1      0
  DMKN WILD-TYPE      9     16      7     11      5      5
D62V8, multiclass
        clus
vv       DMKN MUTATED DMKN WILD-TYPE
  CLUS_1            0              9
  CLUS_2            1             16
  CLUS_3            0              7
  CLUS_4            1             11
  CLUS_5            1              5
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = FANK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANK1 MUTATED        2      1      1      0      0
  FANK1 WILD-TYPE     19     18      7      8      6
D63V1, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANK1 MUTATED        0      1      0      1      1
  FANK1 WILD-TYPE     13      7     14     13      6
D63V2, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             1              13
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANK1 MUTATED        1      1      0      1
  FANK1 WILD-TYPE     16      7     14     15
D63V3, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANK1 MUTATED        1      0      1      1
  FANK1 WILD-TYPE     15     16      4     17
D63V4, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             0              16
  CLUS_3             1               4
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        1      1      1
  FANK1 WILD-TYPE     25     11     17
D63V5, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              11
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANK1 MUTATED        0      0      1      2      0
  FANK1 WILD-TYPE     13     19      7     12      2
D63V6, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANK1 MUTATED        1      1      1
  FANK1 WILD-TYPE     26     12     15
D63V7, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             1              12
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FANK1 MUTATED        0      0      0      1      1      1
  FANK1 WILD-TYPE      9     17      7     11      5      4
D63V8, multiclass
        clus
vv       FANK1 MUTATED FANK1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             0              17
  CLUS_3             0               7
  CLUS_4             1              11
  CLUS_5             1               5
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = MUC5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC5B MUTATED        7      6      3      3      2
  MUC5B WILD-TYPE     14     13      5      5      4
D64V1, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             7              14
  CLUS_2             6              13
  CLUS_3             3               5
  CLUS_4             3               5
  CLUS_5             2               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC5B MUTATED        3      3      6      4      4
  MUC5B WILD-TYPE     10      5      8     10      3
D64V2, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             3              10
  CLUS_2             3               5
  CLUS_3             6               8
  CLUS_4             4              10
  CLUS_5             4               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC5B MUTATED        5      3      7      5
  MUC5B WILD-TYPE     12      5      7     11
D64V3, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             5              12
  CLUS_2             3               5
  CLUS_3             7               7
  CLUS_4             5              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC5B MUTATED        4      7      2      7
  MUC5B WILD-TYPE     12      9      3     11
D64V4, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             4              12
  CLUS_2             7               9
  CLUS_3             2               3
  CLUS_4             7              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC5B MUTATED        8      5      7
  MUC5B WILD-TYPE     18      7     11
D64V5, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             8              18
  CLUS_2             5               7
  CLUS_3             7              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC5B MUTATED        3      7      4      6      0
  MUC5B WILD-TYPE     10     12      4      8      2
D64V6, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             3              10
  CLUS_2             7              12
  CLUS_3             4               4
  CLUS_4             6               8
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MUC5B MUTATED        8      6      6
  MUC5B WILD-TYPE     19      7     10
D64V7, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             8              19
  CLUS_2             6               7
  CLUS_3             6              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUC5B MUTATED        3      6      2      6      1      2
  MUC5B WILD-TYPE      6     11      5      6      5      3
D64V8, multiclass
        clus
vv       MUC5B MUTATED MUC5B WILD-TYPE
  CLUS_1             3               6
  CLUS_2             6              11
  CLUS_3             2               5
  CLUS_4             6               6
  CLUS_5             1               5
  CLUS_6             2               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = PABPC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC1 MUTATED        1      1      2      0      0
  PABPC1 WILD-TYPE     20     18      6      8      6
D65V1, multiclass
        clus
vv       PABPC1 MUTATED PABPC1 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1               18
  CLUS_3              2                6
  CLUS_4              0                8
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC1 MUTATED        1      0      1      0      0
  PABPC1 WILD-TYPE     12      8     13     14      7
D65V2, multiclass
[1] "Remove cluster labels:" "PABPC1 MUTATED"        
clus
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LA       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC1 MUTATED        1      1      0      0
  PABPC1 WILD-TYPE     16      7     14     16
D65V3, multiclass
[1] "Remove cluster labels:" "PABPC1 MUTATED"        
clus
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               2               53 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J5 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PK-A5HB 
"PABPC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC1 MUTATED        1      1      0      0
  PABPC1 WILD-TYPE     15     15      5     18
D65V4, multiclass
[1] "Remove cluster labels:" "PABPC1 MUTATED"        
clus
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               2               53 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J5 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PK-A5HB 
"PABPC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        2      0      0
  PABPC1 WILD-TYPE     24     12     18
D65V5, multiclass
[1] "Remove cluster labels:" "PABPC1 MUTATED"        
clus
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LA       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC1 MUTATED        0      0      0      1      1
  PABPC1 WILD-TYPE     13     19      8     13      1
D65V6, multiclass
[1] "Remove cluster labels:" "PABPC1 MUTATED"        
clus
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LA       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC1 MUTATED        2      0      0
  PABPC1 WILD-TYPE     25     13     16
D65V7, multiclass
[1] "Remove cluster labels:" "PABPC1 MUTATED"        
clus
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LA       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PABPC1 MUTATED        0      0      0      1      1      0
  PABPC1 WILD-TYPE      9     17      7     11      5      5
D65V8, multiclass
[1] "Remove cluster labels:" "PABPC1 MUTATED"        
clus
  PABPC1 MUTATED PABPC1 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LA       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"PABPC1 WILD-TYPE" "PABPC1 WILD-TYPE" 

Clustering(66) Variable = GLTPD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTPD2 MUTATED        1      1      0      3      1
  GLTPD2 WILD-TYPE     20     18      8      5      5
D66V1, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1               18
  CLUS_3              0                8
  CLUS_4              3                5
  CLUS_5              1                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTPD2 MUTATED        1      0      2      2      1
  GLTPD2 WILD-TYPE     12      8     12     12      6
D66V2, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              0                8
  CLUS_3              2               12
  CLUS_4              2               12
  CLUS_5              1                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD2 MUTATED        2      0      2      2
  GLTPD2 WILD-TYPE     15      8     12     14
D66V3, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0                8
  CLUS_3              2               12
  CLUS_4              2               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD2 MUTATED        1      3      1      1
  GLTPD2 WILD-TYPE     15     13      4     17
D66V4, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               13
  CLUS_3              1                4
  CLUS_4              1               17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLTPD2 MUTATED        3      2      1
  GLTPD2 WILD-TYPE     23     10     17
D66V5, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              2               10
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTPD2 MUTATED        2      1      0      3      0
  GLTPD2 WILD-TYPE     11     18      8     11      2
D66V6, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              1               18
  CLUS_3              0                8
  CLUS_4              3               11
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLTPD2 MUTATED        3      2      1
  GLTPD2 WILD-TYPE     24     11     15
D66V7, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              3               24
  CLUS_2              2               11
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLTPD2 MUTATED        1      1      1      3      0      0
  GLTPD2 WILD-TYPE      8     16      6      9      6      5
D66V8, multiclass
        clus
vv       GLTPD2 MUTATED GLTPD2 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              1               16
  CLUS_3              1                6
  CLUS_4              3                9
  CLUS_5              0                6
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = MEN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEN1 MUTATED        0      1      1      2      0
  MEN1 WILD-TYPE     21     18      7      6      6
D67V1, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            1             18
  CLUS_3            1              7
  CLUS_4            2              6
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEN1 MUTATED        0      1      4      0      0
  MEN1 WILD-TYPE     13      7     10     14      7
D67V2, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1              7
  CLUS_3            4             10
  CLUS_4            0             14
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        0      1      4      0
  MEN1 WILD-TYPE     17      7     10     16
D67V3, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1              7
  CLUS_3            4             10
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        0      5      0      0
  MEN1 WILD-TYPE     16     11      5     18
D67V4, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            5             11
  CLUS_3            0              5
  CLUS_4            0             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEN1 MUTATED        4      1      0
  MEN1 WILD-TYPE     22     11     18
D67V5, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            4             22
  CLUS_2            1             11
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEN1 MUTATED        4      0      0      1      0
  MEN1 WILD-TYPE      9     19      8     13      2
D67V6, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            4              9
  CLUS_2            0             19
  CLUS_3            0              8
  CLUS_4            1             13
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEN1 MUTATED        4      1      0
  MEN1 WILD-TYPE     23     12     16
D67V7, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            4             23
  CLUS_2            1             12
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MEN1 MUTATED        4      0      0      1      0      0
  MEN1 WILD-TYPE      5     17      7     11      6      5
D67V8, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            4              5
  CLUS_2            0             17
  CLUS_3            0              7
  CLUS_4            1             11
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = SRPX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        1      2      0      0      0
  SRPX WILD-TYPE     20     17      8      8      6
D68V1, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             20
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            0              8
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        0      2      0      1      0
  SRPX WILD-TYPE     13      6     14     13      7
D68V2, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0             13
  CLUS_2            2              6
  CLUS_3            0             14
  CLUS_4            1             13
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        0      1      1      1
  SRPX WILD-TYPE     17      7     13     15
D68V3, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        1      1      0      1
  SRPX WILD-TYPE     15     15      5     17
D68V4, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             15
  CLUS_3            0              5
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        1      1      1
  SRPX WILD-TYPE     25     11     17
D68V5, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             11
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        1      2      0      0      0
  SRPX WILD-TYPE     12     17      8     14      2
D68V6, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             12
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            0             14
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        1      1      1
  SRPX WILD-TYPE     26     12     15
D68V7, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1             26
  CLUS_2            1             12
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRPX MUTATED        1      2      0      0      0      0
  SRPX WILD-TYPE      8     15      7     12      6      5
D68V8, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1              8
  CLUS_2            2             15
  CLUS_3            0              7
  CLUS_4            0             12
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = MAP1S MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1S MUTATED        0      2      1      1      1
  MAP1S WILD-TYPE     21     17      7      7      5
D69V1, multiclass
        clus
vv       MAP1S MUTATED MAP1S WILD-TYPE
  CLUS_1             0              21
  CLUS_2             2              17
  CLUS_3             1               7
  CLUS_4             1               7
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1S MUTATED        1      1      0      3      0
  MAP1S WILD-TYPE     12      7     14     11      7
D69V2, multiclass
        clus
vv       MAP1S MUTATED MAP1S WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             3              11
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP1S MUTATED        1      1      0      3
  MAP1S WILD-TYPE     16      7     14     13
D69V3, multiclass
        clus
vv       MAP1S MUTATED MAP1S WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             3              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP1S MUTATED        2      1      0      2
  MAP1S WILD-TYPE     14     15      5     16
D69V4, multiclass
        clus
vv       MAP1S MUTATED MAP1S WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              15
  CLUS_3             0               5
  CLUS_4             2              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAP1S MUTATED        2      1      2
  MAP1S WILD-TYPE     24     11     16
D69V5, multiclass
        clus
vv       MAP1S MUTATED MAP1S WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              11
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1S MUTATED        2      2      0      1      0
  MAP1S WILD-TYPE     11     17      8     13      2
D69V6, multiclass
        clus
vv       MAP1S MUTATED MAP1S WILD-TYPE
  CLUS_1             2              11
  CLUS_2             2              17
  CLUS_3             0               8
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAP1S MUTATED        2      1      2
  MAP1S WILD-TYPE     25     12     14
D69V7, multiclass
        clus
vv       MAP1S MUTATED MAP1S WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              12
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP1S MUTATED        1      2      1      1      0      0
  MAP1S WILD-TYPE      8     15      6     11      6      5
D69V8, multiclass
        clus
vv       MAP1S MUTATED MAP1S WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              15
  CLUS_3             1               6
  CLUS_4             1              11
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = SCRT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCRT1 MUTATED        1      1      0      1      0
  SCRT1 WILD-TYPE     20     18      8      7      6
D70V1, multiclass
        clus
vv       SCRT1 MUTATED SCRT1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             1               7
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCRT1 MUTATED        2      0      0      1      0
  SCRT1 WILD-TYPE     11      8     14     13      7
D70V2, multiclass
        clus
vv       SCRT1 MUTATED SCRT1 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             0               8
  CLUS_3             0              14
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCRT1 MUTATED        2      0      1      0
  SCRT1 WILD-TYPE     15      8     13     16
D70V3, multiclass
        clus
vv       SCRT1 MUTATED SCRT1 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCRT1 MUTATED        2      0      0      1
  SCRT1 WILD-TYPE     14     16      5     17
D70V4, multiclass
        clus
vv       SCRT1 MUTATED SCRT1 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             0              16
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCRT1 MUTATED        2      1      0
  SCRT1 WILD-TYPE     24     11     18
D70V5, multiclass
        clus
vv       SCRT1 MUTATED SCRT1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              11
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCRT1 MUTATED        0      1      1      1      0
  SCRT1 WILD-TYPE     13     18      7     13      2
D70V6, multiclass
        clus
vv       SCRT1 MUTATED SCRT1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCRT1 MUTATED        2      1      0
  SCRT1 WILD-TYPE     25     12     16
D70V7, multiclass
        clus
vv       SCRT1 MUTATED SCRT1 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              12
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCRT1 MUTATED        0      1      1      1      0      0
  SCRT1 WILD-TYPE      9     16      6     11      6      5
D70V8, multiclass
        clus
vv       SCRT1 MUTATED SCRT1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             1              16
  CLUS_3             1               6
  CLUS_4             1              11
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = OBSCN MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OBSCN MUTATED        9      6      1      2      2
  OBSCN WILD-TYPE     12     13      7      6      4
D71V1, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             9              12
  CLUS_2             6              13
  CLUS_3             1               7
  CLUS_4             2               6
  CLUS_5             2               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OBSCN MUTATED        4      5      2      5      2
  OBSCN WILD-TYPE      9      3     12      9      5
D71V2, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             4               9
  CLUS_2             5               3
  CLUS_3             2              12
  CLUS_4             5               9
  CLUS_5             2               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OBSCN MUTATED        7      2      6      3
  OBSCN WILD-TYPE     10      6      8     13
D71V3, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             7              10
  CLUS_2             2               6
  CLUS_3             6               8
  CLUS_4             3              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OBSCN MUTATED        5      5      3      5
  OBSCN WILD-TYPE     11     11      2     13
D71V4, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             5              11
  CLUS_2             5              11
  CLUS_3             3               2
  CLUS_4             5              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OBSCN MUTATED        7      7      4
  OBSCN WILD-TYPE     19      5     14
D71V5, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             7              19
  CLUS_2             7               5
  CLUS_3             4              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OBSCN MUTATED        3      6      3      6      0
  OBSCN WILD-TYPE     10     13      5      8      2
D71V6, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             3              10
  CLUS_2             6              13
  CLUS_3             3               5
  CLUS_4             6               8
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OBSCN MUTATED        7      7      4
  OBSCN WILD-TYPE     20      6     12
D71V7, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             7              20
  CLUS_2             7               6
  CLUS_3             4              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OBSCN MUTATED        2      4      2      6      2      2
  OBSCN WILD-TYPE      7     13      5      6      4      3
D71V8, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             2               7
  CLUS_2             4              13
  CLUS_3             2               5
  CLUS_4             6               6
  CLUS_5             2               4
  CLUS_6             2               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = IER5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IER5 MUTATED        3      0      0      0      0
  IER5 WILD-TYPE     18     19      8      8      6
D72V1, multiclass
        clus
vv       IER5 MUTATED IER5 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            0             19
  CLUS_3            0              8
  CLUS_4            0              8
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IER5 MUTATED        2      0      0      0      0
  IER5 WILD-TYPE     11      8     14     14      7
D72V2, multiclass
[1] "Remove cluster labels:" "IER5 MUTATED"          
clus
  IER5 MUTATED IER5 WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5K4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5K5     TCGA-OR-A5K8     TCGA-OR-A5K9     TCGA-OR-A5KO 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KX     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IER5 MUTATED        2      0      0      0
  IER5 WILD-TYPE     15      8     14     16
D72V3, multiclass
[1] "Remove cluster labels:" "IER5 MUTATED"          
clus
  IER5 MUTATED IER5 WILD-TYPE 
             2             53 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J5 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8     TCGA-OR-A5JA 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD     TCGA-OR-A5JF 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL     TCGA-OR-A5JP 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT     TCGA-OR-A5JV 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5K4     TCGA-OR-A5K5 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5K8     TCGA-OR-A5K9     TCGA-OR-A5KO     TCGA-OR-A5KT 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW     TCGA-OR-A5KX 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP     TCGA-OR-A5LR 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG     TCGA-PK-A5H8 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-PK-A5HB 
"IER5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IER5 MUTATED        2      0      0      0
  IER5 WILD-TYPE     14     16      5     18
D72V4, multiclass
[1] "Remove cluster labels:" "IER5 MUTATED"          
clus
  IER5 MUTATED IER5 WILD-TYPE 
             2             53 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J5 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8     TCGA-OR-A5JA 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD     TCGA-OR-A5JF 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL     TCGA-OR-A5JP 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT     TCGA-OR-A5JV 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5K4     TCGA-OR-A5K5 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5K8     TCGA-OR-A5K9     TCGA-OR-A5KO     TCGA-OR-A5KT 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW     TCGA-OR-A5KX 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP     TCGA-OR-A5LR 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG     TCGA-PK-A5H8 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-PK-A5HB 
"IER5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IER5 MUTATED        1      1      0
  IER5 WILD-TYPE     25     11     18
D72V5, multiclass
[1] "Remove cluster labels:" "IER5 MUTATED"          
clus
  IER5 MUTATED IER5 WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5K4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5K5     TCGA-OR-A5K8     TCGA-OR-A5K9     TCGA-OR-A5KO 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KX     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IER5 MUTATED        0      1      0      1      0
  IER5 WILD-TYPE     13     18      8     13      2
D72V6, multiclass
[1] "Remove cluster labels:" "IER5 MUTATED"          
clus
  IER5 MUTATED IER5 WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5K4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5K5     TCGA-OR-A5K8     TCGA-OR-A5K9     TCGA-OR-A5KO 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KX     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IER5 MUTATED        1      1      0
  IER5 WILD-TYPE     26     12     16
D72V7, multiclass
[1] "Remove cluster labels:" "IER5 MUTATED"          
clus
  IER5 MUTATED IER5 WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5K4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5K5     TCGA-OR-A5K8     TCGA-OR-A5K9     TCGA-OR-A5KO 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KX     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IER5 MUTATED        0      1      0      1      0      0
  IER5 WILD-TYPE      9     16      7     11      6      5
D72V8, multiclass
[1] "Remove cluster labels:" "IER5 MUTATED"          
clus
  IER5 MUTATED IER5 WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5K4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5K5     TCGA-OR-A5K8     TCGA-OR-A5K9     TCGA-OR-A5KO 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5KX     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" "IER5 WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"IER5 WILD-TYPE" "IER5 WILD-TYPE" 

