		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p34.2	70 (27%)	194	9.9999e-06	0.007	0.00164	0.999	0.17799	1	0.3808	1	0.79217	1	0.4327	1	0.14803	1	0.30161	1	0.82185	1	0.92907	1
amp_1q21.3	128 (48%)	136	9.9999e-06	0.007	2e-05	0.0132	0.39117	1	0.72182	1	0.02523	1	0.03832	1	0.04417	1	0.00376	1	0.33547	1	0.12494	1
amp_1q23.3	135 (51%)	129	9.9999e-06	0.007	0.00162	0.988	0.55099	1	0.88627	1	0.12314	1	0.30857	1	0.00309	1	0.01438	1	0.0414	1	0.04955	1
amp_3p25.2	127 (48%)	137	9.9999e-06	0.007	4e-05	0.0261	0.078949	1	0.01035	1	9.9999e-06	0.007	2e-05	0.0132	6.9999e-05	0.0454	2e-05	0.0132	9.9999e-06	0.007	7.9999e-05	0.0518
amp_3q26.32	142 (54%)	122	9.9999e-06	0.007	0.56991	1	0.3892	1	0.15424	1	0.73857	1	0.36805	1	0.57465	1	0.0065299	1	0.41707	1	0.090859	1
amp_4p16.3	53 (20%)	211	0.00245	1	0.04893	1	0.03289	1	0.02675	1	0.0078699	1	0.00067999	0.423	0.02052	1	0.0050399	1	0.0080399	1	0.01743	1
amp_4q13.3	49 (19%)	215	0.00049	0.308	0.0080699	1	0.58087	1	0.70537	1	0.37131	1	0.3167	1	0.42814	1	0.077899	1	0.073529	1	0.071279	1
amp_4q31.21	29 (11%)	235	0.18196	1	0.20092	1	0.1233	1	0.26272	1	0.29277	1	0.17958	1	0.23632	1	0.065289	1	0.84222	1	0.33176	1
amp_5p15.33	131 (50%)	133	9.9999e-06	0.007	0.04062	1	0.02093	1	0.17973	1	0.46923	1	0.23276	1	0.0090999	1	0.00022	0.141	0.21483	1	0.00429	1
amp_6p22.3	111 (42%)	153	9.9999e-06	0.007	0.0014	0.857	0.32117	1	0.48654	1	0.73714	1	0.80681	1	0.29368	1	0.17559	1	0.35447	1	0.12462	1
amp_6q21	23 (9%)	241	0.04177	1	0.091779	1	0.51488	1	0.078879	1	0.48392	1	0.60533	1	0.78881	1	0.22936	1	0.74008	1	0.83606	1
amp_7p21.1	134 (51%)	130	0.00014	0.0902	0.01314	1	0.13255	1	0.32016	1	0.88788	1	0.87968	1	0.19318	1	0.083879	1	0.72809	1	0.4702	1
amp_7p11.2	131 (50%)	133	9.9999e-06	0.007	0.0148	1	0.089699	1	0.59974	1	0.98718	1	0.51581	1	0.4044	1	0.23988	1	0.64153	1	0.54317	1
amp_8p11.23	84 (32%)	180	9.9999e-06	0.007	0.096959	1	0.7458	1	0.79102	1	1	1	0.74973	1	0.24431	1	0.54427	1	0.067889	1	0.41141	1
amp_8p11.21	86 (33%)	178	9.9999e-06	0.007	0.0274	1	0.88829	1	0.94924	1	0.52196	1	0.39897	1	0.03205	1	0.00147	0.898	0.02083	1	0.01891	1
amp_8q22.3	169 (64%)	95	9.9999e-06	0.007	0.00074999	0.465	0.02433	1	0.19279	1	0.61205	1	0.62928	1	0.080249	1	0.00063999	0.399	0.01792	1	0.11381	1
amp_9p24.1	53 (20%)	211	9.9999e-06	0.007	0.28403	1	0.67129	1	0.32592	1	0.32987	1	0.079509	1	0.94206	1	0.03888	1	0.82552	1	0.27558	1
