[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTBRCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/BRCA-TP/10667987/BRCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BRCA-TP/10013769/transformed.cor.cli.txt"

nPatients in clinical file=1065, in cluster file=1044, common to both=1044
[1]   69 1044
[1] "AMP PEAK  1(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          244                           800 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          244                           800 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          757                           287 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          757                           287 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        763                         281 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        763                         281 
[1] "AMP PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          197                           847 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                          197                           847 
[1] "AMP PEAK  5(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           331                            713 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           331                            713 
[1] "AMP PEAK  6(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          159                           885 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          159                           885 
[1] "AMP PEAK  7(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           382                            662 
  AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE 
                           382                            662 
[1] "AMP PEAK  8(6P23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        288                         756 
  AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE 
                        288                         756 
[1] "AMP PEAK  9(6Q21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        198                         846 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                        198                         846 
[1] "AMP PEAK 10(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           399                            645 
  AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE 
                           399                            645 
[1] "AMP PEAK 11(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           411                            633 
  AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE 
                           411                            633 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           663                            381 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                           663                            381 
[1] "AMP PEAK 13(10P15.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           294                            750 
  AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE 
                           294                            750 
[1] "AMP PEAK 14(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           146                            898 
  AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE 
                           146                            898 
[1] "AMP PEAK 15(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         217                          827 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                         217                          827 
[1] "AMP PEAK 16(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           386                            658 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                           386                            658 
[1] "AMP PEAK 17(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           258                            786 
  AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE 
                           258                            786 
[1] "AMP PEAK 18(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            277                             767 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            277                             767 
[1] "AMP PEAK 19(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         269                          775 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                         269                          775 
[1] "AMP PEAK 20(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         176                          868 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         176                          868 
[1] "AMP PEAK 21(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           213                            831 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           213                            831 
[1] "AMP PEAK 22(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           187                            857 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           187                            857 
[1] "AMP PEAK 23(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                         320                          724 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                         320                          724 
[1] "AMP PEAK 24(17Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE 
                           417                            627 
  AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE 
                           417                            627 
[1] "AMP PEAK 25(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE 
                            221                             823 
  AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE 
                            221                             823 
[1] "AMP PEAK 26(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         273                          771 
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         273                          771 
[1] "AMP PEAK 27(19Q13.42) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE 
                            268                             776 
  AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE 
                            268                             776 
[1] "AMP PEAK 28(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           535                            509 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           535                            509 
[1] "DEL PEAK  1(1P36.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           437                            607 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           437                            607 
[1] "DEL PEAK  2(1P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE 
                          345                           699 
  DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE 
                          345                           699 
[1] "DEL PEAK  3(2P25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE 
                          198                           846 
  DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE 
                          198                           846 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          310                           734 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                          310                           734 
[1] "DEL PEAK  5(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                           337                            707 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                           337                            707 
[1] "DEL PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                          330                           714 
  DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE 
                          330                           714 
[1] "DEL PEAK  7(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                          337                           707 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                          337                           707 
[1] "DEL PEAK  8(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                          272                           772 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                          272                           772 
[1] "DEL PEAK  9(5Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE 
                          264                           780 
  DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE 
                          264                           780 
[1] "DEL PEAK 10(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                          202                           842 
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                          202                           842 
[1] "DEL PEAK 11(6Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE 
                        341                         703 
  DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE 
                        341                         703 
[1] "DEL PEAK 12(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        362                         682 
  DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE 
                        362                         682 
[1] "DEL PEAK 13(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE 
                          134                           910 
  DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE 
                          134                           910 
[1] "DEL PEAK 14(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE 
                          195                           849 
  DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE 
                          195                           849 
[1] "DEL PEAK 15(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          542                           502 
  DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE 
                          542                           502 
[1] "DEL PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           199                            845 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           199                            845 
[1] "DEL PEAK 17(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        319                         725 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                        319                         725 
[1] "DEL PEAK 18(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          357                           687 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                          357                           687 
[1] "DEL PEAK 19(9Q21.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                           289                            755 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                           289                            755 
[1] "DEL PEAK 20(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE 
                          293                           751 
  DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE 
                          293                           751 
[1] "DEL PEAK 21(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                            313                             731 
  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                            313                             731 
[1] "DEL PEAK 22(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE 
                           311                            733 
  DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE 
                           311                            733 
[1] "DEL PEAK 23(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE 
                           302                            742 
  DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE 
                           302                            742 
[1] "DEL PEAK 24(11Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE 
                           233                            811 
  DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE 
                           233                            811 
[1] "DEL PEAK 25(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE 
                           534                            510 
  DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE 
                           534                            510 
[1] "DEL PEAK 26(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE 
                           177                            867 
  DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE 
                           177                            867 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           199                            845 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                           199                            845 
[1] "DEL PEAK 28(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            205                             839 
  DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE 
                            205                             839 
[1] "DEL PEAK 29(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           485                            559 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                           485                            559 
[1] "DEL PEAK 30(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           341                            703 
  DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE 
                           341                            703 
[1] "DEL PEAK 31(15Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           364                            680 
  DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE 
                           364                            680 
[1] "DEL PEAK 32(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           672                            372 
  DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE 
                           672                            372 
[1] "DEL PEAK 33(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         629                          415 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                         629                          415 
[1] "DEL PEAK 34(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            362                             682 
  DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE 
                            362                             682 
[1] "DEL PEAK 35(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         343                          701 
  DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE 
                         343                          701 
[1] "DEL PEAK 36(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           350                            694 
  DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE 
                           350                            694 
[1] "DEL PEAK 37(19Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            206                             838 
  DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE 
                            206                             838 
[1] "DEL PEAK 38(20P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         156                          888 
  DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE 
                         156                          888 
[1] "DEL PEAK 39(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           209                            835 
  DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE 
                           209                            835 
[1] "DEL PEAK 40(22Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE 
                           453                            591 
  DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE 
                           453                            591 
[1] "DEL PEAK 41(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE 
                            481                             563 
  DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE 
                            481                             563 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 1044 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 1044 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=8, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED        4      3     14     51     24     15
  AMP PEAK  1(1P22.3) WILD-TYPE     17     33    105     45     85     57
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  1(1P22.3) MUTATED        2      2
  AMP PEAK  1(1P22.3) WILD-TYPE     18     38
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          14                           105
  CLUS_4                          51                            45
  CLUS_5                          24                            85
  CLUS_6                          15                            57
  CLUS_7                           2                            18
  CLUS_8                           2                            38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       14     19     24     47     11
  AMP PEAK  1(1P22.3) WILD-TYPE     87    133     90     41     47
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          14                            87
  CLUS_2                          19                           133
  CLUS_3                          24                            90
  CLUS_4                          47                            41
  CLUS_5                          11                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       52     36     31    113     12
  AMP PEAK  1(1P22.3) WILD-TYPE    347    204     68    151     30
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          52                           347
  CLUS_2                          36                           204
  CLUS_3                          31                            68
  CLUS_4                         113                           151
  CLUS_5                          12                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       72     30     33     11     23
  AMP PEAK  1(1P22.3) WILD-TYPE     60    167    144     77    105
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          72                            60
  CLUS_2                          30                           167
  CLUS_3                          33                           144
  CLUS_4                          11                            77
  CLUS_5                          23                           105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       52     27     17
  AMP PEAK  1(1P22.3) WILD-TYPE     97    105    100
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          52                            97
  CLUS_2                          27                           105
  CLUS_3                          17                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       15     14     45     17      5
  AMP PEAK  1(1P22.3) WILD-TYPE     49     92     45     90     26
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          14                            92
  CLUS_3                          45                            45
  CLUS_4                          17                            90
  CLUS_5                           5                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       99     14     53     36     33      5
  AMP PEAK  1(1P22.3) WILD-TYPE     91    129    181    125    211     47
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P22.3) MUTATED        2
  AMP PEAK  1(1P22.3) WILD-TYPE     14
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          99                            91
  CLUS_2                          14                           129
  CLUS_3                          53                           181
  CLUS_4                          36                           125
  CLUS_5                          33                           211
  CLUS_6                           5                            47
  CLUS_7                           2                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       97     29     35     38     28     15
  AMP PEAK  1(1P22.3) WILD-TYPE     81    214    162    142    156     43
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          97                            81
  CLUS_2                          29                           214
  CLUS_3                          35                           162
  CLUS_4                          38                           142
  CLUS_5                          28                           156
  CLUS_6                          15                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       50     66    125
  AMP PEAK  1(1P22.3) WILD-TYPE    256    356    172
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          50                           256
  CLUS_2                          66                           356
  CLUS_3                         125                           172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P22.3) MUTATED       27     27     72     78     37
  AMP PEAK  1(1P22.3) WILD-TYPE    147    159    333     56     89
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          27                           147
  CLUS_2                          27                           159
  CLUS_3                          72                           333
  CLUS_4                          78                            56
  CLUS_5                          37                            89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P22.3) MUTATED       35     42     92
  AMP PEAK  1(1P22.3) WILD-TYPE    214    214    117
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          35                           214
  CLUS_2                          42                           214
  CLUS_3                          92                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P22.3) MUTATED       70      6     39     21     17     16
  AMP PEAK  1(1P22.3) WILD-TYPE     57     61    154    114    108     51
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          70                            57
  CLUS_2                           6                            61
  CLUS_3                          39                           154
  CLUS_4                          21                           114
  CLUS_5                          17                           108
  CLUS_6                          16                            51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       16     19     75     88     88     54
  AMP PEAK  2(1Q21.3) WILD-TYPE      5     17     44      8     21     18
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  2(1Q21.3) MUTATED       10     29
  AMP PEAK  2(1Q21.3) WILD-TYPE     10     11
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          16                             5
  CLUS_2                          19                            17
  CLUS_3                          75                            44
  CLUS_4                          88                             8
  CLUS_5                          88                            21
  CLUS_6                          54                            18
  CLUS_7                          10                            10
  CLUS_8                          29                            11
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       62    102     89     81     45
  AMP PEAK  2(1Q21.3) WILD-TYPE     39     50     25      7     13
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          62                            39
  CLUS_2                         102                            50
  CLUS_3                          89                            25
  CLUS_4                          81                             7
  CLUS_5                          45                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      245    177     97    207     31
  AMP PEAK  2(1Q21.3) WILD-TYPE    154     63      2     57     11
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         245                           154
  CLUS_2                         177                            63
  CLUS_3                          97                             2
  CLUS_4                         207                            57
  CLUS_5                          31                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      112    144    130     65     70
  AMP PEAK  2(1Q21.3) WILD-TYPE     20     53     47     23     58
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         112                            20
  CLUS_2                         144                            53
  CLUS_3                         130                            47
  CLUS_4                          65                            23
  CLUS_5                          70                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      120     96     79
  AMP PEAK  2(1Q21.3) WILD-TYPE     29     36     38
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         120                            29
  CLUS_2                          96                            36
  CLUS_3                          79                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       49     69     77     75     25
  AMP PEAK  2(1Q21.3) WILD-TYPE     15     37     13     32      6
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          49                            15
  CLUS_2                          69                            37
  CLUS_3                          77                            13
  CLUS_4                          75                            32
  CLUS_5                          25                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED      163     84    196    113    152     35
  AMP PEAK  2(1Q21.3) WILD-TYPE     27     59     38     48     92     17
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED       10
  AMP PEAK  2(1Q21.3) WILD-TYPE      6
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         163                            27
  CLUS_2                          84                            59
  CLUS_3                         196                            38
  CLUS_4                         113                            48
  CLUS_5                         152                            92
  CLUS_6                          35                            17
  CLUS_7                          10                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED      155    158    149    139    119     33
  AMP PEAK  2(1Q21.3) WILD-TYPE     23     85     48     41     65     25
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         155                            23
  CLUS_2                         158                            85
  CLUS_3                         149                            48
  CLUS_4                         139                            41
  CLUS_5                         119                            65
  CLUS_6                          33                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      206    298    236
  AMP PEAK  2(1Q21.3) WILD-TYPE    100    124     61
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         206                           100
  CLUS_2                         298                           124
  CLUS_3                         236                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED      117    112    301    120     90
  AMP PEAK  2(1Q21.3) WILD-TYPE     57     74    104     14     36
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         117                            57
  CLUS_2                         112                            74
  CLUS_3                         301                           104
  CLUS_4                         120                            14
  CLUS_5                          90                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED      171    171    162
  AMP PEAK  2(1Q21.3) WILD-TYPE     78     85     47
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         171                            78
  CLUS_2                         171                            85
  CLUS_3                         162                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED      105     41    142     82     90     44
  AMP PEAK  2(1Q21.3) WILD-TYPE     22     26     51     53     35     23
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         105                            22
  CLUS_2                          41                            26
  CLUS_3                         142                            51
  CLUS_4                          82                            53
  CLUS_5                          90                            35
  CLUS_6                          44                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(1Q44) MUTATED       16     20     69     78     91     57     11
  AMP PEAK  3(1Q44) WILD-TYPE      5     16     50     18     18     15      9
                             vv
clus                          CLUS_8
  AMP PEAK  3(1Q44) MUTATED       32
  AMP PEAK  3(1Q44) WILD-TYPE      8
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                           5
  CLUS_2                        20                          16
  CLUS_3                        69                          50
  CLUS_4                        78                          18
  CLUS_5                        91                          18
  CLUS_6                        57                          15
  CLUS_7                        11                           9
  CLUS_8                        32                           8
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       59    107     92     72     44
  AMP PEAK  3(1Q44) WILD-TYPE     42     45     22     16     14
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        59                          42
  CLUS_2                       107                          45
  CLUS_3                        92                          22
  CLUS_4                        72                          16
  CLUS_5                        44                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED      256    180     99    200     28
  AMP PEAK  3(1Q44) WILD-TYPE    143     60      0     64     14
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       256                         143
  CLUS_2                       180                          60
  CLUS_3                        99                           0
  CLUS_4                       200                          64
  CLUS_5                        28                          14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED      100    150    135     67     75
  AMP PEAK  3(1Q44) WILD-TYPE     32     47     42     21     53
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       100                          32
  CLUS_2                       150                          47
  CLUS_3                       135                          42
  CLUS_4                        67                          21
  CLUS_5                        75                          53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      111     95     84
  AMP PEAK  3(1Q44) WILD-TYPE     38     37     33
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       111                          38
  CLUS_2                        95                          37
  CLUS_3                        84                          33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       50     74     70     72     24
  AMP PEAK  3(1Q44) WILD-TYPE     14     32     20     35      7
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        50                          14
  CLUS_2                        74                          32
  CLUS_3                        70                          20
  CLUS_4                        72                          35
  CLUS_5                        24                           7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(1Q44) MUTATED      146     95    202    118    145     41     12
  AMP PEAK  3(1Q44) WILD-TYPE     44     48     32     43     99     11      4
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       146                          44
  CLUS_2                        95                          48
  CLUS_3                       202                          32
  CLUS_4                       118                          43
  CLUS_5                       145                          99
  CLUS_6                        41                          11
  CLUS_7                        12                           4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED      139    175    152    145    113     35
  AMP PEAK  3(1Q44) WILD-TYPE     39     68     45     35     71     23
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       139                          39
  CLUS_2                       175                          68
  CLUS_3                       152                          45
  CLUS_4                       145                          35
  CLUS_5                       113                          71
  CLUS_6                        35                          23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      227    304    216
  AMP PEAK  3(1Q44) WILD-TYPE     79    118     81
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       227                          79
  CLUS_2                       304                         118
  CLUS_3                       216                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED      130    118    304    104     91
  AMP PEAK  3(1Q44) WILD-TYPE     44     68    101     30     35
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       130                          44
  CLUS_2                       118                          68
  CLUS_3                       304                         101
  CLUS_4                       104                          30
  CLUS_5                        91                          35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED      170    189    157
  AMP PEAK  3(1Q44) WILD-TYPE     79     67     52
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       170                          79
  CLUS_2                       189                          67
  CLUS_3                       157                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1Q44) MUTATED       96     44    144     83    102     47
  AMP PEAK  3(1Q44) WILD-TYPE     31     23     49     52     23     20
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        96                          31
  CLUS_2                        44                          23
  CLUS_3                       144                          49
  CLUS_4                        83                          52
  CLUS_5                       102                          23
  CLUS_6                        47                          20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED        6      7     34     20     18     25
  AMP PEAK  4(3P25.1) WILD-TYPE     15     29     85     76     91     47
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  4(3P25.1) MUTATED        7      1
  AMP PEAK  4(3P25.1) WILD-TYPE     13     39
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           7                            29
  CLUS_3                          34                            85
  CLUS_4                          20                            76
  CLUS_5                          18                            91
  CLUS_6                          25                            47
  CLUS_7                           7                            13
  CLUS_8                           1                            39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       27     18     42     18     13
  AMP PEAK  4(3P25.1) WILD-TYPE     74    134     72     70     45