Clustering(73) Variable = TNIP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNIP2 MUTATED        2      1      0      1      1
  TNIP2 WILD-TYPE     19     18      8      7      5
D73V1, multiclass
        clus
vv       TNIP2 MUTATED TNIP2 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             1               7
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNIP2 MUTATED        1      1      2      0      0
  TNIP2 WILD-TYPE     12      7     12     14      7
D73V2, multiclass
        clus
vv       TNIP2 MUTATED TNIP2 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1               7
  CLUS_3             2              12
  CLUS_4             0              14
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNIP2 MUTATED        1      0      2      1
  TNIP2 WILD-TYPE     16      8     12     15
D73V3, multiclass
        clus
vv       TNIP2 MUTATED TNIP2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNIP2 MUTATED        1      2      0      1
  TNIP2 WILD-TYPE     15     14      5     17
D73V4, multiclass
        clus
vv       TNIP2 MUTATED TNIP2 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              14
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNIP2 MUTATED        2      1      1
  TNIP2 WILD-TYPE     24     11     17
D73V5, multiclass
        clus
vv       TNIP2 MUTATED TNIP2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              11
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNIP2 MUTATED        1      0      1      2      0
  TNIP2 WILD-TYPE     12     19      7     12      2
D73V6, multiclass
        clus
vv       TNIP2 MUTATED TNIP2 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNIP2 MUTATED        2      1      1
  TNIP2 WILD-TYPE     25     12     15
D73V7, multiclass
        clus
vv       TNIP2 MUTATED TNIP2 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              12
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNIP2 MUTATED        1      0      0      2      0      1
  TNIP2 WILD-TYPE      8     17      7     10      6      4
D73V8, multiclass
        clus
vv       TNIP2 MUTATED TNIP2 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             0              17
  CLUS_3             0               7
  CLUS_4             2              10
  CLUS_5             0               6
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = NOTCH2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH2 MUTATED        4      1      0      2      0
  NOTCH2 WILD-TYPE     17     18      8      6      6
D74V1, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              4               17
  CLUS_2              1               18
  CLUS_3              0                8
  CLUS_4              2                6
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH2 MUTATED        1      0      2      2      0
  NOTCH2 WILD-TYPE     12      8     12     12      7
D74V2, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              0                8
  CLUS_3              2               12
  CLUS_4              2               12
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2 MUTATED        3      1      1      0
  NOTCH2 WILD-TYPE     14      7     13     16
D74V3, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              3               14
  CLUS_2              1                7
  CLUS_3              1               13
  CLUS_4              0               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOTCH2 MUTATED        1      2      2      0
  NOTCH2 WILD-TYPE     15     14      3     18
D74V4, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              2               14
  CLUS_3              2                3
  CLUS_4              0               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        1      4      0
  NOTCH2 WILD-TYPE     25      8     18
D74V5, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4                8
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOTCH2 MUTATED        0      2      0      3      0
  NOTCH2 WILD-TYPE     13     17      8     11      2
D74V6, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              2               17
  CLUS_3              0                8
  CLUS_4              3               11
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NOTCH2 MUTATED        1      4      0
  NOTCH2 WILD-TYPE     26      9     16
D74V7, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              1               26
  CLUS_2              4                9
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOTCH2 MUTATED        0      1      0      3      1      0
  NOTCH2 WILD-TYPE      9     16      7      9      5      5
D74V8, multiclass
        clus
vv       NOTCH2 MUTATED NOTCH2 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              1               16
  CLUS_3              0                7
  CLUS_4              3                9
  CLUS_5              1                5
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = RASIP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASIP1 MUTATED        3      2      2      0      0
  RASIP1 WILD-TYPE     18     17      6      8      6
D75V1, multiclass
        clus
vv       RASIP1 MUTATED RASIP1 WILD-TYPE
  CLUS_1              3               18
  CLUS_2              2               17
  CLUS_3              2                6
  CLUS_4              0                8
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASIP1 MUTATED        2      2      2      1      0
  RASIP1 WILD-TYPE     11      6     12     13      7
D75V2, multiclass
        clus
vv       RASIP1 MUTATED RASIP1 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              2                6
  CLUS_3              2               12
  CLUS_4              1               13
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASIP1 MUTATED        3      3      1      0
  RASIP1 WILD-TYPE     14      5     13     16
D75V3, multiclass
        clus
vv       RASIP1 MUTATED RASIP1 WILD-TYPE
  CLUS_1              3               14
  CLUS_2              3                5
  CLUS_3              1               13
  CLUS_4              0               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASIP1 MUTATED        3      3      1      0
  RASIP1 WILD-TYPE     13     13      4     18
D75V4, multiclass
        clus
vv       RASIP1 MUTATED RASIP1 WILD-TYPE
  CLUS_1              3               13
  CLUS_2              3               13
  CLUS_3              1                4
  CLUS_4              0               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASIP1 MUTATED        3      4      0
  RASIP1 WILD-TYPE     23      8     18
D75V5, multiclass
        clus
vv       RASIP1 MUTATED RASIP1 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              4                8
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASIP1 MUTATED        1      3      0      3      0
  RASIP1 WILD-TYPE     12     16      8     11      2
D75V6, multiclass
        clus
vv       RASIP1 MUTATED RASIP1 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              3               16
  CLUS_3              0                8
  CLUS_4              3               11
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASIP1 MUTATED        3      4      0
  RASIP1 WILD-TYPE     24      9     16
D75V7, multiclass
        clus
vv       RASIP1 MUTATED RASIP1 WILD-TYPE
  CLUS_1              3               24
  CLUS_2              4                9
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RASIP1 MUTATED        1      2      0      3      1      0
  RASIP1 WILD-TYPE      8     15      7      9      5      5
D75V8, multiclass
        clus
vv       RASIP1 MUTATED RASIP1 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              2               15
  CLUS_3              0                7
  CLUS_4              3                9
  CLUS_5              1                5
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = NMU MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NMU MUTATED        1      2      1      0      0
  NMU WILD-TYPE     20     17      7      8      6
D76V1, multiclass
        clus
vv       NMU MUTATED NMU WILD-TYPE
  CLUS_1           1            20
  CLUS_2           2            17
  CLUS_3           1             7
  CLUS_4           0             8
  CLUS_5           0             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NMU MUTATED        1      1      1      1      0
  NMU WILD-TYPE     12      7     13     13      7
D76V2, multiclass
        clus
vv       NMU MUTATED NMU WILD-TYPE
  CLUS_1           1            12
  CLUS_2           1             7
  CLUS_3           1            13
  CLUS_4           1            13
  CLUS_5           0             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NMU MUTATED        0      2      0      1
  NMU WILD-TYPE     17      6     14     15
D76V3, multiclass
        clus
vv       NMU MUTATED NMU WILD-TYPE
  CLUS_1           0            17
  CLUS_2           2             6
  CLUS_3           0            14
  CLUS_4           1            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NMU MUTATED        0      2      0      1
  NMU WILD-TYPE     16     14      5     17
D76V4, multiclass
        clus
vv       NMU MUTATED NMU WILD-TYPE
  CLUS_1           0            16
  CLUS_2           2            14
  CLUS_3           0             5
  CLUS_4           1            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NMU MUTATED        2      1      1
  NMU WILD-TYPE     24     11     17
D76V5, multiclass
        clus
vv       NMU MUTATED NMU WILD-TYPE
  CLUS_1           2            24
  CLUS_2           1            11
  CLUS_3           1            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NMU MUTATED        2      2      0      0      0
  NMU WILD-TYPE     11     17      8     14      2
D76V6, multiclass
        clus
vv       NMU MUTATED NMU WILD-TYPE
  CLUS_1           2            11
  CLUS_2           2            17
  CLUS_3           0             8
  CLUS_4           0            14
  CLUS_5           0             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NMU MUTATED        2      1      1
  NMU WILD-TYPE     25     12     15
D76V7, multiclass
        clus
vv       NMU MUTATED NMU WILD-TYPE
  CLUS_1           2            25
  CLUS_2           1            12
  CLUS_3           1            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NMU MUTATED        2      2      0      0      0      0
  NMU WILD-TYPE      7     15      7     12      6      5
D76V8, multiclass
        clus
vv       NMU MUTATED NMU WILD-TYPE
  CLUS_1           2             7
  CLUS_2           2            15
  CLUS_3           0             7
  CLUS_4           0            12
  CLUS_5           0             6
  CLUS_6           0             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = VARS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VARS MUTATED        1      2      1      2      0
  VARS WILD-TYPE     20     17      7      6      6
D77V1, multiclass
        clus
vv       VARS MUTATED VARS WILD-TYPE
  CLUS_1            1             20
  CLUS_2            2             17
  CLUS_3            1              7
  CLUS_4            2              6
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VARS MUTATED        0      1      3      2      0
  VARS WILD-TYPE     13      7     11     12      7
D77V2, multiclass
        clus
vv       VARS MUTATED VARS WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1              7
  CLUS_3            3             11
  CLUS_4            2             12
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VARS MUTATED        1      0      4      1
  VARS WILD-TYPE     16      8     10     15
D77V3, multiclass
        clus
vv       VARS MUTATED VARS WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0              8
  CLUS_3            4             10
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VARS MUTATED        0      4      1      1
  VARS WILD-TYPE     16     12      4     17
D77V4, multiclass
        clus
vv       VARS MUTATED VARS WILD-TYPE
  CLUS_1            0             16
  CLUS_2            4             12
  CLUS_3            1              4
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VARS MUTATED        2      2      2
  VARS WILD-TYPE     24     10     16
D77V5, multiclass
        clus
vv       VARS MUTATED VARS WILD-TYPE
  CLUS_1            2             24
  CLUS_2            2             10
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VARS MUTATED        2      2      0      2      0
  VARS WILD-TYPE     11     17      8     12      2
D77V6, multiclass
        clus
vv       VARS MUTATED VARS WILD-TYPE
  CLUS_1            2             11
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VARS MUTATED        2      3      1
  VARS WILD-TYPE     25     10     15
D77V7, multiclass
        clus
vv       VARS MUTATED VARS WILD-TYPE
  CLUS_1            2             25
  CLUS_2            3             10
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VARS MUTATED        2      2      0      2      0      0
  VARS WILD-TYPE      7     15      7     10      6      5
D77V8, multiclass
        clus
vv       VARS MUTATED VARS WILD-TYPE
  CLUS_1            2              7
  CLUS_2            2             15
  CLUS_3            0              7
  CLUS_4            2             10
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = SHOX2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHOX2 MUTATED        2      0      0      0      1
  SHOX2 WILD-TYPE     19     19      8      8      5
D78V1, multiclass
        clus
vv       SHOX2 MUTATED SHOX2 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             0               8
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHOX2 MUTATED        1      0      0      1      0
  SHOX2 WILD-TYPE     12      8     14     13      7
D78V2, multiclass
[1] "Remove cluster labels:" "SHOX2 MUTATED"         
clus
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHOX2 MUTATED        1      0      0      1
  SHOX2 WILD-TYPE     16      8     14     15
D78V3, multiclass
[1] "Remove cluster labels:" "SHOX2 MUTATED"         
clus
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KW 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-PK-A5HB 
"SHOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHOX2 MUTATED        1      0      0      1
  SHOX2 WILD-TYPE     15     16      5     17
D78V4, multiclass
[1] "Remove cluster labels:" "SHOX2 MUTATED"         
clus
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KW 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-PK-A5HB 
"SHOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SHOX2 MUTATED        1      0      1
  SHOX2 WILD-TYPE     25     12     17
D78V5, multiclass
[1] "Remove cluster labels:" "SHOX2 MUTATED"         
clus
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHOX2 MUTATED        0      1      0      1      0
  SHOX2 WILD-TYPE     13     18      8     13      2
D78V6, multiclass
[1] "Remove cluster labels:" "SHOX2 MUTATED"         
clus
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SHOX2 MUTATED        1      0      1
  SHOX2 WILD-TYPE     26     13     15
D78V7, multiclass
[1] "Remove cluster labels:" "SHOX2 MUTATED"         
clus
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SHOX2 MUTATED        0      1      0      1      0      0
  SHOX2 WILD-TYPE      9     16      7     11      6      5
D78V8, multiclass
[1] "Remove cluster labels:" "SHOX2 MUTATED"         
clus
  SHOX2 MUTATED SHOX2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"SHOX2 WILD-TYPE" "SHOX2 WILD-TYPE" 

Clustering(79) Variable = HSD17B1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSD17B1 MUTATED        2      2      0      0      0
  HSD17B1 WILD-TYPE     19     17      8      8      6
D79V1, multiclass
        clus
vv       HSD17B1 MUTATED HSD17B1 WILD-TYPE
  CLUS_1               2                19
  CLUS_2               2                17
  CLUS_3               0                 8
  CLUS_4               0                 8
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSD17B1 MUTATED        0      0      0      3      1
  HSD17B1 WILD-TYPE     13      8     14     11      6
D79V2, multiclass
        clus
vv       HSD17B1 MUTATED HSD17B1 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               0                 8
  CLUS_3               0                14
  CLUS_4               3                11
  CLUS_5               1                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B1 MUTATED        2      0      1      1
  HSD17B1 WILD-TYPE     15      8     13     15
D79V3, multiclass
        clus
vv       HSD17B1 MUTATED HSD17B1 WILD-TYPE
  CLUS_1               2                15
  CLUS_2               0                 8
  CLUS_3               1                13
  CLUS_4               1                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSD17B1 MUTATED        0      0      2      2
  HSD17B1 WILD-TYPE     16     16      3     16
D79V4, multiclass
        clus
vv       HSD17B1 MUTATED HSD17B1 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               0                16
  CLUS_3               2                 3
  CLUS_4               2                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSD17B1 MUTATED        2      1      1
  HSD17B1 WILD-TYPE     24     11     17
D79V5, multiclass
        clus
vv       HSD17B1 MUTATED HSD17B1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                11
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSD17B1 MUTATED        1      1      0      2      0
  HSD17B1 WILD-TYPE     12     18      8     12      2
D79V6, multiclass
        clus
vv       HSD17B1 MUTATED HSD17B1 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               1                18
  CLUS_3               0                 8
  CLUS_4               2                12
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSD17B1 MUTATED        2      1      1
  HSD17B1 WILD-TYPE     25     12     15
D79V7, multiclass
        clus
vv       HSD17B1 MUTATED HSD17B1 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               1                12
  CLUS_3               1                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSD17B1 MUTATED        0      1      1      1      1      0
  HSD17B1 WILD-TYPE      9     16      6     11      5      5
D79V8, multiclass
        clus
vv       HSD17B1 MUTATED HSD17B1 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               1                16
  CLUS_3               1                 6
  CLUS_4               1                11
  CLUS_5               1                 5
  CLUS_6               0                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = COQ2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COQ2 MUTATED        1      1      0      2      1
  COQ2 WILD-TYPE     20     18      8      6      5
D80V1, multiclass
        clus
vv       COQ2 MUTATED COQ2 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            2              6
  CLUS_5            1              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COQ2 MUTATED        0      1      1      1      1
  COQ2 WILD-TYPE     13      7     13     13      6
D80V2, multiclass
        clus
vv       COQ2 MUTATED COQ2 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            1             13
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COQ2 MUTATED        0      1      2      1
  COQ2 WILD-TYPE     17      7     12     15
D80V3, multiclass
        clus
vv       COQ2 MUTATED COQ2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1              7
  CLUS_3            2             12
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COQ2 MUTATED        0      2      0      2
  COQ2 WILD-TYPE     16     14      5     16
D80V4, multiclass
        clus
vv       COQ2 MUTATED COQ2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             14
  CLUS_3            0              5
  CLUS_4            2             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COQ2 MUTATED        2      1      1
  COQ2 WILD-TYPE     24     11     17
D80V5, multiclass
        clus
vv       COQ2 MUTATED COQ2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             11
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COQ2 MUTATED        1      2      1      0      0
  COQ2 WILD-TYPE     12     17      7     14      2
D80V6, multiclass
        clus
vv       COQ2 MUTATED COQ2 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            2             17
  CLUS_3            1              7
  CLUS_4            0             14
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COQ2 MUTATED        2      1      1
  COQ2 WILD-TYPE     25     12     15
D80V7, multiclass
        clus
vv       COQ2 MUTATED COQ2 WILD-TYPE
  CLUS_1            2             25
  CLUS_2            1             12
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COQ2 MUTATED        1      2      1      0      0      0
  COQ2 WILD-TYPE      8     15      6     12      6      5
D80V8, multiclass
        clus
vv       COQ2 MUTATED COQ2 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            2             15
  CLUS_3            1              6
  CLUS_4            0             12
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = KNDC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KNDC1 MUTATED        2      4      2      1      1
  KNDC1 WILD-TYPE     19     15      6      7      5
D81V1, multiclass
        clus
vv       KNDC1 MUTATED KNDC1 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             4              15
  CLUS_3             2               6
  CLUS_4             1               7
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KNDC1 MUTATED        0      2      2      2      3
  KNDC1 WILD-TYPE     13      6     12     12      4
D81V2, multiclass
        clus
vv       KNDC1 MUTATED KNDC1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             2               6
  CLUS_3             2              12
  CLUS_4             2              12
  CLUS_5             3               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNDC1 MUTATED        1      3      1      4
  KNDC1 WILD-TYPE     16      5     13     12
D81V3, multiclass
        clus
vv       KNDC1 MUTATED KNDC1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             3               5
  CLUS_3             1              13
  CLUS_4             4              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNDC1 MUTATED        1      2      1      5
  KNDC1 WILD-TYPE     15     14      4     13
D81V4, multiclass
        clus
vv       KNDC1 MUTATED KNDC1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              14
  CLUS_3             1               4
  CLUS_4             5              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KNDC1 MUTATED        2      3      4
  KNDC1 WILD-TYPE     24      9     14
D81V5, multiclass
        clus
vv       KNDC1 MUTATED KNDC1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3               9
  CLUS_3             4              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KNDC1 MUTATED        1      4      3      1      0
  KNDC1 WILD-TYPE     12     15      5     13      2
D81V6, multiclass
        clus
vv       KNDC1 MUTATED KNDC1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             4              15
  CLUS_3             3               5
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KNDC1 MUTATED        2      3      4
  KNDC1 WILD-TYPE     25     10     12
D81V7, multiclass
        clus
vv       KNDC1 MUTATED KNDC1 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             3              10
  CLUS_3             4              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KNDC1 MUTATED        1      3      1      1      1      2
  KNDC1 WILD-TYPE      8     14      6     11      5      3
D81V8, multiclass
        clus
vv       KNDC1 MUTATED KNDC1 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             3              14
  CLUS_3             1               6
  CLUS_4             1              11
  CLUS_5             1               5
  CLUS_6             2               3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = AR MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        2      0      0      1      1
  AR WILD-TYPE     19     19      8      7      5
D82V1, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           19
  CLUS_2          0           19
  CLUS_3          0            8
  CLUS_4          1            7
  CLUS_5          1            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        2      0      1      0      0
  AR WILD-TYPE     11      8     13     14      7
D82V2, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           11
  CLUS_2          0            8
  CLUS_3          1           13
  CLUS_4          0           14
  CLUS_5          0            7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        2      0      1      0
  AR WILD-TYPE     15      8     13     16
D82V3, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           15
  CLUS_2          0            8
  CLUS_3          1           13
  CLUS_4          0           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AR MUTATED        2      1      0      0
  AR WILD-TYPE     14     15      5     18
D82V4, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           14
  CLUS_2          1           15
  CLUS_3          0            5
  CLUS_4          0           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  AR MUTATED        2      1      0
  AR WILD-TYPE     24     11     18
D82V5, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           24
  CLUS_2          1           11
  CLUS_3          0           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AR MUTATED        1      1      0      1      0
  AR WILD-TYPE     12     18      8     13      2
D82V6, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          1           12
  CLUS_2          1           18
  CLUS_3          0            8
  CLUS_4          1           13
  CLUS_5          0            2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  AR MUTATED        2      1      0
  AR WILD-TYPE     25     12     16
D82V7, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          2           25
  CLUS_2          1           12
  CLUS_3          0           16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AR MUTATED        1      1      0      1      0      0
  AR WILD-TYPE      8     16      7     11      6      5
D82V8, multiclass
        clus
vv       AR MUTATED AR WILD-TYPE
  CLUS_1          1            8
  CLUS_2          1           16
  CLUS_3          0            7
  CLUS_4          1           11
  CLUS_5          0            6
  CLUS_6          0            5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = KCTD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        1      1      0      2      0
  KCTD3 WILD-TYPE     20     18      8      6      6
D83V1, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             2               6
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        0      0      1      0      1
  KCTD3 WILD-TYPE     13      8     13     14      6
D83V2, multiclass
[1] "Remove cluster labels:" "KCTD3 MUTATED"         
clus
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LO      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        0      0      1      1
  KCTD3 WILD-TYPE     17      8     13     15
D83V3, multiclass
[1] "Remove cluster labels:" "KCTD3 MUTATED"         
clus
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-PK-A5H8 
"KCTD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        0      1      0      1
  KCTD3 WILD-TYPE     16     15      5     17
D83V4, multiclass
[1] "Remove cluster labels:" "KCTD3 MUTATED"         
clus
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-PK-A5H8 
"KCTD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED        0      1      1
  KCTD3 WILD-TYPE     26     11     17
D83V5, multiclass
[1] "Remove cluster labels:" "KCTD3 MUTATED"         
clus
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LO      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        0      1      0      1      0
  KCTD3 WILD-TYPE     13     18      8     13      2
D83V6, multiclass
[1] "Remove cluster labels:" "KCTD3 MUTATED"         
clus
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LO      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED        0      1      1
  KCTD3 WILD-TYPE     27     12     15
D83V7, multiclass
[1] "Remove cluster labels:" "KCTD3 MUTATED"         
clus
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LO      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCTD3 MUTATED        0      1      0      1      0      0
  KCTD3 WILD-TYPE      9     16      7     11      6      5
D83V8, multiclass
[1] "Remove cluster labels:" "KCTD3 MUTATED"         
clus
  KCTD3 MUTATED KCTD3 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-OR-A5LO      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8 
"KCTD3 WILD-TYPE" "KCTD3 WILD-TYPE" 

Clustering(84) Variable = FZD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD1 MUTATED        1      0      1      1      0
  FZD1 WILD-TYPE     20     19      7      7      6
D84V1, multiclass
        clus
vv       FZD1 MUTATED FZD1 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            0             19
  CLUS_3            1              7
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD1 MUTATED        0      0      1      0      0
  FZD1 WILD-TYPE     13      8     13     14      7
D84V2, multiclass
[1] "Remove cluster labels:" "FZD1 MUTATED"          
clus
  FZD1 MUTATED FZD1 WILD-TYPE 
             1             55 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K9     TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KV     TCGA-OR-A5KW     TCGA-OR-A5KX     TCGA-OR-A5KZ 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5     TCGA-OR-A5L6 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB     TCGA-OR-A5LC 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK     TCGA-OR-A5LL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LP     TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-PA-A5YG     TCGA-PK-A5H8     TCGA-PK-A5HB 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD1 MUTATED        0      1      0      0
  FZD1 WILD-TYPE     17      7     14     16
D84V3, multiclass
[1] "Remove cluster labels:" "FZD1 MUTATED"          
clus
  FZD1 MUTATED FZD1 WILD-TYPE 
             1             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J5 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8     TCGA-OR-A5JA 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD     TCGA-OR-A5JF 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL     TCGA-OR-A5JP 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT     TCGA-OR-A5JV 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY     TCGA-OR-A5K2 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K8     TCGA-OR-A5K9 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KW     TCGA-OR-A5KX     TCGA-OR-A5KZ     TCGA-OR-A5L3 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L4     TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LA     TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LJ     TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LP 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD1 MUTATED        0      1      0      0
  FZD1 WILD-TYPE     16     15      5     18
D84V4, multiclass
[1] "Remove cluster labels:" "FZD1 MUTATED"          
clus
  FZD1 MUTATED FZD1 WILD-TYPE 
             1             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J5 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8     TCGA-OR-A5JA 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD     TCGA-OR-A5JF 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL     TCGA-OR-A5JP 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT     TCGA-OR-A5JV 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY     TCGA-OR-A5K2 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K8     TCGA-OR-A5K9 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KW     TCGA-OR-A5KX     TCGA-OR-A5KZ     TCGA-OR-A5L3 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L4     TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LA     TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LJ     TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LP 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD1 MUTATED        1      0      0
  FZD1 WILD-TYPE     25     12     18
D84V5, multiclass
[1] "Remove cluster labels:" "FZD1 MUTATED"          
clus
  FZD1 MUTATED FZD1 WILD-TYPE 
             1             55 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K9     TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KV     TCGA-OR-A5KW     TCGA-OR-A5KX     TCGA-OR-A5KZ 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5     TCGA-OR-A5L6 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB     TCGA-OR-A5LC 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK     TCGA-OR-A5LL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LP     TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-PA-A5YG     TCGA-PK-A5H8     TCGA-PK-A5HB 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD1 MUTATED        1      0      0      0      0
  FZD1 WILD-TYPE     12     19      8     14      2
D84V6, multiclass
[1] "Remove cluster labels:" "FZD1 MUTATED"          
clus
  FZD1 MUTATED FZD1 WILD-TYPE 
             1             55 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K9     TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KV     TCGA-OR-A5KW     TCGA-OR-A5KX     TCGA-OR-A5KZ 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5     TCGA-OR-A5L6 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB     TCGA-OR-A5LC 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK     TCGA-OR-A5LL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LP     TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-PA-A5YG     TCGA-PK-A5H8     TCGA-PK-A5HB 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD1 MUTATED        1      0      0
  FZD1 WILD-TYPE     26     13     16
D84V7, multiclass
[1] "Remove cluster labels:" "FZD1 MUTATED"          
clus
  FZD1 MUTATED FZD1 WILD-TYPE 
             1             55 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K9     TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KV     TCGA-OR-A5KW     TCGA-OR-A5KX     TCGA-OR-A5KZ 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5     TCGA-OR-A5L6 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB     TCGA-OR-A5LC 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK     TCGA-OR-A5LL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LP     TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-PA-A5YG     TCGA-PK-A5H8     TCGA-PK-A5HB 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FZD1 MUTATED        1      0      0      0      0      0
  FZD1 WILD-TYPE      8     17      7     12      6      5
D84V8, multiclass
[1] "Remove cluster labels:" "FZD1 MUTATED"          
clus
  FZD1 MUTATED FZD1 WILD-TYPE 
             1             55 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K8 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5K9     TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5KV     TCGA-OR-A5KW     TCGA-OR-A5KX     TCGA-OR-A5KZ 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5     TCGA-OR-A5L6 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB     TCGA-OR-A5LC 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK     TCGA-OR-A5LL 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-OR-A5LP     TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 
    TCGA-PA-A5YG     TCGA-PK-A5H8     TCGA-PK-A5HB 
"FZD1 WILD-TYPE" "FZD1 WILD-TYPE" "FZD1 WILD-TYPE" 