amp_10p14	116 (44%)	148	9.9999e-06	0.007	9.9999e-06	0.007	0.35742	1	0.42614	1	0.51515	1	0.10967	1	0.43308	1	0.16169	1	0.38784	1	0.22965	1
amp_11q13.3	101 (38%)	163	7.9999e-05	0.0518	0.32276	1	0.2343	1	0.079429	1	0.18328	1	0.15279	1	0.16995	1	0.00423	1	0.65337	1	0.71628	1
amp_11q22.2	49 (19%)	215	0.15145	1	0.1288	1	0.73145	1	0.41342	1	0.067649	1	0.01448	1	0.096019	1	0.00133	0.815	0.15985	1	0.16098	1
amp_12q15	77 (29%)	187	0.0070299	1	0.13224	1	0.03847	1	0.01982	1	0.022	1	0.02151	1	0.18779	1	0.0174	1	0.03567	1	0.0083299	1
amp_13q22.1	84 (32%)	180	0.29128	1	0.75018	1	0.96171	1	0.85037	1	0.88643	1	0.95442	1	0.75214	1	0.68335	1	0.57537	1	0.33485	1
amp_14q11.2	63 (24%)	201	0.74221	1	0.42207	1	0.61396	1	0.090279	1	0.35499	1	0.31655	1	0.48973	1	0.00029	0.184	0.57334	1	1	1
amp_16p13.13	56 (21%)	208	0.00039	0.246	0.25315	1	0.52001	1	0.67301	1	0.35011	1	0.78167	1	0.61658	1	0.28597	1	0.50449	1	0.41397	1
amp_16p11.2	64 (24%)	200	0.01009	1	0.25102	1	0.46906	1	0.36812	1	0.78233	1	0.71165	1	0.86738	1	0.65606	1	0.75479	1	0.96152	1
amp_16q22.1	75 (28%)	189	0.065069	1	0.85869	1	0.084299	1	0.086139	1	0.069539	1	0.055489	1	0.41345	1	0.19119	1	0.28896	1	0.49965	1
amp_17q11.2	117 (44%)	147	9.9999e-06	0.007	0.00022	0.141	0.03212	1	0.088549	1	0.00039	0.246	0.00305	1	0.059159	1	0.00070999	0.441	0.00187	1	0.01008	1
amp_17q12	110 (42%)	154	9.9999e-06	0.007	0.16331	1	0.077919	1	0.01869	1	0.0051099	1	0.01534	1	0.00363	1	0.00177	1	0.00017	0.109	0.00112	0.689
amp_19q12	109 (41%)	155	9.9999e-06	0.007	0.00021	0.135	0.70337	1	0.54649	1	0.058239	1	0.15945	1	0.35564	1	0.00111	0.684	0.33406	1	0.04543	1
amp_19q13.43	103 (39%)	161	9.9999e-06	0.007	0.0090799	1	0.16723	1	0.30171	1	0.30513	1	0.94534	1	0.67151	1	0.03524	1	0.25977	1	0.03667	1
amp_20q11.21	171 (65%)	93	3e-04	0.19	0.04586	1	0.71273	1	0.055419	1	0.94376	1	0.32041	1	0.48799	1	0.00195	1	0.32985	1	0.5753	1
amp_22q11.23	55 (21%)	209	0.00057999	0.364	0.03632	1	0.59177	1	0.60956	1	0.02793	1	0.10273	1	0.16172	1	0.23539	1	0.4335	1	0.51918	1
del_1p36.11	52 (20%)	212	0.45979	1	0.17734	1	0.2511	1	0.0303	1	0.18944	1	0.60302	1	0.81364	1	0.32946	1	0.51978	1	0.34351	1
del_1q32.1	47 (18%)	217	0.097279	1	0.14189	1	0.35298	1	0.60137	1	0.43002	1	0.10743	1	0.1571	1	0.01016	1	0.097259	1	0.33867	1
del_2q22.1	80 (30%)	184	0.00331	1	0.089639	1	0.27064	1	0.94252	1	0.13681	1	0.15248	1	0.30914	1	0.25438	1	0.13756	1	0.38814	1