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          27                            74
  CLUS_2                          18                           134
  CLUS_3                          42                            72
  CLUS_4                          18                            70
  CLUS_5                          13                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       20     71     24     72     10
  AMP PEAK  4(3P25.1) WILD-TYPE    379    169     75    192     32
D4V3, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          20                           379
  CLUS_2                          71                           169
  CLUS_3                          24                            75
  CLUS_4                          72                           192
  CLUS_5                          10                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       34     19     38     10     14
  AMP PEAK  4(3P25.1) WILD-TYPE     98    178    139     78    114
D4V4, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          34                            98
  CLUS_2                          19                           178
  CLUS_3                          38                           139
  CLUS_4                          10                            78
  CLUS_5                          14                           114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED       42     29     23
  AMP PEAK  4(3P25.1) WILD-TYPE    107    103     94
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          42                           107
  CLUS_2                          29                           103
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       16     19     20     29     10
  AMP PEAK  4(3P25.1) WILD-TYPE     48     87     70     78     21
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          16                            48
  CLUS_2                          19                            87
  CLUS_3                          20                            70
  CLUS_4                          29                            78
  CLUS_5                          10                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       46      9     31     42     61      2
  AMP PEAK  4(3P25.1) WILD-TYPE    144    134    203    119    183     50
                               vv
clus                            CLUS_7
  AMP PEAK  4(3P25.1) MUTATED        5
  AMP PEAK  4(3P25.1) WILD-TYPE     11
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          46                           144
  CLUS_2                           9                           134
  CLUS_3                          31                           203
  CLUS_4                          42                           119
  CLUS_5                          61                           183
  CLUS_6                           2                            50
  CLUS_7                           5                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       43     19     22     58     41     13
  AMP PEAK  4(3P25.1) WILD-TYPE    135    224    175    122    143     45
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          43                           135
  CLUS_2                          19                           224
  CLUS_3                          22                           175
  CLUS_4                          58                           122
  CLUS_5                          41                           143
  CLUS_6                          13                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED       32     82     75
  AMP PEAK  4(3P25.1) WILD-TYPE    274    340    222
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          32                           274
  CLUS_2                          82                           340
  CLUS_3                          75                           222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P25.1) MUTATED       10     22     90     33     34
  AMP PEAK  4(3P25.1) WILD-TYPE    164    164    315    101     92
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          10                           164
  CLUS_2                          22                           164
  CLUS_3                          90                           315
  CLUS_4                          33                           101
  CLUS_5                          34                            92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P25.1) MUTATED       45     28     55
  AMP PEAK  4(3P25.1) WILD-TYPE    204    228    154
D4V11, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          45                           204
  CLUS_2                          28                           228
  CLUS_3                          55                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3P25.1) MUTATED       32      4     44     22      9     17
  AMP PEAK  4(3P25.1) WILD-TYPE     95     63    149    113    116     50
D4V12, multiclass
        clus
vv       AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE
  CLUS_1                          32                            95
  CLUS_2                           4                            63
  CLUS_3                          44                           149
  CLUS_4                          22                           113
  CLUS_5                           9                           116
  CLUS_6                          17                            50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED        5     11     41     58     19     34
  AMP PEAK  5(3Q26.32) WILD-TYPE     16     25     78     38     90     38
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  5(3Q26.32) MUTATED        9      4
  AMP PEAK  5(3Q26.32) WILD-TYPE     11     36
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           11                             25
  CLUS_3                           41                             78
  CLUS_4                           58                             38
  CLUS_5                           19                             90
  CLUS_6                           34                             38
  CLUS_7                            9                             11
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       29     29     57     53     13
  AMP PEAK  5(3Q26.32) WILD-TYPE     72    123     57     35     45
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           29                            123
  CLUS_3                           57                             57
  CLUS_4                           53                             35
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       36     95     29    161     10
  AMP PEAK  5(3Q26.32) WILD-TYPE    363    145     70    103     32
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           36                            363
  CLUS_2                           95                            145
  CLUS_3                           29                             70
  CLUS_4                          161                            103
  CLUS_5                           10                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       83     36     51     18     22
  AMP PEAK  5(3Q26.32) WILD-TYPE     49    161    126     70    106
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           83                             49
  CLUS_2                           36                            161
  CLUS_3                           51                            126
  CLUS_4                           18                             70
  CLUS_5                           22                            106
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED       76     36     30
  AMP PEAK  5(3Q26.32) WILD-TYPE     73     96     87
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           76                             73
  CLUS_2                           36                             96
  CLUS_3                           30                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       22     26     54     30     10
  AMP PEAK  5(3Q26.32) WILD-TYPE     42     80     36     77     21
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           22                             42
  CLUS_2                           26                             80
  CLUS_3                           54                             36
  CLUS_4                           30                             77
  CLUS_5                           10                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED      119     20     45     64     68      4
  AMP PEAK  5(3Q26.32) WILD-TYPE     71    123    189     97    176     48
                                vv
clus                             CLUS_7
  AMP PEAK  5(3Q26.32) MUTATED        8
  AMP PEAK  5(3Q26.32) WILD-TYPE      8
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          119                             71
  CLUS_2                           20                            123
  CLUS_3                           45                            189
  CLUS_4                           64                             97
  CLUS_5                           68                            176
  CLUS_6                            4                             48
  CLUS_7                            8                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED      112     30     35     74     52     25
  AMP PEAK  5(3Q26.32) WILD-TYPE     66    213    162    106    132     33
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          112                             66
  CLUS_2                           30                            213
  CLUS_3                           35                            162
  CLUS_4                           74                            106
  CLUS_5                           52                            132
  CLUS_6                           25                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED       46    115    161
  AMP PEAK  5(3Q26.32) WILD-TYPE    260    307    136
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           46                            260
  CLUS_2                          115                            307
  CLUS_3                          161                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(3Q26.32) MUTATED       17     41    120     83     61
  AMP PEAK  5(3Q26.32) WILD-TYPE    157    145    285     51     65
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           17                            157
  CLUS_2                           41                            145
  CLUS_3                          120                            285
  CLUS_4                           83                             51
  CLUS_5                           61                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.32) MUTATED       57     44    108
  AMP PEAK  5(3Q26.32) WILD-TYPE    192    212    101
D5V11, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           57                            192
  CLUS_2                           44                            212
  CLUS_3                          108                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.32) MUTATED       75      8     55     32     13     26
  AMP PEAK  5(3Q26.32) WILD-TYPE     52     59    138    103    112     41
D5V12, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           75                             52
  CLUS_2                            8                             59
  CLUS_3                           55                            138
  CLUS_4                           32                            103
  CLUS_5                           13                            112
  CLUS_6                           26                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED        4      3     32     19      3     18
  AMP PEAK  6(4Q13.3) WILD-TYPE     17     33     87     77    106     54
                               vv
clus                            CLUS_7 CLUS_8
  AMP PEAK  6(4Q13.3) MUTATED        4      3
  AMP PEAK  6(4Q13.3) WILD-TYPE     16     37
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          32                            87
  CLUS_4                          19                            77
  CLUS_5                           3                           106
  CLUS_6                          18                            54
  CLUS_7                           4                            16
  CLUS_8                           3                            37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       22     12     31     19      2
  AMP PEAK  6(4Q13.3) WILD-TYPE     79    140     83     69     56
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          22                            79
  CLUS_2                          12                           140
  CLUS_3                          31                            83
  CLUS_4                          19                            69
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       19     71      2     60      7
  AMP PEAK  6(4Q13.3) WILD-TYPE    380    169     97    204     35
D6V3, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          19                           380
  CLUS_2                          71                           169
  CLUS_3                           2                            97
  CLUS_4                          60                           204
  CLUS_5                           7                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED       32     15     37      5     11
  AMP PEAK  6(4Q13.3) WILD-TYPE    100    182    140     83    117
D6V4, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          32                           100
  CLUS_2                          15                           182
  CLUS_3                          37                           140
  CLUS_4                           5                            83
  CLUS_5                          11                           117
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       33     15     17
  AMP PEAK  6(4Q13.3) WILD-TYPE    116    117    100
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          33                           116
  CLUS_2                          15                           117
  CLUS_3                          17                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED        5     12     17     25      6
  AMP PEAK  6(4Q13.3) WILD-TYPE     59     94     73     82     25
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                          12                            94
  CLUS_3                          17                            73
  CLUS_4                          25                            82
  CLUS_5                           6                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED       40      7     13     35     58      2
  AMP PEAK  6(4Q13.3) WILD-TYPE    150    136    221    126    186     50
                               vv
clus                            CLUS_7
  AMP PEAK  6(4Q13.3) MUTATED        4
  AMP PEAK  6(4Q13.3) WILD-TYPE     12
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          40                           150
  CLUS_2                           7                           136
  CLUS_3                          13                           221
  CLUS_4                          35                           126
  CLUS_5                          58                           186
  CLUS_6                           2                            50
  CLUS_7                           4                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED       39     17      8     36     41     18
  AMP PEAK  6(4Q13.3) WILD-TYPE    139    226    189    144    143     40
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          39                           139
  CLUS_2                          17                           226
  CLUS_3                           8                           189
  CLUS_4                          36                           144
  CLUS_5                          41                           143
  CLUS_6                          18                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       24     64     69
  AMP PEAK  6(4Q13.3) WILD-TYPE    282    358    228
D6V9, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          24                           282
  CLUS_2                          64                           358
  CLUS_3                          69                           228
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(4Q13.3) MUTATED        6     22     63     30     36
  AMP PEAK  6(4Q13.3) WILD-TYPE    168    164    342    104     90
D6V10, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                           6                           168
  CLUS_2                          22                           164
  CLUS_3                          63                           342
  CLUS_4                          30                           104
  CLUS_5                          36                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(4Q13.3) MUTATED       38     19     47
  AMP PEAK  6(4Q13.3) WILD-TYPE    211    237    162
D6V11, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          38                           211
  CLUS_2                          19                           237
  CLUS_3                          47                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(4Q13.3) MUTATED       29      3     27     21      5     19
  AMP PEAK  6(4Q13.3) WILD-TYPE     98     64    166    114    120     48
D6V12, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          29                            98
  CLUS_2                           3                            64
  CLUS_3                          27                           166
  CLUS_4                          21                           114
  CLUS_5                           5                           120
  CLUS_6                          19                            48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED        8     13     43     46     32     32
  AMP PEAK  7(5P15.33) WILD-TYPE     13     23     76     50     77     40
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK  7(5P15.33) MUTATED       12      8
  AMP PEAK  7(5P15.33) WILD-TYPE      8     32
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                           13                             23
  CLUS_3                           43                             76
  CLUS_4                           46                             50
  CLUS_5                           32                             77
  CLUS_6                           32                             40
  CLUS_7                           12                              8
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       34     44     59     40     17
  AMP PEAK  7(5P15.33) WILD-TYPE     67    108     55     48     41
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           34                             67
  CLUS_2                           44                            108
  CLUS_3                           59                             55
  CLUS_4                           40                             48
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       64    116     52    136     14
  AMP PEAK  7(5P15.33) WILD-TYPE    335    124     47    128     28
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           64                            335
  CLUS_2                          116                            124
  CLUS_3                           52                             47
  CLUS_4                          136                            128
  CLUS_5                           14                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       69     55     76     25     30
  AMP PEAK  7(5P15.33) WILD-TYPE     63    142    101     63     98
D7V4, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           69                             63
  CLUS_2                           55                            142
  CLUS_3                           76                            101
  CLUS_4                           25                             63
  CLUS_5                           30                             98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       70     44     42
  AMP PEAK  7(5P15.33) WILD-TYPE     79     88     75
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           70                             79
  CLUS_2                           44                             88
  CLUS_3                           42                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       25     34     38     45     14
  AMP PEAK  7(5P15.33) WILD-TYPE     39     72     52     62     17
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           25                             39
  CLUS_2                           34                             72
  CLUS_3                           38                             52
  CLUS_4                           45                             62
  CLUS_5                           14                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       94     35     73     68     89     11
  AMP PEAK  7(5P15.33) WILD-TYPE     96    108    161     93    155     41
                                vv
clus                             CLUS_7
  AMP PEAK  7(5P15.33) MUTATED        9
  AMP PEAK  7(5P15.33) WILD-TYPE      7
D7V7, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           94                             96
  CLUS_2                           35                            108
  CLUS_3                           73                            161
  CLUS_4                           68                             93
  CLUS_5                           89                            155
  CLUS_6                           11                             41
  CLUS_7                            9                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       88     65     46     84     70     26
  AMP PEAK  7(5P15.33) WILD-TYPE     90    178    151     96    114     32
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           88                             90
  CLUS_2                           65                            178
  CLUS_3                           46                            151
  CLUS_4                           84                             96
  CLUS_5                           70                            114
  CLUS_6                           26                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       83    153    136
  AMP PEAK  7(5P15.33) WILD-TYPE    223    269    161
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           83                            223
  CLUS_2                          153                            269
  CLUS_3                          136                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5P15.33) MUTATED       37     59    152     64     60
  AMP PEAK  7(5P15.33) WILD-TYPE    137    127    253     70     66
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           37                            137
  CLUS_2                           59                            127
  CLUS_3                          152                            253
  CLUS_4                           64                             70
  CLUS_5                           60                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5P15.33) MUTATED       94     67     96
  AMP PEAK  7(5P15.33) WILD-TYPE    155    189    113
D7V11, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           94                            155
  CLUS_2                           67                            189
  CLUS_3                           96                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(5P15.33) MUTATED       60     15     83     44     26     29
  AMP PEAK  7(5P15.33) WILD-TYPE     67     52    110     91     99     38
D7V12, multiclass
        clus
vv       AMP PEAK  7(5P15.33) MUTATED AMP PEAK  7(5P15.33) WILD-TYPE
  CLUS_1                           60                             67
  CLUS_2                           15                             52
  CLUS_3                           83                            110
  CLUS_4                           44                             91
  CLUS_5                           26                             99
  CLUS_6                           29                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(6P23) MUTATED        3      7     30     49     18     28      9
  AMP PEAK  8(6P23) WILD-TYPE     18     29     89     47     91     44     11
                             vv
clus                          CLUS_8
  AMP PEAK  8(6P23) MUTATED        6
  AMP PEAK  8(6P23) WILD-TYPE     34
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                         3                          18
  CLUS_2                         7                          29
  CLUS_3                        30                          89
  CLUS_4                        49                          47
  CLUS_5                        18                          91
  CLUS_6                        28                          44
  CLUS_7                         9                          11
  CLUS_8                         6                          34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       22     28     48     45      7
  AMP PEAK  8(6P23) WILD-TYPE     79    124     66     43     51
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        22                          79
  CLUS_2                        28                         124
  CLUS_3                        48                          66
  CLUS_4                        45                          43
  CLUS_5                         7                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       26     80     23    146     13
  AMP PEAK  8(6P23) WILD-TYPE    373    160     76    118     29
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        26                         373
  CLUS_2                        80                         160
  CLUS_3                        23                          76
  CLUS_4                       146                         118
  CLUS_5                        13                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       74     29     59      7     23
  AMP PEAK  8(6P23) WILD-TYPE     58    168    118     81    105
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        74                          58
  CLUS_2                        29                         168
  CLUS_3                        59                         118
  CLUS_4                         7                          81
  CLUS_5                        23                         105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED       68     24     24
  AMP PEAK  8(6P23) WILD-TYPE     81    108     93
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        68                          81
  CLUS_2                        24                         108
  CLUS_3                        24                          93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       14     21     46     27      8
  AMP PEAK  8(6P23) WILD-TYPE     50     85     44     80     23
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        14                          50
  CLUS_2                        21                          85
  CLUS_3                        46                          44
  CLUS_4                        27                          80
  CLUS_5                         8                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(6P23) MUTATED      102     17     33     53     65      8      9
  AMP PEAK  8(6P23) WILD-TYPE     88    126    201    108    179     44      7
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                       102                          88
  CLUS_2                        17                         126
  CLUS_3                        33                         201
  CLUS_4                        53                         108
  CLUS_5                        65                         179
  CLUS_6                         8                          44
  CLUS_7                         9                           7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P23) MUTATED       93     38     18     78     42     18
  AMP PEAK  8(6P23) WILD-TYPE     85    205    179    102    142     40
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        93                          85
  CLUS_2                        38                         205
  CLUS_3                        18                         179
  CLUS_4                        78                         102
  CLUS_5                        42                         142
  CLUS_6                        18                          40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED       39     98    139
  AMP PEAK  8(6P23) WILD-TYPE    267    324    158
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        39                         267
  CLUS_2                        98                         324
  CLUS_3                       139                         158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P23) MUTATED       12     28    111     70     55
  AMP PEAK  8(6P23) WILD-TYPE    162    158    294     64     71
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        12                         162
  CLUS_2                        28                         158
  CLUS_3                       111                         294
  CLUS_4                        70                          64
  CLUS_5                        55                          71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P23) MUTATED       49     37     97
  AMP PEAK  8(6P23) WILD-TYPE    200    219    112
D8V11, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        49                         200
  CLUS_2                        37                         219
  CLUS_3                        97                         112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(6P23) MUTATED       62      7     50     29     12     23
  AMP PEAK  8(6P23) WILD-TYPE     65     60    143    106    113     44
D8V12, multiclass
        clus
vv       AMP PEAK  8(6P23) MUTATED AMP PEAK  8(6P23) WILD-TYPE
  CLUS_1                        62                          65
  CLUS_2                         7                          60
  CLUS_3                        50                         143
  CLUS_4                        29                         106
  CLUS_5                        12                         113
  CLUS_6                        23                          44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  9(6Q21) MUTATED        4      1     11     42     11     24      9
  AMP PEAK  9(6Q21) WILD-TYPE     17     35    108     54     98     48     11
                             vv
clus                          CLUS_8
  AMP PEAK  9(6Q21) MUTATED        2
  AMP PEAK  9(6Q21) WILD-TYPE     38
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         4                          17
  CLUS_2                         1                          35
  CLUS_3                        11                         108
  CLUS_4                        42                          54
  CLUS_5                        11                          98
  CLUS_6                        24                          48
  CLUS_7                         9                          11
  CLUS_8                         2                          38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       10     14     39     37      4
  AMP PEAK  9(6Q21) WILD-TYPE     91    138     75     51     54
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        10                          91
  CLUS_2                        14                         138
  CLUS_3                        39                          75
  CLUS_4                        37                          51
  CLUS_5                         4                          54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       23     22     17    131      5
  AMP PEAK  9(6Q21) WILD-TYPE    376    218     82    133     37
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        23                         376
  CLUS_2                        22                         218
  CLUS_3                        17                          82
  CLUS_4                       131                         133
  CLUS_5                         5                          37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED       61      9     31      6     20
  AMP PEAK  9(6Q21) WILD-TYPE     71    188    146     82    108
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        61                          71
  CLUS_2                         9                         188
  CLUS_3                        31                         146
  CLUS_4                         6                          82
  CLUS_5                        20                         108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       55     11     16
  AMP PEAK  9(6Q21) WILD-TYPE     94    121    101
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        55                          94
  CLUS_2                        11                         121
  CLUS_3                        16                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED        6     15     38     16      7
  AMP PEAK  9(6Q21) WILD-TYPE     58     91     52     91     24
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         6                          58
  CLUS_2                        15                          91
  CLUS_3                        38                          52
  CLUS_4                        16                          91
  CLUS_5                         7                          24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  9(6Q21) MUTATED       88      9     20     44     26      4      6
  AMP PEAK  9(6Q21) WILD-TYPE    102    134    214    117    218     48     10
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        88                         102
  CLUS_2                         9                         134
  CLUS_3                        20                         214
  CLUS_4                        44                         117
  CLUS_5                        26                         218
  CLUS_6                         4                          48
  CLUS_7                         6                          10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       81     13     10     53     21     19
  AMP PEAK  9(6Q21) WILD-TYPE     97    230    187    127    163     39
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        81                          97
  CLUS_2                        13                         230
  CLUS_3                        10                         187
  CLUS_4                        53                         127
  CLUS_5                        21                         163
  CLUS_6                        19                          39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       19     50    119
  AMP PEAK  9(6Q21) WILD-TYPE    287    372    178
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        19                         287
  CLUS_2                        50                         372
  CLUS_3                       119                         178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q21) MUTATED        8      7     63     58     52
  AMP PEAK  9(6Q21) WILD-TYPE    166    179    342     76     74
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                         8                         166
  CLUS_2                         7                         179
  CLUS_3                        63                         342
  CLUS_4                        58                          76
  CLUS_5                        52                          74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q21) MUTATED       29     16     86
  AMP PEAK  9(6Q21) WILD-TYPE    220    240    123