Clustering(85) Variable = ZC3H12D MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H12D MUTATED        0      0      0      3      0
  ZC3H12D WILD-TYPE     21     19      8      5      6
D85V1, multiclass
        clus
vv       ZC3H12D MUTATED ZC3H12D WILD-TYPE
  CLUS_1               0                21
  CLUS_2               0                19
  CLUS_3               0                 8
  CLUS_4               3                 5
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H12D MUTATED        0      0      2      0      0
  ZC3H12D WILD-TYPE     13      8     12     14      7
D85V2, multiclass
[1] "Remove cluster labels:" "ZC3H12D MUTATED"       
clus
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H12D MUTATED        0      0      2      0
  ZC3H12D WILD-TYPE     17      8     12     16
D85V3, multiclass
[1] "Remove cluster labels:" "ZC3H12D MUTATED"       
clus
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                2                53 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI        TCGA-OR-A5JK 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ        TCGA-OR-A5JR 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW        TCGA-OR-A5JX 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4        TCGA-OR-A5K5 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO        TCGA-OR-A5KT 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW        TCGA-OR-A5KX 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ        TCGA-OR-A5LK 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG        TCGA-PK-A5H8 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-PK-A5HB 
"ZC3H12D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H12D MUTATED        0      2      0      0
  ZC3H12D WILD-TYPE     16     14      5     18
D85V4, multiclass
[1] "Remove cluster labels:" "ZC3H12D MUTATED"       
clus
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                2                53 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI        TCGA-OR-A5JK 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ        TCGA-OR-A5JR 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW        TCGA-OR-A5JX 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4        TCGA-OR-A5K5 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO        TCGA-OR-A5KT 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW        TCGA-OR-A5KX 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ        TCGA-OR-A5LK 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG        TCGA-PK-A5H8 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-PK-A5HB 
"ZC3H12D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H12D MUTATED        1      0      1
  ZC3H12D WILD-TYPE     25     12     17
D85V5, multiclass
[1] "Remove cluster labels:" "ZC3H12D MUTATED"       
clus
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H12D MUTATED        2      0      0      0      0
  ZC3H12D WILD-TYPE     11     19      8     14      2
D85V6, multiclass
[1] "Remove cluster labels:" "ZC3H12D MUTATED"       
clus
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H12D MUTATED        1      0      1
  ZC3H12D WILD-TYPE     26     13     15
D85V7, multiclass
[1] "Remove cluster labels:" "ZC3H12D MUTATED"       
clus
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H12D MUTATED        1      0      0      0      0      1
  ZC3H12D WILD-TYPE      8     17      7     12      6      4
D85V8, multiclass
[1] "Remove cluster labels:" "ZC3H12D MUTATED"       
clus
  ZC3H12D MUTATED ZC3H12D WILD-TYPE 
                2                54 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"ZC3H12D WILD-TYPE" "ZC3H12D WILD-TYPE" 

Clustering(86) Variable = KRTAP5-5 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        1      1      1      2      0
  KRTAP5-5 WILD-TYPE     20     18      7      6      6
D86V1, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 20
  CLUS_2                1                 18
  CLUS_3                1                  7
  CLUS_4                2                  6
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        1      0      1      1      0
  KRTAP5-5 WILD-TYPE     12      8     13     13      7
D86V2, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 12
  CLUS_2                0                  8
  CLUS_3                1                 13
  CLUS_4                1                 13
  CLUS_5                0                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-5 MUTATED        2      1      0      0
  KRTAP5-5 WILD-TYPE     15      7     14     16
D86V3, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                 15
  CLUS_2                1                  7
  CLUS_3                0                 14
  CLUS_4                0                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-5 MUTATED        1      1      1      0
  KRTAP5-5 WILD-TYPE     15     15      4     18
D86V4, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 15
  CLUS_2                1                 15
  CLUS_3                1                  4
  CLUS_4                0                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-5 MUTATED        2      1      0
  KRTAP5-5 WILD-TYPE     24     11     18
D86V5, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                1                 11
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        0      1      0      1      1
  KRTAP5-5 WILD-TYPE     13     18      8     13      1
D86V6, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                 13
  CLUS_2                1                 18
  CLUS_3                0                  8
  CLUS_4                1                 13
  CLUS_5                1                  1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-5 MUTATED        2      1      0
  KRTAP5-5 WILD-TYPE     25     12     16
D86V7, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                1                 12
  CLUS_3                0                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP5-5 MUTATED        0      0      0      1      2      0
  KRTAP5-5 WILD-TYPE      9     17      7     11      4      5
D86V8, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                0                 17
  CLUS_3                0                  7
  CLUS_4                1                 11
  CLUS_5                2                  4
  CLUS_6                0                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = AKAP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP2 MUTATED        1      0      0      2      1
  AKAP2 WILD-TYPE     20     19      8      6      5
D87V1, multiclass
        clus
vv       AKAP2 MUTATED AKAP2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             2               6
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP2 MUTATED        0      0      2      2      0
  AKAP2 WILD-TYPE     13      8     12     12      7
D87V2, multiclass
        clus
vv       AKAP2 MUTATED AKAP2 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             2              12
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP2 MUTATED        1      0      2      1
  AKAP2 WILD-TYPE     16      8     12     15
D87V3, multiclass
        clus
vv       AKAP2 MUTATED AKAP2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP2 MUTATED        0      2      1      1
  AKAP2 WILD-TYPE     16     14      4     17
D87V4, multiclass
        clus
vv       AKAP2 MUTATED AKAP2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              14
  CLUS_3             1               4
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP2 MUTATED        1      1      2
  AKAP2 WILD-TYPE     25     11     16
D87V5, multiclass
        clus
vv       AKAP2 MUTATED AKAP2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              11
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP2 MUTATED        1      3      0      0      0
  AKAP2 WILD-TYPE     12     16      8     14      2
D87V6, multiclass
        clus
vv       AKAP2 MUTATED AKAP2 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             3              16
  CLUS_3             0               8
  CLUS_4             0              14
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AKAP2 MUTATED        1      2      1
  AKAP2 WILD-TYPE     26     11     15
D87V7, multiclass
        clus
vv       AKAP2 MUTATED AKAP2 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              11
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKAP2 MUTATED        1      2      0      0      1      0
  AKAP2 WILD-TYPE      8     15      7     12      5      5
D87V8, multiclass
        clus
vv       AKAP2 MUTATED AKAP2 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              15
  CLUS_3             0               7
  CLUS_4             0              12
  CLUS_5             1               5
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = KBTBD13 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD13 MUTATED        5      3      0      1      0
  KBTBD13 WILD-TYPE     16     16      8      7      6
D88V1, multiclass
        clus
vv       KBTBD13 MUTATED KBTBD13 WILD-TYPE
  CLUS_1               5                16
  CLUS_2               3                16
  CLUS_3               0                 8
  CLUS_4               1                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD13 MUTATED        3      1      0      2      3
  KBTBD13 WILD-TYPE     10      7     14     12      4
D88V2, multiclass
        clus
vv       KBTBD13 MUTATED KBTBD13 WILD-TYPE
  CLUS_1               3                10
  CLUS_2               1                 7
  CLUS_3               0                14
  CLUS_4               2                12
  CLUS_5               3                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD13 MUTATED        4      1      1      3
  KBTBD13 WILD-TYPE     13      7     13     13
D88V3, multiclass
        clus
vv       KBTBD13 MUTATED KBTBD13 WILD-TYPE
  CLUS_1               4                13
  CLUS_2               1                 7
  CLUS_3               1                13
  CLUS_4               3                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KBTBD13 MUTATED        4      0      1      4
  KBTBD13 WILD-TYPE     12     16      4     14
D88V4, multiclass
        clus
vv       KBTBD13 MUTATED KBTBD13 WILD-TYPE
  CLUS_1               4                12
  CLUS_2               0                16
  CLUS_3               1                 4
  CLUS_4               4                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KBTBD13 MUTATED        4      2      3
  KBTBD13 WILD-TYPE     22     10     15
D88V5, multiclass
        clus
vv       KBTBD13 MUTATED KBTBD13 WILD-TYPE
  CLUS_1               4                22
  CLUS_2               2                10
  CLUS_3               3                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KBTBD13 MUTATED        0      4      2      3      0
  KBTBD13 WILD-TYPE     13     15      6     11      2
D88V6, multiclass
        clus
vv       KBTBD13 MUTATED KBTBD13 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               4                15
  CLUS_3               2                 6
  CLUS_4               3                11
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KBTBD13 MUTATED        4      2      3
  KBTBD13 WILD-TYPE     23     11     13
D88V7, multiclass
        clus
vv       KBTBD13 MUTATED KBTBD13 WILD-TYPE
  CLUS_1               4                23
  CLUS_2               2                11
  CLUS_3               3                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KBTBD13 MUTATED        0      4      1      2      1      1
  KBTBD13 WILD-TYPE      9     13      6     10      5      4
D88V8, multiclass
        clus
vv       KBTBD13 MUTATED KBTBD13 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               4                13
  CLUS_3               1                 6
  CLUS_4               2                10
  CLUS_5               1                 5
  CLUS_6               1                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = SPIRE2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPIRE2 MUTATED        0      1      1      1      0
  SPIRE2 WILD-TYPE     21     18      7      7      6
D89V1, multiclass
        clus
vv       SPIRE2 MUTATED SPIRE2 WILD-TYPE
  CLUS_1              0               21
  CLUS_2              1               18
  CLUS_3              1                7
  CLUS_4              1                7
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPIRE2 MUTATED        1      0      0      0      2
  SPIRE2 WILD-TYPE     12      8     14     14      5
D89V2, multiclass
        clus
vv       SPIRE2 MUTATED SPIRE2 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              0                8
  CLUS_3              0               14
  CLUS_4              0               14
  CLUS_5              2                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPIRE2 MUTATED        1      0      1      1
  SPIRE2 WILD-TYPE     16      8     13     15
D89V3, multiclass
        clus
vv       SPIRE2 MUTATED SPIRE2 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              0                8
  CLUS_3              1               13
  CLUS_4              1               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPIRE2 MUTATED        1      0      0      2
  SPIRE2 WILD-TYPE     15     16      5     16
D89V4, multiclass
        clus
vv       SPIRE2 MUTATED SPIRE2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              0               16
  CLUS_3              0                5
  CLUS_4              2               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIRE2 MUTATED        2      0      1
  SPIRE2 WILD-TYPE     24     12     17
D89V5, multiclass
        clus
vv       SPIRE2 MUTATED SPIRE2 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              0               12
  CLUS_3              1               17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPIRE2 MUTATED        0      1      1      1      0
  SPIRE2 WILD-TYPE     13     18      7     13      2
D89V6, multiclass
        clus
vv       SPIRE2 MUTATED SPIRE2 WILD-TYPE
  CLUS_1              0               13
  CLUS_2              1               18
  CLUS_3              1                7
  CLUS_4              1               13
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPIRE2 MUTATED        2      0      1
  SPIRE2 WILD-TYPE     25     13     15
D89V7, multiclass
        clus
vv       SPIRE2 MUTATED SPIRE2 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              0               13
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPIRE2 MUTATED        0      1      1      1      0      0
  SPIRE2 WILD-TYPE      9     16      6     11      6      5
D89V8, multiclass
        clus
vv       SPIRE2 MUTATED SPIRE2 WILD-TYPE
  CLUS_1              0                9
  CLUS_2              1               16
  CLUS_3              1                6
  CLUS_4              1               11
  CLUS_5              0                6
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = NPTX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPTX1 MUTATED        2      0      0      0      1
  NPTX1 WILD-TYPE     19     19      8      8      5
D90V1, multiclass
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             0               8
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPTX1 MUTATED        1      0      1      1      0
  NPTX1 WILD-TYPE     12      8     13     13      7
D90V2, multiclass
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPTX1 MUTATED        1      0      1      1
  NPTX1 WILD-TYPE     16      8     13     15
D90V3, multiclass
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPTX1 MUTATED        1      0      0      2
  NPTX1 WILD-TYPE     15     16      5     16
D90V4, multiclass
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             0              16
  CLUS_3             0               5
  CLUS_4             2              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPTX1 MUTATED        1      0      2
  NPTX1 WILD-TYPE     25     12     16
D90V5, multiclass
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              12
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPTX1 MUTATED        0      1      1      1      0
  NPTX1 WILD-TYPE     13     18      7     13      2
D90V6, multiclass
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPTX1 MUTATED        1      0      2
  NPTX1 WILD-TYPE     26     13     14
D90V7, multiclass
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             0              13
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NPTX1 MUTATED        0      1      0      1      0      1
  NPTX1 WILD-TYPE      9     16      7     11      6      4
D90V8, multiclass
        clus
vv       NPTX1 MUTATED NPTX1 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             1              16
  CLUS_3             0               7
  CLUS_4             1              11
  CLUS_5             0               6
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = ADAD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAD2 MUTATED        1      0      1      1      1
  ADAD2 WILD-TYPE     20     19      7      7      5
D91V1, multiclass
        clus
vv       ADAD2 MUTATED ADAD2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             1               7
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAD2 MUTATED        0      0      2      1      1
  ADAD2 WILD-TYPE     13      8     12     13      6
D91V2, multiclass
        clus
vv       ADAD2 MUTATED ADAD2 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             1              13
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAD2 MUTATED        1      0      2      1
  ADAD2 WILD-TYPE     16      8     12     15
D91V3, multiclass
        clus
vv       ADAD2 MUTATED ADAD2 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAD2 MUTATED        0      2      1      1
  ADAD2 WILD-TYPE     16     14      4     17
D91V4, multiclass
        clus
vv       ADAD2 MUTATED ADAD2 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             2              14
  CLUS_3             1               4
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADAD2 MUTATED        0      3      1
  ADAD2 WILD-TYPE     26      9     17
D91V5, multiclass
        clus
vv       ADAD2 MUTATED ADAD2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3               9
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAD2 MUTATED        0      3      0      1      0
  ADAD2 WILD-TYPE     13     16      8     13      2
D91V6, multiclass
        clus
vv       ADAD2 MUTATED ADAD2 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             3              16
  CLUS_3             0               8
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADAD2 MUTATED        0      3      1
  ADAD2 WILD-TYPE     27     10     15
D91V7, multiclass
        clus
vv       ADAD2 MUTATED ADAD2 WILD-TYPE
  CLUS_1             0              27
  CLUS_2             3              10
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAD2 MUTATED        0      2      0      1      1      0
  ADAD2 WILD-TYPE      9     15      7     11      5      5
D91V8, multiclass
        clus
vv       ADAD2 MUTATED ADAD2 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             2              15
  CLUS_3             0               7
  CLUS_4             1              11
  CLUS_5             1               5
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = SEZ6L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6L2 MUTATED        3      3      0      0      2
  SEZ6L2 WILD-TYPE     18     16      8      8      4
D92V1, multiclass
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  CLUS_1              3               18
  CLUS_2              3               16
  CLUS_3              0                8
  CLUS_4              0                8
  CLUS_5              2                4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6L2 MUTATED        2      2      1      1      0
  SEZ6L2 WILD-TYPE     11      6     13     13      7
D92V2, multiclass
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              2                6
  CLUS_3              1               13
  CLUS_4              1               13
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6L2 MUTATED        2      0      2      2
  SEZ6L2 WILD-TYPE     15      8     12     14
D92V3, multiclass
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0                8
  CLUS_3              2               12
  CLUS_4              2               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6L2 MUTATED        2      2      0      2
  SEZ6L2 WILD-TYPE     14     14      5     16
D92V4, multiclass
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  CLUS_1              2               14
  CLUS_2              2               14
  CLUS_3              0                5
  CLUS_4              2               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEZ6L2 MUTATED        4      0      2
  SEZ6L2 WILD-TYPE     22     12     16
D92V5, multiclass
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              0               12
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6L2 MUTATED        1      1      2      2      0
  SEZ6L2 WILD-TYPE     12     18      6     12      2
D92V6, multiclass
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              1               18
  CLUS_3              2                6
  CLUS_4              2               12
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEZ6L2 MUTATED        4      0      2
  SEZ6L2 WILD-TYPE     23     13     14
D92V7, multiclass
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              0               13
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEZ6L2 MUTATED        1      1      1      2      0      1
  SEZ6L2 WILD-TYPE      8     16      6     10      6      4
D92V8, multiclass
        clus
vv       SEZ6L2 MUTATED SEZ6L2 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              1               16
  CLUS_3              1                6
  CLUS_4              2               10
  CLUS_5              0                6
  CLUS_6              1                4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = NEFH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEFH MUTATED        6      0      1      0      0
  NEFH WILD-TYPE     15     19      7      8      6
D93V1, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            6             15
  CLUS_2            0             19
  CLUS_3            1              7
  CLUS_4            0              8
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEFH MUTATED        3      0      0      2      0
  NEFH WILD-TYPE     10      8     14     12      7
D93V2, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            3             10
  CLUS_2            0              8
  CLUS_3            0             14
  CLUS_4            2             12
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        4      0      0      0
  NEFH WILD-TYPE     13      8     14     16
D93V3, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            4             13
  CLUS_2            0              8
  CLUS_3            0             14
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEFH MUTATED        2      0      2      0
  NEFH WILD-TYPE     14     16      3     18
D93V4, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            2             14
  CLUS_2            0             16
  CLUS_3            2              3
  CLUS_4            0             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        3      2      0
  NEFH WILD-TYPE     23     10     18
D93V5, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            3             23
  CLUS_2            2             10
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEFH MUTATED        1      1      0      3      0
  NEFH WILD-TYPE     12     18      8     11      2
D93V6, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1             12
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            3             11
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEFH MUTATED        3      2      0
  NEFH WILD-TYPE     24     11     16
D93V7, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            3             24
  CLUS_2            2             11
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEFH MUTATED        1      0      0      3      1      0
  NEFH WILD-TYPE      8     17      7      9      5      5
D93V8, multiclass
        clus
vv       NEFH MUTATED NEFH WILD-TYPE
  CLUS_1            1              8
  CLUS_2            0             17
  CLUS_3            0              7
  CLUS_4            3              9
  CLUS_5            1              5
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = DLEU7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLEU7 MUTATED        2      0      1      0      0
  DLEU7 WILD-TYPE     19     19      7      8      6
D94V1, multiclass
        clus
vv       DLEU7 MUTATED DLEU7 WILD-TYPE
  CLUS_1             2              19
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLEU7 MUTATED        0      0      1      0      0
  DLEU7 WILD-TYPE     13      8     13     14      7
D94V2, multiclass
[1] "Remove cluster labels:" "DLEU7 MUTATED"         
clus
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              1              55 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8      TCGA-PK-A5HB 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLEU7 MUTATED        0      0      1      0
  DLEU7 WILD-TYPE     17      8     13     16
D94V3, multiclass
[1] "Remove cluster labels:" "DLEU7 MUTATED"         
clus
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              1              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K9      TCGA-OR-A5KO 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLEU7 MUTATED        0      1      0      0
  DLEU7 WILD-TYPE     16     15      5     18
D94V4, multiclass
[1] "Remove cluster labels:" "DLEU7 MUTATED"         
clus
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              1              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K9      TCGA-OR-A5KO 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DLEU7 MUTATED        0      1      0
  DLEU7 WILD-TYPE     26     11     18
D94V5, multiclass
[1] "Remove cluster labels:" "DLEU7 MUTATED"         
clus
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              1              55 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8      TCGA-PK-A5HB 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLEU7 MUTATED        0      1      0      0      0
  DLEU7 WILD-TYPE     13     18      8     14      2
D94V6, multiclass
[1] "Remove cluster labels:" "DLEU7 MUTATED"         
clus
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              1              55 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8      TCGA-PK-A5HB 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DLEU7 MUTATED        0      1      0
  DLEU7 WILD-TYPE     27     12     16
D94V7, multiclass
[1] "Remove cluster labels:" "DLEU7 MUTATED"         
clus
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              1              55 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8      TCGA-PK-A5HB 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLEU7 MUTATED        0      1      0      0      0      0
  DLEU7 WILD-TYPE      9     16      7     12      6      5
D94V8, multiclass
[1] "Remove cluster labels:" "DLEU7 MUTATED"         
clus
  DLEU7 MUTATED DLEU7 WILD-TYPE 
              1              55 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LJ      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 
     TCGA-PA-A5YG      TCGA-PK-A5H8      TCGA-PK-A5HB 
"DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" "DLEU7 WILD-TYPE" 

