		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	57 (22%)	207	0.03061	1	0.01426	1	0.69147	1	0.61314	1	0.79533	1	0.99612	1	0.69607	1	0.85667	1	0.95953	1	0.84299	1
1q gain	83 (31%)	181	0.00084999	0.649	0.2509	1	0.59952	1	0.88492	1	0.77475	1	0.9514	1	0.76262	1	0.9772	1	0.70178	1	0.81839	1
2p gain	75 (28%)	189	0.00018	0.14	9.9999e-06	0.008	0.32641	1	0.73537	1	0.10744	1	0.062979	1	0.1366	1	0.03561	1	0.1992	1	0.03668	1
2q gain	37 (14%)	227	0.096529	1	0.16703	1	0.30759	1	0.35161	1	0.428	1	0.55354	1	0.5023	1	0.41589	1	0.72758	1	0.31184	1
3p gain	92 (35%)	172	0.00214	1	0.22855	1	0.098109	1	0.40494	1	0.0075299	1	0.01838	1	0.0031	1	0.0094299	1	0.00168	1	0.00105	0.801
3q gain	118 (45%)	146	5e-05	0.0393	0.36276	1	0.5678	1	1	1	0.39873	1	0.19703	1	0.0091799	1	0.00056999	0.438	0.00128	0.975	0.00044	0.34
4p gain	33 (12%)	231	0.00072999	0.56	0.01334	1	0.60785	1	0.41372	1	0.034	1	0.0057699	1	0.13474	1	0.00183	1	0.054829	1	0.00471	1
4q gain	19 (7%)	245	0.0050699	1	0.02649	1	0.54391	1	0.20304	1	0.03761	1	0.089979	1	0.26758	1	0.13224	1	0.32464	1	0.40934	1
5p gain	103 (39%)	161	0.00283	1	0.17657	1	0.04292	1	0.24014	1	0.32599	1	0.12277	1	0.070179	1	0.03605	1	0.34589	1	0.10618	1
5q gain	37 (14%)	227	0.36763	1	0.04012	1	0.02403	1	0.28277	1	0.78592	1	0.73802	1	0.26076	1	0.14427	1	0.11959	1	0.50283	1
6p gain	43 (16%)	221	0.46474	1	0.74315	1	0.84726	1	0.13289	1	0.43583	1	0.30538	1	0.54461	1	0.75045	1	0.56031	1	0.83261	1
6q gain	24 (9%)	240	0.36939	1	0.81629	1	0.97496	1	0.04161	1	0.30578	1	0.054469	1	0.28684	1	0.40867	1	0.20779	1	0.74091	1
7p gain	111 (42%)	153	0.00024	0.186	0.10203	1	0.02114	1	0.44523	1	0.92327	1	0.7949	1	0.26302	1	0.33277	1	0.55499	1	0.27892	1
7q gain	101 (38%)	163	0.00237	1	0.33139	1	0.19441	1	0.92124	1	0.82469	1	0.31003	1	0.33106	1	0.46148	1	0.39591	1	0.11802	1
8p gain	55 (21%)	209	8.9999e-05	0.0704	0.058449	1	0.083309	1	0.01844	1	0.52263	1	0.99619	1	0.26017	1	0.01781	1	0.14006	1	0.16102	1
8q gain	122 (46%)	142	0.00017	0.133	0.01499	1	0.03972	1	0.18644	1	0.35508	1	0.84047	1	0.35276	1	0.01175	1	0.10857	1	0.14539	1
9p gain	40 (15%)	224	0.00044	0.34	0.66047	1	0.8596	1	0.3811	1	0.188	1	0.10027	1	0.33726	1	0.12882	1	0.74478	1	0.29708	1
9q gain	36 (14%)	228	0.01654	1	0.1723	1	0.88095	1	0.02928	1	0.0064999	1	0.00075999	0.581	0.97369	1	0.37055	1	0.86471	1	0.04958	1
10p gain	75 (28%)	189	5.9999e-05	0.0471	0.00414	1	0.8371	1	0.43109	1	0.67049	1	0.083019	1	0.63832	1	0.78579	1	0.77542	1	0.9823	1