D9V11, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        29                         220
  CLUS_2                        16                         240
  CLUS_3                        86                         123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6Q21) MUTATED       58      2     30     10      6     25
  AMP PEAK  9(6Q21) WILD-TYPE     69     65    163    125    119     42
D9V12, multiclass
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  CLUS_1                        58                          69
  CLUS_2                         2                          65
  CLUS_3                        30                         163
  CLUS_4                        10                         125
  CLUS_5                         6                         119
  CLUS_6                        25                          42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       11     18     74     33     36     23
  AMP PEAK 10(8P11.23) WILD-TYPE     10     18     45     63     73     49
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 10(8P11.23) MUTATED        5      9
  AMP PEAK 10(8P11.23) WILD-TYPE     15     31
D10V1, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           18                             18
  CLUS_3                           74                             45
  CLUS_4                           33                             63
  CLUS_5                           36                             73
  CLUS_6                           23                             49
  CLUS_7                            5                             15
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       64     62     41     30     12
  AMP PEAK 10(8P11.23) WILD-TYPE     37     90     73     58     46
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           64                             37
  CLUS_2                           62                             90
  CLUS_3                           41                             73
  CLUS_4                           30                             58
  CLUS_5                           12                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED      110    129     41     78     41
  AMP PEAK 10(8P11.23) WILD-TYPE    289    111     58    186      1
D10V3, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          110                            289
  CLUS_2                          129                            111
  CLUS_3                           41                             58
  CLUS_4                           78                            186
  CLUS_5                           41                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       47     66     92     32     35
  AMP PEAK 10(8P11.23) WILD-TYPE     85    131     85     56     93
D10V4, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           47                             85
  CLUS_2                           66                            131
  CLUS_3                           92                             85
  CLUS_4                           32                             56
  CLUS_5                           35                             93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED       52     53     58
  AMP PEAK 10(8P11.23) WILD-TYPE     97     79     59
D10V5, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           52                             97
  CLUS_2                           53                             79
  CLUS_3                           58                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       28     47     32     54      2
  AMP PEAK 10(8P11.23) WILD-TYPE     36     59     58     53     29
D10V6, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           28                             36
  CLUS_2                           47                             59
  CLUS_3                           32                             58
  CLUS_4                           54                             53
  CLUS_5                            2                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       62     51     71     44    149     13
  AMP PEAK 10(8P11.23) WILD-TYPE    128     92    163    117     95     39
                                vv
clus                             CLUS_7
  AMP PEAK 10(8P11.23) MUTATED        6
  AMP PEAK 10(8P11.23) WILD-TYPE     10
D10V7, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           62                            128
  CLUS_2                           51                             92
  CLUS_3                           71                            163
  CLUS_4                           44                            117
  CLUS_5                          149                             95
  CLUS_6                           13                             39
  CLUS_7                            6                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       57     81     51     77    116     14
  AMP PEAK 10(8P11.23) WILD-TYPE    121    162    146    103     68     44
D10V8, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           57                            121
  CLUS_2                           81                            162
  CLUS_3                           51                            146
  CLUS_4                           77                            103
  CLUS_5                          116                             68
  CLUS_6                           14                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED      113    172    108
  AMP PEAK 10(8P11.23) WILD-TYPE    193    250    189
D10V9, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                          113                            193
  CLUS_2                          172                            250
  CLUS_3                          108                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(8P11.23) MUTATED       58     77    170     44     44
  AMP PEAK 10(8P11.23) WILD-TYPE    116    109    235     90     82
D10V10, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           58                            116
  CLUS_2                           77                            109
  CLUS_3                          170                            235
  CLUS_4                           44                             90
  CLUS_5                           44                             82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(8P11.23) MUTATED       98     87     76
  AMP PEAK 10(8P11.23) WILD-TYPE    151    169    133
D10V11, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           98                            151
  CLUS_2                           87                            169
  CLUS_3                           76                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(8P11.23) MUTATED       39     21     78     62     38     23
  AMP PEAK 10(8P11.23) WILD-TYPE     88     46    115     73     87     44
D10V12, multiclass
        clus
vv       AMP PEAK 10(8P11.23) MUTATED AMP PEAK 10(8P11.23) WILD-TYPE
  CLUS_1                           39                             88
  CLUS_2                           21                             46
  CLUS_3                           78                            115
  CLUS_4                           62                             73
  CLUS_5                           38                             87
  CLUS_6                           23                             44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       11     13     60     44     39     27
  AMP PEAK 11(8P11.21) WILD-TYPE     10     23     59     52     70     45
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 11(8P11.21) MUTATED        7      9
  AMP PEAK 11(8P11.21) WILD-TYPE     13     31
D11V1, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           13                             23
  CLUS_3                           60                             59
  CLUS_4                           44                             52
  CLUS_5                           39                             70
  CLUS_6                           27                             45
  CLUS_7                            7                             13
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       54     57     45     40     14
  AMP PEAK 11(8P11.21) WILD-TYPE     47     95     69     48     44
D11V2, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           54                             47
  CLUS_2                           57                             95
  CLUS_3                           45                             69
  CLUS_4                           40                             48
  CLUS_5                           14                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED      103    115     44    107     42
  AMP PEAK 11(8P11.21) WILD-TYPE    296    125     55    157      0
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          103                            296
  CLUS_2                          115                            125
  CLUS_3                           44                             55
  CLUS_4                          107                            157
  CLUS_5                           42                              0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       71     65     81     28     38
  AMP PEAK 11(8P11.21) WILD-TYPE     61    132     96     60     90
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           71                             61
  CLUS_2                           65                            132
  CLUS_3                           81                             96
  CLUS_4                           28                             60
  CLUS_5                           38                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED       58     55     48
  AMP PEAK 11(8P11.21) WILD-TYPE     91     77     69
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           58                             91
  CLUS_2                           55                             77
  CLUS_3                           48                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       29     39     41     46      6
  AMP PEAK 11(8P11.21) WILD-TYPE     35     67     49     61     25
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                           39                             67
  CLUS_3                           41                             49
  CLUS_4                           46                             61
  CLUS_5                            6                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       97     42     76     46    130     11
  AMP PEAK 11(8P11.21) WILD-TYPE     93    101    158    115    114     41
                                vv
clus                             CLUS_7
  AMP PEAK 11(8P11.21) MUTATED        6
  AMP PEAK 11(8P11.21) WILD-TYPE     10
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           97                             93
  CLUS_2                           42                            101
  CLUS_3                           76                            158
  CLUS_4                           46                            115
  CLUS_5                          130                            114
  CLUS_6                           11                             41
  CLUS_7                            6                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       91     70     55     74    102     16
  AMP PEAK 11(8P11.21) WILD-TYPE     87    173    142    106     82     42
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           91                             87
  CLUS_2                           70                            173
  CLUS_3                           55                            142
  CLUS_4                           74                            106
  CLUS_5                          102                             82
  CLUS_6                           16                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED      102    165    135
  AMP PEAK 11(8P11.21) WILD-TYPE    204    257    162
D11V9, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                          102                            204
  CLUS_2                          165                            257
  CLUS_3                          135                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(8P11.21) MUTATED       51     75    159     72     45
  AMP PEAK 11(8P11.21) WILD-TYPE    123    111    246     62     81
D11V10, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           51                            123
  CLUS_2                           75                            111
  CLUS_3                          159                            246
  CLUS_4                           72                             62
  CLUS_5                           45                             81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8P11.21) MUTATED       82     84     99
  AMP PEAK 11(8P11.21) WILD-TYPE    167    172    110
D11V11, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           82                            167
  CLUS_2                           84                            172
  CLUS_3                           99                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8P11.21) MUTATED       64     15     66     63     31     26
  AMP PEAK 11(8P11.21) WILD-TYPE     63     52    127     72     94     41
D11V12, multiclass
        clus
vv       AMP PEAK 11(8P11.21) MUTATED AMP PEAK 11(8P11.21) WILD-TYPE
  CLUS_1                           64                             63
  CLUS_2                           15                             52
  CLUS_3                           66                            127
  CLUS_4                           63                             72
  CLUS_5                           31                             94
  CLUS_6                           26                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED       17     20     96     83     46     56
  AMP PEAK 12(8Q24.21) WILD-TYPE      4     16     23     13     63     16
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 12(8Q24.21) MUTATED       17     15
  AMP PEAK 12(8Q24.21) WILD-TYPE      3     25
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           17                              4
  CLUS_2                           20                             16
  CLUS_3                           96                             23
  CLUS_4                           83                             13
  CLUS_5                           46                             63
  CLUS_6                           56                             16
  CLUS_7                           17                              3
  CLUS_8                           15                             25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       84     83     92     75     16
  AMP PEAK 12(8Q24.21) WILD-TYPE     17     69     22     13     42
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           84                             17
  CLUS_2                           83                             69
  CLUS_3                           92                             22
  CLUS_4                           75                             13
  CLUS_5                           16                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED      144    191     48    239     41
  AMP PEAK 12(8Q24.21) WILD-TYPE    255     49     51     25      1
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          144                            255
  CLUS_2                          191                             49
  CLUS_3                           48                             51
  CLUS_4                          239                             25
  CLUS_5                           41                              1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED      120     82    125     39     68
  AMP PEAK 12(8Q24.21) WILD-TYPE     12    115     52     49     60
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          120                             12
  CLUS_2                           82                            115
  CLUS_3                          125                             52
  CLUS_4                           39                             49
  CLUS_5                           68                             60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      126     71     76
  AMP PEAK 12(8Q24.21) WILD-TYPE     23     61     41
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          126                             23
  CLUS_2                           71                             61
  CLUS_3                           76                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       34     57     78     79     25
  AMP PEAK 12(8Q24.21) WILD-TYPE     30     49     12     28      6
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           34                             30
  CLUS_2                           57                             49
  CLUS_3                           78                             12
  CLUS_4                           79                             28
  CLUS_5                           25                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED      169     66     94    114    184     19
  AMP PEAK 12(8Q24.21) WILD-TYPE     21     77    140     47     60     33
                                vv
clus                             CLUS_7
  AMP PEAK 12(8Q24.21) MUTATED       13
  AMP PEAK 12(8Q24.21) WILD-TYPE      3
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          169                             21
  CLUS_2                           66                             77
  CLUS_3                           94                            140
  CLUS_4                          114                             47
  CLUS_5                          184                             60
  CLUS_6                           19                             33
  CLUS_7                           13                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED      159    108     72    139    138     43
  AMP PEAK 12(8Q24.21) WILD-TYPE     19    135    125     41     46     15
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          159                             19
  CLUS_2                          108                            135
  CLUS_3                           72                            125
  CLUS_4                          139                             41
  CLUS_5                          138                             46
  CLUS_6                           43                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      134    255    259
  AMP PEAK 12(8Q24.21) WILD-TYPE    172    167     38
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          134                            172
  CLUS_2                          255                            167
  CLUS_3                          259                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q24.21) MUTATED       59     95    268    123    103
  AMP PEAK 12(8Q24.21) WILD-TYPE    115     91    137     11     23
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                           59                            115
  CLUS_2                           95                             91
  CLUS_3                          268                            137
  CLUS_4                          123                             11
  CLUS_5                          103                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q24.21) MUTATED      139    109    184
  AMP PEAK 12(8Q24.21) WILD-TYPE    110    147     25
D12V11, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          139                            110
  CLUS_2                          109                            147
  CLUS_3                          184                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(8Q24.21) MUTATED      113     23    122     79     39     56
  AMP PEAK 12(8Q24.21) WILD-TYPE     14     44     71     56     86     11
D12V12, multiclass
        clus
vv       AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE
  CLUS_1                          113                             14
  CLUS_2                           23                             44
  CLUS_3                          122                             71
  CLUS_4                           79                             56
  CLUS_5                           39                             86
  CLUS_6                           56                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(10P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED        6      4     26     67     12     33
  AMP PEAK 13(10P15.1) WILD-TYPE     15     32     93     29     97     39
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 13(10P15.1) MUTATED        6      7
  AMP PEAK 13(10P15.1) WILD-TYPE     14     33
D13V1, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                            6                             15
  CLUS_2                            4                             32
  CLUS_3                           26                             93
  CLUS_4                           67                             29
  CLUS_5                           12                             97
  CLUS_6                           33                             39
  CLUS_7                            6                             14
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       16     22     53     63      7
  AMP PEAK 13(10P15.1) WILD-TYPE     85    130     61     25     51
D13V2, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           16                             85
  CLUS_2                           22                            130
  CLUS_3                           53                             61
  CLUS_4                           63                             25
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       33     67     19    166      9
  AMP PEAK 13(10P15.1) WILD-TYPE    366    173     80     98     33
D13V3, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           33                            366
  CLUS_2                           67                            173
  CLUS_3                           19                             80
  CLUS_4                          166                             98
  CLUS_5                            9                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       88     16     45      9     31
  AMP PEAK 13(10P15.1) WILD-TYPE     44    181    132     79     97
D13V4, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           88                             44
  CLUS_2                           16                            181
  CLUS_3                           45                            132
  CLUS_4                            9                             79
  CLUS_5                           31                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED       78     22     29
  AMP PEAK 13(10P15.1) WILD-TYPE     71    110     88
D13V5, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           78                             71
  CLUS_2                           22                            110
  CLUS_3                           29                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED        8     24     61     27      9
  AMP PEAK 13(10P15.1) WILD-TYPE     56     82     29     80     22
D13V6, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                           24                             82
  CLUS_3                           61                             29
  CLUS_4                           27                             80
  CLUS_5                            9                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED      122     17     26     58     56      8
  AMP PEAK 13(10P15.1) WILD-TYPE     68    126    208    103    188     44
                                vv
clus                             CLUS_7
  AMP PEAK 13(10P15.1) MUTATED        7
  AMP PEAK 13(10P15.1) WILD-TYPE      9
D13V7, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                          122                             68
  CLUS_2                           17                            126
  CLUS_3                           26                            208
  CLUS_4                           58                            103
  CLUS_5                           56                            188
  CLUS_6                            8                             44
  CLUS_7                            7                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED      121     29     14     64     41     25
  AMP PEAK 13(10P15.1) WILD-TYPE     57    214    183    116    143     33
D13V8, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                          121                             57
  CLUS_2                           29                            214
  CLUS_3                           14                            183
  CLUS_4                           64                            116
  CLUS_5                           41                            143
  CLUS_6                           25                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED       42     80    164
  AMP PEAK 13(10P15.1) WILD-TYPE    264    342    133
D13V9, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           42                            264
  CLUS_2                           80                            342
  CLUS_3                          164                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(10P15.1) MUTATED       11     20    101     90     64
  AMP PEAK 13(10P15.1) WILD-TYPE    163    166    304     44     62
D13V10, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           11                            163
  CLUS_2                           20                            166
  CLUS_3                          101                            304
  CLUS_4                           90                             44
  CLUS_5                           64                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(10P15.1) MUTATED       45     34    111
  AMP PEAK 13(10P15.1) WILD-TYPE    204    222     98
D13V11, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           45                            204
  CLUS_2                           34                            222
  CLUS_3                          111                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(10P15.1) MUTATED       81      7     39     24     10     29
  AMP PEAK 13(10P15.1) WILD-TYPE     46     60    154    111    115     38
D13V12, multiclass
        clus
vv       AMP PEAK 13(10P15.1) MUTATED AMP PEAK 13(10P15.1) WILD-TYPE
  CLUS_1                           81                             46
  CLUS_2                            7                             60
  CLUS_3                           39                            154
  CLUS_4                           24                            111
  CLUS_5                           10                            115
  CLUS_6                           29                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED        6      3     16     18      9     23
  AMP PEAK 14(10Q22.3) WILD-TYPE     15     33    103     78    100     49
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 14(10Q22.3) MUTATED        8      3
  AMP PEAK 14(10Q22.3) WILD-TYPE     12     37
D14V1, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                            6                             15
  CLUS_2                            3                             33
  CLUS_3                           16                            103
  CLUS_4                           18                             78
  CLUS_5                            9                            100
  CLUS_6                           23                             49
  CLUS_7                            8                             12
  CLUS_8                            3                             37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       11     17     36     17      5
  AMP PEAK 14(10Q22.3) WILD-TYPE     90    135     78     71     53
D14V2, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           11                             90
  CLUS_2                           17                            135
  CLUS_3                           36                             78
  CLUS_4                           17                             71
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       21     39     15     65      6
  AMP PEAK 14(10Q22.3) WILD-TYPE    378    201     84    199     36
D14V3, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           21                            378
  CLUS_2                           39                            201
  CLUS_3                           15                             84
  CLUS_4                           65                            199
  CLUS_5                            6                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED       29     15     26      8     13
  AMP PEAK 14(10Q22.3) WILD-TYPE    103    182    151     80    115
D14V4, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           29                            103
  CLUS_2                           15                            182
  CLUS_3                           26                            151
  CLUS_4                            8                             80
  CLUS_5                           13                            115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       38     14     19
  AMP PEAK 14(10Q22.3) WILD-TYPE    111    118     98
D14V5, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           38                            111
  CLUS_2                           14                            118
  CLUS_3                           19                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED        9     17     21     17      7
  AMP PEAK 14(10Q22.3) WILD-TYPE     55     89     69     90     24
D14V6, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           17                             89
  CLUS_3                           21                             69
  CLUS_4                           17                             90
  CLUS_5                            7                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED       33     10     20     41     30      4
  AMP PEAK 14(10Q22.3) WILD-TYPE    157    133    214    120    214     48
                                vv
clus                             CLUS_7
  AMP PEAK 14(10Q22.3) MUTATED        8
  AMP PEAK 14(10Q22.3) WILD-TYPE      8
D14V7, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           33                            157
  CLUS_2                           10                            133
  CLUS_3                           20                            214
  CLUS_4                           41                            120
  CLUS_5                           30                            214
  CLUS_6                            4                             48
  CLUS_7                            8                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED       30     15     13     46     26     16
  AMP PEAK 14(10Q22.3) WILD-TYPE    148    228    184    134    158     42
D14V8, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           30                            148
  CLUS_2                           15                            228
  CLUS_3                           13                            184
  CLUS_4                           46                            134
  CLUS_5                           26                            158
  CLUS_6                           16                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       26     57     59
  AMP PEAK 14(10Q22.3) WILD-TYPE    280    365    238
D14V9, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           26                            280
  CLUS_2                           57                            365
  CLUS_3                           59                            238
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(10Q22.3) MUTATED        9     12     70     23     28
  AMP PEAK 14(10Q22.3) WILD-TYPE    165    174    335    111     98
D14V10, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                            9                            165
  CLUS_2                           12                            174
  CLUS_3                           70                            335
  CLUS_4                           23                            111
  CLUS_5                           28                             98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(10Q22.3) MUTATED       36     18     40
  AMP PEAK 14(10Q22.3) WILD-TYPE    213    238    169
D14V11, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           36                            213
  CLUS_2                           18                            238
  CLUS_3                           40                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(10Q22.3) MUTATED       19      4     34     12      6     19
  AMP PEAK 14(10Q22.3) WILD-TYPE    108     63    159    123    119     48
D14V12, multiclass
        clus
vv       AMP PEAK 14(10Q22.3) MUTATED AMP PEAK 14(10Q22.3) WILD-TYPE
  CLUS_1                           19                            108
  CLUS_2                            4                             63
  CLUS_3                           34                            159
  CLUS_4                           12                            123
  CLUS_5                            6                            119
  CLUS_6                           19                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(11P13) MUTATED        5      8     33     27     15     18      5
  AMP PEAK 15(11P13) WILD-TYPE     16     28     86     69     94     54     15
                              vv
clus                           CLUS_8
  AMP PEAK 15(11P13) MUTATED        6
  AMP PEAK 15(11P13) WILD-TYPE     34
D15V1, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                          5                           16
  CLUS_2                          8                           28
  CLUS_3                         33                           86
  CLUS_4                         27                           69
  CLUS_5                         15                           94
  CLUS_6                         18                           54
  CLUS_7                          5                           15
  CLUS_8                          6                           34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       28     26     34     25      4
  AMP PEAK 15(11P13) WILD-TYPE     73    126     80     63     54
D15V2, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         28                           73
  CLUS_2                         26                          126
  CLUS_3                         34                           80
  CLUS_4                         25                           63
  CLUS_5                          4                           54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       32     73     17     87      8
  AMP PEAK 15(11P13) WILD-TYPE    367    167     82    177     34
D15V3, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         32                          367
  CLUS_2                         73                          167
  CLUS_3                         17                           82
  CLUS_4                         87                          177
  CLUS_5                          8                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       42     37     35     11     20
  AMP PEAK 15(11P13) WILD-TYPE     90    160    142     77    108
D15V4, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         42                           90
  CLUS_2                         37                          160
  CLUS_3                         35                          142
  CLUS_4                         11                           77