Clustering(95) Variable = AMDHD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMDHD1 MUTATED        3      2      1      5      0
  AMDHD1 WILD-TYPE     18     17      7      3      6
D95V1, multiclass
        clus
vv       AMDHD1 MUTATED AMDHD1 WILD-TYPE
  CLUS_1              3               18
  CLUS_2              2               17
  CLUS_3              1                7
  CLUS_4              5                3
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMDHD1 MUTATED        1      1      4      2      1
  AMDHD1 WILD-TYPE     12      7     10     12      6
D95V2, multiclass
        clus
vv       AMDHD1 MUTATED AMDHD1 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              1                7
  CLUS_3              4               10
  CLUS_4              2               12
  CLUS_5              1                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMDHD1 MUTATED        3      2      3      1
  AMDHD1 WILD-TYPE     14      6     11     15
D95V3, multiclass
        clus
vv       AMDHD1 MUTATED AMDHD1 WILD-TYPE
  CLUS_1              3               14
  CLUS_2              2                6
  CLUS_3              3               11
  CLUS_4              1               15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMDHD1 MUTATED        1      4      2      2
  AMDHD1 WILD-TYPE     15     12      3     16
D95V4, multiclass
        clus
vv       AMDHD1 MUTATED AMDHD1 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4               12
  CLUS_3              2                3
  CLUS_4              2               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AMDHD1 MUTATED        3      4      2
  AMDHD1 WILD-TYPE     23      8     16
D95V5, multiclass
        clus
vv       AMDHD1 MUTATED AMDHD1 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              4                8
  CLUS_3              2               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMDHD1 MUTATED        1      4      1      3      0
  AMDHD1 WILD-TYPE     12     15      7     11      2
D95V6, multiclass
        clus
vv       AMDHD1 MUTATED AMDHD1 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              4               15
  CLUS_3              1                7
  CLUS_4              3               11
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AMDHD1 MUTATED        3      5      1
  AMDHD1 WILD-TYPE     24      8     15
D95V7, multiclass
        clus
vv       AMDHD1 MUTATED AMDHD1 WILD-TYPE
  CLUS_1              3               24
  CLUS_2              5                8
  CLUS_3              1               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMDHD1 MUTATED        1      3      1      3      1      0
  AMDHD1 WILD-TYPE      8     14      6      9      5      5
D95V8, multiclass
        clus
vv       AMDHD1 MUTATED AMDHD1 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              3               14
  CLUS_3              1                6
  CLUS_4              3                9
  CLUS_5              1                5
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = GLTSCR2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTSCR2 MUTATED        4      0      0      1      0
  GLTSCR2 WILD-TYPE     17     19      8      7      6
D96V1, multiclass
        clus
vv       GLTSCR2 MUTATED GLTSCR2 WILD-TYPE
  CLUS_1               4                17
  CLUS_2               0                19
  CLUS_3               0                 8
  CLUS_4               1                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTSCR2 MUTATED        2      0      1      1      0
  GLTSCR2 WILD-TYPE     11      8     13     13      7
D96V2, multiclass
        clus
vv       GLTSCR2 MUTATED GLTSCR2 WILD-TYPE
  CLUS_1               2                11
  CLUS_2               0                 8
  CLUS_3               1                13
  CLUS_4               1                13
  CLUS_5               0                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTSCR2 MUTATED        3      0      1      0
  GLTSCR2 WILD-TYPE     14      8     13     16
D96V3, multiclass
        clus
vv       GLTSCR2 MUTATED GLTSCR2 WILD-TYPE
  CLUS_1               3                14
  CLUS_2               0                 8
  CLUS_3               1                13
  CLUS_4               0                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTSCR2 MUTATED        2      1      1      0
  GLTSCR2 WILD-TYPE     14     15      4     18
D96V4, multiclass
        clus
vv       GLTSCR2 MUTATED GLTSCR2 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               1                15
  CLUS_3               1                 4
  CLUS_4               0                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLTSCR2 MUTATED        2      1      1
  GLTSCR2 WILD-TYPE     24     11     17
D96V5, multiclass
        clus
vv       GLTSCR2 MUTATED GLTSCR2 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                11
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTSCR2 MUTATED        0      2      0      2      0
  GLTSCR2 WILD-TYPE     13     17      8     12      2
D96V6, multiclass
        clus
vv       GLTSCR2 MUTATED GLTSCR2 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               2                17
  CLUS_3               0                 8
  CLUS_4               2                12
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GLTSCR2 MUTATED        2      2      0
  GLTSCR2 WILD-TYPE     25     11     16
D96V7, multiclass
        clus
vv       GLTSCR2 MUTATED GLTSCR2 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                11
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLTSCR2 MUTATED        0      1      0      2      1      0
  GLTSCR2 WILD-TYPE      9     16      7     10      5      5
D96V8, multiclass
        clus
vv       GLTSCR2 MUTATED GLTSCR2 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               1                16
  CLUS_3               0                 7
  CLUS_4               2                10
  CLUS_5               1                 5
  CLUS_6               0                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = PLEC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEC MUTATED        5      6      1      1      0
  PLEC WILD-TYPE     16     13      7      7      6
D97V1, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            5             16
  CLUS_2            6             13
  CLUS_3            1              7
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEC MUTATED        2      2      1      3      2
  PLEC WILD-TYPE     11      6     13     11      5
D97V2, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            2             11
  CLUS_2            2              6
  CLUS_3            1             13
  CLUS_4            3             11
  CLUS_5            2              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEC MUTATED        2      0      5      3
  PLEC WILD-TYPE     15      8      9     13
D97V3, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0              8
  CLUS_3            5              9
  CLUS_4            3             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEC MUTATED        2      4      0      4
  PLEC WILD-TYPE     14     12      5     14
D97V4, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            2             14
  CLUS_2            4             12
  CLUS_3            0              5
  CLUS_4            4             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        6      2      2
  PLEC WILD-TYPE     20     10     16
D97V5, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            6             20
  CLUS_2            2             10
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEC MUTATED        4      2      2      2      0
  PLEC WILD-TYPE      9     17      6     12      2
D97V6, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            4              9
  CLUS_2            2             17
  CLUS_3            2              6
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLEC MUTATED        7      1      2
  PLEC WILD-TYPE     20     12     14
D97V7, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            7             20
  CLUS_2            1             12
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEC MUTATED        2      2      3      2      0      1
  PLEC WILD-TYPE      7     15      4     10      6      4
D97V8, multiclass
        clus
vv       PLEC MUTATED PLEC WILD-TYPE
  CLUS_1            2              7
  CLUS_2            2             15
  CLUS_3            3              4
  CLUS_4            2             10
  CLUS_5            0              6
  CLUS_6            1              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = MAP7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7 MUTATED        2      1      0      0      0
  MAP7 WILD-TYPE     19     18      8      8      6
D98V1, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            0              8
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7 MUTATED        1      0      0      1      1
  MAP7 WILD-TYPE     12      8     14     13      6
D98V2, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            0              8
  CLUS_3            0             14
  CLUS_4            1             13
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7 MUTATED        1      0      1      1
  MAP7 WILD-TYPE     16      8     13     15
D98V3, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0              8
  CLUS_3            1             13
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7 MUTATED        1      0      0      2
  MAP7 WILD-TYPE     15     16      5     16
D98V4, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            0             16
  CLUS_3            0              5
  CLUS_4            2             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP7 MUTATED        1      0      2
  MAP7 WILD-TYPE     25     12     16
D98V5, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             12
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7 MUTATED        0      1      1      1      0
  MAP7 WILD-TYPE     13     18      7     13      2
D98V6, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1             18
  CLUS_3            1              7
  CLUS_4            1             13
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP7 MUTATED        1      0      2
  MAP7 WILD-TYPE     26     13     14
D98V7, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            1             26
  CLUS_2            0             13
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP7 MUTATED        0      1      0      1      0      1
  MAP7 WILD-TYPE      9     16      7     11      6      4
D98V8, multiclass
        clus
vv       MAP7 MUTATED MAP7 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            1             16
  CLUS_3            0              7
  CLUS_4            1             11
  CLUS_5            0              6
  CLUS_6            1              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = DSPP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSPP MUTATED        4      4      1      1      0
  DSPP WILD-TYPE     17     15      7      7      6
D99V1, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            4             17
  CLUS_2            4             15
  CLUS_3            1              7
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSPP MUTATED        1      4      1      3      0
  DSPP WILD-TYPE     12      4     13     11      7
D99V2, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            1             12
  CLUS_2            4              4
  CLUS_3            1             13
  CLUS_4            3             11
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSPP MUTATED        3      1      2      3
  DSPP WILD-TYPE     14      7     12     13
D99V3, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            3             14
  CLUS_2            1              7
  CLUS_3            2             12
  CLUS_4            3             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSPP MUTATED        4      1      1      3
  DSPP WILD-TYPE     12     15      4     15
D99V4, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            4             12
  CLUS_2            1             15
  CLUS_3            1              4
  CLUS_4            3             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSPP MUTATED        3      3      3
  DSPP WILD-TYPE     23      9     15
D99V5, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            3             23
  CLUS_2            3              9
  CLUS_3            3             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSPP MUTATED        1      4      1      2      1
  DSPP WILD-TYPE     12     15      7     12      1
D99V6, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            1             12
  CLUS_2            4             15
  CLUS_3            1              7
  CLUS_4            2             12
  CLUS_5            1              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSPP MUTATED        3      4      2
  DSPP WILD-TYPE     24      9     14
D99V7, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            3             24
  CLUS_2            4              9
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DSPP MUTATED        1      3      1      1      3      0
  DSPP WILD-TYPE      8     14      6     11      3      5
D99V8, multiclass
        clus
vv       DSPP MUTATED DSPP WILD-TYPE
  CLUS_1            1              8
  CLUS_2            3             14
  CLUS_3            1              6
  CLUS_4            1             11
  CLUS_5            3              3
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = CRIPAK MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRIPAK MUTATED        1      4      1      3      1
  CRIPAK WILD-TYPE     20     15      7      5      5
D100V1, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              1               20
  CLUS_2              4               15
  CLUS_3              1                7
  CLUS_4              3                5
  CLUS_5              1                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRIPAK MUTATED        2      1      2      2      2
  CRIPAK WILD-TYPE     11      7     12     12      5
D100V2, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              2               11
  CLUS_2              1                7
  CLUS_3              2               12
  CLUS_4              2               12
  CLUS_5              2                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRIPAK MUTATED        2      0      3      4
  CRIPAK WILD-TYPE     15      8     11     12
D100V3, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              2               15
  CLUS_2              0                8
  CLUS_3              3               11
  CLUS_4              4               12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRIPAK MUTATED        2      2      1      4
  CRIPAK WILD-TYPE     14     14      4     14
D100V4, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              2               14
  CLUS_2              2               14
  CLUS_3              1                4
  CLUS_4              4               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRIPAK MUTATED        5      1      3
  CRIPAK WILD-TYPE     21     11     15
D100V5, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              5               21
  CLUS_2              1               11
  CLUS_3              3               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRIPAK MUTATED        1      4      3      1      0
  CRIPAK WILD-TYPE     12     15      5     13      2
D100V6, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              1               12
  CLUS_2              4               15
  CLUS_3              3                5
  CLUS_4              1               13
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRIPAK MUTATED        5      1      3
  CRIPAK WILD-TYPE     22     12     13
D100V7, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              5               22
  CLUS_2              1               12
  CLUS_3              3               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CRIPAK MUTATED        1      4      3      1      0      0
  CRIPAK WILD-TYPE      8     13      4     11      6      5
D100V8, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              1                8
  CLUS_2              4               13
  CLUS_3              3                4
  CLUS_4              1               11
  CLUS_5              0                6
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = PRKAR1A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAR1A MUTATED        2      1      1      2      0
  PRKAR1A WILD-TYPE     19     18      7      6      6
D101V1, multiclass
        clus
vv       PRKAR1A MUTATED PRKAR1A WILD-TYPE
  CLUS_1               2                19
  CLUS_2               1                18
  CLUS_3               1                 7
  CLUS_4               2                 6
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAR1A MUTATED        1      1      2      1      1
  PRKAR1A WILD-TYPE     12      7     12     13      6
D101V2, multiclass
        clus
vv       PRKAR1A MUTATED PRKAR1A WILD-TYPE
  CLUS_1               1                12
  CLUS_2               1                 7
  CLUS_3               2                12
  CLUS_4               1                13
  CLUS_5               1                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAR1A MUTATED        2      1      3      0
  PRKAR1A WILD-TYPE     15      7     11     16
D101V3, multiclass
        clus
vv       PRKAR1A MUTATED PRKAR1A WILD-TYPE
  CLUS_1               2                15
  CLUS_2               1                 7
  CLUS_3               3                11
  CLUS_4               0                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAR1A MUTATED        1      3      1      1
  PRKAR1A WILD-TYPE     15     13      4     17
D101V4, multiclass
        clus
vv       PRKAR1A MUTATED PRKAR1A WILD-TYPE
  CLUS_1               1                15
  CLUS_2               3                13
  CLUS_3               1                 4
  CLUS_4               1                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRKAR1A MUTATED        5      1      0
  PRKAR1A WILD-TYPE     21     11     18
D101V5, multiclass
        clus
vv       PRKAR1A MUTATED PRKAR1A WILD-TYPE
  CLUS_1               5                21
  CLUS_2               1                11
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAR1A MUTATED        3      1      1      1      0
  PRKAR1A WILD-TYPE     10     18      7     13      2
D101V6, multiclass
        clus
vv       PRKAR1A MUTATED PRKAR1A WILD-TYPE
  CLUS_1               3                10
  CLUS_2               1                18
  CLUS_3               1                 7
  CLUS_4               1                13
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRKAR1A MUTATED        5      1      0
  PRKAR1A WILD-TYPE     22     12     16
D101V7, multiclass
        clus
vv       PRKAR1A MUTATED PRKAR1A WILD-TYPE
  CLUS_1               5                22
  CLUS_2               1                12
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRKAR1A MUTATED        3      1      1      0      1      0
  PRKAR1A WILD-TYPE      6     16      6     12      5      5
D101V8, multiclass
        clus
vv       PRKAR1A MUTATED PRKAR1A WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               1                16
  CLUS_3               1                 6
  CLUS_4               0                12
  CLUS_5               1                 5
  CLUS_6               0                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(102) Variable = CYP4A22 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4A22 MUTATED        1      0      2      1      0
  CYP4A22 WILD-TYPE     20     19      6      7      6
D102V1, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               1                20
  CLUS_2               0                19
  CLUS_3               2                 6
  CLUS_4               1                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4A22 MUTATED        1      1      2      0      0
  CYP4A22 WILD-TYPE     12      7     12     14      7
D102V2, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               1                 7
  CLUS_3               2                12
  CLUS_4               0                14
  CLUS_5               0                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4A22 MUTATED        1      2      1      0
  CYP4A22 WILD-TYPE     16      6     13     16
D102V3, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               2                 6
  CLUS_3               1                13
  CLUS_4               0                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4A22 MUTATED        2      2      0      0
  CYP4A22 WILD-TYPE     14     14      5     18
D102V4, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               2                14
  CLUS_2               2                14
  CLUS_3               0                 5
  CLUS_4               0                18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4A22 MUTATED        2      2      0
  CYP4A22 WILD-TYPE     24     10     18
D102V5, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                10
  CLUS_3               0                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4A22 MUTATED        0      2      0      1      1
  CYP4A22 WILD-TYPE     13     17      8     13      1
D102V6, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               2                17
  CLUS_3               0                 8
  CLUS_4               1                13
  CLUS_5               1                 1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP4A22 MUTATED        2      2      0
  CYP4A22 WILD-TYPE     25     11     16
D102V7, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               2                11
  CLUS_3               0                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP4A22 MUTATED        0      2      0      1      1      0
  CYP4A22 WILD-TYPE      9     15      7     11      5      5
D102V8, multiclass
        clus
vv       CYP4A22 MUTATED CYP4A22 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               2                15
  CLUS_3               0                 7
  CLUS_4               1                11
  CLUS_5               1                 5
  CLUS_6               0                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(103) Variable = NOM1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOM1 MUTATED        2      2      1      1      0
  NOM1 WILD-TYPE     19     17      7      7      6
D103V1, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            2             17
  CLUS_3            1              7
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOM1 MUTATED        1      1      1      0      2
  NOM1 WILD-TYPE     12      7     13     14      5
D103V2, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            0             14
  CLUS_5            2              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOM1 MUTATED        2      0      1      2
  NOM1 WILD-TYPE     15      8     13     14
D103V3, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0              8
  CLUS_3            1             13
  CLUS_4            2             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOM1 MUTATED        2      1      0      2
  NOM1 WILD-TYPE     14     15      5     16
D103V4, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            1             15
  CLUS_3            0              5
  CLUS_4            2             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOM1 MUTATED        2      1      2
  NOM1 WILD-TYPE     24     11     16
D103V5, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             11
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOM1 MUTATED        2      1      1      1      0
  NOM1 WILD-TYPE     11     18      7     13      2
D103V6, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2             11
  CLUS_2            1             18
  CLUS_3            1              7
  CLUS_4            1             13
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOM1 MUTATED        2      1      2
  NOM1 WILD-TYPE     25     12     14
D103V7, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2             25
  CLUS_2            1             12
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOM1 MUTATED        2      1      0      0      1      1
  NOM1 WILD-TYPE      7     16      7     12      5      4
D103V8, multiclass
        clus
vv       NOM1 MUTATED NOM1 WILD-TYPE
  CLUS_1            2              7
  CLUS_2            1             16
  CLUS_3            0              7
  CLUS_4            0             12
  CLUS_5            1              5
  CLUS_6            1              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(104) Variable = RNF135 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF135 MUTATED        1      2      0      0      0
  RNF135 WILD-TYPE     20     17      8      8      6
D104V1, multiclass
        clus
vv       RNF135 MUTATED RNF135 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              2               17
  CLUS_3              0                8
  CLUS_4              0                8
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF135 MUTATED        0      0      0      2      0
  RNF135 WILD-TYPE     13      8     14     12      7
D104V2, multiclass
[1] "Remove cluster labels:" "RNF135 MUTATED"        
clus
  RNF135 MUTATED RNF135 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF135 MUTATED        0      0      0      2
  RNF135 WILD-TYPE     17      8     14     14
D104V3, multiclass
[1] "Remove cluster labels:" "RNF135 MUTATED"        
clus
  RNF135 MUTATED RNF135 WILD-TYPE 
               2               53 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J5 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA       TCGA-OR-A5JB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF       TCGA-OR-A5JI 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP       TCGA-OR-A5JQ 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV       TCGA-OR-A5JW 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2       TCGA-OR-A5K4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA       TCGA-OR-A5LB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-PK-A5HB 
"RNF135 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF135 MUTATED        0      0      1      1
  RNF135 WILD-TYPE     16     16      4     17
D104V4, multiclass
[1] "Remove cluster labels:" "RNF135 MUTATED"        
clus
  RNF135 MUTATED RNF135 WILD-TYPE 
               2               53 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J5 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA       TCGA-OR-A5JB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF       TCGA-OR-A5JI 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP       TCGA-OR-A5JQ 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV       TCGA-OR-A5JW 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2       TCGA-OR-A5K4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA       TCGA-OR-A5LB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-PK-A5HB 
"RNF135 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF135 MUTATED        1      0      1
  RNF135 WILD-TYPE     25     12     17
D104V5, multiclass
[1] "Remove cluster labels:" "RNF135 MUTATED"        
clus
  RNF135 MUTATED RNF135 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF135 MUTATED        0      1      1      0      0
  RNF135 WILD-TYPE     13     18      7     14      2
D104V6, multiclass
[1] "Remove cluster labels:" "RNF135 MUTATED"        
clus
  RNF135 MUTATED RNF135 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF135 MUTATED        1      0      1
  RNF135 WILD-TYPE     26     13     15
D104V7, multiclass
[1] "Remove cluster labels:" "RNF135 MUTATED"        
clus
  RNF135 MUTATED RNF135 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF135 MUTATED        0      1      1      0      0      0
  RNF135 WILD-TYPE      9     16      6     12      6      5
D104V8, multiclass
[1] "Remove cluster labels:" "RNF135 MUTATED"        
clus
  RNF135 MUTATED RNF135 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"RNF135 WILD-TYPE" "RNF135 WILD-TYPE" 