del_2q37.1	130 (49%)	134	9.9999e-06	0.007	0.0117	1	0.59313	1	0.44326	1	0.3067	1	0.122	1	0.068479	1	0.076189	1	0.084059	1	0.063559	1
del_3p21.31	77 (29%)	187	0.03576	1	0.38279	1	0.03012	1	0.0073299	1	9.9999e-06	0.007	4e-05	0.0261	0.10575	1	0.01948	1	0.13393	1	0.062619	1
del_3p14.2	75 (28%)	189	0.057769	1	0.49904	1	0.03373	1	0.01723	1	2e-05	0.0132	2e-05	0.0132	0.35069	1	0.00261	1	0.088929	1	0.04052	1
del_3p13	71 (27%)	193	0.38607	1	0.36583	1	0.1196	1	0.0023	1	2e-05	0.0132	0.00011	0.0709	0.53563	1	0.04099	1	0.17199	1	0.01712	1
del_4q22.1	109 (41%)	155	0.27333	1	0.25792	1	0.50697	1	0.50167	1	0.091889	1	0.068499	1	0.30389	1	0.14003	1	0.085489	1	0.0344	1
del_4q34.2	119 (45%)	145	0.01272	1	0.3381	1	0.45765	1	0.79513	1	0.73154	1	0.48843	1	0.053219	1	0.14638	1	0.18597	1	0.078969	1
del_5q11.2	133 (50%)	131	9.9999e-06	0.007	0.00091999	0.569	0.9575	1	0.62462	1	0.57783	1	0.077879	1	0.17201	1	0.00279	1	0.6089	1	0.14194	1
del_5q35.1	126 (48%)	138	3e-05	0.0197	0.00017	0.109	0.47186	1	0.32986	1	0.42847	1	0.059069	1	0.39342	1	0.0087199	1	0.50715	1	0.04811	1
del_6p25.3	69 (26%)	195	0.01653	1	0.03402	1	0.83866	1	0.87194	1	0.42455	1	0.074439	1	0.6044	1	0.27446	1	0.94802	1	0.54386	1
del_6q21	117 (44%)	147	9.9999e-06	0.007	0.02546	1	0.85456	1	0.43172	1	0.64491	1	0.069049	1	0.32599	1	0.00472	1	0.4154	1	0.10108	1
del_6q27	119 (45%)	145	9.9999e-06	0.007	0.01645	1	0.66075	1	0.43519	1	0.24081	1	0.01099	1	0.080519	1	3e-05	0.0197	0.16631	1	0.066939	1
del_7q36.3	39 (15%)	225	0.44934	1	0.054509	1	0.20577	1	0.23779	1	0.29111	1	0.40404	1	0.71698	1	0.01558	1	1	1	0.89435	1
del_8p23.3	151 (57%)	113	9.9999e-06	0.007	9.9999e-06	0.007	0.55268	1	0.19411	1	0.18169	1	0.85748	1	0.00239	1	0.01253	1	0.0381	1	0.03326	1
del_8p12	129 (49%)	135	9.9999e-06	0.007	0.00061999	0.388	0.55348	1	0.51585	1	0.13314	1	0.88512	1	0.03832	1	0.21944	1	0.12573	1	0.064179	1
del_8p11.21	69 (26%)	195	7.9999e-05	0.0518	0.44874	1	0.21338	1	0.24832	1	0.22791	1	0.27725	1	0.065399	1	0.39548	1	0.054629	1	0.054669	1
del_9p23	115 (44%)	149	9.9999e-06	0.007	0.3453	1	0.22029	1	0.20325	1	0.86586	1	0.04806	1	0.40232	1	0.66848	1	0.69368	1	0.69088	1
del_9p21.3	157 (59%)	107	9.9999e-06	0.007	0.86258	1	0.45214	1	0.0103	1	0.72564	1	0.074249	1	0.8843	1	0.93299	1	0.59336	1	0.83349	1