  CLUS_5                         20                          108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED       45     24     27
  AMP PEAK 15(11P13) WILD-TYPE    104    108     90
D15V5, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         45                          104
  CLUS_2                         24                          108
  CLUS_3                         27                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED        7     25     28     28      8
  AMP PEAK 15(11P13) WILD-TYPE     57     81     62     79     23
D15V6, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                          7                           57
  CLUS_2                         25                           81
  CLUS_3                         28                           62
  CLUS_4                         28                           79
  CLUS_5                          8                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(11P13) MUTATED       61     13     27     38     66      9      3
  AMP PEAK 15(11P13) WILD-TYPE    129    130    207    123    178     43     13
D15V7, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         61                          129
  CLUS_2                         13                          130
  CLUS_3                         27                          207
  CLUS_4                         38                          123
  CLUS_5                         66                          178
  CLUS_6                          9                           43
  CLUS_7                          3                           13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11P13) MUTATED       59     35     14     51     49      9
  AMP PEAK 15(11P13) WILD-TYPE    119    208    183    129    135     49
D15V8, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         59                          119
  CLUS_2                         35                          208
  CLUS_3                         14                          183
  CLUS_4                         51                          129
  CLUS_5                         49                          135
  CLUS_6                          9                           49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED       32     88     94
  AMP PEAK 15(11P13) WILD-TYPE    274    334    203
D15V9, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         32                          274
  CLUS_2                         88                          334
  CLUS_3                         94                          203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11P13) MUTATED       10     31     92     39     42
  AMP PEAK 15(11P13) WILD-TYPE    164    155    313     95     84
D15V10, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         10                          164
  CLUS_2                         31                          155
  CLUS_3                         92                          313
  CLUS_4                         39                           95
  CLUS_5                         42                           84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11P13) MUTATED       50     25     61
  AMP PEAK 15(11P13) WILD-TYPE    199    231    148
D15V11, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         50                          199
  CLUS_2                         25                          231
  CLUS_3                         61                          148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11P13) MUTATED       41      5     49     21      8     12
  AMP PEAK 15(11P13) WILD-TYPE     86     62    144    114    117     55
D15V12, multiclass
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  CLUS_1                         41                           86
  CLUS_2                          5                           62
  CLUS_3                         49                          144
  CLUS_4                         21                          114
  CLUS_5                          8                          117
  CLUS_6                         12                           55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       13     18     62     28     33     37
  AMP PEAK 16(11Q13.3) WILD-TYPE      8     18     57     68     76     35
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 16(11Q13.3) MUTATED       11     13
  AMP PEAK 16(11Q13.3) WILD-TYPE      9     27
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           13                              8
  CLUS_2                           18                             18
  CLUS_3                           62                             57
  CLUS_4                           28                             68
  CLUS_5                           33                             76
  CLUS_6                           37                             35
  CLUS_7                           11                              9
  CLUS_8                           13                             27
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       55     57     68     24     11
  AMP PEAK 16(11Q13.3) WILD-TYPE     46     95     46     64     47
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           55                             46
  CLUS_2                           57                             95
  CLUS_3                           68                             46
  CLUS_4                           24                             64
  CLUS_5                           11                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       69    174     28    100     15
  AMP PEAK 16(11Q13.3) WILD-TYPE    330     66     71    164     27
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           69                            330
  CLUS_2                          174                             66
  CLUS_3                           28                             71
  CLUS_4                          100                            164
  CLUS_5                           15                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       48     60     95     22     25
  AMP PEAK 16(11Q13.3) WILD-TYPE     84    137     82     66    103
D16V4, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           48                             84
  CLUS_2                           60                            137
  CLUS_3                           95                             82
  CLUS_4                           22                             66
  CLUS_5                           25                            103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       62     56     50
  AMP PEAK 16(11Q13.3) WILD-TYPE     87     76     67
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           62                             87
  CLUS_2                           56                             76
  CLUS_3                           50                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       17     49     29     60     13
  AMP PEAK 16(11Q13.3) WILD-TYPE     47     57     61     47     18
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           49                             57
  CLUS_3                           29                             61
  CLUS_4                           60                             47
  CLUS_5                           13                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       61     40     55     69    136     16
  AMP PEAK 16(11Q13.3) WILD-TYPE    129    103    179     92    108     36
                                vv
clus                             CLUS_7
  AMP PEAK 16(11Q13.3) MUTATED        9
  AMP PEAK 16(11Q13.3) WILD-TYPE      7
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           61                            129
  CLUS_2                           40                            103
  CLUS_3                           55                            179
  CLUS_4                           69                             92
  CLUS_5                          136                            108
  CLUS_6                           16                             36
  CLUS_7                            9                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       58     71     36     93    108     20
  AMP PEAK 16(11Q13.3) WILD-TYPE    120    172    161     87     76     38
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           58                            120
  CLUS_2                           71                            172
  CLUS_3                           36                            161
  CLUS_4                           93                             87
  CLUS_5                          108                             76
  CLUS_6                           20                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       86    176    116
  AMP PEAK 16(11Q13.3) WILD-TYPE    220    246    181
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           86                            220
  CLUS_2                          176                            246
  CLUS_3                          116                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(11Q13.3) MUTATED       36     71    178     43     50
  AMP PEAK 16(11Q13.3) WILD-TYPE    138    115    227     91     76
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           36                            138
  CLUS_2                           71                            115
  CLUS_3                          178                            227
  CLUS_4                           43                             91
  CLUS_5                           50                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(11Q13.3) MUTATED       90     72     86
  AMP PEAK 16(11Q13.3) WILD-TYPE    159    184    123
D16V11, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           90                            159
  CLUS_2                           72                            184
  CLUS_3                           86                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(11Q13.3) MUTATED       48     13     76     59     28     24
  AMP PEAK 16(11Q13.3) WILD-TYPE     79     54    117     76     97     43
D16V12, multiclass
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  CLUS_1                           48                             79
  CLUS_2                           13                             54
  CLUS_3                           76                            117
  CLUS_4                           59                             76
  CLUS_5                           28                             97
  CLUS_6                           24                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       11     11     32     33     23     25
  AMP PEAK 17(11Q14.1) WILD-TYPE     10     25     87     63     86     47
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 17(11Q14.1) MUTATED        7      4
  AMP PEAK 17(11Q14.1) WILD-TYPE     13     36
D17V1, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           11                             10
  CLUS_2                           11                             25
  CLUS_3                           32                             87
  CLUS_4                           33                             63
  CLUS_5                           23                             86
  CLUS_6                           25                             47
  CLUS_7                            7                             13
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       30     36     45     30      5
  AMP PEAK 17(11Q14.1) WILD-TYPE     71    116     69     58     53
D17V2, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           36                            116
  CLUS_3                           45                             69
  CLUS_4                           30                             58
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       40     94     18     97      9
  AMP PEAK 17(11Q14.1) WILD-TYPE    359    146     81    167     33
D17V3, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           40                            359
  CLUS_2                           94                            146
  CLUS_3                           18                             81
  CLUS_4                           97                            167
  CLUS_5                            9                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       43     32     52     18     16
  AMP PEAK 17(11Q14.1) WILD-TYPE     89    165    125     70    112
D17V4, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           43                             89
  CLUS_2                           32                            165
  CLUS_3                           52                            125
  CLUS_4                           18                             70
  CLUS_5                           16                            112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED       52     30     34
  AMP PEAK 17(11Q14.1) WILD-TYPE     97    102     83
D17V5, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           52                             97
  CLUS_2                           30                            102
  CLUS_3                           34                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       13     31     31     29     12
  AMP PEAK 17(11Q14.1) WILD-TYPE     51     75     59     78     19
D17V6, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           31                             75
  CLUS_3                           31                             59
  CLUS_4                           29                             78
  CLUS_5                           12                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       64     24     34     49     75      7
  AMP PEAK 17(11Q14.1) WILD-TYPE    126    119    200    112    169     45
                                vv
clus                             CLUS_7
  AMP PEAK 17(11Q14.1) MUTATED        5
  AMP PEAK 17(11Q14.1) WILD-TYPE     11
D17V7, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           64                            126
  CLUS_2                           24                            119
  CLUS_3                           34                            200
  CLUS_4                           49                            112
  CLUS_5                           75                            169
  CLUS_6                            7                             45
  CLUS_7                            5                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       61     38     25     63     54     17
  AMP PEAK 17(11Q14.1) WILD-TYPE    117    205    172    117    130     41
D17V8, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           61                            117
  CLUS_2                           38                            205
  CLUS_3                           25                            172
  CLUS_4                           63                            117
  CLUS_5                           54                            130
  CLUS_6                           17                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED       45    104    103
  AMP PEAK 17(11Q14.1) WILD-TYPE    261    318    194
D17V9, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           45                            261
  CLUS_2                          104                            318
  CLUS_3                          103                            194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(11Q14.1) MUTATED       21     43    104     47     37
  AMP PEAK 17(11Q14.1) WILD-TYPE    153    143    301     87     89
D17V10, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           21                            153
  CLUS_2                           43                            143
  CLUS_3                          104                            301
  CLUS_4                           47                             87
  CLUS_5                           37                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(11Q14.1) MUTATED       55     38     70
  AMP PEAK 17(11Q14.1) WILD-TYPE    194    218    139
D17V11, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           55                            194
  CLUS_2                           38                            218
  CLUS_3                           70                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(11Q14.1) MUTATED       44     10     51     28     12     18
  AMP PEAK 17(11Q14.1) WILD-TYPE     83     57    142    107    113     49
D17V12, multiclass
        clus
vv       AMP PEAK 17(11Q14.1) MUTATED AMP PEAK 17(11Q14.1) WILD-TYPE
  CLUS_1                           44                             83
  CLUS_2                           10                             57
  CLUS_3                           51                            142
  CLUS_4                           28                            107
  CLUS_5                           12                            113
  CLUS_6                           18                             49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED        3      4     36     53     18     29
  AMP PEAK 18(12P13.33) WILD-TYPE     18     32     83     43     91     43
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 18(12P13.33) MUTATED        3      3
  AMP PEAK 18(12P13.33) WILD-TYPE     17     37
D18V1, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                             3                              18
  CLUS_2                             4                              32
  CLUS_3                            36                              83
  CLUS_4                            53                              43
  CLUS_5                            18                              91
  CLUS_6                            29                              43
  CLUS_7                             3                              17
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       30     16     44     49     10
  AMP PEAK 18(12P13.33) WILD-TYPE     71    136     70     39     48
D18V2, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            30                              71
  CLUS_2                            16                             136
  CLUS_3                            44                              70
  CLUS_4                            49                              39
  CLUS_5                            10                              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       19     83     29    135     11
  AMP PEAK 18(12P13.33) WILD-TYPE    380    157     70    129     31
D18V3, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            19                             380
  CLUS_2                            83                             157
  CLUS_3                            29                              70
  CLUS_4                           135                             129
  CLUS_5                            11                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       71     36     44     10     16
  AMP PEAK 18(12P13.33) WILD-TYPE     61    161    133     78    112
D18V4, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            71                              61
  CLUS_2                            36                             161
  CLUS_3                            44                             133
  CLUS_4                            10                              78
  CLUS_5                            16                             112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       71     30     19
  AMP PEAK 18(12P13.33) WILD-TYPE     78    102     98
D18V5, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            71                              78
  CLUS_2                            30                             102
  CLUS_3                            19                              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       15     15     47     33     10
  AMP PEAK 18(12P13.33) WILD-TYPE     49     91     43     74     21
D18V6, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                            15                              91
  CLUS_3                            47                              43
  CLUS_4                            33                              74
  CLUS_5                            10                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED      107     13     32     49     69      4
  AMP PEAK 18(12P13.33) WILD-TYPE     83    130    202    112    175     48
                                 vv
clus                              CLUS_7
  AMP PEAK 18(12P13.33) MUTATED        3
  AMP PEAK 18(12P13.33) WILD-TYPE     13
D18V7, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                           107                              83
  CLUS_2                            13                             130
  CLUS_3                            32                             202
  CLUS_4                            49                             112
  CLUS_5                            69                             175
  CLUS_6                             4                              48
  CLUS_7                             3                              13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED      101     29     22     60     51     14
  AMP PEAK 18(12P13.33) WILD-TYPE     77    214    175    120    133     44
D18V8, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                           101                              77
  CLUS_2                            29                             214
  CLUS_3                            22                             175
  CLUS_4                            60                             120
  CLUS_5                            51                             133
  CLUS_6                            14                              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       41     87    140
  AMP PEAK 18(12P13.33) WILD-TYPE    265    335    157
D18V9, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            41                             265
  CLUS_2                            87                             335
  CLUS_3                           140                             157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(12P13.33) MUTATED       14     28    104     76     46
  AMP PEAK 18(12P13.33) WILD-TYPE    160    158    301     58     80
D18V10, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            14                             160
  CLUS_2                            28                             158
  CLUS_3                           104                             301
  CLUS_4                            76                              58
  CLUS_5                            46                              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(12P13.33) MUTATED       41     35    101
  AMP PEAK 18(12P13.33) WILD-TYPE    208    221    108
D18V11, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            41                             208
  CLUS_2                            35                             221
  CLUS_3                           101                             108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(12P13.33) MUTATED       71      6     43     27     11     19
  AMP PEAK 18(12P13.33) WILD-TYPE     56     61    150    108    114     48
D18V12, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            71                              56
  CLUS_2                             6                              61
  CLUS_3                            43                             150
  CLUS_4                            27                             108
  CLUS_5                            11                             114
  CLUS_6                            19                              48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(12Q15) MUTATED        4      6     54     21     20     35      7
  AMP PEAK 19(12Q15) WILD-TYPE     17     30     65     75     89     37     13
                              vv
clus                           CLUS_8
  AMP PEAK 19(12Q15) MUTATED        6
  AMP PEAK 19(12Q15) WILD-TYPE     34
D19V1, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          4                           17
  CLUS_2                          6                           30
  CLUS_3                         54                           65
  CLUS_4                         21                           75
  CLUS_5                         20                           89
  CLUS_6                         35                           37
  CLUS_7                          7                           13
  CLUS_8                          6                           34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       43     24     56     18     12
  AMP PEAK 19(12Q15) WILD-TYPE     58    128     58     70     46
D19V2, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         43                           58
  CLUS_2                         24                          128
  CLUS_3                         56                           58
  CLUS_4                         18                           70
  CLUS_5                         12                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       29    130     32     68     10
  AMP PEAK 19(12Q15) WILD-TYPE    370    110     67    196     32
D19V3, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         29                          370
  CLUS_2                        130                          110
  CLUS_3                         32                           67
  CLUS_4                         68                          196
  CLUS_5                         10                           32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       24     50     61     13     20
  AMP PEAK 19(12Q15) WILD-TYPE    108    147    116     75    108
D19V4, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         24                          108
  CLUS_2                         50                          147
  CLUS_3                         61                          116
  CLUS_4                         13                           75
  CLUS_5                         20                          108
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       53     41     31
  AMP PEAK 19(12Q15) WILD-TYPE     96     91     86
D19V5, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         53                           96
  CLUS_2                         41                           91
  CLUS_3                         31                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       17     24     24     48     12
  AMP PEAK 19(12Q15) WILD-TYPE     47     82     66     59     19
D19V6, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         17                           47
  CLUS_2                         24                           82
  CLUS_3                         24                           66
  CLUS_4                         48                           59
  CLUS_5                         12                           19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(12Q15) MUTATED       31     17     42     61    102     11      4
  AMP PEAK 19(12Q15) WILD-TYPE    159    126    192    100    142     41     12
D19V7, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         31                          159
  CLUS_2                         17                          126
  CLUS_3                         42                          192
  CLUS_4                         61                          100
  CLUS_5                        102                          142
  CLUS_6                         11                           41
  CLUS_7                          4                           12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED       29     40     28     85     74     12
  AMP PEAK 19(12Q15) WILD-TYPE    149    203    169     95    110     46
D19V8, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         29                          149
  CLUS_2                         40                          203
  CLUS_3                         28                          169
  CLUS_4                         85                           95
  CLUS_5                         74                          110
  CLUS_6                         12                           46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       52    134     77
  AMP PEAK 19(12Q15) WILD-TYPE    254    288    220
D19V9, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         52                          254
  CLUS_2                        134                          288
  CLUS_3                         77                          220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(12Q15) MUTATED       20     44    141     21     37
  AMP PEAK 19(12Q15) WILD-TYPE    154    142    264    113     89
D19V10, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         20                          154
  CLUS_2                         44                          142
  CLUS_3                        141                          264
  CLUS_4                         21                          113
  CLUS_5                         37                           89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(12Q15) MUTATED       74     47     44
  AMP PEAK 19(12Q15) WILD-TYPE    175    209    165
D19V11, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         74                          175
  CLUS_2                         47                          209
  CLUS_3                         44                          165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(12Q15) MUTATED       17      7     69     39     16     17
  AMP PEAK 19(12Q15) WILD-TYPE    110     60    124     96    109     50
D19V12, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         17                          110
  CLUS_2                          7                           60
  CLUS_3                         69                          124
  CLUS_4                         39                           96
  CLUS_5                         16                          109
  CLUS_6                         17                           50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 20(13Q34) MUTATED        3      5     19     43     16     10      4
  AMP PEAK 20(13Q34) WILD-TYPE     18     31    100     53     93     62     16
                              vv
clus                           CLUS_8
  AMP PEAK 20(13Q34) MUTATED        0
  AMP PEAK 20(13Q34) WILD-TYPE     40
D20V1, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                          3                           18
  CLUS_2                          5                           31
  CLUS_3                         19                          100
  CLUS_4                         43                           53
  CLUS_5                         16                           93
  CLUS_6                         10                           62
  CLUS_7                          4                           16
  CLUS_8                          0                           40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       17     14     23     38      8
  AMP PEAK 20(13Q34) WILD-TYPE     84    138     91     50     50
D20V2, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         17                           84
  CLUS_2                         14                          138
  CLUS_3                         23                           91
  CLUS_4                         38                           50
  CLUS_5                          8                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       25     39     12     94      6
  AMP PEAK 20(13Q34) WILD-TYPE    374    201     87    170     36
D20V3, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         25                          374
  CLUS_2                         39                          201
  CLUS_3                         12                           87
  CLUS_4                         94                          170
  CLUS_5                          6                           36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       50     17     24      5     14
  AMP PEAK 20(13Q34) WILD-TYPE     82    180    153     83    114
D20V4, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         50                           82
  CLUS_2                         17                          180
  CLUS_3                         24                          153
  CLUS_4                          5                           83
  CLUS_5                         14                          114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       50     22     12
  AMP PEAK 20(13Q34) WILD-TYPE     99    110    105
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         50                           99
  CLUS_2                         22                          110
  CLUS_3                         12                          105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED       10      9     39     17      9
  AMP PEAK 20(13Q34) WILD-TYPE     54     97     51     90     22
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         10                           54
  CLUS_2                          9                           97
  CLUS_3                         39                           51
  CLUS_4                         17                           90
  CLUS_5                          9                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 20(13Q34) MUTATED       77      9     23     26     34      4      3
  AMP PEAK 20(13Q34) WILD-TYPE    113    134    211    135    210     48     13
D20V7, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         77                          113
  CLUS_2                          9                          134
  CLUS_3                         23                          211
  CLUS_4                         26                          135
  CLUS_5                         34                          210
  CLUS_6                          4                           48
  CLUS_7                          3                           13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q34) MUTATED       72     15     18     28     27     16
  AMP PEAK 20(13Q34) WILD-TYPE    106    228    179    152    157     42
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         72                          106
  CLUS_2                         15                          228
  CLUS_3                         18                          179
  CLUS_4                         28                          152
  CLUS_5                         27                          157
  CLUS_6                         16                           42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       28     43    102
  AMP PEAK 20(13Q34) WILD-TYPE    278    379    195
D20V9, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         28                          278
  CLUS_2                         43                          379
  CLUS_3                        102                          195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(13Q34) MUTATED        9     14     58     54     38
  AMP PEAK 20(13Q34) WILD-TYPE    165    172    347     80     88
D20V10, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                          9                          165
  CLUS_2                         14                          172
  CLUS_3                         58                          347
  CLUS_4                         54                           80
  CLUS_5                         38                           88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(13Q34) MUTATED       24     21     62
  AMP PEAK 20(13Q34) WILD-TYPE    225    235    147
D20V11, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         24                          225
  CLUS_2                         21                          235
  CLUS_3                         62                          147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(13Q34) MUTATED       44      2     20     20      6     15