Clustering(105) Variable = C12ORF65 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF65 MUTATED        3      0      0      0      0
  C12ORF65 WILD-TYPE     18     19      8      8      6
D105V1, multiclass
        clus
vv       C12ORF65 MUTATED C12ORF65 WILD-TYPE
  CLUS_1                3                 18
  CLUS_2                0                 19
  CLUS_3                0                  8
  CLUS_4                0                  8
  CLUS_5                0                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF65 MUTATED        3      0      0      0      0
  C12ORF65 WILD-TYPE     10      8     14     14      7
D105V2, multiclass
        clus
vv       C12ORF65 MUTATED C12ORF65 WILD-TYPE
  CLUS_1                3                 10
  CLUS_2                0                  8
  CLUS_3                0                 14
  CLUS_4                0                 14
  CLUS_5                0                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF65 MUTATED        3      0      0      0
  C12ORF65 WILD-TYPE     14      8     14     16
D105V3, multiclass
        clus
vv       C12ORF65 MUTATED C12ORF65 WILD-TYPE
  CLUS_1                3                 14
  CLUS_2                0                  8
  CLUS_3                0                 14
  CLUS_4                0                 16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF65 MUTATED        3      0      0      0
  C12ORF65 WILD-TYPE     13     16      5     18
D105V4, multiclass
        clus
vv       C12ORF65 MUTATED C12ORF65 WILD-TYPE
  CLUS_1                3                 13
  CLUS_2                0                 16
  CLUS_3                0                  5
  CLUS_4                0                 18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF65 MUTATED        2      1      0
  C12ORF65 WILD-TYPE     24     11     18
D105V5, multiclass
        clus
vv       C12ORF65 MUTATED C12ORF65 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                1                 11
  CLUS_3                0                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF65 MUTATED        0      1      0      2      0
  C12ORF65 WILD-TYPE     13     18      8     12      2
D105V6, multiclass
        clus
vv       C12ORF65 MUTATED C12ORF65 WILD-TYPE
  CLUS_1                0                 13
  CLUS_2                1                 18
  CLUS_3                0                  8
  CLUS_4                2                 12
  CLUS_5                0                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF65 MUTATED        2      1      0
  C12ORF65 WILD-TYPE     25     12     16
D105V7, multiclass
        clus
vv       C12ORF65 MUTATED C12ORF65 WILD-TYPE
  CLUS_1                2                 25
  CLUS_2                1                 12
  CLUS_3                0                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C12ORF65 MUTATED        0      1      0      2      0      0
  C12ORF65 WILD-TYPE      9     16      7     10      6      5
D105V8, multiclass
        clus
vv       C12ORF65 MUTATED C12ORF65 WILD-TYPE
  CLUS_1                0                  9
  CLUS_2                1                 16
  CLUS_3                0                  7
  CLUS_4                2                 10
  CLUS_5                0                  6
  CLUS_6                0                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(106) Variable = HLA-B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        1      1      1      2      1
  HLA-B WILD-TYPE     20     18      7      6      5
D106V1, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             2               6
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        2      0      2      2      0
  HLA-B WILD-TYPE     11      8     12     12      7
D106V2, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2              11
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             2              12
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        2      0      2      2
  HLA-B WILD-TYPE     15      8     12     14
D106V3, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2              15
  CLUS_2             0               8
  CLUS_3             2              12
  CLUS_4             2              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        2      2      0      2
  HLA-B WILD-TYPE     14     14      5     16
D106V4, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2              14
  CLUS_2             2              14
  CLUS_3             0               5
  CLUS_4             2              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        2      1      3
  HLA-B WILD-TYPE     24     11     15
D106V5, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              11
  CLUS_3             3              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        3      3      0      0      0
  HLA-B WILD-TYPE     10     16      8     14      2
D106V6, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              10
  CLUS_2             3              16
  CLUS_3             0               8
  CLUS_4             0              14
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        2      1      3
  HLA-B WILD-TYPE     25     12     13
D106V7, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              12
  CLUS_3             3              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-B MUTATED        2      3      0      0      0      1
  HLA-B WILD-TYPE      7     14      7     12      6      4
D106V8, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2               7
  CLUS_2             3              14
  CLUS_3             0               7
  CLUS_4             0              12
  CLUS_5             0               6
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(107) Variable = CSGALNACT2 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT2 MUTATED        1      2      0      0      0
  CSGALNACT2 WILD-TYPE     20     17      8      8      6
D107V1, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  1                   20
  CLUS_2                  2                   17
  CLUS_3                  0                    8
  CLUS_4                  0                    8
  CLUS_5                  0                    6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT2 MUTATED        1      0      0      0      2
  CSGALNACT2 WILD-TYPE     12      8     14     14      5
D107V2, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  1                   12
  CLUS_2                  0                    8
  CLUS_3                  0                   14
  CLUS_4                  0                   14
  CLUS_5                  2                    5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        1      0      0      2
  CSGALNACT2 WILD-TYPE     16      8     14     14
D107V3, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  1                   16
  CLUS_2                  0                    8
  CLUS_3                  0                   14
  CLUS_4                  2                   14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT2 MUTATED        1      0      0      2
  CSGALNACT2 WILD-TYPE     15     16      5     16
D107V4, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  1                   15
  CLUS_2                  0                   16
  CLUS_3                  0                    5
  CLUS_4                  2                   16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        1      0      2
  CSGALNACT2 WILD-TYPE     25     12     16
D107V5, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  1                   25
  CLUS_2                  0                   12
  CLUS_3                  2                   16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT2 MUTATED        0      2      0      1      0
  CSGALNACT2 WILD-TYPE     13     17      8     13      2
D107V6, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                   13
  CLUS_2                  2                   17
  CLUS_3                  0                    8
  CLUS_4                  1                   13
  CLUS_5                  0                    2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT2 MUTATED        1      0      2
  CSGALNACT2 WILD-TYPE     26     13     14
D107V7, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  1                   26
  CLUS_2                  0                   13
  CLUS_3                  2                   14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSGALNACT2 MUTATED        0      2      0      1      0      0
  CSGALNACT2 WILD-TYPE      9     15      7     11      6      5
D107V8, multiclass
        clus
vv       CSGALNACT2 MUTATED CSGALNACT2 WILD-TYPE
  CLUS_1                  0                    9
  CLUS_2                  2                   15
  CLUS_3                  0                    7
  CLUS_4                  1                   11
  CLUS_5                  0                    6
  CLUS_6                  0                    5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(108) Variable = UQCRFS1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UQCRFS1 MUTATED        1      1      1      0      1
  UQCRFS1 WILD-TYPE     20     18      7      8      5
D108V1, multiclass
        clus
vv       UQCRFS1 MUTATED UQCRFS1 WILD-TYPE
  CLUS_1               1                20
  CLUS_2               1                18
  CLUS_3               1                 7
  CLUS_4               0                 8
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UQCRFS1 MUTATED        2      1      2      0      0
  UQCRFS1 WILD-TYPE     11      7     12     14      7
D108V2, multiclass
        clus
vv       UQCRFS1 MUTATED UQCRFS1 WILD-TYPE
  CLUS_1               2                11
  CLUS_2               1                 7
  CLUS_3               2                12
  CLUS_4               0                14
  CLUS_5               0                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UQCRFS1 MUTATED        1      1      1      1
  UQCRFS1 WILD-TYPE     16      7     13     15
D108V3, multiclass
        clus
vv       UQCRFS1 MUTATED UQCRFS1 WILD-TYPE
  CLUS_1               1                16
  CLUS_2               1                 7
  CLUS_3               1                13
  CLUS_4               1                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UQCRFS1 MUTATED        1      2      0      1
  UQCRFS1 WILD-TYPE     15     14      5     17
D108V4, multiclass
        clus
vv       UQCRFS1 MUTATED UQCRFS1 WILD-TYPE
  CLUS_1               1                15
  CLUS_2               2                14
  CLUS_3               0                 5
  CLUS_4               1                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  UQCRFS1 MUTATED        4      0      1
  UQCRFS1 WILD-TYPE     22     12     17
D108V5, multiclass
        clus
vv       UQCRFS1 MUTATED UQCRFS1 WILD-TYPE
  CLUS_1               4                22
  CLUS_2               0                12
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UQCRFS1 MUTATED        3      0      1      1      0
  UQCRFS1 WILD-TYPE     10     19      7     13      2
D108V6, multiclass
        clus
vv       UQCRFS1 MUTATED UQCRFS1 WILD-TYPE
  CLUS_1               3                10
  CLUS_2               0                19
  CLUS_3               1                 7
  CLUS_4               1                13
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  UQCRFS1 MUTATED        4      0      1
  UQCRFS1 WILD-TYPE     23     13     15
D108V7, multiclass
        clus
vv       UQCRFS1 MUTATED UQCRFS1 WILD-TYPE
  CLUS_1               4                23
  CLUS_2               0                13
  CLUS_3               1                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UQCRFS1 MUTATED        3      0      0      1      0      1
  UQCRFS1 WILD-TYPE      6     17      7     11      6      4
D108V8, multiclass
        clus
vv       UQCRFS1 MUTATED UQCRFS1 WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               0                17
  CLUS_3               0                 7
  CLUS_4               1                11
  CLUS_5               0                 6
  CLUS_6               1                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(109) Variable = PDCD6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDCD6 MUTATED        0      1      1      1      0
  PDCD6 WILD-TYPE     21     18      7      7      6
D109V1, multiclass
        clus
vv       PDCD6 MUTATED PDCD6 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             1               7
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDCD6 MUTATED        1      0      0      1      1
  PDCD6 WILD-TYPE     12      8     14     13      6
D109V2, multiclass
        clus
vv       PDCD6 MUTATED PDCD6 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0               8
  CLUS_3             0              14
  CLUS_4             1              13
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD6 MUTATED        0      0      1      1
  PDCD6 WILD-TYPE     17      8     13     15
D109V3, multiclass
[1] "Remove cluster labels:" "PDCD6 MUTATED"         
clus
  PDCD6 MUTATED PDCD6 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JP      TCGA-OR-A5JQ 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-PK-A5HB 
"PDCD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD6 MUTATED        0      0      0      2
  PDCD6 WILD-TYPE     16     16      5     16
D109V4, multiclass
[1] "Remove cluster labels:" "PDCD6 MUTATED"         
clus
  PDCD6 MUTATED PDCD6 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JP      TCGA-OR-A5JQ 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" "PDCD6 WILD-TYPE" 
     TCGA-PK-A5HB 
"PDCD6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDCD6 MUTATED        2      0      1
  PDCD6 WILD-TYPE     24     12     17
D109V5, multiclass
        clus
vv       PDCD6 MUTATED PDCD6 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              12
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDCD6 MUTATED        1      1      1      0      0
  PDCD6 WILD-TYPE     12     18      7     14      2
D109V6, multiclass
        clus
vv       PDCD6 MUTATED PDCD6 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             0              14
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDCD6 MUTATED        2      0      1
  PDCD6 WILD-TYPE     25     13     15
D109V7, multiclass
        clus
vv       PDCD6 MUTATED PDCD6 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             0              13
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDCD6 MUTATED        1      1      1      0      0      0
  PDCD6 WILD-TYPE      8     16      6     12      6      5
D109V8, multiclass
        clus
vv       PDCD6 MUTATED PDCD6 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             1              16
  CLUS_3             1               6
  CLUS_4             0              12
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(110) Variable = PTX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTX4 MUTATED        2      0      0      1      0
  PTX4 WILD-TYPE     19     19      8      7      6
D110V1, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            2             19
  CLUS_2            0             19
  CLUS_3            0              8
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTX4 MUTATED        1      0      1      1      0
  PTX4 WILD-TYPE     12      8     13     13      7
D110V2, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            0              8
  CLUS_3            1             13
  CLUS_4            1             13
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTX4 MUTATED        2      0      1      0
  PTX4 WILD-TYPE     15      8     13     16
D110V3, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0              8
  CLUS_3            1             13
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTX4 MUTATED        1      1      1      0
  PTX4 WILD-TYPE     15     15      4     18
D110V4, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             15
  CLUS_3            1              4
  CLUS_4            0             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTX4 MUTATED        2      1      0
  PTX4 WILD-TYPE     24     11     18
D110V5, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             11
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTX4 MUTATED        1      1      0      1      0
  PTX4 WILD-TYPE     12     18      8     13      2
D110V6, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            1             13
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTX4 MUTATED        2      1      0
  PTX4 WILD-TYPE     25     12     16
D110V7, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            2             25
  CLUS_2            1             12
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTX4 MUTATED        1      0      0      1      1      0
  PTX4 WILD-TYPE      8     17      7     11      5      5
D110V8, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            0             17
  CLUS_3            0              7
  CLUS_4            1             11
  CLUS_5            1              5
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(111) Variable = SGK223 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK223 MUTATED        1      2      0      0      0
  SGK223 WILD-TYPE     20     17      8      8      6
D111V1, multiclass
        clus
vv       SGK223 MUTATED SGK223 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              2               17
  CLUS_3              0                8
  CLUS_4              0                8
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK223 MUTATED        0      1      0      1      0
  SGK223 WILD-TYPE     13      7     14     13      7
D111V2, multiclass
[1] "Remove cluster labels:" "SGK223 MUTATED"        
clus
  SGK223 MUTATED SGK223 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J4       TCGA-OR-A5J5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK223 MUTATED        0      0      2      0
  SGK223 WILD-TYPE     17      8     12     16
D111V3, multiclass
[1] "Remove cluster labels:" "SGK223 MUTATED"        
clus
  SGK223 MUTATED SGK223 WILD-TYPE 
               2               53 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J5       TCGA-OR-A5J6 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA       TCGA-OR-A5JB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF       TCGA-OR-A5JI 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP       TCGA-OR-A5JQ 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV       TCGA-OR-A5JW 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2       TCGA-OR-A5K5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KX 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4       TCGA-OR-A5L5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA       TCGA-OR-A5LB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-PK-A5HB 
"SGK223 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK223 MUTATED        0      1      0      1
  SGK223 WILD-TYPE     16     15      5     17
D111V4, multiclass
[1] "Remove cluster labels:" "SGK223 MUTATED"        
clus
  SGK223 MUTATED SGK223 WILD-TYPE 
               2               53 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J5       TCGA-OR-A5J6 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA       TCGA-OR-A5JB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF       TCGA-OR-A5JI 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP       TCGA-OR-A5JQ 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV       TCGA-OR-A5JW 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2       TCGA-OR-A5K5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KX 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4       TCGA-OR-A5L5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA       TCGA-OR-A5LB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-PK-A5HB 
"SGK223 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SGK223 MUTATED        2      0      0
  SGK223 WILD-TYPE     24     12     18
D111V5, multiclass
[1] "Remove cluster labels:" "SGK223 MUTATED"        
clus
  SGK223 MUTATED SGK223 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J4       TCGA-OR-A5J5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK223 MUTATED        2      0      0      0      0
  SGK223 WILD-TYPE     11     19      8     14      2
D111V6, multiclass
[1] "Remove cluster labels:" "SGK223 MUTATED"        
clus
  SGK223 MUTATED SGK223 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J4       TCGA-OR-A5J5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SGK223 MUTATED        2      0      0
  SGK223 WILD-TYPE     25     13     16
D111V7, multiclass
[1] "Remove cluster labels:" "SGK223 MUTATED"        
clus
  SGK223 MUTATED SGK223 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J4       TCGA-OR-A5J5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGK223 MUTATED        1      0      1      0      0      0
  SGK223 WILD-TYPE      8     17      6     12      6      5
D111V8, multiclass
[1] "Remove cluster labels:" "SGK223 MUTATED"        
clus
  SGK223 MUTATED SGK223 WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J4       TCGA-OR-A5J5 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9       TCGA-OR-A5LA 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"SGK223 WILD-TYPE" "SGK223 WILD-TYPE" 

Clustering(112) Variable = POLRMT MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLRMT MUTATED        1      1      0      1      1
  POLRMT WILD-TYPE     20     18      8      7      5
D112V1, multiclass
        clus
vv       POLRMT MUTATED POLRMT WILD-TYPE
  CLUS_1              1               20
  CLUS_2              1               18
  CLUS_3              0                8
  CLUS_4              1                7
  CLUS_5              1                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLRMT MUTATED        0      0      0      2      2
  POLRMT WILD-TYPE     13      8     14     12      5
D112V2, multiclass
        clus
vv       POLRMT MUTATED POLRMT WILD-TYPE
  CLUS_1              0               13
  CLUS_2              0                8
  CLUS_3              0               14
  CLUS_4              2               12
  CLUS_5              2                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLRMT MUTATED        0      0      2      2
  POLRMT WILD-TYPE     17      8     12     14
D112V3, multiclass
        clus
vv       POLRMT MUTATED POLRMT WILD-TYPE
  CLUS_1              0               17
  CLUS_2              0                8
  CLUS_3              2               12
  CLUS_4              2               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLRMT MUTATED        0      0      0      4
  POLRMT WILD-TYPE     16     16      5     14
D112V4, multiclass
        clus
vv       POLRMT MUTATED POLRMT WILD-TYPE
  CLUS_1              0               16
  CLUS_2              0               16
  CLUS_3              0                5
  CLUS_4              4               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POLRMT MUTATED        1      0      3
  POLRMT WILD-TYPE     25     12     15
D112V5, multiclass
        clus
vv       POLRMT MUTATED POLRMT WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               12
  CLUS_3              3               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLRMT MUTATED        0      3      1      0      0
  POLRMT WILD-TYPE     13     16      7     14      2
D112V6, multiclass
        clus
vv       POLRMT MUTATED POLRMT WILD-TYPE
  CLUS_1              0               13
  CLUS_2              3               16
  CLUS_3              1                7
  CLUS_4              0               14
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  POLRMT MUTATED        1      0      3
  POLRMT WILD-TYPE     26     13     13
D112V7, multiclass
        clus
vv       POLRMT MUTATED POLRMT WILD-TYPE
  CLUS_1              1               26
  CLUS_2              0               13
  CLUS_3              3               13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POLRMT MUTATED        0      3      1      0      0      0
  POLRMT WILD-TYPE      9     14      6     12      6      5
D112V8, multiclass
        clus
vv       POLRMT MUTATED POLRMT WILD-TYPE
  CLUS_1              0                9
  CLUS_2              3               14
  CLUS_3              1                6
  CLUS_4              0               12
  CLUS_5              0                6
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(113) Variable = CACNA1D MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1D MUTATED        2      0      0      1      0
  CACNA1D WILD-TYPE     19     19      8      7      6
D113V1, multiclass
        clus
vv       CACNA1D MUTATED CACNA1D WILD-TYPE
  CLUS_1               2                19
  CLUS_2               0                19
  CLUS_3               0                 8
  CLUS_4               1                 7
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1D MUTATED        1      0      0      1      0
  CACNA1D WILD-TYPE     12      8     14     13      7
D113V2, multiclass
[1] "Remove cluster labels:" "CACNA1D MUTATED"       
clus
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                2                54 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        1      0      0      1
  CACNA1D WILD-TYPE     16      8     14     15
D113V3, multiclass
[1] "Remove cluster labels:" "CACNA1D MUTATED"       
clus
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                2                53 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5        TCGA-OR-A5J7 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI        TCGA-OR-A5JK 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ        TCGA-OR-A5JR 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW        TCGA-OR-A5JX 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4        TCGA-OR-A5K5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO        TCGA-OR-A5KT 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW        TCGA-OR-A5KX 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ        TCGA-OR-A5LK 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG        TCGA-PK-A5H8 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PK-A5HB 
"CACNA1D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CACNA1D MUTATED        1      0      1      0
  CACNA1D WILD-TYPE     15     16      4     18
D113V4, multiclass
[1] "Remove cluster labels:" "CACNA1D MUTATED"       
clus
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                2                53 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5        TCGA-OR-A5J7 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI        TCGA-OR-A5JK 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ        TCGA-OR-A5JR 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW        TCGA-OR-A5JX 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4        TCGA-OR-A5K5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO        TCGA-OR-A5KT 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW        TCGA-OR-A5KX 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ        TCGA-OR-A5LK 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG        TCGA-PK-A5H8 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PK-A5HB 
"CACNA1D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1D MUTATED        2      0      0
  CACNA1D WILD-TYPE     24     12     18
D113V5, multiclass
[1] "Remove cluster labels:" "CACNA1D MUTATED"       
clus
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                2                54 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CACNA1D MUTATED        1      0      1      0      0
  CACNA1D WILD-TYPE     12     19      7     14      2
D113V6, multiclass
[1] "Remove cluster labels:" "CACNA1D MUTATED"       
clus
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                2                54 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CACNA1D MUTATED        2      0      0
  CACNA1D WILD-TYPE     25     13     16
D113V7, multiclass
[1] "Remove cluster labels:" "CACNA1D MUTATED"       
clus
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                2                54 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CACNA1D MUTATED        1      0      1      0      0      0
  CACNA1D WILD-TYPE      8     17      6     12      6      5
D113V8, multiclass
[1] "Remove cluster labels:" "CACNA1D MUTATED"       
clus
  CACNA1D MUTATED CACNA1D WILD-TYPE 
                2                54 
       TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4        TCGA-OR-A5J5 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA        TCGA-OR-A5JB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF        TCGA-OR-A5JI 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2        TCGA-OR-A5K4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LB        TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 
       TCGA-PK-A5H8        TCGA-PK-A5HB 
"CACNA1D WILD-TYPE" "CACNA1D WILD-TYPE" 

Clustering(114) Variable = NF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        3      1      0      3      0
  NF1 WILD-TYPE     18     18      8      5      6
D114V1, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           3            18
  CLUS_2           1            18
  CLUS_3           0             8
  CLUS_4           3             5
  CLUS_5           0             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        2      0      2      2      1
  NF1 WILD-TYPE     11      8     12     12      6
D114V2, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            11
  CLUS_2           0             8
  CLUS_3           2            12
  CLUS_4           2            12
  CLUS_5           1             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        4      0      2      1
  NF1 WILD-TYPE     13      8     12     15
D114V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           4            13
  CLUS_2           0             8
  CLUS_3           2            12
  CLUS_4           1            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        2      2      2      1
  NF1 WILD-TYPE     14     14      3     17
D114V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            14
  CLUS_2           2            14
  CLUS_3           2             3
  CLUS_4           1            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        2      3      2
  NF1 WILD-TYPE     24      9     16
D114V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            24
  CLUS_2           3             9
  CLUS_3           2            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NF1 MUTATED        1      2      1      3      0
  NF1 WILD-TYPE     12     17      7     11      2
D114V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            12
  CLUS_2           2            17
  CLUS_3           1             7
  CLUS_4           3            11
  CLUS_5           0             2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        2      4      1
  NF1 WILD-TYPE     25      9     15
D114V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            25
  CLUS_2           4             9
  CLUS_3           1            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NF1 MUTATED        1      1      0      3      1      1
  NF1 WILD-TYPE      8     16      7      9      5      4
D114V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1             8
  CLUS_2           1            16
  CLUS_3           0             7
  CLUS_4           3             9
  CLUS_5           1             5
  CLUS_6           1             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(115) Variable = RGMB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGMB MUTATED        2      2      2      0      0
  RGMB WILD-TYPE     19     17      6      8      6
D115V1, multiclass
        clus
vv       RGMB MUTATED RGMB WILD-TYPE
  CLUS_1            2             19
  CLUS_2            2             17
  CLUS_3            2              6
  CLUS_4            0              8
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGMB MUTATED        1      0      1      0      0
  RGMB WILD-TYPE     12      8     13     14      7
D115V2, multiclass
[1] "Remove cluster labels:" "RGMB MUTATED"          
clus
  RGMB MUTATED RGMB WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K9 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KW     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGMB MUTATED        1      0      1      0
  RGMB WILD-TYPE     16      8     13     16
D115V3, multiclass
[1] "Remove cluster labels:" "RGMB MUTATED"          
clus
  RGMB MUTATED RGMB WILD-TYPE 
             2             53 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J5 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8     TCGA-OR-A5JA 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD     TCGA-OR-A5JF 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL     TCGA-OR-A5JP 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT     TCGA-OR-A5JV 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY     TCGA-OR-A5K2 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K9     TCGA-OR-A5KO 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP     TCGA-OR-A5LR 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG     TCGA-PK-A5H8 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-PK-A5HB 
"RGMB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGMB MUTATED        1      1      0      0
  RGMB WILD-TYPE     15     15      5     18
D115V4, multiclass
[1] "Remove cluster labels:" "RGMB MUTATED"          
clus
  RGMB MUTATED RGMB WILD-TYPE 
             2             53 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J5 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8     TCGA-OR-A5JA 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD     TCGA-OR-A5JF 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL     TCGA-OR-A5JP 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT     TCGA-OR-A5JV 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY     TCGA-OR-A5K2 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K9     TCGA-OR-A5KO 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV     TCGA-OR-A5KW 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4     TCGA-OR-A5L5 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA     TCGA-OR-A5LB 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ     TCGA-OR-A5LK 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP     TCGA-OR-A5LR 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG     TCGA-PK-A5H8 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-PK-A5HB 
"RGMB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGMB MUTATED        1      1      0
  RGMB WILD-TYPE     25     11     18
D115V5, multiclass
[1] "Remove cluster labels:" "RGMB MUTATED"          
clus
  RGMB MUTATED RGMB WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K9 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KW     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGMB MUTATED        0      1      0      1      0
  RGMB WILD-TYPE     13     18      8     13      2
D115V6, multiclass
[1] "Remove cluster labels:" "RGMB MUTATED"          
clus
  RGMB MUTATED RGMB WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K9 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KW     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RGMB MUTATED        1      1      0
  RGMB WILD-TYPE     26     12     16
D115V7, multiclass
[1] "Remove cluster labels:" "RGMB MUTATED"          
clus
  RGMB MUTATED RGMB WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K9 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KW     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGMB MUTATED        0      1      0      1      0      0
  RGMB WILD-TYPE      9     16      7     11      6      5
D115V8, multiclass
[1] "Remove cluster labels:" "RGMB MUTATED"          
clus
  RGMB MUTATED RGMB WILD-TYPE 
             2             54 
    TCGA-OR-A5J1     TCGA-OR-A5J2     TCGA-OR-A5J3     TCGA-OR-A5J4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5J5     TCGA-OR-A5J6     TCGA-OR-A5J7     TCGA-OR-A5J8 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JA     TCGA-OR-A5JB     TCGA-OR-A5JC     TCGA-OR-A5JD 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JF     TCGA-OR-A5JI     TCGA-OR-A5JK     TCGA-OR-A5JL 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JP     TCGA-OR-A5JQ     TCGA-OR-A5JR     TCGA-OR-A5JT 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5JV     TCGA-OR-A5JW     TCGA-OR-A5JX     TCGA-OR-A5JY 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5K2     TCGA-OR-A5K4     TCGA-OR-A5K5     TCGA-OR-A5K9 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KO     TCGA-OR-A5KT     TCGA-OR-A5KU     TCGA-OR-A5KV 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5KW     TCGA-OR-A5KZ     TCGA-OR-A5L3     TCGA-OR-A5L4 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5L5     TCGA-OR-A5L6     TCGA-OR-A5L9     TCGA-OR-A5LA 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LB     TCGA-OR-A5LC     TCGA-OR-A5LD     TCGA-OR-A5LJ 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LK     TCGA-OR-A5LL     TCGA-OR-A5LO     TCGA-OR-A5LP 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-OR-A5LR     TCGA-P6-A5OF     TCGA-P6-A5OG     TCGA-PA-A5YG 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" "RGMB WILD-TYPE" 
    TCGA-PK-A5H8     TCGA-PK-A5HB 
"RGMB WILD-TYPE" "RGMB WILD-TYPE" 