10q gain	23 (9%)	241	0.04398	1	0.092439	1	0.55955	1	0.54901	1	0.52557	1	0.01168	1	0.78748	1	0.68979	1	0.77267	1	0.46436	1
11p gain	25 (9%)	239	0.42826	1	0.082899	1	0.11384	1	0.12185	1	0.083959	1	0.059379	1	0.48932	1	0.0138	1	0.57514	1	0.081499	1
11q gain	37 (14%)	227	0.57738	1	0.42894	1	0.19951	1	0.04724	1	0.17786	1	0.0214	1	0.63349	1	0.10447	1	0.75305	1	0.15839	1
12p gain	75 (28%)	189	0.069719	1	0.19791	1	0.75808	1	0.5305	1	0.73891	1	0.9531	1	0.85387	1	0.13782	1	0.72504	1	0.39637	1
12q gain	56 (21%)	208	0.00407	1	0.0088299	1	0.068079	1	0.01288	1	0.11377	1	0.064999	1	0.51729	1	0.38367	1	0.36627	1	0.15337	1
13q gain	70 (27%)	194	0.23974	1	0.89464	1	0.97582	1	0.83944	1	0.24032	1	0.42356	1	0.75456	1	0.39552	1	0.80816	1	0.83287	1
14q gain	44 (17%)	220	0.15319	1	0.33718	1	0.37847	1	0.1496	1	0.03853	1	0.23437	1	1	1	0.04222	1	0.53116	1	0.92323	1
15q gain	24 (9%)	240	0.0072599	1	0.076499	1	0.71528	1	0.80378	1	0.65524	1	0.22967	1	0.30763	1	0.75434	1	1	1	0.84362	1
16p gain	42 (16%)	222	0.16579	1	0.80364	1	0.37424	1	0.34124	1	0.63494	1	0.46735	1	0.22158	1	0.4181	1	0.47426	1	0.85039	1
16q gain	52 (20%)	212	0.27125	1	0.6267	1	0.13474	1	0.13996	1	0.38058	1	0.13507	1	0.10198	1	0.087539	1	0.18971	1	0.54396	1
17p gain	35 (13%)	229	0.086909	1	0.39797	1	0.55001	1	0.875	1	0.73482	1	0.0414	1	0.00269	1	0.01382	1	0.00134	1	0.00341	1
17q gain	90 (34%)	174	2e-04	0.156	0.24927	1	0.49683	1	0.38765	1	0.14891	1	0.21962	1	0.11146	1	0.0028	1	0.00346	1	0.00458	1
18p gain	79 (30%)	185	0.02608	1	0.00303	1	0.95091	1	0.91161	1	0.19002	1	0.03901	1	0.66667	1	0.10205	1	0.74604	1	0.98262	1
18q gain	41 (16%)	223	0.40866	1	0.072279	1	0.3208	1	0.30215	1	0.67685	1	0.41766	1	0.52531	1	0.21811	1	0.5344	1	0.41369	1
19p gain	55 (21%)	209	0.0095799	1	0.04211	1	0.26702	1	0.42079	1	0.01769	1	0.099059	1	0.74589	1	0.03368	1	0.50171	1	0.061049	1
19q gain	90 (34%)	174	9.9999e-05	0.0781	0.0023	1	0.31954	1	0.54913	1	0.26726	1	0.25369	1	0.80576	1	0.0272	1	0.66915	1	0.064659	1
20p gain	131 (50%)	133	0.33062	1	0.43725	1	0.53927	1	0.04985	1	0.69431	1	0.02691	1	0.16844	1	0.04623	1	0.03911	1	0.17679	1
20q gain	147 (56%)	117	0.0089199	1	0.21336	1	0.39969	1	0.11707	1	0.9615	1	0.61505	1	0.14437	1	0.01294	1	0.16864	1	0.13408	1
21q gain	79 (30%)	185	9.9999e-06	0.008	6.9999e-05	0.0549	0.65313	1	0.40278	1	0.04726	1	0.00478	1	0.00214	1	0.0070099	1	0.0066499	1	0.00247	1
22q gain	36 (14%)	228	0.00298	1	0.0065999	1	0.41793	1	0.33681	1	0.0183	1	0.20813	1	0.19478	1	0.2024	1	0.40541	1	0.43768	1
xq gain	33 (12%)	231	0.01317	1	0.36614	1	0.70696	1	0.57411	1	0.91634	1	0.92232	1	0.52306	1	0.6688	1	0.42694	1	0.33786	1