  AMP PEAK 20(13Q34) WILD-TYPE     83     65    173    115    119     52
D20V12, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         44                           83
  CLUS_2                          2                           65
  CLUS_3                         20                          173
  CLUS_4                         20                          115
  CLUS_5                          6                          119
  CLUS_6                         15                           52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED        5      9     33     11     21     26
  AMP PEAK 21(14Q21.1) WILD-TYPE     16     27     86     85     88     46
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 21(14Q21.1) MUTATED        6      0
  AMP PEAK 21(14Q21.1) WILD-TYPE     14     40
D21V1, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            9                             27
  CLUS_3                           33                             86
  CLUS_4                           11                             85
  CLUS_5                           21                             88
  CLUS_6                           26                             46
  CLUS_7                            6                             14
  CLUS_8                            0                             40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       29     24     42      8      8
  AMP PEAK 21(14Q21.1) WILD-TYPE     72    128     72     80     50
D21V2, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           24                            128
  CLUS_3                           42                             72
  CLUS_4                            8                             80
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       34     92     25     52     10
  AMP PEAK 21(14Q21.1) WILD-TYPE    365    148     74    212     32
D21V3, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           34                            365
  CLUS_2                           92                            148
  CLUS_3                           25                             74
  CLUS_4                           52                            212
  CLUS_5                           10                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       17     33     55     12     15
  AMP PEAK 21(14Q21.1) WILD-TYPE    115    164    122     76    113
D21V4, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           17                            115
  CLUS_2                           33                            164
  CLUS_3                           55                            122
  CLUS_4                           12                             76
  CLUS_5                           15                            113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED       42     24     21
  AMP PEAK 21(14Q21.1) WILD-TYPE    107    108     96
D21V5, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           42                            107
  CLUS_2                           24                            108
  CLUS_3                           21                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       11     16     14     37      9
  AMP PEAK 21(14Q21.1) WILD-TYPE     53     90     76     70     22
D21V6, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           16                             90
  CLUS_3                           14                             76
  CLUS_4                           37                             70
  CLUS_5                            9                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       21     17     43     51     72      3
  AMP PEAK 21(14Q21.1) WILD-TYPE    169    126    191    110    172     49
                                vv
clus                             CLUS_7
  AMP PEAK 21(14Q21.1) MUTATED        4
  AMP PEAK 21(14Q21.1) WILD-TYPE     12
D21V7, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           21                            169
  CLUS_2                           17                            126
  CLUS_3                           43                            191
  CLUS_4                           51                            110
  CLUS_5                           72                            172
  CLUS_6                            3                             49
  CLUS_7                            4                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       17     27     31     73     46     17
  AMP PEAK 21(14Q21.1) WILD-TYPE    161    216    166    107    138     41
D21V8, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           17                            161
  CLUS_2                           27                            216
  CLUS_3                           31                            166
  CLUS_4                           73                            107
  CLUS_5                           46                            138
  CLUS_6                           17                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED       39    110     58
  AMP PEAK 21(14Q21.1) WILD-TYPE    267    312    239
D21V9, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           39                            267
  CLUS_2                          110                            312
  CLUS_3                           58                            239
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(14Q21.1) MUTATED       16     22    122     11     36
  AMP PEAK 21(14Q21.1) WILD-TYPE    158    164    283    123     90
D21V10, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           16                            158
  CLUS_2                           22                            164
  CLUS_3                          122                            283
  CLUS_4                           11                            123
  CLUS_5                           36                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(14Q21.1) MUTATED       59     43     40
  AMP PEAK 21(14Q21.1) WILD-TYPE    190    213    169
D21V11, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           59                            190
  CLUS_2                           43                            213
  CLUS_3                           40                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(14Q21.1) MUTATED       14      5     61     32     11     19
  AMP PEAK 21(14Q21.1) WILD-TYPE    113     62    132    103    114     48
D21V12, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           14                            113
  CLUS_2                            5                             62
  CLUS_3                           61                            132
  CLUS_4                           32                            103
  CLUS_5                           11                            114
  CLUS_6                           19                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED        3      8     31     32      4     16
  AMP PEAK 22(15Q26.3) WILD-TYPE     18     28     88     64    105     56
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 22(15Q26.3) MUTATED        8      2
  AMP PEAK 22(15Q26.3) WILD-TYPE     12     38
D22V1, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            8                             28
  CLUS_3                           31                             88
  CLUS_4                           32                             64
  CLUS_5                            4                            105
  CLUS_6                           16                             56
  CLUS_7                            8                             12
  CLUS_8                            2                             38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       23     23     25     30      3
  AMP PEAK 22(15Q26.3) WILD-TYPE     78    129     89     58     55
D22V2, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           23                             78
  CLUS_2                           23                            129
  CLUS_3                           25                             89
  CLUS_4                           30                             58
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       28     59      8     90      2
  AMP PEAK 22(15Q26.3) WILD-TYPE    371    181     91    174     40
D22V3, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           28                            371
  CLUS_2                           59                            181
  CLUS_3                            8                             91
  CLUS_4                           90                            174
  CLUS_5                            2                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED       36     19     27     14     17
  AMP PEAK 22(15Q26.3) WILD-TYPE     96    178    150     74    111
D22V4, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           36                             96
  CLUS_2                           19                            178
  CLUS_3                           27                            150
  CLUS_4                           14                             74
  CLUS_5                           17                            111
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       45     20     18
  AMP PEAK 22(15Q26.3) WILD-TYPE    104    112     99
D22V5, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           45                            104
  CLUS_2                           20                            112
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED        9     15     30     25      4
  AMP PEAK 22(15Q26.3) WILD-TYPE     55     91     60     82     27
D22V6, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           15                             91
  CLUS_3                           30                             60
  CLUS_4                           25                             82
  CLUS_5                            4                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED       63     15     19     27     56      3
  AMP PEAK 22(15Q26.3) WILD-TYPE    127    128    215    134    188     49
                                vv
clus                             CLUS_7
  AMP PEAK 22(15Q26.3) MUTATED        3
  AMP PEAK 22(15Q26.3) WILD-TYPE     13
D22V7, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           63                            127
  CLUS_2                           15                            128
  CLUS_3                           19                            215
  CLUS_4                           27                            134
  CLUS_5                           56                            188
  CLUS_6                            3                             49
  CLUS_7                            3                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED       60     21     18     34     46      7
  AMP PEAK 22(15Q26.3) WILD-TYPE    118    222    179    146    138     51
D22V8, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           60                            118
  CLUS_2                           21                            222
  CLUS_3                           18                            179
  CLUS_4                           34                            146
  CLUS_5                           46                            138
  CLUS_6                            7                             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       33     64     83
  AMP PEAK 22(15Q26.3) WILD-TYPE    273    358    214
D22V9, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           33                            273
  CLUS_2                           64                            358
  CLUS_3                           83                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(15Q26.3) MUTATED        8     21     71     44     36
  AMP PEAK 22(15Q26.3) WILD-TYPE    166    165    334     90     90
D22V10, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                            8                            166
  CLUS_2                           21                            165
  CLUS_3                           71                            334
  CLUS_4                           44                             90
  CLUS_5                           36                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(15Q26.3) MUTATED       41     28     54
  AMP PEAK 22(15Q26.3) WILD-TYPE    208    228    155
D22V11, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           41                            208
  CLUS_2                           28                            228
  CLUS_3                           54                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(15Q26.3) MUTATED       39      6     38     20      8     12
  AMP PEAK 22(15Q26.3) WILD-TYPE     88     61    155    115    117     55
D22V12, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           39                             88
  CLUS_2                            6                             61
  CLUS_3                           38                            155
  CLUS_4                           20                            115
  CLUS_5                            8                            117
  CLUS_6                           12                             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(17Q12) MUTATED        9     11     53     19     14     49      7
  AMP PEAK 23(17Q12) WILD-TYPE     12     25     66     77     95     23     13
                              vv
clus                           CLUS_8
  AMP PEAK 23(17Q12) MUTATED        4
  AMP PEAK 23(17Q12) WILD-TYPE     36
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                          9                           12
  CLUS_2                         11                           25
  CLUS_3                         53                           66
  CLUS_4                         19                           77
  CLUS_5                         14                           95
  CLUS_6                         49                           23
  CLUS_7                          7                           13
  CLUS_8                          4                           36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED       40     28     71     16     11
  AMP PEAK 23(17Q12) WILD-TYPE     61    124     43     72     47
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         40                           61
  CLUS_2                         28                          124
  CLUS_3                         71                           43
  CLUS_4                         16                           72
  CLUS_5                         11                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED       59    159     25     64     13
  AMP PEAK 23(17Q12) WILD-TYPE    340     81     74    200     29
D23V3, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         59                          340
  CLUS_2                        159                           81
  CLUS_3                         25                           74
  CLUS_4                         64                          200
  CLUS_5                         13                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED       33     46     85     23     29
  AMP PEAK 23(17Q12) WILD-TYPE     99    151     92     65     99
D23V4, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         33                           99
  CLUS_2                         46                          151
  CLUS_3                         85                           92
  CLUS_4                         23                           65
  CLUS_5                         29                           99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       58     39     32
  AMP PEAK 23(17Q12) WILD-TYPE     91     93     85
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         58                           91
  CLUS_2                         39                           93
  CLUS_3                         32                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED        9     28     20     41     31
  AMP PEAK 23(17Q12) WILD-TYPE     55     78     70     66      0
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                          9                           55
  CLUS_2                         28                           78
  CLUS_3                         20                           70
  CLUS_4                         41                           66
  CLUS_5                         31                            0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(17Q12) MUTATED       35     28     37    101    108      6      4
  AMP PEAK 23(17Q12) WILD-TYPE    155    115    197     60    136     46     12
D23V7, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         35                          155
  CLUS_2                         28                          115
  CLUS_3                         37                          197
  CLUS_4                        101                           60
  CLUS_5                        108                          136
  CLUS_6                          6                           46
  CLUS_7                          4                           12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q12) MUTATED       31     44     28     91     88     37
  AMP PEAK 23(17Q12) WILD-TYPE    147    199    169     89     96     21
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         31                          147
  CLUS_2                         44                          199
  CLUS_3                         28                          169
  CLUS_4                         91                           89
  CLUS_5                         88                           96
  CLUS_6                         37                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       70    148     95
  AMP PEAK 23(17Q12) WILD-TYPE    236    274    202
D23V9, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         70                          236
  CLUS_2                        148                          274
  CLUS_3                         95                          202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(17Q12) MUTATED       25     52    164     20     52
  AMP PEAK 23(17Q12) WILD-TYPE    149    134    241    114     74
D23V10, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         25                          149
  CLUS_2                         52                          134
  CLUS_3                        164                          241
  CLUS_4                         20                          114
  CLUS_5                         52                           74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(17Q12) MUTATED       88     59     71
  AMP PEAK 23(17Q12) WILD-TYPE    161    197    138
D23V11, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         88                          161
  CLUS_2                         59                          197
  CLUS_3                         71                          138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(17Q12) MUTATED       24     14     70     53     16     41
  AMP PEAK 23(17Q12) WILD-TYPE    103     53    123     82    109     26
D23V12, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         24                          103
  CLUS_2                         14                           53
  CLUS_3                         70                          123
  CLUS_4                         53                           82
  CLUS_5                         16                          109
  CLUS_6                         41                           26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(17Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED        9     17     81     29     16     44
  AMP PEAK 24(17Q23.1) WILD-TYPE     12     19     38     67     93     28
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 24(17Q23.1) MUTATED       11      9
  AMP PEAK 24(17Q23.1) WILD-TYPE      9     31
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                            9                             12
  CLUS_2                           17                             19
  CLUS_3                           81                             38
  CLUS_4                           29                             67
  CLUS_5                           16                             93
  CLUS_6                           44                             28
  CLUS_7                           11                              9
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED       62     45     71     25     13
  AMP PEAK 24(17Q23.1) WILD-TYPE     39    107     43     63     45
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           62                             39
  CLUS_2                           45                            107
  CLUS_3                           71                             43
  CLUS_4                           25                             63
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED       69    189     28    113     18
  AMP PEAK 24(17Q23.1) WILD-TYPE    330     51     71    151     24
D24V3, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           69                            330
  CLUS_2                          189                             51
  CLUS_3                           28                             71
  CLUS_4                          113                            151
  CLUS_5                           18                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED       52     61     99     28     40
  AMP PEAK 24(17Q23.1) WILD-TYPE     80    136     78     60     88
D24V4, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           52                             80
  CLUS_2                           61                            136
  CLUS_3                           99                             78
  CLUS_4                           28                             60
  CLUS_5                           40                             88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       69     52     45
  AMP PEAK 24(17Q23.1) WILD-TYPE     80     80     72
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           69                             80
  CLUS_2                           52                             80
  CLUS_3                           45                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED       13     40     26     68     19
  AMP PEAK 24(17Q23.1) WILD-TYPE     51     66     64     39     12
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           40                             66
  CLUS_3                           26                             64
  CLUS_4                           68                             39
  CLUS_5                           19                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED       66     40     40     91    156     14
  AMP PEAK 24(17Q23.1) WILD-TYPE    124    103    194     70     88     38
                                vv
clus                             CLUS_7
  AMP PEAK 24(17Q23.1) MUTATED        9
  AMP PEAK 24(17Q23.1) WILD-TYPE      7
D24V7, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           66                            124
  CLUS_2                           40                            103
  CLUS_3                           40                            194
  CLUS_4                           91                             70
  CLUS_5                          156                             88
  CLUS_6                           14                             38
  CLUS_7                            9                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED       59     68     32    111    117     29
  AMP PEAK 24(17Q23.1) WILD-TYPE    119    175    165     69     67     29
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           59                            119
  CLUS_2                           68                            175
  CLUS_3                           32                            165
  CLUS_4                          111                             69
  CLUS_5                          117                             67
  CLUS_6                           29                             29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       80    187    142
  AMP PEAK 24(17Q23.1) WILD-TYPE    226    235    155
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           80                            226
  CLUS_2                          187                            235
  CLUS_3                          142                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(17Q23.1) MUTATED       33     71    197     43     65
  AMP PEAK 24(17Q23.1) WILD-TYPE    141    115    208     91     61
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           33                            141
  CLUS_2                           71                            115
  CLUS_3                          197                            208
  CLUS_4                           43                             91
  CLUS_5                           65                             61
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(17Q23.1) MUTATED       97     74    102
  AMP PEAK 24(17Q23.1) WILD-TYPE    152    182    107
D24V11, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           97                            152
  CLUS_2                           74                            182
  CLUS_3                          102                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(17Q23.1) MUTATED       46     19     83     63     23     39
  AMP PEAK 24(17Q23.1) WILD-TYPE     81     48    110     72    102     28
D24V12, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           46                             81
  CLUS_2                           19                             48
  CLUS_3                           83                            110
  CLUS_4                           63                             72
  CLUS_5                           23                            102
  CLUS_6                           39                             28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED        5      6     22     40     16     11
  AMP PEAK 25(19P13.12) WILD-TYPE     16     30     97     56     93     61
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 25(19P13.12) MUTATED        5      4
  AMP PEAK 25(19P13.12) WILD-TYPE     15     36
D25V1, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                             5                              16
  CLUS_2                             6                              30
  CLUS_3                            22                              97
  CLUS_4                            40                              56
  CLUS_5                            16                              93
  CLUS_6                            11                              61
  CLUS_7                             5                              15
  CLUS_8                             4                              36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       19     21     23     35     11
  AMP PEAK 25(19P13.12) WILD-TYPE     82    131     91     53     47
D25V2, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            19                              82
  CLUS_2                            21                             131
  CLUS_3                            23                              91
  CLUS_4                            35                              53
  CLUS_5                            11                              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       36     47     30     98     10
  AMP PEAK 25(19P13.12) WILD-TYPE    363    193     69    166     32
D25V3, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            36                             363
  CLUS_2                            47                             193
  CLUS_3                            30                              69
  CLUS_4                            98                             166
  CLUS_5                            10                              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       47     25     31     16     26
  AMP PEAK 25(19P13.12) WILD-TYPE     85    172    146     72    102
D25V4, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            47                              85
  CLUS_2                            25                             172
  CLUS_3                            31                             146
  CLUS_4                            16                              72
  CLUS_5                            26                             102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       49     25     17
  AMP PEAK 25(19P13.12) WILD-TYPE    100    107    100
D25V5, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            49                             100
  CLUS_2                            25                             107
  CLUS_3                            17                             100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       12     16     35     21      7
  AMP PEAK 25(19P13.12) WILD-TYPE     52     90     55     86     24
D25V6, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            12                              52
  CLUS_2                            16                              90
  CLUS_3                            35                              55
  CLUS_4                            21                              86
  CLUS_5                             7                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED       78     27     29     32     42      6
  AMP PEAK 25(19P13.12) WILD-TYPE    112    116    205    129    202     46
                                 vv
clus                              CLUS_7
  AMP PEAK 25(19P13.12) MUTATED        5
  AMP PEAK 25(19P13.12) WILD-TYPE     11
D25V7, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            78                             112
  CLUS_2                            27                             116
  CLUS_3                            29                             205
  CLUS_4                            32                             129
  CLUS_5                            42                             202
  CLUS_6                             6                              46
  CLUS_7                             5                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED       72     41     22     35     36     13
  AMP PEAK 25(19P13.12) WILD-TYPE    106    202    175    145    148     45
D25V8, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            72                             106
  CLUS_2                            41                             202
  CLUS_3                            22                             175
  CLUS_4                            35                             145
  CLUS_5                            36                             148
  CLUS_6                            13                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       55     60    100
  AMP PEAK 25(19P13.12) WILD-TYPE    251    362    197
D25V9, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            55                             251
  CLUS_2                            60                             362
  CLUS_3                           100                             197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(19P13.12) MUTATED       27     23     73     56     36
  AMP PEAK 25(19P13.12) WILD-TYPE    147    163    332     78     90
D25V10, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            27                             147
  CLUS_2                            23                             163
  CLUS_3                            73                             332
  CLUS_4                            56                              78
  CLUS_5                            36                              90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(19P13.12) MUTATED       41     46     68
  AMP PEAK 25(19P13.12) WILD-TYPE    208    210    141
D25V11, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            41                             208
  CLUS_2                            46                             210
  CLUS_3                            68                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(19P13.12) MUTATED       49     13     33     25     17     18
  AMP PEAK 25(19P13.12) WILD-TYPE     78     54    160    110    108     49
D25V12, multiclass
        clus
vv       AMP PEAK 25(19P13.12) MUTATED AMP PEAK 25(19P13.12) WILD-TYPE
  CLUS_1                            49                              78
  CLUS_2                            13                              54
  CLUS_3                            33                             160
  CLUS_4                            25                             110
  CLUS_5                            17                             108
  CLUS_6                            18                              49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(19Q12) MUTATED        4      5     29     55     15     20      7
  AMP PEAK 26(19Q12) WILD-TYPE     17     31     90     41     94     52     13
                              vv
clus                           CLUS_8
  AMP PEAK 26(19Q12) MUTATED        5
  AMP PEAK 26(19Q12) WILD-TYPE     35
D26V1, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                          4                           17
  CLUS_2                          5                           31
  CLUS_3                         29                           90
  CLUS_4                         55                           41
  CLUS_5                         15                           94
  CLUS_6                         20                           52
  CLUS_7                          7                           13
  CLUS_8                          5                           35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       20     24     35     50     11
  AMP PEAK 26(19Q12) WILD-TYPE     81    128     79     38     47
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         20                           81
  CLUS_2                         24                          128
  CLUS_3                         35                           79
  CLUS_4                         50                           38
  CLUS_5                         11                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       36     54     32    138     13
  AMP PEAK 26(19Q12) WILD-TYPE    363    186     67    126     29
D26V3, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         36                          363
  CLUS_2                         54                          186
  CLUS_3                         32                           67
  CLUS_4                        138                          126
  CLUS_5                         13                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       69     29     43     15     25
  AMP PEAK 26(19Q12) WILD-TYPE     63    168    134     73    103
D26V4, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         69                           63
  CLUS_2                         29                          168
  CLUS_3                         43                          134
  CLUS_4                         15                           73
  CLUS_5                         25                          103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       64     22     24
  AMP PEAK 26(19Q12) WILD-TYPE     85    110     93
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         64                           85
  CLUS_2                         22                          110
  CLUS_3                         24                           93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       15     21     46     18     10
  AMP PEAK 26(19Q12) WILD-TYPE     49     85     44     89     21
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         15                           49
  CLUS_2                         21                           85