Clustering(116) Variable = ADAMTS7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTS7 MUTATED        0      3      0      0      1
  ADAMTS7 WILD-TYPE     21     16      8      8      5
D116V1, multiclass
        clus
vv       ADAMTS7 MUTATED ADAMTS7 WILD-TYPE
  CLUS_1               0                21
  CLUS_2               3                16
  CLUS_3               0                 8
  CLUS_4               0                 8
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTS7 MUTATED        0      0      1      2      1
  ADAMTS7 WILD-TYPE     13      8     13     12      6
D116V2, multiclass
        clus
vv       ADAMTS7 MUTATED ADAMTS7 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               0                 8
  CLUS_3               1                13
  CLUS_4               2                12
  CLUS_5               1                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS7 MUTATED        0      1      0      3
  ADAMTS7 WILD-TYPE     17      7     14     13
D116V3, multiclass
        clus
vv       ADAMTS7 MUTATED ADAMTS7 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               1                 7
  CLUS_3               0                14
  CLUS_4               3                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS7 MUTATED        0      1      0      3
  ADAMTS7 WILD-TYPE     16     15      5     15
D116V4, multiclass
        clus
vv       ADAMTS7 MUTATED ADAMTS7 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               1                15
  CLUS_3               0                 5
  CLUS_4               3                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ADAMTS7 MUTATED        0      1      3
  ADAMTS7 WILD-TYPE     26     11     15
D116V5, multiclass
        clus
vv       ADAMTS7 MUTATED ADAMTS7 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                11
  CLUS_3               3                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTS7 MUTATED        0      3      1      0      0
  ADAMTS7 WILD-TYPE     13     16      7     14      2
D116V6, multiclass
        clus
vv       ADAMTS7 MUTATED ADAMTS7 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               3                16
  CLUS_3               1                 7
  CLUS_4               0                14
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ADAMTS7 MUTATED        0      1      3
  ADAMTS7 WILD-TYPE     27     12     13
D116V7, multiclass
        clus
vv       ADAMTS7 MUTATED ADAMTS7 WILD-TYPE
  CLUS_1               0                27
  CLUS_2               1                12
  CLUS_3               3                13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAMTS7 MUTATED        0      3      0      0      0      1
  ADAMTS7 WILD-TYPE      9     14      7     12      6      4
D116V8, multiclass
        clus
vv       ADAMTS7 MUTATED ADAMTS7 WILD-TYPE
  CLUS_1               0                 9
  CLUS_2               3                14
  CLUS_3               0                 7
  CLUS_4               0                12
  CLUS_5               0                 6
  CLUS_6               1                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(117) Variable = CLIC6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIC6 MUTATED        3      2      0      1      0
  CLIC6 WILD-TYPE     18     17      8      7      6
D117V1, multiclass
        clus
vv       CLIC6 MUTATED CLIC6 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             2              17
  CLUS_3             0               8
  CLUS_4             1               7
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIC6 MUTATED        1      1      1      1      0
  CLIC6 WILD-TYPE     12      7     13     13      7
D117V2, multiclass
        clus
vv       CLIC6 MUTATED CLIC6 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1               7
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIC6 MUTATED        2      1      0      1
  CLIC6 WILD-TYPE     15      7     14     15
D117V3, multiclass
        clus
vv       CLIC6 MUTATED CLIC6 WILD-TYPE
  CLUS_1             2              15
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLIC6 MUTATED        2      1      1      0
  CLIC6 WILD-TYPE     14     15      4     18
D117V4, multiclass
        clus
vv       CLIC6 MUTATED CLIC6 WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              15
  CLUS_3             1               4
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIC6 MUTATED        2      2      0
  CLIC6 WILD-TYPE     24     10     18
D117V5, multiclass
        clus
vv       CLIC6 MUTATED CLIC6 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              10
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLIC6 MUTATED        0      1      1      2      0
  CLIC6 WILD-TYPE     13     18      7     12      2
D117V6, multiclass
        clus
vv       CLIC6 MUTATED CLIC6 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLIC6 MUTATED        2      2      0
  CLIC6 WILD-TYPE     25     11     16
D117V7, multiclass
        clus
vv       CLIC6 MUTATED CLIC6 WILD-TYPE
  CLUS_1             2              25
  CLUS_2             2              11
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLIC6 MUTATED        0      1      1      1      1      0
  CLIC6 WILD-TYPE      9     16      6     11      5      5
D117V8, multiclass
        clus
vv       CLIC6 MUTATED CLIC6 WILD-TYPE
  CLUS_1             0               9
  CLUS_2             1              16
  CLUS_3             1               6
  CLUS_4             1              11
  CLUS_5             1               5
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(118) Variable = EMR2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMR2 MUTATED        0      2      1      1      0
  EMR2 WILD-TYPE     21     17      7      7      6
D118V1, multiclass
        clus
vv       EMR2 MUTATED EMR2 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            2             17
  CLUS_3            1              7
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMR2 MUTATED        0      0      3      1      0
  EMR2 WILD-TYPE     13      8     11     13      7
D118V2, multiclass
        clus
vv       EMR2 MUTATED EMR2 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            0              8
  CLUS_3            3             11
  CLUS_4            1             13
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMR2 MUTATED        0      1      1      2
  EMR2 WILD-TYPE     17      7     13     14
D118V3, multiclass
        clus
vv       EMR2 MUTATED EMR2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            2             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMR2 MUTATED        0      2      0      2
  EMR2 WILD-TYPE     16     14      5     16
D118V4, multiclass
        clus
vv       EMR2 MUTATED EMR2 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            2             14
  CLUS_3            0              5
  CLUS_4            2             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMR2 MUTATED        1      1      2
  EMR2 WILD-TYPE     25     11     16
D118V5, multiclass
        clus
vv       EMR2 MUTATED EMR2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             11
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMR2 MUTATED        0      2      0      1      1
  EMR2 WILD-TYPE     13     17      8     13      1
D118V6, multiclass
        clus
vv       EMR2 MUTATED EMR2 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            1             13
  CLUS_5            1              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMR2 MUTATED        1      1      2
  EMR2 WILD-TYPE     26     12     14
D118V7, multiclass
        clus
vv       EMR2 MUTATED EMR2 WILD-TYPE
  CLUS_1            1             26
  CLUS_2            1             12
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EMR2 MUTATED        0      2      0      1      1      0
  EMR2 WILD-TYPE      9     15      7     11      5      5
D118V8, multiclass
        clus
vv       EMR2 MUTATED EMR2 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            2             15
  CLUS_3            0              7
  CLUS_4            1             11
  CLUS_5            1              5
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(119) Variable = PCDHB13 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCDHB13 MUTATED        1      1      1      1      1
  PCDHB13 WILD-TYPE     20     18      7      7      5
D119V1, multiclass
        clus
vv       PCDHB13 MUTATED PCDHB13 WILD-TYPE
  CLUS_1               1                20
  CLUS_2               1                18
  CLUS_3               1                 7
  CLUS_4               1                 7
  CLUS_5               1                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCDHB13 MUTATED        0      1      3      0      0
  PCDHB13 WILD-TYPE     13      7     11     14      7
D119V2, multiclass
        clus
vv       PCDHB13 MUTATED PCDHB13 WILD-TYPE
  CLUS_1               0                13
  CLUS_2               1                 7
  CLUS_3               3                11
  CLUS_4               0                14
  CLUS_5               0                 7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHB13 MUTATED        0      0      3      1
  PCDHB13 WILD-TYPE     17      8     11     15
D119V3, multiclass
        clus
vv       PCDHB13 MUTATED PCDHB13 WILD-TYPE
  CLUS_1               0                17
  CLUS_2               0                 8
  CLUS_3               3                11
  CLUS_4               1                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDHB13 MUTATED        0      3      0      1
  PCDHB13 WILD-TYPE     16     13      5     17
D119V4, multiclass
        clus
vv       PCDHB13 MUTATED PCDHB13 WILD-TYPE
  CLUS_1               0                16
  CLUS_2               3                13
  CLUS_3               0                 5
  CLUS_4               1                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHB13 MUTATED        3      0      1
  PCDHB13 WILD-TYPE     23     12     17
D119V5, multiclass
        clus
vv       PCDHB13 MUTATED PCDHB13 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               0                12
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCDHB13 MUTATED        3      0      1      0      0
  PCDHB13 WILD-TYPE     10     19      7     14      2
D119V6, multiclass
        clus
vv       PCDHB13 MUTATED PCDHB13 WILD-TYPE
  CLUS_1               3                10
  CLUS_2               0                19
  CLUS_3               1                 7
  CLUS_4               0                14
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PCDHB13 MUTATED        3      0      1
  PCDHB13 WILD-TYPE     24     13     15
D119V7, multiclass
        clus
vv       PCDHB13 MUTATED PCDHB13 WILD-TYPE
  CLUS_1               3                24
  CLUS_2               0                13
  CLUS_3               1                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCDHB13 MUTATED        3      0      0      0      0      1
  PCDHB13 WILD-TYPE      6     17      7     12      6      4
D119V8, multiclass
        clus
vv       PCDHB13 MUTATED PCDHB13 WILD-TYPE
  CLUS_1               3                 6
  CLUS_2               0                17
  CLUS_3               0                 7
  CLUS_4               0                12
  CLUS_5               0                 6
  CLUS_6               1                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(120) Variable = MTFMT MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTFMT MUTATED        2      1      0      0      0
  MTFMT WILD-TYPE     19     18      8      8      6
D120V1, multiclass
        clus
vv       MTFMT MUTATED MTFMT WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTFMT MUTATED        1      0      0      1      0
  MTFMT WILD-TYPE     12      8     14     13      7
D120V2, multiclass
[1] "Remove cluster labels:" "MTFMT MUTATED"         
clus
  MTFMT MUTATED MTFMT WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTFMT MUTATED        2      0      0      0
  MTFMT WILD-TYPE     15      8     14     16
D120V3, multiclass
[1] "Remove cluster labels:" "MTFMT MUTATED"         
clus
  MTFMT MUTATED MTFMT WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF      TCGA-OR-A5JI 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ      TCGA-OR-A5JR 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PK-A5HB 
"MTFMT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTFMT MUTATED        1      0      1      0
  MTFMT WILD-TYPE     15     16      4     18
D120V4, multiclass
[1] "Remove cluster labels:" "MTFMT MUTATED"         
clus
  MTFMT MUTATED MTFMT WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF      TCGA-OR-A5JI 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ      TCGA-OR-A5JR 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PK-A5HB 
"MTFMT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTFMT MUTATED        1      1      0
  MTFMT WILD-TYPE     25     11     18
D120V5, multiclass
[1] "Remove cluster labels:" "MTFMT MUTATED"         
clus
  MTFMT MUTATED MTFMT WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTFMT MUTATED        0      1      0      1      0
  MTFMT WILD-TYPE     13     18      8     13      2
D120V6, multiclass
[1] "Remove cluster labels:" "MTFMT MUTATED"         
clus
  MTFMT MUTATED MTFMT WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTFMT MUTATED        1      1      0
  MTFMT WILD-TYPE     26     12     16
D120V7, multiclass
[1] "Remove cluster labels:" "MTFMT MUTATED"         
clus
  MTFMT MUTATED MTFMT WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTFMT MUTATED        0      0      0      1      1      0
  MTFMT WILD-TYPE      9     17      7     11      5      5
D120V8, multiclass
[1] "Remove cluster labels:" "MTFMT MUTATED"         
clus
  MTFMT MUTATED MTFMT WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"MTFMT WILD-TYPE" "MTFMT WILD-TYPE" 

Clustering(121) Variable = SPTAN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTAN1 MUTATED        1      0      0      1      1
  SPTAN1 WILD-TYPE     20     19      8      7      5
D121V1, multiclass
        clus
vv       SPTAN1 MUTATED SPTAN1 WILD-TYPE
  CLUS_1              1               20
  CLUS_2              0               19
  CLUS_3              0                8
  CLUS_4              1                7
  CLUS_5              1                5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTAN1 MUTATED        0      0      1      0      0
  SPTAN1 WILD-TYPE     13      8     13     14      7
D121V2, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               55 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L3       TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L9       TCGA-OR-A5LA       TCGA-OR-A5LB       TCGA-OR-A5LC 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK       TCGA-OR-A5LL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR       TCGA-P6-A5OF 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        0      0      1      0
  SPTAN1 WILD-TYPE     17      8     13     16
D121V3, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J5 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LA       TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LJ       TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LP       TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-PA-A5YG       TCGA-PK-A5H8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTAN1 MUTATED        0      1      0      0
  SPTAN1 WILD-TYPE     16     15      5     18
D121V4, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J5 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JP 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5L9 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LA       TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LJ       TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LP       TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-PA-A5YG       TCGA-PK-A5H8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      1      0
  SPTAN1 WILD-TYPE     26     11     18
D121V5, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               55 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L3       TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L9       TCGA-OR-A5LA       TCGA-OR-A5LB       TCGA-OR-A5LC 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK       TCGA-OR-A5LL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR       TCGA-P6-A5OF 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTAN1 MUTATED        0      0      0      1      0
  SPTAN1 WILD-TYPE     13     19      8     13      2
D121V6, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               55 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L3       TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L9       TCGA-OR-A5LA       TCGA-OR-A5LB       TCGA-OR-A5LC 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK       TCGA-OR-A5LL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR       TCGA-P6-A5OF 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPTAN1 MUTATED        0      1      0
  SPTAN1 WILD-TYPE     27     12     16
D121V7, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               55 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L3       TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L9       TCGA-OR-A5LA       TCGA-OR-A5LB       TCGA-OR-A5LC 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK       TCGA-OR-A5LL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR       TCGA-P6-A5OF 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPTAN1 MUTATED        0      0      0      1      0      0
  SPTAN1 WILD-TYPE      9     17      7     11      6      5
D121V8, multiclass
[1] "Remove cluster labels:" "SPTAN1 MUTATED"        
clus
  SPTAN1 MUTATED SPTAN1 WILD-TYPE 
               1               55 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JP       TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5JV       TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K2       TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5K9       TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5KV       TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L3       TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5L9       TCGA-OR-A5LA       TCGA-OR-A5LB       TCGA-OR-A5LC 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK       TCGA-OR-A5LL 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR       TCGA-P6-A5OF 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 
      TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" "SPTAN1 WILD-TYPE" 

Clustering(122) Variable = HLA-A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        2      1      0      0      0
  HLA-A WILD-TYPE     19     18      8      8      6
D122V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              19
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        1      0      1      1      0
  HLA-A WILD-TYPE     12      8     13     13      7
D122V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      1      0      1
  HLA-A WILD-TYPE     16      7     14     15
D122V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             1              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      1      1      0
  HLA-A WILD-TYPE     15     15      4     18
D122V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              15
  CLUS_2             1              15
  CLUS_3             1               4
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        2      0      1
  HLA-A WILD-TYPE     24     12     17
D122V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              12
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        1      0      1      1      0
  HLA-A WILD-TYPE     12     19      7     13      2
D122V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        2      0      1
  HLA-A WILD-TYPE     25     13     15
D122V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              25
  CLUS_2             0              13
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-A MUTATED        0      0      1      1      0      1
  HLA-A WILD-TYPE      9     17      6     11      6      4
D122V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0               9
  CLUS_2             0              17
  CLUS_3             1               6
  CLUS_4             1              11
  CLUS_5             0               6
  CLUS_6             1               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(123) Variable = ASB16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB16 MUTATED        1      2      1      1      1
  ASB16 WILD-TYPE     20     17      7      7      5
D123V1, multiclass
        clus
vv       ASB16 MUTATED ASB16 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             2              17
  CLUS_3             1               7
  CLUS_4             1               7
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB16 MUTATED        1      0      1      1      1
  ASB16 WILD-TYPE     12      8     13     13      6
D123V2, multiclass
        clus
vv       ASB16 MUTATED ASB16 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             1              13
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB16 MUTATED        1      1      0      2
  ASB16 WILD-TYPE     16      7     14     14
D123V3, multiclass
        clus
vv       ASB16 MUTATED ASB16 WILD-TYPE
  CLUS_1             1              16
  CLUS_2             1               7
  CLUS_3             0              14
  CLUS_4             2              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB16 MUTATED        1      2      0      1
  ASB16 WILD-TYPE     15     14      5     17
D123V4, multiclass
        clus
vv       ASB16 MUTATED ASB16 WILD-TYPE
  CLUS_1             1              15
  CLUS_2             2              14
  CLUS_3             0               5
  CLUS_4             1              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB16 MUTATED        3      0      1
  ASB16 WILD-TYPE     23     12     17
D123V5, multiclass
        clus
vv       ASB16 MUTATED ASB16 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             0              12
  CLUS_3             1              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB16 MUTATED        2      1      0      1      0
  ASB16 WILD-TYPE     11     18      8     13      2
D123V6, multiclass
        clus
vv       ASB16 MUTATED ASB16 WILD-TYPE
  CLUS_1             2              11
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB16 MUTATED        3      0      1
  ASB16 WILD-TYPE     24     13     15
D123V7, multiclass
        clus
vv       ASB16 MUTATED ASB16 WILD-TYPE
  CLUS_1             3              24
  CLUS_2             0              13
  CLUS_3             1              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASB16 MUTATED        1      1      1      1      0      0
  ASB16 WILD-TYPE      8     16      6     11      6      5
D123V8, multiclass
        clus
vv       ASB16 MUTATED ASB16 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             1              16
  CLUS_3             1               6
  CLUS_4             1              11
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(124) Variable = GPRIN2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRIN2 MUTATED        2      3      2      2      0
  GPRIN2 WILD-TYPE     19     16      6      6      6
D124V1, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              2               19
  CLUS_2              3               16
  CLUS_3              2                6
  CLUS_4              2                6
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRIN2 MUTATED        1      0      4      1      1
  GPRIN2 WILD-TYPE     12      8     10     13      6
D124V2, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              0                8
  CLUS_3              4               10
  CLUS_4              1               13
  CLUS_5              1                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN2 MUTATED        1      1      3      2
  GPRIN2 WILD-TYPE     16      7     11     14
D124V3, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1                7
  CLUS_3              3               11
  CLUS_4              2               14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPRIN2 MUTATED        1      4      0      2
  GPRIN2 WILD-TYPE     15     12      5     16
D124V4, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              4               12
  CLUS_3              0                5
  CLUS_4              2               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRIN2 MUTATED        2      2      3
  GPRIN2 WILD-TYPE     24     10     15
D124V5, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               10
  CLUS_3              3               15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPRIN2 MUTATED        1      4      1      1      0
  GPRIN2 WILD-TYPE     12     15      7     13      2
D124V6, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              4               15
  CLUS_3              1                7
  CLUS_4              1               13
  CLUS_5              0                2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPRIN2 MUTATED        2      3      2
  GPRIN2 WILD-TYPE     25     10     14
D124V7, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              2               25
  CLUS_2              3               10
  CLUS_3              2               14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPRIN2 MUTATED        1      4      0      1      0      1
  GPRIN2 WILD-TYPE      8     13      7     11      6      4
D124V8, multiclass
        clus
vv       GPRIN2 MUTATED GPRIN2 WILD-TYPE
  CLUS_1              1                8
  CLUS_2              4               13
  CLUS_3              0                7
  CLUS_4              1               11
  CLUS_5              0                6
  CLUS_6              1                4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(125) Variable = HNRNPCL1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPCL1 MUTATED        2      0      0      0      1
  HNRNPCL1 WILD-TYPE     19     19      8      8      5
D125V1, multiclass
        clus
vv       HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE
  CLUS_1                2                 19
  CLUS_2                0                 19
  CLUS_3                0                  8
  CLUS_4                0                  8
  CLUS_5                1                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPCL1 MUTATED        1      0      0      1      0
  HNRNPCL1 WILD-TYPE     12      8     14     13      7
D125V2, multiclass
[1] "Remove cluster labels:" "HNRNPCL1 MUTATED"      
clus
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 2                 54 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5JA 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JI         TCGA-OR-A5JK 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JT         TCGA-OR-A5JV 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K8 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LJ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LO         TCGA-OR-A5LP 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-P6-A5OF         TCGA-P6-A5OG 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H8         TCGA-PK-A5HB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPCL1 MUTATED        1      0      0      1
  HNRNPCL1 WILD-TYPE     16      8     14     15
D125V3, multiclass
[1] "Remove cluster labels:" "HNRNPCL1 MUTATED"      
clus
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 2                 53 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5JA         TCGA-OR-A5JB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JF 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JK         TCGA-OR-A5JL 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5K4 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K8         TCGA-OR-A5K9 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L9 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LJ         TCGA-OR-A5LL 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-P6-A5OF         TCGA-P6-A5OG         TCGA-PA-A5YG 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-PK-A5H8         TCGA-PK-A5HB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNRNPCL1 MUTATED        1      0      0      1
  HNRNPCL1 WILD-TYPE     15     16      5     17
D125V4, multiclass
[1] "Remove cluster labels:" "HNRNPCL1 MUTATED"      
clus
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 2                 53 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5JA         TCGA-OR-A5JB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JF 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JK         TCGA-OR-A5JL 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5K4 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K8         TCGA-OR-A5K9 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L9 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LJ         TCGA-OR-A5LL 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-P6-A5OF         TCGA-P6-A5OG         TCGA-PA-A5YG 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-PK-A5H8         TCGA-PK-A5HB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HNRNPCL1 MUTATED        1      0      1
  HNRNPCL1 WILD-TYPE     25     12     17
D125V5, multiclass
[1] "Remove cluster labels:" "HNRNPCL1 MUTATED"      
clus
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 2                 54 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5JA 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JI         TCGA-OR-A5JK 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JT         TCGA-OR-A5JV 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K8 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LJ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LO         TCGA-OR-A5LP 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-P6-A5OF         TCGA-P6-A5OG 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H8         TCGA-PK-A5HB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNRNPCL1 MUTATED        0      1      0      1      0
  HNRNPCL1 WILD-TYPE     13     18      8     13      2
D125V6, multiclass
[1] "Remove cluster labels:" "HNRNPCL1 MUTATED"      
clus
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 2                 54 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5JA 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JI         TCGA-OR-A5JK 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JT         TCGA-OR-A5JV 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K8 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LJ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LO         TCGA-OR-A5LP 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-P6-A5OF         TCGA-P6-A5OG 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H8         TCGA-PK-A5HB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HNRNPCL1 MUTATED        1      0      1
  HNRNPCL1 WILD-TYPE     26     13     15
D125V7, multiclass
[1] "Remove cluster labels:" "HNRNPCL1 MUTATED"      
clus
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 2                 54 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5JA 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JI         TCGA-OR-A5JK 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JT         TCGA-OR-A5JV 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K8 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LJ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LO         TCGA-OR-A5LP 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-P6-A5OF         TCGA-P6-A5OG 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H8         TCGA-PK-A5HB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HNRNPCL1 MUTATED        0      1      0      1      0      0
  HNRNPCL1 WILD-TYPE      9     16      7     11      6      5
D125V8, multiclass
[1] "Remove cluster labels:" "HNRNPCL1 MUTATED"      
clus
  HNRNPCL1 MUTATED HNRNPCL1 WILD-TYPE 
                 2                 54 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5JA 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JI         TCGA-OR-A5JK 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JT         TCGA-OR-A5JV 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K8 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LJ 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LO         TCGA-OR-A5LP 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-P6-A5OF         TCGA-P6-A5OG 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H8         TCGA-PK-A5HB 
"HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" "HNRNPCL1 WILD-TYPE" 