del_9q33.2	104 (39%)	160	9.9999e-06	0.007	0.03384	1	0.066709	1	0.00322	1	0.0129	1	0.00022	0.141	0.46358	1	0.099409	1	0.12906	1	0.02292	1
del_10p12.1	43 (16%)	221	0.95403	1	0.15515	1	0.89101	1	0.42982	1	0.01571	1	0.03671	1	0.36242	1	0.26441	1	0.36317	1	0.41835	1
del_10q23.31	106 (40%)	158	0.00251	1	0.01588	1	0.62752	1	0.59373	1	0.088239	1	0.63527	1	0.71269	1	0.10546	1	0.66979	1	0.38528	1
del_11p15.5	129 (49%)	135	9.9999e-06	0.007	0.00092999	0.574	0.36529	1	0.24309	1	0.02518	1	0.00061999	0.388	0.02986	1	0.10218	1	0.01518	1	0.11899	1
del_11q23.3	100 (38%)	164	9.9999e-06	0.007	0.12362	1	0.77519	1	0.83866	1	0.03203	1	0.084129	1	0.24156	1	0.80377	1	0.31591	1	0.62484	1
del_13q14.2	103 (39%)	161	4e-04	0.252	0.57544	1	0.0080299	1	0.00318	1	0.02373	1	0.4714	1	0.78218	1	0.0252	1	0.36551	1	0.6934	1
del_14q12	80 (30%)	184	9.9999e-06	0.007	0.00042	0.264	0.12074	1	0.070859	1	0.14436	1	0.0226	1	0.03991	1	0.02664	1	0.1166	1	0.35178	1
del_14q24.1	86 (33%)	178	9.9999e-06	0.007	9.9999e-06	0.007	0.39276	1	0.34597	1	0.00283	1	9.9999e-06	0.007	0.04636	1	0.00062999	0.393	0.084619	1	0.084149	1
del_15q13.1	107 (41%)	157	0.00026	0.166	0.00127	0.78	0.31931	1	0.5717	1	0.94665	1	0.56739	1	0.16178	1	5.9999e-05	0.0391	0.2816	1	0.16493	1
del_16p13.3	104 (39%)	160	0.00086999	0.539	0.01377	1	0.21255	1	0.46618	1	0.69438	1	0.91778	1	0.9467	1	0.03611	1	0.75934	1	0.83208	1
del_16q23.1	73 (28%)	191	5.9999e-05	0.0391	0.03422	1	0.50271	1	0.064299	1	0.088439	1	0.18246	1	0.03139	1	0.00031	0.196	0.1543	1	0.01403	1
del_17p12	137 (52%)	127	9.9999e-06	0.007	0.02255	1	0.20067	1	0.60918	1	0.37559	1	0.059869	1	0.75127	1	0.01031	1	0.86923	1	0.86368	1
del_18q21.2	115 (44%)	149	0.057109	1	0.87563	1	0.87183	1	0.74547	1	0.87651	1	0.67224	1	0.00457	1	0.00028	0.178	0.059639	1	0.03451	1
del_19p13.3	96 (36%)	168	0.00222	1	0.28082	1	0.85525	1	0.60751	1	0.0415	1	0.074339	1	0.45199	1	0.058459	1	0.17807	1	0.36037	1
del_22q13.31	118 (45%)	146	3e-05	0.0197	0.00178	1	0.45137	1	0.0077399	1	0.10204	1	0.46243	1	0.64462	1	0.10639	1	0.098099	1	0.49855	1
del_xp11.3	62 (23%)	202	0.0317	1	0.02897	1	0.73545	1	0.61682	1	0.20693	1	0.96226	1	0.094059	1	0.83756	1	0.29113	1	0.78545	1
del_xq21.33	53 (20%)	211	0.00276	1	0.01981	1	0.98031	1	0.4391	1	0.03412	1	0.23934	1	0.04933	1	0.37538	1	0.22526	1	0.056049	1
del_xq23	49 (19%)	215	0.065379	1	0.03048	1	0.99536	1	0.62269	1	0.33752	1	0.65451	1	0.22428	1	0.42372	1	0.17995	1	0.19647	1