  CLUS_3                         46                           44
  CLUS_4                         18                           89
  CLUS_5                         10                           21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 26(19Q12) MUTATED      106     24     31     48     52      5      6
  AMP PEAK 26(19Q12) WILD-TYPE     84    119    203    113    192     47     10
D26V7, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        106                           84
  CLUS_2                         24                          119
  CLUS_3                         31                          203
  CLUS_4                         48                          113
  CLUS_5                         52                          192
  CLUS_6                          5                           47
  CLUS_7                          6                           10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q12) MUTATED      101     40     22     45     41     23
  AMP PEAK 26(19Q12) WILD-TYPE     77    203    175    135    143     35
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        101                           77
  CLUS_2                         40                          203
  CLUS_3                         22                          175
  CLUS_4                         45                          135
  CLUS_5                         41                          143
  CLUS_6                         23                           35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       51     78    140
  AMP PEAK 26(19Q12) WILD-TYPE    255    344    157
D26V9, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         51                          255
  CLUS_2                         78                          344
  CLUS_3                        140                          157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(19Q12) MUTATED       24     26     91     75     53
  AMP PEAK 26(19Q12) WILD-TYPE    150    160    314     59     73
D26V10, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         24                          150
  CLUS_2                         26                          160
  CLUS_3                         91                          314
  CLUS_4                         75                           59
  CLUS_5                         53                           73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(19Q12) MUTATED       46     48     97
  AMP PEAK 26(19Q12) WILD-TYPE    203    208    112
D26V11, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         46                          203
  CLUS_2                         48                          208
  CLUS_3                         97                          112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(19Q12) MUTATED       70     12     44     30     14     21
  AMP PEAK 26(19Q12) WILD-TYPE     57     55    149    105    111     46
D26V12, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         70                           57
  CLUS_2                         12                           55
  CLUS_3                         44                          149
  CLUS_4                         30                          105
  CLUS_5                         14                          111
  CLUS_6                         21                           46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED        5      8     36     40     17     20
  AMP PEAK 27(19Q13.42) WILD-TYPE     16     28     83     56     92     52
                                 vv
clus                              CLUS_7 CLUS_8
  AMP PEAK 27(19Q13.42) MUTATED       10      6
  AMP PEAK 27(19Q13.42) WILD-TYPE     10     34
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                             5                              16
  CLUS_2                             8                              28
  CLUS_3                            36                              83
  CLUS_4                            40                              56
  CLUS_5                            17                              92
  CLUS_6                            20                              52
  CLUS_7                            10                              10
  CLUS_8                             6                              34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.42) MUTATED       23     31     42     34     12
  AMP PEAK 27(19Q13.42) WILD-TYPE     78    121     72     54     46
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            23                              78
  CLUS_2                            31                             121
  CLUS_3                            42                              72
  CLUS_4                            34                              54
  CLUS_5                            12                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.42) MUTATED       39     72     34    106     17
  AMP PEAK 27(19Q13.42) WILD-TYPE    360    168     65    158     25
D27V3, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            39                             360
  CLUS_2                            72                             168
  CLUS_3                            34                              65
  CLUS_4                           106                             158
  CLUS_5                            17                              25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.42) MUTATED       42     35     56     19     21
  AMP PEAK 27(19Q13.42) WILD-TYPE     90    162    121     69    107
D27V4, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            42                              90
  CLUS_2                            35                             162
  CLUS_3                            56                             121
  CLUS_4                            19                              69
  CLUS_5                            21                             107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.42) MUTATED       57     26     27
  AMP PEAK 27(19Q13.42) WILD-TYPE     92    106     90
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            57                              92
  CLUS_2                            26                             106
  CLUS_3                            27                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.42) MUTATED       16     25     32     26     11
  AMP PEAK 27(19Q13.42) WILD-TYPE     48     81     58     81     20
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            16                              48
  CLUS_2                            25                              81
  CLUS_3                            32                              58
  CLUS_4                            26                              81
  CLUS_5                            11                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       67     29     34     48     74      6
  AMP PEAK 27(19Q13.42) WILD-TYPE    123    114    200    113    170     46
                                 vv
clus                              CLUS_7
  AMP PEAK 27(19Q13.42) MUTATED        9
  AMP PEAK 27(19Q13.42) WILD-TYPE      7
D27V7, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            67                             123
  CLUS_2                            29                             114
  CLUS_3                            34                             200
  CLUS_4                            48                             113
  CLUS_5                            74                             170
  CLUS_6                             6                              46
  CLUS_7                             9                               7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       61     47     25     58     58     18
  AMP PEAK 27(19Q13.42) WILD-TYPE    117    196    172    122    126     40
D27V8, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            61                             117
  CLUS_2                            47                             196
  CLUS_3                            25                             172
  CLUS_4                            58                             122
  CLUS_5                            58                             126
  CLUS_6                            18                              40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.42) MUTATED       62     99    103
  AMP PEAK 27(19Q13.42) WILD-TYPE    244    323    194
D27V9, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            62                             244
  CLUS_2                            99                             323
  CLUS_3                           103                             194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(19Q13.42) MUTATED       28     36    109     44     47
  AMP PEAK 27(19Q13.42) WILD-TYPE    146    150    296     90     79
D27V10, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            28                             146
  CLUS_2                            36                             150
  CLUS_3                           109                             296
  CLUS_4                            44                              90
  CLUS_5                            47                              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(19Q13.42) MUTATED       61     56     63
  AMP PEAK 27(19Q13.42) WILD-TYPE    188    200    146
D27V11, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            61                             188
  CLUS_2                            56                             200
  CLUS_3                            63                             146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(19Q13.42) MUTATED       39     14     51     39     18     19
  AMP PEAK 27(19Q13.42) WILD-TYPE     88     53    142     96    107     48
D27V12, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            39                              88
  CLUS_2                            14                              53
  CLUS_3                            51                             142
  CLUS_4                            39                              96
  CLUS_5                            18                             107
  CLUS_6                            19                              48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED       12     18     85     52     35     49
  AMP PEAK 28(20Q13.2) WILD-TYPE      9     18     34     44     74     23
                                vv
clus                             CLUS_7 CLUS_8
  AMP PEAK 28(20Q13.2) MUTATED       15     10
  AMP PEAK 28(20Q13.2) WILD-TYPE      5     30
D28V1, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           18                             18
  CLUS_3                           85                             34
  CLUS_4                           52                             44
  CLUS_5                           35                             74
  CLUS_6                           49                             23
  CLUS_7                           15                              5
  CLUS_8                           10                             30
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.2) MUTATED       73     56     86     44     17
  AMP PEAK 28(20Q13.2) WILD-TYPE     28     96     28     44     41
D28V2, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           73                             28
  CLUS_2                           56                             96
  CLUS_3                           86                             28
  CLUS_4                           44                             44
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.2) MUTATED       78    197     60    175     25
  AMP PEAK 28(20Q13.2) WILD-TYPE    321     43     39     89     17
D28V3, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           78                            321
  CLUS_2                          197                             43
  CLUS_3                           60                             39
  CLUS_4                          175                             89
  CLUS_5                           25                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.2) MUTATED       83     78    113     29     49
  AMP PEAK 28(20Q13.2) WILD-TYPE     49    119     64     59     79
D28V4, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           83                             49
  CLUS_2                           78                            119
  CLUS_3                          113                             64
  CLUS_4                           29                             59
  CLUS_5                           49                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.2) MUTATED      101     66     54
  AMP PEAK 28(20Q13.2) WILD-TYPE     48     66     63
D28V5, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          101                             48
  CLUS_2                           66                             66
  CLUS_3                           54                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.2) MUTATED       29     44     53     73     22
  AMP PEAK 28(20Q13.2) WILD-TYPE     35     62     37     34      9
D28V6, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           29                             35
  CLUS_2                           44                             62
  CLUS_3                           53                             37
  CLUS_4                           73                             34
  CLUS_5                           22                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED      104     45     79    106    170     18
  AMP PEAK 28(20Q13.2) WILD-TYPE     86     98    155     55     74     34
                                vv
clus                             CLUS_7
  AMP PEAK 28(20Q13.2) MUTATED       10
  AMP PEAK 28(20Q13.2) WILD-TYPE      6
D28V7, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          104                             86
  CLUS_2                           45                             98
  CLUS_3                           79                            155
  CLUS_4                          106                             55
  CLUS_5                          170                             74
  CLUS_6                           18                             34
  CLUS_7                           10                              6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED       96     86     52    130    135     33
  AMP PEAK 28(20Q13.2) WILD-TYPE     82    157    145     50     49     25
D28V8, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           96                             82
  CLUS_2                           86                            157
  CLUS_3                           52                            145
  CLUS_4                          130                             50
  CLUS_5                          135                             49
  CLUS_6                           33                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.2) MUTATED      113    233    181
  AMP PEAK 28(20Q13.2) WILD-TYPE    193    189    116
D28V9, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          113                            193
  CLUS_2                          233                            189
  CLUS_3                          181                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(20Q13.2) MUTATED       49     80    248     71     79
  AMP PEAK 28(20Q13.2) WILD-TYPE    125    106    157     63     47
D28V10, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           49                            125
  CLUS_2                           80                            106
  CLUS_3                          248                            157
  CLUS_4                           71                             63
  CLUS_5                           79                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(20Q13.2) MUTATED      140     95    129
  AMP PEAK 28(20Q13.2) WILD-TYPE    109    161     80
D28V11, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          140                            109
  CLUS_2                           95                            161
  CLUS_3                          129                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(20Q13.2) MUTATED       72     22    123     69     36     42
  AMP PEAK 28(20Q13.2) WILD-TYPE     55     45     70     66     89     25
D28V12, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           72                             55
  CLUS_2                           22                             45
  CLUS_3                          123                             70
  CLUS_4                           69                             66
  CLUS_5                           36                             89
  CLUS_6                           42                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  1(1P36.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED        9     11     61     42     31     46
  DEL PEAK  1(1P36.13) WILD-TYPE     12     25     58     54     78     26
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  1(1P36.13) MUTATED        7     12
  DEL PEAK  1(1P36.13) WILD-TYPE     13     28
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            9                             12
  CLUS_2                           11                             25
  CLUS_3                           61                             58
  CLUS_4                           42                             54
  CLUS_5                           31                             78
  CLUS_6                           46                             26
  CLUS_7                            7                             13
  CLUS_8                           12                             28
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       57     39     67     39     17
  DEL PEAK  1(1P36.13) WILD-TYPE     44    113     47     49     41
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           57                             44
  CLUS_2                           39                            113
  CLUS_3                           67                             47
  CLUS_4                           39                             49
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       68    157     60    135     17
  DEL PEAK  1(1P36.13) WILD-TYPE    331     83     39    129     25
D29V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           68                            331
  CLUS_2                          157                             83
  CLUS_3                           60                             39
  CLUS_4                          135                            129
  CLUS_5                           17                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       58     64    110     24     36
  DEL PEAK  1(1P36.13) WILD-TYPE     74    133     67     64     92
D29V4, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           58                             74
  CLUS_2                           64                            133
  CLUS_3                          110                             67
  CLUS_4                           24                             64
  CLUS_5                           36                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       79     57     38
  DEL PEAK  1(1P36.13) WILD-TYPE     70     75     79
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           79                             70
  CLUS_2                           57                             75
  CLUS_3                           38                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       24     33     41     58     18
  DEL PEAK  1(1P36.13) WILD-TYPE     40     73     49     49     13
D29V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           24                             40
  CLUS_2                           33                             73
  CLUS_3                           41                             49
  CLUS_4                           58                             49
  CLUS_5                           18                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       79     32     82     89    127     18
  DEL PEAK  1(1P36.13) WILD-TYPE    111    111    152     72    117     34
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.13) MUTATED        7
  DEL PEAK  1(1P36.13) WILD-TYPE      9
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           79                            111
  CLUS_2                           32                            111
  CLUS_3                           82                            152
  CLUS_4                           89                             72
  CLUS_5                          127                            117
  CLUS_6                           18                             34
  CLUS_7                            7                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       79     75     54    113     97     16
  DEL PEAK  1(1P36.13) WILD-TYPE     99    168    143     67     87     42
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           79                             99
  CLUS_2                           75                            168
  CLUS_3                           54                            143
  CLUS_4                          113                             67
  CLUS_5                           97                             87
  CLUS_6                           16                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED       92    190    141
  DEL PEAK  1(1P36.13) WILD-TYPE    214    232    156
D29V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           92                            214
  CLUS_2                          190                            232
  CLUS_3                          141                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.13) MUTATED       40     61    210     60     52
  DEL PEAK  1(1P36.13) WILD-TYPE    134    125    195     74     74
D29V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           40                            134
  CLUS_2                           61                            125
  CLUS_3                          210                            195
  CLUS_4                           60                             74
  CLUS_5                           52                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.13) MUTATED      103     81     93
  DEL PEAK  1(1P36.13) WILD-TYPE    146    175    116
D29V11, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          103                            146
  CLUS_2                           81                            175
  CLUS_3                           93                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.13) MUTATED       54     19     93     52     33     26
  DEL PEAK  1(1P36.13) WILD-TYPE     73     48    100     83     92     41
D29V12, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           54                             73
  CLUS_2                           19                             48
  CLUS_3                           93                            100
  CLUS_4                           52                             83
  CLUS_5                           33                             92
  CLUS_6                           26                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  2(1P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED        7     11     47     24     34     39
  DEL PEAK  2(1P21.2) WILD-TYPE     14     25     72     72     75     33
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  2(1P21.2) MUTATED        8      9
  DEL PEAK  2(1P21.2) WILD-TYPE     12     31
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                           7                            14
  CLUS_2                          11                            25
  CLUS_3                          47                            72
  CLUS_4                          24                            72
  CLUS_5                          34                            75
  CLUS_6                          39                            33
  CLUS_7                           8                            12
  CLUS_8                           9                            31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.2) MUTATED       47     37     60     20     15
  DEL PEAK  2(1P21.2) WILD-TYPE     54    115     54     68     43
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          47                            54
  CLUS_2                          37                           115
  CLUS_3                          60                            54
  CLUS_4                          20                            68
  CLUS_5                          15                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.2) MUTATED       62    129     57     84     13
  DEL PEAK  2(1P21.2) WILD-TYPE    337    111     42    180     29
D30V3, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          62                           337
  CLUS_2                         129                           111
  CLUS_3                          57                            42
  CLUS_4                          84                           180
  CLUS_5                          13                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.2) MUTATED       36     54     86     22     26
  DEL PEAK  2(1P21.2) WILD-TYPE     96    143     91     66    102
D30V4, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          36                            96
  CLUS_2                          54                           143
  CLUS_3                          86                            91
  CLUS_4                          22                            66
  CLUS_5                          26                           102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.2) MUTATED       61     50     23
  DEL PEAK  2(1P21.2) WILD-TYPE     88     82     94
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          61                            88
  CLUS_2                          50                            82
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.2) MUTATED       21     24     25     49     15
  DEL PEAK  2(1P21.2) WILD-TYPE     43     82     65     58     16
D30V6, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          21                            43
  CLUS_2                          24                            82
  CLUS_3                          25                            65
  CLUS_4                          49                            58
  CLUS_5                          15                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED       43     30     75     79    103      9
  DEL PEAK  2(1P21.2) WILD-TYPE    147    113    159     82    141     43
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P21.2) MUTATED        4
  DEL PEAK  2(1P21.2) WILD-TYPE     12
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          43                           147
  CLUS_2                          30                           113
  CLUS_3                          75                           159
  CLUS_4                          79                            82
  CLUS_5                         103                           141
  CLUS_6                           9                            43
  CLUS_7                           4                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED       39     67     47    101     74     15
  DEL PEAK  2(1P21.2) WILD-TYPE    139    176    150     79    110     43
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          39                           139
  CLUS_2                          67                           176
  CLUS_3                          47                           150
  CLUS_4                         101                            79
  CLUS_5                          74                           110
  CLUS_6                          15                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.2) MUTATED       81    164     93
  DEL PEAK  2(1P21.2) WILD-TYPE    225    258    204
D30V9, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          81                           225
  CLUS_2                         164                           258
  CLUS_3                          93                           204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P21.2) MUTATED       39     49    180     28     42
  DEL PEAK  2(1P21.2) WILD-TYPE    135    137    225    106     84
D30V10, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          39                           135
  CLUS_2                          49                           137
  CLUS_3                         180                           225
  CLUS_4                          28                           106
  CLUS_5                          42                            84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P21.2) MUTATED       82     70     64
  DEL PEAK  2(1P21.2) WILD-TYPE    167    186    145
D30V11, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          82                           167
  CLUS_2                          70                           186
  CLUS_3                          64                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P21.2) MUTATED       29     14     77     42     29     25
  DEL PEAK  2(1P21.2) WILD-TYPE     98     53    116     93     96     42
D30V12, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          29                            98
  CLUS_2                          14                            53
  CLUS_3                          77                           116
  CLUS_4                          42                            93
  CLUS_5                          29                            96
  CLUS_6                          25                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  3(2P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.1) MUTATED        4      9     27     14     23     14
  DEL PEAK  3(2P25.1) WILD-TYPE     17     27     92     82     86     58
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  3(2P25.1) MUTATED        1      5
  DEL PEAK  3(2P25.1) WILD-TYPE     19     35
D31V1, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           9                            27
  CLUS_3                          27                            92
  CLUS_4                          14                            82
  CLUS_5                          23                            86
  CLUS_6                          14                            58
  CLUS_7                           1                            19
  CLUS_8                           5                            35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.1) MUTATED       24     23     25     14     11
  DEL PEAK  3(2P25.1) WILD-TYPE     77    129     89     74     47
D31V2, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          24                            77
  CLUS_2                          23                           129
  CLUS_3                          25                            89
  CLUS_4                          14                            74
  CLUS_5                          11                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.1) MUTATED       33     72     29     53     11
  DEL PEAK  3(2P25.1) WILD-TYPE    366    168     70    211     31
D31V3, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          33                           366
  CLUS_2                          72                           168
  CLUS_3                          29                            70
  CLUS_4                          53                           211
  CLUS_5                          11                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.1) MUTATED       23     47     37      8     14
  DEL PEAK  3(2P25.1) WILD-TYPE    109    150    140     80    114
D31V4, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          23                           109
  CLUS_2                          47                           150
  CLUS_3                          37                           140
  CLUS_4                           8                            80
  CLUS_5                          14                           114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.1) MUTATED       28     30     16
  DEL PEAK  3(2P25.1) WILD-TYPE    121    102    101
D31V5, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          28                           121
  CLUS_2                          30                           102
  CLUS_3                          16                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.1) MUTATED       15     13     16     25      5
  DEL PEAK  3(2P25.1) WILD-TYPE     49     93     74     82     26
D31V6, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          13                            93
  CLUS_3                          16                            74
  CLUS_4                          25                            82
  CLUS_5                           5                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.1) MUTATED       32     17     52     26     60      6
  DEL PEAK  3(2P25.1) WILD-TYPE    158    126    182    135    184     46
                               vv
clus                            CLUS_7
  DEL PEAK  3(2P25.1) MUTATED        2
  DEL PEAK  3(2P25.1) WILD-TYPE     14
D31V7, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          32                           158
  CLUS_2                          17                           126
  CLUS_3                          52                           182
  CLUS_4                          26                           135
  CLUS_5                          60                           184
  CLUS_6                           6                            46
  CLUS_7                           2                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.1) MUTATED       29     32     34     46     52      2
  DEL PEAK  3(2P25.1) WILD-TYPE    149    211    163    134    132     56
D31V8, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          29                           149
  CLUS_2                          32                           211
  CLUS_3                          34                           163
  CLUS_4                          46                           134
  CLUS_5                          52                           132
  CLUS_6                           2                            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.1) MUTATED       40    104     47
  DEL PEAK  3(2P25.1) WILD-TYPE    266    318    250
D31V9, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          40                           266
  CLUS_2                         104                           318
  CLUS_3                          47                           250
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.1) MUTATED       18     41     96     23     13
  DEL PEAK  3(2P25.1) WILD-TYPE    156    145    309    111    113
D31V10, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          18                           156
  CLUS_2                          41                           145
  CLUS_3                          96                           309
  CLUS_4                          23                           111
  CLUS_5                          13                           113
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.1) MUTATED       61     36     34
  DEL PEAK  3(2P25.1) WILD-TYPE    188    220    175
D31V11, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          61                           188
  CLUS_2                          36                           220
  CLUS_3                          34                           175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.1) MUTATED       21     13     49     30     11      7
  DEL PEAK  3(2P25.1) WILD-TYPE    106     54    144    105    114     60
D31V12, multiclass
        clus
vv       DEL PEAK  3(2P25.1) MUTATED DEL PEAK  3(2P25.1) WILD-TYPE