Clustering(126) Variable = BTNL9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL9 MUTATED        1      1      0      2      0
  BTNL9 WILD-TYPE     20     18      8      6      6
D126V1, multiclass
        clus
vv       BTNL9 MUTATED BTNL9 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             2               6
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL9 MUTATED        0      0      3      0      0
  BTNL9 WILD-TYPE     13      8     11     14      7
D126V2, multiclass
        clus
vv       BTNL9 MUTATED BTNL9 WILD-TYPE
  CLUS_1             0              13
  CLUS_2             0               8
  CLUS_3             3              11
  CLUS_4             0              14
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL9 MUTATED        0      1      2      0
  BTNL9 WILD-TYPE     17      7     12     16
D126V3, multiclass
        clus
vv       BTNL9 MUTATED BTNL9 WILD-TYPE
  CLUS_1             0              17
  CLUS_2             1               7
  CLUS_3             2              12
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL9 MUTATED        0      3      0      0
  BTNL9 WILD-TYPE     16     13      5     18
D126V4, multiclass
        clus
vv       BTNL9 MUTATED BTNL9 WILD-TYPE
  CLUS_1             0              16
  CLUS_2             3              13
  CLUS_3             0               5
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL9 MUTATED        1      2      0
  BTNL9 WILD-TYPE     25     10     18
D126V5, multiclass
        clus
vv       BTNL9 MUTATED BTNL9 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              10
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL9 MUTATED        1      1      0      1      0
  BTNL9 WILD-TYPE     12     18      8     13      2
D126V6, multiclass
        clus
vv       BTNL9 MUTATED BTNL9 WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             1              13
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL9 MUTATED        1      2      0
  BTNL9 WILD-TYPE     26     11     16
D126V7, multiclass
        clus
vv       BTNL9 MUTATED BTNL9 WILD-TYPE
  CLUS_1             1              26
  CLUS_2             2              11
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTNL9 MUTATED        1      1      0      1      0      0
  BTNL9 WILD-TYPE      8     16      7     11      6      5
D126V8, multiclass
        clus
vv       BTNL9 MUTATED BTNL9 WILD-TYPE
  CLUS_1             1               8
  CLUS_2             1              16
  CLUS_3             0               7
  CLUS_4             1              11
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(127) Variable = KCNJ11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ11 MUTATED        0      1      3      0      0
  KCNJ11 WILD-TYPE     21     18      5      8      6
D127V1, multiclass
        clus
vv       KCNJ11 MUTATED KCNJ11 WILD-TYPE
  CLUS_1              0               21
  CLUS_2              1               18
  CLUS_3              3                5
  CLUS_4              0                8
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ11 MUTATED        1      1      2      0      0
  KCNJ11 WILD-TYPE     12      7     12     14      7
D127V2, multiclass
        clus
vv       KCNJ11 MUTATED KCNJ11 WILD-TYPE
  CLUS_1              1               12
  CLUS_2              1                7
  CLUS_3              2               12
  CLUS_4              0               14
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNJ11 MUTATED        1      1      2      0
  KCNJ11 WILD-TYPE     16      7     12     16
D127V3, multiclass
        clus
vv       KCNJ11 MUTATED KCNJ11 WILD-TYPE
  CLUS_1              1               16
  CLUS_2              1                7
  CLUS_3              2               12
  CLUS_4              0               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNJ11 MUTATED        1      3      0      0
  KCNJ11 WILD-TYPE     15     13      5     18
D127V4, multiclass
        clus
vv       KCNJ11 MUTATED KCNJ11 WILD-TYPE
  CLUS_1              1               15
  CLUS_2              3               13
  CLUS_3              0                5
  CLUS_4              0               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNJ11 MUTATED        4      0      0
  KCNJ11 WILD-TYPE     22     12     18
D127V5, multiclass
        clus
vv       KCNJ11 MUTATED KCNJ11 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              0               12
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ11 MUTATED        2      0      0      1      1
  KCNJ11 WILD-TYPE     11     19      8     13      1
D127V6, multiclass
        clus
vv       KCNJ11 MUTATED KCNJ11 WILD-TYPE
  CLUS_1              2               11
  CLUS_2              0               19
  CLUS_3              0                8
  CLUS_4              1               13
  CLUS_5              1                1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNJ11 MUTATED        4      0      0
  KCNJ11 WILD-TYPE     23     13     16
D127V7, multiclass
        clus
vv       KCNJ11 MUTATED KCNJ11 WILD-TYPE
  CLUS_1              4               23
  CLUS_2              0               13
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNJ11 MUTATED        2      0      0      1      1      0
  KCNJ11 WILD-TYPE      7     17      7     11      5      5
D127V8, multiclass
        clus
vv       KCNJ11 MUTATED KCNJ11 WILD-TYPE
  CLUS_1              2                7
  CLUS_2              0               17
  CLUS_3              0                7
  CLUS_4              1               11
  CLUS_5              1                5
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(128) Variable = JMJD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JMJD4 MUTATED        1      1      1      0      0
  JMJD4 WILD-TYPE     20     18      7      8      6
D128V1, multiclass
        clus
vv       JMJD4 MUTATED JMJD4 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             1              18
  CLUS_3             1               7
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JMJD4 MUTATED        2      0      0      0      0
  JMJD4 WILD-TYPE     11      8     14     14      7
D128V2, multiclass
[1] "Remove cluster labels:" "JMJD4 MUTATED"         
clus
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J8      TCGA-OR-A5JA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD4 MUTATED        2      0      0      0
  JMJD4 WILD-TYPE     15      8     14     16
D128V3, multiclass
[1] "Remove cluster labels:" "JMJD4 MUTATED"         
clus
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J8      TCGA-OR-A5JA      TCGA-OR-A5JB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF      TCGA-OR-A5JI 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ      TCGA-OR-A5JR 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-PK-A5HB 
"JMJD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JMJD4 MUTATED        2      0      0      0
  JMJD4 WILD-TYPE     14     16      5     18
D128V4, multiclass
[1] "Remove cluster labels:" "JMJD4 MUTATED"         
clus
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J8      TCGA-OR-A5JA      TCGA-OR-A5JB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF      TCGA-OR-A5JI 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ      TCGA-OR-A5JR 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-PK-A5HB 
"JMJD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  JMJD4 MUTATED        2      0      0
  JMJD4 WILD-TYPE     24     12     18
D128V5, multiclass
[1] "Remove cluster labels:" "JMJD4 MUTATED"         
clus
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J8      TCGA-OR-A5JA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JMJD4 MUTATED        0      0      0      2      0
  JMJD4 WILD-TYPE     13     19      8     12      2
D128V6, multiclass
[1] "Remove cluster labels:" "JMJD4 MUTATED"         
clus
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J8      TCGA-OR-A5JA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  JMJD4 MUTATED        2      0      0
  JMJD4 WILD-TYPE     25     13     16
D128V7, multiclass
[1] "Remove cluster labels:" "JMJD4 MUTATED"         
clus
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J8      TCGA-OR-A5JA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JMJD4 MUTATED        0      0      0      2      0      0
  JMJD4 WILD-TYPE      9     17      7     10      6      5
D128V8, multiclass
[1] "Remove cluster labels:" "JMJD4 MUTATED"         
clus
  JMJD4 MUTATED JMJD4 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J8      TCGA-OR-A5JA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JQ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"JMJD4 WILD-TYPE" "JMJD4 WILD-TYPE" 

Clustering(129) Variable = LRRC4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC4B MUTATED        3      0      2      1      0
  LRRC4B WILD-TYPE     18     19      6      7      6
D129V1, multiclass
        clus
vv       LRRC4B MUTATED LRRC4B WILD-TYPE
  CLUS_1              3               18
  CLUS_2              0               19
  CLUS_3              2                6
  CLUS_4              1                7
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC4B MUTATED        4      0      1      1      0
  LRRC4B WILD-TYPE      9      8     13     13      7
D129V2, multiclass
        clus
vv       LRRC4B MUTATED LRRC4B WILD-TYPE
  CLUS_1              4                9
  CLUS_2              0                8
  CLUS_3              1               13
  CLUS_4              1               13
  CLUS_5              0                7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC4B MUTATED        5      1      0      0
  LRRC4B WILD-TYPE     12      7     14     16
D129V3, multiclass
        clus
vv       LRRC4B MUTATED LRRC4B WILD-TYPE
  CLUS_1              5               12
  CLUS_2              1                7
  CLUS_3              0               14
  CLUS_4              0               16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC4B MUTATED        4      1      1      0
  LRRC4B WILD-TYPE     12     15      4     18
D129V4, multiclass
        clus
vv       LRRC4B MUTATED LRRC4B WILD-TYPE
  CLUS_1              4               12
  CLUS_2              1               15
  CLUS_3              1                4
  CLUS_4              0               18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC4B MUTATED        4      2      0
  LRRC4B WILD-TYPE     22     10     18
D129V5, multiclass
        clus
vv       LRRC4B MUTATED LRRC4B WILD-TYPE
  CLUS_1              4               22
  CLUS_2              2               10
  CLUS_3              0               18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC4B MUTATED        0      1      0      4      1
  LRRC4B WILD-TYPE     13     18      8     10      1
D129V6, multiclass
        clus
vv       LRRC4B MUTATED LRRC4B WILD-TYPE
  CLUS_1              0               13
  CLUS_2              1               18
  CLUS_3              0                8
  CLUS_4              4               10
  CLUS_5              1                1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC4B MUTATED        5      1      0
  LRRC4B WILD-TYPE     22     12     16
D129V7, multiclass
        clus
vv       LRRC4B MUTATED LRRC4B WILD-TYPE
  CLUS_1              5               22
  CLUS_2              1               12
  CLUS_3              0               16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRC4B MUTATED        0      0      0      4      2      0
  LRRC4B WILD-TYPE      9     17      7      8      4      5
D129V8, multiclass
        clus
vv       LRRC4B MUTATED LRRC4B WILD-TYPE
  CLUS_1              0                9
  CLUS_2              0               17
  CLUS_3              0                7
  CLUS_4              4                8
  CLUS_5              2                4
  CLUS_6              0                5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(130) Variable = OPLAH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        2      0      1      0      0
  OPLAH WILD-TYPE     19     19      7      8      6
D130V1, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              19
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        1      1      1      0      0
  OPLAH WILD-TYPE     12      7     13     14      7
D130V2, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              12
  CLUS_2             1               7
  CLUS_3             1              13
  CLUS_4             0              14
  CLUS_5             0               7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        2      0      1      0
  OPLAH WILD-TYPE     15      8     13     16
D130V3, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              15
  CLUS_2             0               8
  CLUS_3             1              13
  CLUS_4             0              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        2      1      0      0
  OPLAH WILD-TYPE     14     15      5     18
D130V4, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              14
  CLUS_2             1              15
  CLUS_3             0               5
  CLUS_4             0              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      1      0
  OPLAH WILD-TYPE     24     11     18
D130V5, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              11
  CLUS_3             0              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        1      0      0      2      0
  OPLAH WILD-TYPE     12     19      8     12      2
D130V6, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0              19
  CLUS_3             0               8
  CLUS_4             2              12
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        2      1      0
  OPLAH WILD-TYPE     25     12     16
D130V7, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              25
  CLUS_2             1              12
  CLUS_3             0              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPLAH MUTATED        1      0      0      1      1      0
  OPLAH WILD-TYPE      8     17      7     11      5      5
D130V8, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             1               8
  CLUS_2             0              17
  CLUS_3             0               7
  CLUS_4             1              11
  CLUS_5             1               5
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(131) Variable = BAGE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAGE2 MUTATED        1      2      0      0      0
  BAGE2 WILD-TYPE     20     17      8      8      6
D131V1, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             2              17
  CLUS_3             0               8
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAGE2 MUTATED        0      0      1      0      1
  BAGE2 WILD-TYPE     13      8     13     14      6
D131V2, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JY      TCGA-OR-A5K2 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAGE2 MUTATED        0      1      0      1
  BAGE2 WILD-TYPE     17      7     14     15
D131V3, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LB 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-PK-A5HB 
"BAGE2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAGE2 MUTATED        0      1      0      1
  BAGE2 WILD-TYPE     16     15      5     17
D131V4, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LB 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-PK-A5HB 
"BAGE2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAGE2 MUTATED        0      0      2
  BAGE2 WILD-TYPE     26     12     16
D131V5, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JY      TCGA-OR-A5K2 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAGE2 MUTATED        1      0      1      0      0
  BAGE2 WILD-TYPE     12     19      7     14      2
D131V6, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JY      TCGA-OR-A5K2 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BAGE2 MUTATED        0      0      2
  BAGE2 WILD-TYPE     27     13     14
D131V7, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JY      TCGA-OR-A5K2 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAGE2 MUTATED        0      0      0      0      0      2
  BAGE2 WILD-TYPE      9     17      7     12      6      3
D131V8, multiclass
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JY      TCGA-OR-A5K2 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 

Clustering(132) Variable = MADCAM1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MADCAM1 MUTATED        0      2      1      0      0
  MADCAM1 WILD-TYPE     21     17      7      8      6
D132V1, multiclass
        clus
vv       MADCAM1 MUTATED MADCAM1 WILD-TYPE
  CLUS_1               0                21
  CLUS_2               2                17
  CLUS_3               1                 7
  CLUS_4               0                 8
  CLUS_5               0                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MADCAM1 MUTATED        1      0      0      1      1
  MADCAM1 WILD-TYPE     12      8     14     13      6
D132V2, multiclass
        clus
vv       MADCAM1 MUTATED MADCAM1 WILD-TYPE
  CLUS_1               1                12
  CLUS_2               0                 8
  CLUS_3               0                14
  CLUS_4               1                13
  CLUS_5               1                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MADCAM1 MUTATED        0      0      1      1
  MADCAM1 WILD-TYPE     17      8     13     15
D132V3, multiclass
[1] "Remove cluster labels:" "MADCAM1 MUTATED"       
clus
  MADCAM1 MUTATED MADCAM1 WILD-TYPE 
                2                53 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5JQ        TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ        TCGA-OR-A5LK 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG        TCGA-PK-A5H8 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-PK-A5HB 
"MADCAM1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MADCAM1 MUTATED        0      0      0      2
  MADCAM1 WILD-TYPE     16     16      5     16
D132V4, multiclass
[1] "Remove cluster labels:" "MADCAM1 MUTATED"       
clus
  MADCAM1 MUTATED MADCAM1 WILD-TYPE 
                2                53 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5JA 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD        TCGA-OR-A5JF 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JP 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5JQ        TCGA-OR-A5JR        TCGA-OR-A5JT        TCGA-OR-A5JV 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5K2 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K8        TCGA-OR-A5K9        TCGA-OR-A5KO 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KZ        TCGA-OR-A5L3        TCGA-OR-A5L4 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5L6        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LJ        TCGA-OR-A5LK 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-OR-A5LL        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-P6-A5OF        TCGA-P6-A5OG        TCGA-PA-A5YG        TCGA-PK-A5H8 
"MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" "MADCAM1 WILD-TYPE" 
       TCGA-PK-A5HB 
"MADCAM1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MADCAM1 MUTATED        2      0      1
  MADCAM1 WILD-TYPE     24     12     17
D132V5, multiclass
        clus
vv       MADCAM1 MUTATED MADCAM1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                12
  CLUS_3               1                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MADCAM1 MUTATED        2      0      1      0      0
  MADCAM1 WILD-TYPE     11     19      7     14      2
D132V6, multiclass
        clus
vv       MADCAM1 MUTATED MADCAM1 WILD-TYPE
  CLUS_1               2                11
  CLUS_2               0                19
  CLUS_3               1                 7
  CLUS_4               0                14
  CLUS_5               0                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MADCAM1 MUTATED        2      0      1
  MADCAM1 WILD-TYPE     25     13     15
D132V7, multiclass
        clus
vv       MADCAM1 MUTATED MADCAM1 WILD-TYPE
  CLUS_1               2                25
  CLUS_2               0                13
  CLUS_3               1                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MADCAM1 MUTATED        1      0      1      0      0      1
  MADCAM1 WILD-TYPE      8     17      6     12      6      4
D132V8, multiclass
        clus
vv       MADCAM1 MUTATED MADCAM1 WILD-TYPE
  CLUS_1               1                 8
  CLUS_2               0                17
  CLUS_3               1                 6
  CLUS_4               0                12
  CLUS_5               0                 6
  CLUS_6               1                 4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(133) Variable = CTBP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTBP2 MUTATED        1      2      0      0      0
  CTBP2 WILD-TYPE     20     17      8      8      6
D133V1, multiclass
        clus
vv       CTBP2 MUTATED CTBP2 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             2              17
  CLUS_3             0               8
  CLUS_4             0               8
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTBP2 MUTATED        0      0      0      1      1
  CTBP2 WILD-TYPE     13      8     14     13      6
D133V2, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5JA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTBP2 MUTATED        1      0      0      1
  CTBP2 WILD-TYPE     16      8     14     15
D133V3, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5JA      TCGA-OR-A5JB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF      TCGA-OR-A5JI 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP      TCGA-OR-A5JQ 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-PK-A5HB 
"CTBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTBP2 MUTATED        0      0      1      1
  CTBP2 WILD-TYPE     16     16      4     17
D133V4, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5JA      TCGA-OR-A5JB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF      TCGA-OR-A5JI 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP      TCGA-OR-A5JQ 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV      TCGA-OR-A5JW 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2      TCGA-OR-A5K4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9      TCGA-OR-A5KO 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV      TCGA-OR-A5KW 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3      TCGA-OR-A5L4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ      TCGA-OR-A5LK 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP      TCGA-OR-A5LR 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG      TCGA-PK-A5H8 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-PK-A5HB 
"CTBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTBP2 MUTATED        0      1      1
  CTBP2 WILD-TYPE     26     11     17
D133V5, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5JA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTBP2 MUTATED        0      0      1      1      0
  CTBP2 WILD-TYPE     13     19      7     13      2
D133V6, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5JA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CTBP2 MUTATED        0      1      1
  CTBP2 WILD-TYPE     27     12     15
D133V7, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5JA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTBP2 MUTATED        0      0      0      1      0      1
  CTBP2 WILD-TYPE      9     17      7     11      6      4
D133V8, multiclass
[1] "Remove cluster labels:" "CTBP2 MUTATED"         
clus
  CTBP2 MUTATED CTBP2 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5JA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L6      TCGA-OR-A5L9      TCGA-OR-A5LA 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD      TCGA-OR-A5LJ 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-P6-A5OG      TCGA-PA-A5YG 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"CTBP2 WILD-TYPE" "CTBP2 WILD-TYPE" 