1p loss	23 (9%)	241	0.34036	1	0.3047	1	0.10815	1	0.080989	1	0.52619	1	0.11134	1	0.64079	1	0.19551	1	0.88035	1	0.95914	1
1q loss	25 (9%)	239	0.72072	1	0.59761	1	0.40401	1	0.95622	1	0.43523	1	0.13201	1	0.52707	1	0.00247	1	1	1	0.77979	1
2p loss	27 (10%)	237	0.42392	1	0.10518	1	0.96082	1	0.7522	1	0.73185	1	0.25909	1	0.17876	1	0.93985	1	0.66484	1	0.29629	1
2q loss	58 (22%)	206	0.095429	1	0.35395	1	0.7479	1	0.54223	1	0.29248	1	0.14836	1	0.69897	1	0.04972	1	0.33221	1	0.097109	1
3p loss	31 (12%)	233	0.83205	1	0.04129	1	0.02226	1	0.02484	1	9.9999e-06	0.008	9.9999e-06	0.008	0.40333	1	0.13035	1	0.16475	1	0.10267	1
3q loss	13 (5%)	251	0.93504	1	0.17282	1	0.01888	1	0.052229	1	0.10007	1	0.01059	1	1	1	0.62114	1	1	1	0.74647	1
4p loss	86 (33%)	178	0.76317	1	0.8085	1	0.7425	1	0.78034	1	0.16108	1	0.02702	1	0.053979	1	0.48054	1	0.14582	1	0.071239	1
4q loss	91 (34%)	173	0.54548	1	0.37965	1	0.30368	1	0.34767	1	0.23814	1	0.12665	1	0.17006	1	0.47584	1	0.15826	1	0.076319	1
5p loss	40 (15%)	224	0.01738	1	0.01901	1	0.31605	1	0.66545	1	0.63422	1	0.04792	1	0.57636	1	0.90533	1	0.40403	1	1	1
5q loss	104 (39%)	160	0.00229	1	0.0055499	1	0.86048	1	0.34576	1	0.51724	1	0.078659	1	0.75004	1	0.1482	1	0.73773	1	0.17341	1
6p loss	64 (24%)	200	0.00229	1	0.01889	1	0.75454	1	0.82453	1	0.060629	1	0.01117	1	0.65452	1	0.00024	0.186	0.61557	1	0.01725	1
6q loss	97 (37%)	167	9.9999e-06	0.008	0.00465	1	0.83323	1	0.49099	1	0.22946	1	0.01297	1	0.80034	1	0.01248	1	0.942	1	0.2185	1
7p loss	11 (4%)	253	0.25676	1	0.97318	1	0.32224	1	0.86052	1	0.73996	1	0.71874	1	0.24987	1	0.11196	1	0.083219	1	0.19248	1
7q loss	16 (6%)	248	0.086219	1	0.76254	1	0.23109	1	0.67702	1	0.60974	1	1	1	0.25193	1	0.082509	1	0.69769	1	0.94225	1
8p loss	121 (46%)	143	5e-05	0.0393	0.00072999	0.56	0.21631	1	0.16989	1	0.051329	1	0.6104	1	0.01801	1	0.03062	1	0.04491	1	0.0421	1
8q loss	29 (11%)	235	0.23687	1	0.096299	1	0.49832	1	0.01071	1	0.00307	1	0.16887	1	0.03471	1	0.04363	1	0.00299	1	0.1371	1
9p loss	114 (43%)	150	9.9999e-06	0.008	0.1751	1	0.19255	1	0.060839	1	0.41881	1	0.00276	1	0.67106	1	0.34769	1	0.95832	1	1	1
9q loss	104 (39%)	160	9.9999e-06	0.008	0.01187	1	0.02789	1	0.0098999	1	0.0284	1	6.9999e-05	0.0549	0.97254	1	0.13671	1	0.56927	1	0.28538	1
10p loss	47 (18%)	217	0.50298	1	0.01299	1	0.91111	1	0.2645	1	0.0242	1	0.062699	1	0.31514	1	0.29276	1	0.56842	1	0.30504	1
10q loss	87 (33%)	177	0.00065999	0.507	0.0091399	1	0.56321	1	0.7298	1	0.04246	1	0.2926	1	0.2988	1	0.13341	1	0.26232	1	0.42034	1