  CLUS_1                          21                           106
  CLUS_2                          13                            54
  CLUS_3                          49                           144
  CLUS_4                          30                           105
  CLUS_5                          11                           114
  CLUS_6                           7                            60
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        5      9     42     49     24     28
  DEL PEAK  4(2Q37.3) WILD-TYPE     16     27     77     47     85     44
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  4(2Q37.3) MUTATED        6      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     14     40
D32V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                            16
  CLUS_2                           9                            27
  CLUS_3                          42                            77
  CLUS_4                          49                            47
  CLUS_5                          24                            85
  CLUS_6                          28                            44
  CLUS_7                           6                            14
  CLUS_8                           0                            40
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       40     22     48     43     10
  DEL PEAK  4(2Q37.3) WILD-TYPE     61    130     66     45     48
D32V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          40                            61
  CLUS_2                          22                           130
  CLUS_3                          48                            66
  CLUS_4                          43                            45
  CLUS_5                          10                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       40     97     31    128     14
  DEL PEAK  4(2Q37.3) WILD-TYPE    359    143     68    136     28
D32V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          40                           359
  CLUS_2                          97                           143
  CLUS_3                          31                            68
  CLUS_4                         128                           136
  CLUS_5                          14                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       64     46     49     15     19
  DEL PEAK  4(2Q37.3) WILD-TYPE     68    151    128     73    109
D32V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          64                            68
  CLUS_2                          46                           151
  CLUS_3                          49                           128
  CLUS_4                          15                            73
  CLUS_5                          19                           109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       73     40     14
  DEL PEAK  4(2Q37.3) WILD-TYPE     76     92    103
D32V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          73                            76
  CLUS_2                          40                            92
  CLUS_3                          14                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       19     10     41     45     12
  DEL PEAK  4(2Q37.3) WILD-TYPE     45     96     49     62     19
D32V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          19                            45
  CLUS_2                          10                            96
  CLUS_3                          41                            49
  CLUS_4                          45                            62
  CLUS_5                          12                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       93     19     50     59     79      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     97    124    184    102    165     48
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        3
  DEL PEAK  4(2Q37.3) WILD-TYPE     13
D32V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          93                            97
  CLUS_2                          19                           124
  CLUS_3                          50                           184
  CLUS_4                          59                           102
  CLUS_5                          79                           165
  CLUS_6                           4                            48
  CLUS_7                           3                            13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       87     30     34     75     67     14
  DEL PEAK  4(2Q37.3) WILD-TYPE     91    213    163    105    117     44
D32V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          87                            91
  CLUS_2                          30                           213
  CLUS_3                          34                           163
  CLUS_4                          75                           105
  CLUS_5                          67                           117
  CLUS_6                          14                            44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       47    122    133
  DEL PEAK  4(2Q37.3) WILD-TYPE    259    300    164
D32V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          47                           259
  CLUS_2                         122                           300
  CLUS_3                         133                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       17     47    128     68     42
  DEL PEAK  4(2Q37.3) WILD-TYPE    157    139    277     66     84
D32V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          17                           157
  CLUS_2                          47                           139
  CLUS_3                         128                           277
  CLUS_4                          68                            66
  CLUS_5                          42                            84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       65     37    102
  DEL PEAK  4(2Q37.3) WILD-TYPE    184    219    107
D32V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          65                           184
  CLUS_2                          37                           219
  CLUS_3                         102                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       64     13     65     34     10     18
  DEL PEAK  4(2Q37.3) WILD-TYPE     63     54    128    101    115     49
D32V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          64                            63
  CLUS_2                          13                            54
  CLUS_3                          65                           128
  CLUS_4                          34                           101
  CLUS_5                          10                           115
  CLUS_6                          18                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  5(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED        5     15     38     52      8     35
  DEL PEAK  5(3P21.31) WILD-TYPE     16     21     81     44    101     37
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK  5(3P21.31) MUTATED        9      7
  DEL PEAK  5(3P21.31) WILD-TYPE     11     33
D33V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           15                             21
  CLUS_3                           38                             81
  CLUS_4                           52                             44
  CLUS_5                            8                            101
  CLUS_6                           35                             37
  CLUS_7                            9                             11
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       29     36     55     48      1
  DEL PEAK  5(3P21.31) WILD-TYPE     72    116     59     40     57
D33V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           29                             72
  CLUS_2                           36                            116
  CLUS_3                           55                             59
  CLUS_4                           48                             40
  CLUS_5                            1                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       56     92     20    165      4
  DEL PEAK  5(3P21.31) WILD-TYPE    343    148     79     99     38
D33V3, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           56                            343
  CLUS_2                           92                            148
  CLUS_3                           20                             79
  CLUS_4                          165                             99
  CLUS_5                            4                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       70     31     74     23     27
  DEL PEAK  5(3P21.31) WILD-TYPE     62    166    103     65    101
D33V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           70                             62
  CLUS_2                           31                            166
  CLUS_3                           74                            103
  CLUS_4                           23                             65
  CLUS_5                           27                            101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       81     27     36
  DEL PEAK  5(3P21.31) WILD-TYPE     68    105     81
D33V5, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           81                             68
  CLUS_2                           27                            105
  CLUS_3                           36                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED        5     32     55     41     11
  DEL PEAK  5(3P21.31) WILD-TYPE     59     74     35     66     20
D33V6, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           32                             74
  CLUS_3                           55                             35
  CLUS_4                           41                             66
  CLUS_5                           11                             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED      103     30     27     76     81     12
  DEL PEAK  5(3P21.31) WILD-TYPE     87    113    207     85    163     40
                                vv
clus                             CLUS_7
  DEL PEAK  5(3P21.31) MUTATED        7
  DEL PEAK  5(3P21.31) WILD-TYPE      9
D33V7, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                          103                             87
  CLUS_2                           30                            113
  CLUS_3                           27                            207
  CLUS_4                           76                             85
  CLUS_5                           81                            163
  CLUS_6                           12                             40
  CLUS_7                            7                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       98     51     23     90     50     24
  DEL PEAK  5(3P21.31) WILD-TYPE     80    192    174     90    134     34
D33V8, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           98                             80
  CLUS_2                           51                            192
  CLUS_3                           23                            174
  CLUS_4                           90                             90
  CLUS_5                           50                            134
  CLUS_6                           24                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       58    117    155
  DEL PEAK  5(3P21.31) WILD-TYPE    248    305    142
D33V9, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           58                            248
  CLUS_2                          117                            305
  CLUS_3                          155                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       28     35    136     74     57
  DEL PEAK  5(3P21.31) WILD-TYPE    146    151    269     60     69
D33V10, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           28                            146
  CLUS_2                           35                            151
  CLUS_3                          136                            269
  CLUS_4                           74                             60
  CLUS_5                           57                             69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       63     55    110
  DEL PEAK  5(3P21.31) WILD-TYPE    186    201     99
D33V11, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           63                            186
  CLUS_2                           55                            201
  CLUS_3                          110                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       68     12     63     31     23     31
  DEL PEAK  5(3P21.31) WILD-TYPE     59     55    130    104    102     36
D33V12, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           68                             59
  CLUS_2                           12                             55
  CLUS_3                           63                            130
  CLUS_4                           31                            104
  CLUS_5                           23                            102
  CLUS_6                           31                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  6(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4P16.3) MUTATED        3     10     25     58     22     38
  DEL PEAK  6(4P16.3) WILD-TYPE     18     26     94     38     87     34
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  6(4P16.3) MUTATED        7      6
  DEL PEAK  6(4P16.3) WILD-TYPE     13     34
D34V1, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                           3                            18
  CLUS_2                          10                            26
  CLUS_3                          25                            94
  CLUS_4                          58                            38
  CLUS_5                          22                            87
  CLUS_6                          38                            34
  CLUS_7                           7                            13
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       27     28     51     52     11
  DEL PEAK  6(4P16.3) WILD-TYPE     74    124     63     36     47
D34V2, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          27                            74
  CLUS_2                          28                           124
  CLUS_3                          51                            63
  CLUS_4                          52                            36
  CLUS_5                          11                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       47     69     45    159     10
  DEL PEAK  6(4P16.3) WILD-TYPE    352    171     54    105     32
D34V3, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          47                           352
  CLUS_2                          69                           171
  CLUS_3                          45                            54
  CLUS_4                         159                           105
  CLUS_5                          10                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       84     40     50     15     29
  DEL PEAK  6(4P16.3) WILD-TYPE     48    157    127     73     99
D34V4, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          84                            48
  CLUS_2                          40                           157
  CLUS_3                          50                           127
  CLUS_4                          15                            73
  CLUS_5                          29                            99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       77     38     25
  DEL PEAK  6(4P16.3) WILD-TYPE     72     94     92
D34V5, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          77                            72
  CLUS_2                          38                            94
  CLUS_3                          25                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       18     25     54     32     11
  DEL PEAK  6(4P16.3) WILD-TYPE     46     81     36     75     20
D34V6, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          18                            46
  CLUS_2                          25                            81
  CLUS_3                          54                            36
  CLUS_4                          32                            75
  CLUS_5                          11                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4P16.3) MUTATED      117     20     54     70     53      7
  DEL PEAK  6(4P16.3) WILD-TYPE     73    123    180     91    191     45
                               vv
clus                            CLUS_7
  DEL PEAK  6(4P16.3) MUTATED        7
  DEL PEAK  6(4P16.3) WILD-TYPE      9
D34V7, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                         117                            73
  CLUS_2                          20                           123
  CLUS_3                          54                           180
  CLUS_4                          70                            91
  CLUS_5                          53                           191
  CLUS_6                           7                            45
  CLUS_7                           7                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4P16.3) MUTATED      110     38     37     74     39     30
  DEL PEAK  6(4P16.3) WILD-TYPE     68    205    160    106    145     28
D34V8, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                         110                            68
  CLUS_2                          38                           205
  CLUS_3                          37                           160
  CLUS_4                          74                           106
  CLUS_5                          39                           145
  CLUS_6                          30                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       50    113    156
  DEL PEAK  6(4P16.3) WILD-TYPE    256    309    141
D34V9, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          50                           256
  CLUS_2                         113                           309
  CLUS_3                         156                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4P16.3) MUTATED       23     35    124     84     53
  DEL PEAK  6(4P16.3) WILD-TYPE    151    151    281     50     73
D34V10, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          23                           151
  CLUS_2                          35                           151
  CLUS_3                         124                           281
  CLUS_4                          84                            50
  CLUS_5                          53                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4P16.3) MUTATED       65     48    111
  DEL PEAK  6(4P16.3) WILD-TYPE    184    208     98
D34V11, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          65                           184
  CLUS_2                          48                           208
  CLUS_3                         111                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(4P16.3) MUTATED       76     13     62     23     20     30
  DEL PEAK  6(4P16.3) WILD-TYPE     51     54    131    112    105     37
D34V12, multiclass
        clus
vv       DEL PEAK  6(4P16.3) MUTATED DEL PEAK  6(4P16.3) WILD-TYPE
  CLUS_1                          76                            51
  CLUS_2                          13                            54
  CLUS_3                          62                           131
  CLUS_4                          23                           112
  CLUS_5                          20                           105
  CLUS_6                          30                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  7(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q35.2) MUTATED        7     10     26     52     24     32
  DEL PEAK  7(4Q35.2) WILD-TYPE     14     26     93     44     85     40
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  7(4Q35.2) MUTATED       10      9
  DEL PEAK  7(4Q35.2) WILD-TYPE     10     31
D35V1, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           7                            14
  CLUS_2                          10                            26
  CLUS_3                          26                            93
  CLUS_4                          52                            44
  CLUS_5                          24                            85
  CLUS_6                          32                            40
  CLUS_7                          10                            10
  CLUS_8                           9                            31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q35.2) MUTATED       26     32     52     47     13
  DEL PEAK  7(4Q35.2) WILD-TYPE     75    120     62     41     45
D35V2, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          26                            75
  CLUS_2                          32                           120
  CLUS_3                          52                            62
  CLUS_4                          47                            41
  CLUS_5                          13                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q35.2) MUTATED       50     60     50    167     10
  DEL PEAK  7(4Q35.2) WILD-TYPE    349    180     49     97     32
D35V3, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          50                           349
  CLUS_2                          60                           180
  CLUS_3                          50                            49
  CLUS_4                         167                            97
  CLUS_5                          10                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q35.2) MUTATED       85     37     43     20     37
  DEL PEAK  7(4Q35.2) WILD-TYPE     47    160    134     68     91
D35V4, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          85                            47
  CLUS_2                          37                           160
  CLUS_3                          43                           134
  CLUS_4                          20                            68
  CLUS_5                          37                            91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q35.2) MUTATED       79     35     26
  DEL PEAK  7(4Q35.2) WILD-TYPE     70     97     91
D35V5, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          79                            70
  CLUS_2                          35                            97
  CLUS_3                          26                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q35.2) MUTATED       15     25     52     37     11
  DEL PEAK  7(4Q35.2) WILD-TYPE     49     81     38     70     20
D35V6, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          15                            49
  CLUS_2                          25                            81
  CLUS_3                          52                            38
  CLUS_4                          37                            70
  CLUS_5                          11                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q35.2) MUTATED      119     20     60     68     53      7
  DEL PEAK  7(4Q35.2) WILD-TYPE     71    123    174     93    191     45
                               vv
clus                            CLUS_7
  DEL PEAK  7(4Q35.2) MUTATED        8
  DEL PEAK  7(4Q35.2) WILD-TYPE      8
D35V7, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                         119                            71
  CLUS_2                          20                           123
  CLUS_3                          60                           174
  CLUS_4                          68                            93
  CLUS_5                          53                           191
  CLUS_6                           7                            45
  CLUS_7                           8                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q35.2) MUTATED      113     42     42     81     34     23
  DEL PEAK  7(4Q35.2) WILD-TYPE     65    201    155     99    150     35
D35V8, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                         113                            65
  CLUS_2                          42                           201
  CLUS_3                          42                           155
  CLUS_4                          81                            99
  CLUS_5                          34                           150
  CLUS_6                          23                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q35.2) MUTATED       55    111    158
  DEL PEAK  7(4Q35.2) WILD-TYPE    251    311    139
D35V9, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          55                           251
  CLUS_2                         111                           311
  CLUS_3                         158                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q35.2) MUTATED       23     36    121     88     56
  DEL PEAK  7(4Q35.2) WILD-TYPE    151    150    284     46     70
D35V10, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          23                           151
  CLUS_2                          36                           150
  CLUS_3                         121                           284
  CLUS_4                          88                            46
  CLUS_5                          56                            70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q35.2) MUTATED       63     49    113
  DEL PEAK  7(4Q35.2) WILD-TYPE    186    207     96
D35V11, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          63                           186
  CLUS_2                          49                           207
  CLUS_3                         113                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q35.2) MUTATED       79     14     68     20     19     25
  DEL PEAK  7(4Q35.2) WILD-TYPE     48     53    125    115    106     42
D35V12, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          79                            48
  CLUS_2                          14                            53
  CLUS_3                          68                           125
  CLUS_4                          20                           115
  CLUS_5                          19                           106
  CLUS_6                          25                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  8(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q11.2) MUTATED        3      5     19     69      7     26
  DEL PEAK  8(5Q11.2) WILD-TYPE     18     31    100     27    102     46
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  8(5Q11.2) MUTATED        3      4
  DEL PEAK  8(5Q11.2) WILD-TYPE     17     36
D36V1, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                           3                            18
  CLUS_2                           5                            31
  CLUS_3                          19                           100
  CLUS_4                          69                            27
  CLUS_5                           7                           102
  CLUS_6                          26                            46
  CLUS_7                           3                            17
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q11.2) MUTATED       18     15     38     63      2
  DEL PEAK  8(5Q11.2) WILD-TYPE     83    137     76     25     56
D36V2, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          18                            83
  CLUS_2                          15                           137
  CLUS_3                          38                            76
  CLUS_4                          63                            25
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q11.2) MUTATED       29     38      8    187     10
  DEL PEAK  8(5Q11.2) WILD-TYPE    370    202     91     77     32
D36V3, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          29                           370
  CLUS_2                          38                           202
  CLUS_3                           8                            91
  CLUS_4                         187                            77
  CLUS_5                          10                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q11.2) MUTATED       99     16     30      9     32
  DEL PEAK  8(5Q11.2) WILD-TYPE     33    181    147     79     96
D36V4, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          99                            33
  CLUS_2                          16                           181
  CLUS_3                          30                           147
  CLUS_4                           9                            79
  CLUS_5                          32                            96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q11.2) MUTATED       80     12     23
  DEL PEAK  8(5Q11.2) WILD-TYPE     69    120     94
D36V5, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          80                            69
  CLUS_2                          12                           120
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q11.2) MUTATED        4     14     64     23     10
  DEL PEAK  8(5Q11.2) WILD-TYPE     60     92     26     84     21
D36V6, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                          14                            92
  CLUS_3                          64                            26
  CLUS_4                          23                            84
  CLUS_5                          10                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q11.2) MUTATED      137      8     18     55     44      4
  DEL PEAK  8(5Q11.2) WILD-TYPE     53    135    216    106    200     48
                               vv
clus                            CLUS_7
  DEL PEAK  8(5Q11.2) MUTATED        5
  DEL PEAK  8(5Q11.2) WILD-TYPE     11
D36V7, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                         137                            53
  CLUS_2                           8                           135
  CLUS_3                          18                           216
  CLUS_4                          55                           106
  CLUS_5                          44                           200
  CLUS_6                           4                            48
  CLUS_7                           5                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q11.2) MUTATED      134     19     10     54     29     25
  DEL PEAK  8(5Q11.2) WILD-TYPE     44    224    187    126    155     33
D36V8, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                         134                            44
  CLUS_2                          19                           224
  CLUS_3                          10                           187
  CLUS_4                          54                           126
  CLUS_5                          29                           155
  CLUS_6                          25                            33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q11.2) MUTATED       23     59    178
  DEL PEAK  8(5Q11.2) WILD-TYPE    283    363    119
D36V9, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          23                           283
  CLUS_2                          59                           363
  CLUS_3                         178                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q11.2) MUTATED        7     19     71    105     58
  DEL PEAK  8(5Q11.2) WILD-TYPE    167    167    334     29     68
D36V10, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                           7                           167
  CLUS_2                          19                           167
  CLUS_3                          71                           334
  CLUS_4                         105                            29
  CLUS_5                          58                            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q11.2) MUTATED       37     18    131
  DEL PEAK  8(5Q11.2) WILD-TYPE    212    238     78
D36V11, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          37                           212
  CLUS_2                          18                           238
  CLUS_3                         131                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5Q11.2) MUTATED       93      6     33     21      4     29
  DEL PEAK  8(5Q11.2) WILD-TYPE     34     61    160    114    121     38
D36V12, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          93                            34
  CLUS_2                           6                            61
  CLUS_3                          33                           160
  CLUS_4                          21                           114
  CLUS_5                           4                           121
  CLUS_6                          29                            38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  9(5Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q21.3) MUTATED        2      5     19     71      7     24
  DEL PEAK  9(5Q21.3) WILD-TYPE     19     31    100     25    102     48
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK  9(5Q21.3) MUTATED        5      2
  DEL PEAK  9(5Q21.3) WILD-TYPE     15     38
D37V1, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                           2                            19
  CLUS_2                           5                            31
  CLUS_3                          19                           100
  CLUS_4                          71                            25
  CLUS_5                           7                           102
  CLUS_6                          24                            48
  CLUS_7                           5                            15
  CLUS_8                           2                            38
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q21.3) MUTATED       18     13     36     66      2
  DEL PEAK  9(5Q21.3) WILD-TYPE     83    139     78     22     56
D37V2, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                          18                            83
  CLUS_2                          13                           139
  CLUS_3                          36                            78
  CLUS_4                          66                            22
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q21.3) MUTATED       23     32      7    194      8
  DEL PEAK  9(5Q21.3) WILD-TYPE    376    208     92     70     34
D37V3, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                          23                           376
  CLUS_2                          32                           208
  CLUS_3                           7                            92
  CLUS_4                         194                            70
  CLUS_5                           8                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q21.3) MUTATED      106     10     28      6     30
  DEL PEAK  9(5Q21.3) WILD-TYPE     26    187    149     82     98
D37V4, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                         106                            26
  CLUS_2                          10                           187
  CLUS_3                          28                           149
  CLUS_4                           6                            82
  CLUS_5                          30                            98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q21.3) MUTATED       78     12     23
  DEL PEAK  9(5Q21.3) WILD-TYPE     71    120     94
D37V5, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                          78                            71
  CLUS_2                          12                           120
  CLUS_3                          23                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q21.3) MUTATED        5     16     62     21      9