Clustering(134) Variable = MSH3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSH3 MUTATED        1      0      0      3      0
  MSH3 WILD-TYPE     20     19      8      5      6
D134V1, multiclass
        clus
vv       MSH3 MUTATED MSH3 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            0             19
  CLUS_3            0              8
  CLUS_4            3              5
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSH3 MUTATED        1      0      1      0      1
  MSH3 WILD-TYPE     12      8     13     14      6
D134V2, multiclass
        clus
vv       MSH3 MUTATED MSH3 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            0              8
  CLUS_3            1             13
  CLUS_4            0             14
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH3 MUTATED        1      0      2      0
  MSH3 WILD-TYPE     16      8     12     16
D134V3, multiclass
        clus
vv       MSH3 MUTATED MSH3 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0              8
  CLUS_3            2             12
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSH3 MUTATED        1      1      0      1
  MSH3 WILD-TYPE     15     15      5     17
D134V4, multiclass
        clus
vv       MSH3 MUTATED MSH3 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             15
  CLUS_3            0              5
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH3 MUTATED        3      0      0
  MSH3 WILD-TYPE     23     12     18
D134V5, multiclass
        clus
vv       MSH3 MUTATED MSH3 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            0             12
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSH3 MUTATED        1      0      1      1      0
  MSH3 WILD-TYPE     12     19      7     13      2
D134V6, multiclass
        clus
vv       MSH3 MUTATED MSH3 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            0             19
  CLUS_3            1              7
  CLUS_4            1             13
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSH3 MUTATED        3      0      0
  MSH3 WILD-TYPE     24     13     16
D134V7, multiclass
        clus
vv       MSH3 MUTATED MSH3 WILD-TYPE
  CLUS_1            3             24
  CLUS_2            0             13
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MSH3 MUTATED        1      0      1      1      0      0
  MSH3 WILD-TYPE      8     17      6     11      6      5
D134V8, multiclass
        clus
vv       MSH3 MUTATED MSH3 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            0             17
  CLUS_3            1              6
  CLUS_4            1             11
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(135) Variable = ATN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATN1 MUTATED        0      2      0      2      0
  ATN1 WILD-TYPE     21     17      8      6      6
D135V1, multiclass
        clus
vv       ATN1 MUTATED ATN1 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            2              6
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATN1 MUTATED        1      1      0      1      0
  ATN1 WILD-TYPE     12      7     14     13      7
D135V2, multiclass
        clus
vv       ATN1 MUTATED ATN1 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            1              7
  CLUS_3            0             14
  CLUS_4            1             13
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATN1 MUTATED        1      1      0      1
  ATN1 WILD-TYPE     16      7     14     15
D135V3, multiclass
        clus
vv       ATN1 MUTATED ATN1 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            1              7
  CLUS_3            0             14
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATN1 MUTATED        1      1      0      1
  ATN1 WILD-TYPE     15     15      5     17
D135V4, multiclass
        clus
vv       ATN1 MUTATED ATN1 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             15
  CLUS_3            0              5
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATN1 MUTATED        1      1      1
  ATN1 WILD-TYPE     25     11     17
D135V5, multiclass
        clus
vv       ATN1 MUTATED ATN1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             11
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATN1 MUTATED        1      2      0      0      0
  ATN1 WILD-TYPE     12     17      8     14      2
D135V6, multiclass
        clus
vv       ATN1 MUTATED ATN1 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            2             17
  CLUS_3            0              8
  CLUS_4            0             14
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ATN1 MUTATED        1      1      1
  ATN1 WILD-TYPE     26     12     15
D135V7, multiclass
        clus
vv       ATN1 MUTATED ATN1 WILD-TYPE
  CLUS_1            1             26
  CLUS_2            1             12
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATN1 MUTATED        1      2      0      0      0      0
  ATN1 WILD-TYPE      8     15      7     12      6      5
D135V8, multiclass
        clus
vv       ATN1 MUTATED ATN1 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            2             15
  CLUS_3            0              7
  CLUS_4            0             12
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(136) Variable = FAM46A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46A MUTATED        1      2      0      0      0
  FAM46A WILD-TYPE     20     17      8      8      6
D136V1, multiclass
        clus
vv       FAM46A MUTATED FAM46A WILD-TYPE
  CLUS_1              1               20
  CLUS_2              2               17
  CLUS_3              0                8
  CLUS_4              0                8
  CLUS_5              0                6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46A MUTATED        1      0      0      1      0
  FAM46A WILD-TYPE     12      8     14     13      7
D136V2, multiclass
[1] "Remove cluster labels:" "FAM46A MUTATED"        
clus
  FAM46A MUTATED FAM46A WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM46A MUTATED        1      0      0      1
  FAM46A WILD-TYPE     16      8     14     15
D136V3, multiclass
[1] "Remove cluster labels:" "FAM46A MUTATED"        
clus
  FAM46A MUTATED FAM46A WILD-TYPE 
               2               53 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J5 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JQ 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV       TCGA-OR-A5JW 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2       TCGA-OR-A5K4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA       TCGA-OR-A5LB 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-PK-A5HB 
"FAM46A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM46A MUTATED        1      0      0      1
  FAM46A WILD-TYPE     15     16      5     17
D136V4, multiclass
[1] "Remove cluster labels:" "FAM46A MUTATED"        
clus
  FAM46A MUTATED FAM46A WILD-TYPE 
               2               53 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J5 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8       TCGA-OR-A5JA 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD       TCGA-OR-A5JF 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL       TCGA-OR-A5JQ 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV       TCGA-OR-A5JW 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2       TCGA-OR-A5K4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9       TCGA-OR-A5KO 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV       TCGA-OR-A5KW 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3       TCGA-OR-A5L4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA       TCGA-OR-A5LB 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ       TCGA-OR-A5LK 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP       TCGA-OR-A5LR 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG       TCGA-PK-A5H8 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-PK-A5HB 
"FAM46A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46A MUTATED        1      0      1
  FAM46A WILD-TYPE     25     12     17
D136V5, multiclass
[1] "Remove cluster labels:" "FAM46A MUTATED"        
clus
  FAM46A MUTATED FAM46A WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46A MUTATED        0      1      0      1      0
  FAM46A WILD-TYPE     13     18      8     13      2
D136V6, multiclass
[1] "Remove cluster labels:" "FAM46A MUTATED"        
clus
  FAM46A MUTATED FAM46A WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46A MUTATED        1      0      1
  FAM46A WILD-TYPE     26     13     15
D136V7, multiclass
[1] "Remove cluster labels:" "FAM46A MUTATED"        
clus
  FAM46A MUTATED FAM46A WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM46A MUTATED        0      1      0      1      0      0
  FAM46A WILD-TYPE      9     16      7     11      6      5
D136V8, multiclass
[1] "Remove cluster labels:" "FAM46A MUTATED"        
clus
  FAM46A MUTATED FAM46A WILD-TYPE 
               2               54 
      TCGA-OR-A5J1       TCGA-OR-A5J2       TCGA-OR-A5J3       TCGA-OR-A5J4 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5J5       TCGA-OR-A5J6       TCGA-OR-A5J7       TCGA-OR-A5J8 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JA       TCGA-OR-A5JB       TCGA-OR-A5JC       TCGA-OR-A5JD 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JF       TCGA-OR-A5JI       TCGA-OR-A5JK       TCGA-OR-A5JL 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JQ       TCGA-OR-A5JR       TCGA-OR-A5JT       TCGA-OR-A5JV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5JW       TCGA-OR-A5JX       TCGA-OR-A5JY       TCGA-OR-A5K2 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5K4       TCGA-OR-A5K5       TCGA-OR-A5K8       TCGA-OR-A5K9 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KO       TCGA-OR-A5KT       TCGA-OR-A5KU       TCGA-OR-A5KV 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5KW       TCGA-OR-A5KX       TCGA-OR-A5KZ       TCGA-OR-A5L3 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5L4       TCGA-OR-A5L5       TCGA-OR-A5L6       TCGA-OR-A5LA 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LB       TCGA-OR-A5LC       TCGA-OR-A5LD       TCGA-OR-A5LJ 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LK       TCGA-OR-A5LL       TCGA-OR-A5LO       TCGA-OR-A5LP 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-OR-A5LR       TCGA-P6-A5OF       TCGA-P6-A5OG       TCGA-PA-A5YG 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 
      TCGA-PK-A5H8       TCGA-PK-A5HB 
"FAM46A WILD-TYPE" "FAM46A WILD-TYPE" 

Clustering(137) Variable = UTS2R MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UTS2R MUTATED        0      1      0      1      1
  UTS2R WILD-TYPE     21     18      8      7      5
D137V1, multiclass
        clus
vv       UTS2R MUTATED UTS2R WILD-TYPE
  CLUS_1             0              21
  CLUS_2             1              18
  CLUS_3             0               8
  CLUS_4             1               7
  CLUS_5             1               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UTS2R MUTATED        1      0      0      1      1
  UTS2R WILD-TYPE     12      8     14     13      6
D137V2, multiclass
        clus
vv       UTS2R MUTATED UTS2R WILD-TYPE
  CLUS_1             1              12
  CLUS_2             0               8
  CLUS_3             0              14
  CLUS_4             1              13
  CLUS_5             1               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UTS2R MUTATED        1      0      0      2
  UTS2R WILD-TYPE     16      8     14     14
D137V3, multiclass
        clus
vv       UTS2R MUTATED UTS2R WILD-TYPE
  CLUS_1             1              16
  CLUS_2             0               8
  CLUS_3             0              14
  CLUS_4             2              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UTS2R MUTATED        1      0      0      2
  UTS2R WILD-TYPE     15     16      5     16
D137V4, multiclass
        clus
vv       UTS2R MUTATED UTS2R WILD-TYPE
  CLUS_1             1              15
  CLUS_2             0              16
  CLUS_3             0               5
  CLUS_4             2              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UTS2R MUTATED        1      0      2
  UTS2R WILD-TYPE     25     12     16
D137V5, multiclass
        clus
vv       UTS2R MUTATED UTS2R WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              12
  CLUS_3             2              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UTS2R MUTATED        1      2      0      0      0
  UTS2R WILD-TYPE     12     17      8     14      2
D137V6, multiclass
        clus
vv       UTS2R MUTATED UTS2R WILD-TYPE
  CLUS_1             1              12
  CLUS_2             2              17
  CLUS_3             0               8
  CLUS_4             0              14
  CLUS_5             0               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UTS2R MUTATED        1      0      2
  UTS2R WILD-TYPE     26     13     14
D137V7, multiclass
        clus
vv       UTS2R MUTATED UTS2R WILD-TYPE
  CLUS_1             1              26
  CLUS_2             0              13
  CLUS_3             2              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UTS2R MUTATED        1      2      0      0      0      0
  UTS2R WILD-TYPE      8     15      7     12      6      5
D137V8, multiclass
        clus
vv       UTS2R MUTATED UTS2R WILD-TYPE
  CLUS_1             1               8
  CLUS_2             2              15
  CLUS_3             0               7
  CLUS_4             0              12
  CLUS_5             0               6
  CLUS_6             0               5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(138) Variable = SMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG1 MUTATED        0      1      1      0      1
  SMG1 WILD-TYPE     21     18      7      8      5
D138V1, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            1             18
  CLUS_3            1              7
  CLUS_4            0              8
  CLUS_5            1              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG1 MUTATED        0      2      1      0      0
  SMG1 WILD-TYPE     13      6     13     14      7
D138V2, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            2              6
  CLUS_3            1             13
  CLUS_4            0             14
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG1 MUTATED        0      1      2      0
  SMG1 WILD-TYPE     17      7     12     16
D138V3, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1              7
  CLUS_3            2             12
  CLUS_4            0             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMG1 MUTATED        0      3      0      0
  SMG1 WILD-TYPE     16     13      5     18
D138V4, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            0             16
  CLUS_2            3             13
  CLUS_3            0              5
  CLUS_4            0             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG1 MUTATED        3      0      0
  SMG1 WILD-TYPE     23     12     18
D138V5, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            0             12
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMG1 MUTATED        1      0      1      0      1
  SMG1 WILD-TYPE     12     19      7     14      1
D138V6, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            0             19
  CLUS_3            1              7
  CLUS_4            0             14
  CLUS_5            1              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMG1 MUTATED        3      0      0
  SMG1 WILD-TYPE     24     13     16
D138V7, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            3             24
  CLUS_2            0             13
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMG1 MUTATED        1      0      1      0      1      0
  SMG1 WILD-TYPE      8     17      6     12      5      5
D138V8, multiclass
        clus
vv       SMG1 MUTATED SMG1 WILD-TYPE
  CLUS_1            1              8
  CLUS_2            0             17
  CLUS_3            1              6
  CLUS_4            0             12
  CLUS_5            1              5
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(139) Variable = FUCA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUCA1 MUTATED        1      0      1      1      0
  FUCA1 WILD-TYPE     20     19      7      7      6
D139V1, multiclass
        clus
vv       FUCA1 MUTATED FUCA1 WILD-TYPE
  CLUS_1             1              20
  CLUS_2             0              19
  CLUS_3             1               7
  CLUS_4             1               7
  CLUS_5             0               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUCA1 MUTATED        0      1      0      1      0
  FUCA1 WILD-TYPE     13      7     14     13      7
D139V2, multiclass
[1] "Remove cluster labels:" "FUCA1 MUTATED"         
clus
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-PA-A5YG 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUCA1 MUTATED        1      1      0      0
  FUCA1 WILD-TYPE     16      7     14     16
D139V3, multiclass
[1] "Remove cluster labels:" "FUCA1 MUTATED"         
clus
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-PA-A5YG      TCGA-PK-A5H8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-PK-A5HB 
"FUCA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FUCA1 MUTATED        1      0      1      0
  FUCA1 WILD-TYPE     15     16      4     18
D139V4, multiclass
[1] "Remove cluster labels:" "FUCA1 MUTATED"         
clus
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              2              53 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J5 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8      TCGA-OR-A5JA 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD      TCGA-OR-A5JF 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL      TCGA-OR-A5JP 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT      TCGA-OR-A5JV 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY      TCGA-OR-A5K2 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8      TCGA-OR-A5K9 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU      TCGA-OR-A5KV 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ      TCGA-OR-A5L3 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6      TCGA-OR-A5L9 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC      TCGA-OR-A5LD 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO      TCGA-OR-A5LP 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-PA-A5YG      TCGA-PK-A5H8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-PK-A5HB 
"FUCA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUCA1 MUTATED        0      2      0
  FUCA1 WILD-TYPE     26     10     18
D139V5, multiclass
[1] "Remove cluster labels:" "FUCA1 MUTATED"         
clus
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-PA-A5YG 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FUCA1 MUTATED        0      1      0      1      0
  FUCA1 WILD-TYPE     13     18      8     13      2
D139V6, multiclass
[1] "Remove cluster labels:" "FUCA1 MUTATED"         
clus
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-PA-A5YG 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FUCA1 MUTATED        0      2      0
  FUCA1 WILD-TYPE     27     11     16
D139V7, multiclass
[1] "Remove cluster labels:" "FUCA1 MUTATED"         
clus
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-PA-A5YG 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FUCA1 MUTATED        0      0      0      1      1      0
  FUCA1 WILD-TYPE      9     17      7     11      5      5
D139V8, multiclass
[1] "Remove cluster labels:" "FUCA1 MUTATED"         
clus
  FUCA1 MUTATED FUCA1 WILD-TYPE 
              2              54 
     TCGA-OR-A5J1      TCGA-OR-A5J2      TCGA-OR-A5J3      TCGA-OR-A5J4 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5J5      TCGA-OR-A5J6      TCGA-OR-A5J7      TCGA-OR-A5J8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JA      TCGA-OR-A5JB      TCGA-OR-A5JC      TCGA-OR-A5JD 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JF      TCGA-OR-A5JI      TCGA-OR-A5JK      TCGA-OR-A5JL 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JP      TCGA-OR-A5JQ      TCGA-OR-A5JR      TCGA-OR-A5JT 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5JV      TCGA-OR-A5JW      TCGA-OR-A5JX      TCGA-OR-A5JY 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K2      TCGA-OR-A5K4      TCGA-OR-A5K5      TCGA-OR-A5K8 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5K9      TCGA-OR-A5KO      TCGA-OR-A5KT      TCGA-OR-A5KU 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5KV      TCGA-OR-A5KW      TCGA-OR-A5KX      TCGA-OR-A5KZ 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L3      TCGA-OR-A5L4      TCGA-OR-A5L5      TCGA-OR-A5L6 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5L9      TCGA-OR-A5LA      TCGA-OR-A5LB      TCGA-OR-A5LC 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LD      TCGA-OR-A5LK      TCGA-OR-A5LL      TCGA-OR-A5LO 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-OR-A5LP      TCGA-OR-A5LR      TCGA-P6-A5OF      TCGA-PA-A5YG 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 
     TCGA-PK-A5H8      TCGA-PK-A5HB 
"FUCA1 WILD-TYPE" "FUCA1 WILD-TYPE" 

Clustering(140) Variable = FEZ2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FEZ2 MUTATED        0      2      1      0      0
  FEZ2 WILD-TYPE     21     17      7      8      6
D140V1, multiclass
        clus
vv       FEZ2 MUTATED FEZ2 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            2             17
  CLUS_3            1              7
  CLUS_4            0              8
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FEZ2 MUTATED        0      1      1      0      1
  FEZ2 WILD-TYPE     13      7     13     14      6
D140V2, multiclass
        clus
vv       FEZ2 MUTATED FEZ2 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1              7
  CLUS_3            1             13
  CLUS_4            0             14
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FEZ2 MUTATED        0      1      0      2
  FEZ2 WILD-TYPE     17      7     14     14
D140V3, multiclass
        clus
vv       FEZ2 MUTATED FEZ2 WILD-TYPE
  CLUS_1            0             17
  CLUS_2            1              7
  CLUS_3            0             14
  CLUS_4            2             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FEZ2 MUTATED        1      0      0      2
  FEZ2 WILD-TYPE     15     16      5     16
D140V4, multiclass
        clus
vv       FEZ2 MUTATED FEZ2 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            0             16
  CLUS_3            0              5
  CLUS_4            2             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FEZ2 MUTATED        0      1      2
  FEZ2 WILD-TYPE     26     11     16
D140V5, multiclass
        clus
vv       FEZ2 MUTATED FEZ2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             11
  CLUS_3            2             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FEZ2 MUTATED        0      1      1      1      0
  FEZ2 WILD-TYPE     13     18      7     13      2
D140V6, multiclass
        clus
vv       FEZ2 MUTATED FEZ2 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1             18
  CLUS_3            1              7
  CLUS_4            1             13
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FEZ2 MUTATED        0      1      2
  FEZ2 WILD-TYPE     27     12     14
D140V7, multiclass
        clus
vv       FEZ2 MUTATED FEZ2 WILD-TYPE
  CLUS_1            0             27
  CLUS_2            1             12
  CLUS_3            2             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FEZ2 MUTATED        0      1      0      1      0      1
  FEZ2 WILD-TYPE      9     16      7     11      6      4
D140V8, multiclass
        clus
vv       FEZ2 MUTATED FEZ2 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            1             16
  CLUS_3            0              7
  CLUS_4            1             11
  CLUS_5            0              6
  CLUS_6            1              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(141) Variable = GLI3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI3 MUTATED        3      1      0      1      0
  GLI3 WILD-TYPE     18     18      8      7      6
D141V1, multiclass
        clus
vv       GLI3 MUTATED GLI3 WILD-TYPE
  CLUS_1            3             18
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            1              7
  CLUS_5            0              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI3 MUTATED        2      0      0      1      1
  GLI3 WILD-TYPE     11      8     14     13      6
D141V2, multiclass
        clus
vv       GLI3 MUTATED GLI3 WILD-TYPE
  CLUS_1            2             11
  CLUS_2            0              8
  CLUS_3            0             14
  CLUS_4            1             13
  CLUS_5            1              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI3 MUTATED        2      0      1      1
  GLI3 WILD-TYPE     15      8     13     15
D141V3, multiclass
        clus
vv       GLI3 MUTATED GLI3 WILD-TYPE
  CLUS_1            2             15
  CLUS_2            0              8
  CLUS_3            1             13
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI3 MUTATED        2      1      0      1
  GLI3 WILD-TYPE     14     15      5     17
D141V4, multiclass
        clus
vv       GLI3 MUTATED GLI3 WILD-TYPE
  CLUS_1            2             14
  CLUS_2            1             15
  CLUS_3            0              5
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI3 MUTATED        4      0      0
  GLI3 WILD-TYPE     22     12     18
D141V5, multiclass
        clus
vv       GLI3 MUTATED GLI3 WILD-TYPE
  CLUS_1            4             22
  CLUS_2            0             12
  CLUS_3            0             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI3 MUTATED        1      0      1      2      0
  GLI3 WILD-TYPE     12     19      7     12      2
D141V6, multiclass
        clus
vv       GLI3 MUTATED GLI3 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            0             19
  CLUS_3            1              7
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI3 MUTATED        4      0      0
  GLI3 WILD-TYPE     23     13     16
D141V7, multiclass
        clus
vv       GLI3 MUTATED GLI3 WILD-TYPE
  CLUS_1            4             23
  CLUS_2            0             13
  CLUS_3            0             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLI3 MUTATED        0      0      2      2      0      0
  GLI3 WILD-TYPE      9     17      5     10      6      5
D141V8, multiclass
        clus
vv       GLI3 MUTATED GLI3 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            0             17
  CLUS_3            2              5
  CLUS_4            2             10
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(142) Variable = NOL9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOL9 MUTATED        0      0      0      3      1
  NOL9 WILD-TYPE     21     19      8      5      5
D142V1, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            0             21
  CLUS_2            0             19
  CLUS_3            0              8
  CLUS_4            3              5
  CLUS_5            1              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOL9 MUTATED        1      0      1      1      0
  NOL9 WILD-TYPE     12      8     13     13      7
D142V2, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            1             12
  CLUS_2            0              8
  CLUS_3            1             13
  CLUS_4            1             13
  CLUS_5            0              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL9 MUTATED        1      0      1      1
  NOL9 WILD-TYPE     16      8     13     15
D142V3, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            1             16
  CLUS_2            0              8
  CLUS_3            1             13
  CLUS_4            1             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOL9 MUTATED        1      1      0      1
  NOL9 WILD-TYPE     15     15      5     17
D142V4, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            1             15
  CLUS_2            1             15
  CLUS_3            0              5
  CLUS_4            1             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL9 MUTATED        1      1      1
  NOL9 WILD-TYPE     25     11     17
D142V5, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             11
  CLUS_3            1             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOL9 MUTATED        0      1      0      2      0
  NOL9 WILD-TYPE     13     18      8     12      2
D142V6, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            0             13
  CLUS_2            1             18
  CLUS_3            0              8
  CLUS_4            2             12
  CLUS_5            0              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOL9 MUTATED        1      1      1
  NOL9 WILD-TYPE     26     12     15
D142V7, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            1             26
  CLUS_2            1             12
  CLUS_3            1             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOL9 MUTATED        0      1      0      2      0      0
  NOL9 WILD-TYPE      9     16      7     10      6      5
D142V8, multiclass
        clus
vv       NOL9 MUTATED NOL9 WILD-TYPE
  CLUS_1            0              9
  CLUS_2            1             16
  CLUS_3            0              7
  CLUS_4            2             10
  CLUS_5            0              6
  CLUS_6            0              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