11p loss	108 (41%)	156	9.9999e-06	0.008	9.9999e-06	0.008	0.18008	1	0.7481	1	0.00202	1	5e-04	0.385	0.11579	1	0.093879	1	0.0057399	1	0.074929	1
11q loss	81 (31%)	183	9.9999e-06	0.008	0.00132	1	0.057289	1	0.19867	1	0.0259	1	0.067949	1	0.51616	1	0.61048	1	0.081699	1	0.31703	1
12p loss	28 (11%)	236	0.22696	1	0.46178	1	0.94324	1	0.4723	1	0.39854	1	0.64566	1	0.37396	1	0.90308	1	0.69915	1	0.89192	1
12q loss	34 (13%)	230	0.58688	1	0.72793	1	0.3688	1	0.40853	1	0.97336	1	0.89132	1	0.48565	1	0.74069	1	0.91351	1	0.93794	1
13q loss	53 (20%)	211	0.00351	1	0.87202	1	0.01064	1	0.10277	1	0.094279	1	0.60876	1	1	1	0.01077	1	0.86054	1	0.25124	1
14q loss	75 (28%)	189	9.9999e-06	0.008	0.00039	0.301	0.070009	1	0.03751	1	0.055139	1	0.00037	0.286	0.01185	1	0.01409	1	0.02907	1	0.39595	1
15q loss	88 (33%)	176	0.0058799	1	0.00026	0.201	0.10722	1	0.31706	1	0.45168	1	0.070639	1	0.15245	1	4e-05	0.0315	0.092659	1	0.31077	1
16p loss	68 (26%)	196	0.069379	1	0.04408	1	0.65728	1	0.47684	1	0.6341	1	0.77807	1	0.77442	1	0.050679	1	0.70974	1	0.49947	1
16q loss	62 (23%)	202	0.02766	1	0.03646	1	0.22557	1	0.79204	1	0.56338	1	0.79902	1	0.3418	1	0.054349	1	0.57462	1	0.079469	1
17p loss	116 (44%)	148	9.9999e-06	0.008	0.41219	1	0.95689	1	0.72851	1	0.40779	1	0.096989	1	0.2644	1	0.096259	1	0.16415	1	0.45279	1
17q loss	27 (10%)	237	0.25796	1	0.27	1	0.97031	1	0.94193	1	0.86928	1	0.86398	1	0.8111	1	0.57104	1	0.8928	1	0.8257	1
18p loss	60 (23%)	204	0.01837	1	0.26464	1	0.46409	1	0.3719	1	0.65164	1	0.04095	1	0.59544	1	0.24035	1	0.58958	1	0.70795	1
18q loss	91 (34%)	173	0.04768	1	0.99529	1	0.68271	1	0.74317	1	0.89122	1	0.33835	1	0.0358	1	0.0092999	1	0.11637	1	0.11998	1
19p loss	67 (25%)	197	0.01163	1	0.19634	1	0.59611	1	0.39806	1	0.01425	1	0.17773	1	0.82808	1	0.03411	1	0.64315	1	0.28982	1
19q loss	41 (16%)	223	0.22132	1	0.61808	1	0.20523	1	0.096759	1	0.33533	1	0.67502	1	0.42156	1	0.52608	1	0.35709	1	0.23839	1
20p loss	23 (9%)	241	0.10061	1	0.03247	1	0.16518	1	0.03282	1	0.75714	1	0.46131	1	0.39362	1	0.84445	1	0.16732	1	0.79708	1
20q loss	9 (3%)	255	0.02778	1	0.44353	1	0.47878	1	0.34587	1	1	1	0.87275	1	0.63148	1	0.81707	1	1	1	0.52732	1
21q loss	44 (17%)	220	0.20425	1	0.01967	1	0.10571	1	0.29551	1	0.01958	1	0.02463	1	0.77031	1	0.39847	1	0.19444	1	0.48522	1
22q loss	102 (39%)	162	0.01458	1	0.01713	1	0.58118	1	0.01156	1	0.02941	1	0.17673	1	0.22181	1	0.03035	1	0.097629	1	0.088089	1
xq loss	50 (19%)	214	0.03137	1	0.00403	1	0.99476	1	0.71394	1	0.12453	1	0.76296	1	0.02846	1	0.85455	1	0.089619	1	0.398	1