  DEL PEAK  9(5Q21.3) WILD-TYPE     59     90     28     86     22
D37V6, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                          16                            90
  CLUS_3                          62                            28
  CLUS_4                          21                            86
  CLUS_5                           9                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q21.3) MUTATED      144      8     12     50     39      4
  DEL PEAK  9(5Q21.3) WILD-TYPE     46    135    222    111    205     48
                               vv
clus                            CLUS_7
  DEL PEAK  9(5Q21.3) MUTATED        6
  DEL PEAK  9(5Q21.3) WILD-TYPE     10
D37V7, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                         144                            46
  CLUS_2                           8                           135
  CLUS_3                          12                           222
  CLUS_4                          50                           111
  CLUS_5                          39                           205
  CLUS_6                           4                            48
  CLUS_7                           6                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q21.3) MUTATED      139     17      7     49     28     23
  DEL PEAK  9(5Q21.3) WILD-TYPE     39    226    190    131    156     35
D37V8, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                         139                            39
  CLUS_2                          17                           226
  CLUS_3                           7                           190
  CLUS_4                          49                           131
  CLUS_5                          28                           156
  CLUS_6                          23                            35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q21.3) MUTATED       18     55    181
  DEL PEAK  9(5Q21.3) WILD-TYPE    288    367    116
D37V9, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                          18                           288
  CLUS_2                          55                           367
  CLUS_3                         181                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q21.3) MUTATED        5     14     68    109     58
  DEL PEAK  9(5Q21.3) WILD-TYPE    169    172    337     25     68
D37V10, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                           5                           169
  CLUS_2                          14                           172
  CLUS_3                          68                           337
  CLUS_4                         109                            25
  CLUS_5                          58                            68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q21.3) MUTATED       28     18    129
  DEL PEAK  9(5Q21.3) WILD-TYPE    221    238     80
D37V11, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                          28                           221
  CLUS_2                          18                           238
  CLUS_3                         129                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q21.3) MUTATED       97      6     28     14      3     27
  DEL PEAK  9(5Q21.3) WILD-TYPE     30     61    165    121    122     40
D37V12, multiclass
        clus
vv       DEL PEAK  9(5Q21.3) MUTATED DEL PEAK  9(5Q21.3) WILD-TYPE
  CLUS_1                          97                            30
  CLUS_2                           6                            61
  CLUS_3                          28                           165
  CLUS_4                          14                           121
  CLUS_5                           3                           122
  CLUS_6                          27                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 10(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED        5      7     28     21     15      9
  DEL PEAK 10(6P25.3) WILD-TYPE     16     29     91     75     94     63
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 10(6P25.3) MUTATED        2      8
  DEL PEAK 10(6P25.3) WILD-TYPE     18     32
D38V1, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                           5                            16
  CLUS_2                           7                            29
  CLUS_3                          28                            91
  CLUS_4                          21                            75
  CLUS_5                          15                            94
  CLUS_6                           9                            63
  CLUS_7                           2                            18
  CLUS_8                           8                            32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.3) MUTATED       22     28     19     18      8
  DEL PEAK 10(6P25.3) WILD-TYPE     79    124     95     70     50
D38V2, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          22                            79
  CLUS_2                          28                           124
  CLUS_3                          19                            95
  CLUS_4                          18                            70
  CLUS_5                           8                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.3) MUTATED       41     73     19     61      8
  DEL PEAK 10(6P25.3) WILD-TYPE    358    167     80    203     34
D38V3, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          41                           358
  CLUS_2                          73                           167
  CLUS_3                          19                            80
  CLUS_4                          61                           203
  CLUS_5                           8                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.3) MUTATED       35     33     46     12     16
  DEL PEAK 10(6P25.3) WILD-TYPE     97    164    131     76    112
D38V4, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          35                            97
  CLUS_2                          33                           164
  CLUS_3                          46                           131
  CLUS_4                          12                            76
  CLUS_5                          16                           112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       35     24     20
  DEL PEAK 10(6P25.3) WILD-TYPE    114    108     97
D38V5, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          35                           114
  CLUS_2                          24                           108
  CLUS_3                          20                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.3) MUTATED        9     15     19     30      6
  DEL PEAK 10(6P25.3) WILD-TYPE     55     91     71     77     25
D38V6, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                           9                            55
  CLUS_2                          15                            91
  CLUS_3                          19                            71
  CLUS_4                          30                            77
  CLUS_5                           6                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED       45     15     41     29     64      6
  DEL PEAK 10(6P25.3) WILD-TYPE    145    128    193    132    180     46
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P25.3) MUTATED        1
  DEL PEAK 10(6P25.3) WILD-TYPE     15
D38V7, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          45                           145
  CLUS_2                          15                           128
  CLUS_3                          41                           193
  CLUS_4                          29                           132
  CLUS_5                          64                           180
  CLUS_6                           6                            46
  CLUS_7                           1                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED       41     35     33     36     47      9
  DEL PEAK 10(6P25.3) WILD-TYPE    137    208    164    144    137     49
D38V8, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          41                           137
  CLUS_2                          35                           208
  CLUS_3                          33                           164
  CLUS_4                          36                           144
  CLUS_5                          47                           137
  CLUS_6                           9                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       49     86     63
  DEL PEAK 10(6P25.3) WILD-TYPE    257    336    234
D38V9, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          49                           257
  CLUS_2                          86                           336
  CLUS_3                          63                           234
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.3) MUTATED       20     35     83     32     28
  DEL PEAK 10(6P25.3) WILD-TYPE    154    151    322    102     98
D38V10, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          20                           154
  CLUS_2                          35                           151
  CLUS_3                          83                           322
  CLUS_4                          32                           102
  CLUS_5                          28                            98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       58     38     47
  DEL PEAK 10(6P25.3) WILD-TYPE    191    218    162
D38V11, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          58                           191
  CLUS_2                          38                           218
  CLUS_3                          47                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED       31      5     55     22     16     14
  DEL PEAK 10(6P25.3) WILD-TYPE     96     62    138    113    109     53
D38V12, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          31                            96
  CLUS_2                           5                            62
  CLUS_3                          55                           138
  CLUS_4                          22                           113
  CLUS_5                          16                           109
  CLUS_6                          14                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 11(6Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q15) MUTATED        6     13     63     20     24     29      4
  DEL PEAK 11(6Q15) WILD-TYPE     15     23     56     76     85     43     16
                             vv
clus                          CLUS_8
  DEL PEAK 11(6Q15) MUTATED       16
  DEL PEAK 11(6Q15) WILD-TYPE     24
D39V1, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                         6                          15
  CLUS_2                        13                          23
  CLUS_3                        63                          56
  CLUS_4                        20                          76
  CLUS_5                        24                          85
  CLUS_6                        29                          43
  CLUS_7                         4                          16
  CLUS_8                        16                          24
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q15) MUTATED       50     51     42     18     14
  DEL PEAK 11(6Q15) WILD-TYPE     51    101     72     70     44
D39V2, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        50                          51
  CLUS_2                        51                         101
  CLUS_3                        42                          72
  CLUS_4                        18                          70
  CLUS_5                        14                          44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q15) MUTATED       85    152     30     51     23
  DEL PEAK 11(6Q15) WILD-TYPE    314     88     69    213     19
D39V3, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        85                         314
  CLUS_2                       152                          88
  CLUS_3                        30                          69
  CLUS_4                        51                         213
  CLUS_5                        23                          19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q15) MUTATED       26     81     73     21     25
  DEL PEAK 11(6Q15) WILD-TYPE    106    116    104     67    103
D39V4, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        26                         106
  CLUS_2                        81                         116
  CLUS_3                        73                         104
  CLUS_4                        21                          67
  CLUS_5                        25                         103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q15) MUTATED       46     50     41
  DEL PEAK 11(6Q15) WILD-TYPE    103     82     76
D39V5, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        46                         103
  CLUS_2                        50                          82
  CLUS_3                        41                          76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q15) MUTATED       17     34     24     51     11
  DEL PEAK 11(6Q15) WILD-TYPE     47     72     66     56     20
D39V6, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        17                          47
  CLUS_2                        34                          72
  CLUS_3                        24                          66
  CLUS_4                        51                          56
  CLUS_5                        11                          20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q15) MUTATED       31     42     72     56    123     12      4
  DEL PEAK 11(6Q15) WILD-TYPE    159    101    162    105    121     40     12
D39V7, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        31                         159
  CLUS_2                        42                         101
  CLUS_3                        72                         162
  CLUS_4                        56                         105
  CLUS_5                       123                         121
  CLUS_6                        12                          40
  CLUS_7                         4                          12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q15) MUTATED       28     79     50     65     98     20
  DEL PEAK 11(6Q15) WILD-TYPE    150    164    147    115     86     38
D39V8, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        28                         150
  CLUS_2                        79                         164
  CLUS_3                        50                         147
  CLUS_4                        65                         115
  CLUS_5                        98                          86
  CLUS_6                        20                          38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q15) MUTATED       95    164     79
  DEL PEAK 11(6Q15) WILD-TYPE    211    258    218
D39V9, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        95                         211
  CLUS_2                       164                         258
  CLUS_3                        79                         218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q15) MUTATED       47     81    150     21     39
  DEL PEAK 11(6Q15) WILD-TYPE    127    105    255    113     87
D39V10, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        47                         127
  CLUS_2                        81                         105
  CLUS_3                       150                         255
  CLUS_4                        21                         113
  CLUS_5                        39                          87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q15) MUTATED       99     80     52
  DEL PEAK 11(6Q15) WILD-TYPE    150    176    157
D39V11, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        99                         150
  CLUS_2                        80                         176
  CLUS_3                        52                         157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q15) MUTATED       21     19     82     56     33     20
  DEL PEAK 11(6Q15) WILD-TYPE    106     48    111     79     92     47
D39V12, multiclass
        clus
vv       DEL PEAK 11(6Q15) MUTATED DEL PEAK 11(6Q15) WILD-TYPE
  CLUS_1                        21                         106
  CLUS_2                        19                          48
  CLUS_3                        82                         111
  CLUS_4                        56                          79
  CLUS_5                        33                          92
  CLUS_6                        20                          47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 12(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(6Q27) MUTATED        9     13     57     34     25     27      7
  DEL PEAK 12(6Q27) WILD-TYPE     12     23     62     62     84     45     13
                             vv
clus                          CLUS_8
  DEL PEAK 12(6Q27) MUTATED       14
  DEL PEAK 12(6Q27) WILD-TYPE     26
D40V1, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                         9                          12
  CLUS_2                        13                          23
  CLUS_3                        57                          62
  CLUS_4                        34                          62
  CLUS_5                        25                          84
  CLUS_6                        27                          45
  CLUS_7                         7                          13
  CLUS_8                        14                          26
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q27) MUTATED       48     47     46     32     13
  DEL PEAK 12(6Q27) WILD-TYPE     53    105     68     56     45
D40V2, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        48                          53
  CLUS_2                        47                         105
  CLUS_3                        46                          68
  CLUS_4                        32                          56
  CLUS_5                        13                          45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q27) MUTATED       94    127     28     88     25
  DEL PEAK 12(6Q27) WILD-TYPE    305    113     71    176     17
D40V3, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        94                         305
  CLUS_2                       127                         113
  CLUS_3                        28                          71
  CLUS_4                        88                         176
  CLUS_5                        25                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q27) MUTATED       53     69     65     22     39
  DEL PEAK 12(6Q27) WILD-TYPE     79    128    112     66     89
D40V4, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        53                          79
  CLUS_2                        69                         128
  CLUS_3                        65                         112
  CLUS_4                        22                          66
  CLUS_5                        39                          89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       66     45     36
  DEL PEAK 12(6Q27) WILD-TYPE     83     87     81
D40V5, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        66                          83
  CLUS_2                        45                          87
  CLUS_3                        36                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q27) MUTATED       19     31     34     50     13
  DEL PEAK 12(6Q27) WILD-TYPE     45     75     56     57     18
D40V6, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        19                          45
  CLUS_2                        31                          75
  CLUS_3                        34                          56
  CLUS_4                        50                          57
  CLUS_5                        13                          18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 12(6Q27) MUTATED       66     44     65     59    110     12      4
  DEL PEAK 12(6Q27) WILD-TYPE    124     99    169    102    134     40     12
D40V7, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        66                         124
  CLUS_2                        44                          99
  CLUS_3                        65                         169
  CLUS_4                        59                         102
  CLUS_5                       110                         134
  CLUS_6                        12                          40
  CLUS_7                         4                          12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q27) MUTATED       61     82     46     62     82     27
  DEL PEAK 12(6Q27) WILD-TYPE    117    161    151    118    102     31
D40V8, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        61                         117
  CLUS_2                        82                         161
  CLUS_3                        46                         151
  CLUS_4                        62                         118
  CLUS_5                        82                         102
  CLUS_6                        27                          31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED      100    145    111
  DEL PEAK 12(6Q27) WILD-TYPE    206    277    186
D40V9, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                       100                         206
  CLUS_2                       145                         277
  CLUS_3                       111                         186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q27) MUTATED       49     73    139     45     50
  DEL PEAK 12(6Q27) WILD-TYPE    125    113    266     89     76
D40V10, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        49                         125
  CLUS_2                        73                         113
  CLUS_3                       139                         266
  CLUS_4                        45                          89
  CLUS_5                        50                          76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q27) MUTATED       86     81     74
  DEL PEAK 12(6Q27) WILD-TYPE    163    175    135
D40V11, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        86                         163
  CLUS_2                        81                         175
  CLUS_3                        74                         135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q27) MUTATED       42     21     71     45     36     26
  DEL PEAK 12(6Q27) WILD-TYPE     85     46    122     90     89     41
D40V12, multiclass
        clus
vv       DEL PEAK 12(6Q27) MUTATED DEL PEAK 12(6Q27) WILD-TYPE
  CLUS_1                        42                          85
  CLUS_2                        21                          46
  CLUS_3                        71                         122
  CLUS_4                        45                          90
  CLUS_5                        36                          89
  CLUS_6                        26                          41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 13(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7P22.3) MUTATED        4      3     24     25      2     12
  DEL PEAK 13(7P22.3) WILD-TYPE     17     33     95     71    107     60
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 13(7P22.3) MUTATED        2      4
  DEL PEAK 13(7P22.3) WILD-TYPE     18     36
D41V1, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           4                            17
  CLUS_2                           3                            33
  CLUS_3                          24                            95
  CLUS_4                          25                            71
  CLUS_5                           2                           107
  CLUS_6                          12                            60
  CLUS_7                           2                            18
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7P22.3) MUTATED       20      8     22     24      2
  DEL PEAK 13(7P22.3) WILD-TYPE     81    144     92     64     56
D41V2, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          20                            81
  CLUS_2                           8                           144
  CLUS_3                          22                            92
  CLUS_4                          24                            64
  CLUS_5                           2                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7P22.3) MUTATED       12     51      4     65      2
  DEL PEAK 13(7P22.3) WILD-TYPE    387    189     95    199     40
D41V3, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          12                           387
  CLUS_2                          51                           189
  CLUS_3                           4                            95
  CLUS_4                          65                           199
  CLUS_5                           2                            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7P22.3) MUTATED       30     12     25      6      5
  DEL PEAK 13(7P22.3) WILD-TYPE    102    185    152     82    123
D41V4, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          30                           102
  CLUS_2                          12                           185
  CLUS_3                          25                           152
  CLUS_4                           6                            82
  CLUS_5                           5                           123
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.3) MUTATED       33     13     10
  DEL PEAK 13(7P22.3) WILD-TYPE    116    119    107
D41V5, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          33                           116
  CLUS_2                          13                           119
  CLUS_3                          10                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7P22.3) MUTATED        5      8     23     16      4
  DEL PEAK 13(7P22.3) WILD-TYPE     59     98     67     91     27
D41V6, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           5                            59
  CLUS_2                           8                            98
  CLUS_3                          23                            67
  CLUS_4                          16                            91
  CLUS_5                           4                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7P22.3) MUTATED       49      6     11     27     37      1
  DEL PEAK 13(7P22.3) WILD-TYPE    141    137    223    134    207     51
                               vv
clus                            CLUS_7
  DEL PEAK 13(7P22.3) MUTATED        1
  DEL PEAK 13(7P22.3) WILD-TYPE     15
D41V7, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          49                           141
  CLUS_2                           6                           137
  CLUS_3                          11                           223
  CLUS_4                          27                           134
  CLUS_5                          37                           207
  CLUS_6                           1                            51
  CLUS_7                           1                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7P22.3) MUTATED       47      9     12     31     28      5
  DEL PEAK 13(7P22.3) WILD-TYPE    131    234    185    149    156     53
D41V8, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          47                           131
  CLUS_2                           9                           234
  CLUS_3                          12                           185
  CLUS_4                          31                           149
  CLUS_5                          28                           156
  CLUS_6                           5                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.3) MUTATED        8     55     67
  DEL PEAK 13(7P22.3) WILD-TYPE    298    367    230
D41V9, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           8                           298
  CLUS_2                          55                           367
  CLUS_3                          67                           230
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7P22.3) MUTATED        3      9     58     38     22
  DEL PEAK 13(7P22.3) WILD-TYPE    171    177    347     96    104
D41V10, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           3                           171
  CLUS_2                           9                           177
  CLUS_3                          58                           347
  CLUS_4                          38                            96
  CLUS_5                          22                           104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.3) MUTATED       22     12     43
  DEL PEAK 13(7P22.3) WILD-TYPE    227    244    166
D41V11, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          22                           227
  CLUS_2                          12                           244
  CLUS_3                          43                           166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7P22.3) MUTATED       32      1     24     13      2      5
  DEL PEAK 13(7P22.3) WILD-TYPE     95     66    169    122    123     62
D41V12, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          32                            95
  CLUS_2                           1                            66
  CLUS_3                          24                           169
  CLUS_4                          13                           122
  CLUS_5                           2                           123
  CLUS_6                           5                            62
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 14(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q36.1) MUTATED        6      7     22     21     10     26
  DEL PEAK 14(7Q36.1) WILD-TYPE     15     29     97     75     99     46
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 14(7Q36.1) MUTATED        4      6
  DEL PEAK 14(7Q36.1) WILD-TYPE     16     34
D42V1, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           7                            29
  CLUS_3                          22                            97
  CLUS_4                          21                            75
  CLUS_5                          10                            99
  CLUS_6                          26                            46
  CLUS_7                           4                            16
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q36.1) MUTATED       16     17     45     17      7
  DEL PEAK 14(7Q36.1) WILD-TYPE     85    135     69     71     51
D42V2, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          16                            85
  CLUS_2                          17                           135
  CLUS_3                          45                            69
  CLUS_4                          17                            71
  CLUS_5                           7                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q36.1) MUTATED       37     65     13     74      6
  DEL PEAK 14(7Q36.1) WILD-TYPE    362    175     86    190     36
D42V3, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          37                           362
  CLUS_2                          65                           175
  CLUS_3                          13                            86
  CLUS_4                          74                           190
  CLUS_5                           6                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q36.1) MUTATED       30     22     39     18     13
  DEL PEAK 14(7Q36.1) WILD-TYPE    102    175    138     70    115
D42V4, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          30                           102
  CLUS_2                          22                           175
  CLUS_3                          39                           138
  CLUS_4                          18                            70
  CLUS_5                          13                           115
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q36.1) MUTATED       34     22     19
  DEL PEAK 14(7Q36.1) WILD-TYPE    115    110     98
D42V5, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          34                           115
  CLUS_2                          22                           110
  CLUS_3                          19                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q36.1) MUTATED        8     15     19     21     12
  DEL PEAK 14(7Q36.1) WILD-TYPE     56     91     71     86     19
D42V6, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                          15                            91
  CLUS_3                          19                            71
  CLUS_4                          21                            86
  CLUS_5                          12                            19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q36.1) MUTATED       44     15     31     52     45      4
  DEL PEAK 14(7Q36.1) WILD-TYPE    146    128    203    109    199     48
                               vv
clus                            CLUS_7
  DEL PEAK 14(7Q36.1) MUTATED        2
  DEL PEAK 14(7Q36.1) WILD-TYPE     14
D42V7, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          44                           146
  CLUS_2                          15                           128
  CLUS_3                          31                           203
  CLUS_4                          52                           109
  CLUS_5                          45                           199
  CLUS_6                           4                            48
  CLUS_7                           2                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q36.1) MUTATED       38     28     23     48     38     18
  DEL PEAK 14(7Q36.1) WILD-TYPE    140    215    174    132    146     40
D42V8, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          38                           140
  CLUS_2                          28                           215
  CLUS_3                          23                           174
  CLUS_4                          48                           132
  CLUS_5                          38                           146
  CLUS_6                          18                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q36.1) MUTATED       25     82     83
  DEL PEAK 14(7Q36.1) WILD-TYPE    281    340    214
D42V9, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          25                           281
  CLUS_2                          82                           340
  CLUS_3                          83                           214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q36.1) MUTATED       11     24     88     29     38
  DEL PEAK 14(7Q36.1) WILD-TYPE    163    162    317    105     88
D42V10, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          11                           163
  CLUS_2                          24                           162
  CLUS_3                          88                           317
  CLUS_4                          29                           105
  CLUS_5                          38                            88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q36.1) MUTATED       46     22     60
  DEL PEAK 14(7Q36.1) WILD-TYPE    203    234    149
D42V11, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          46                           203
  CLUS_2                          22                           234
  CLUS_3                          60                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q36.1) MUTATED       33      7     43     20      5     20
  DEL PEAK 14(7Q36.1) WILD-TYPE     94     60    150    115    120     47
D42V12, multiclass
        clus
vv       DEL PEAK 14(7Q36.1) MUTATED DEL PEAK 14(7Q36.1) WILD-TYPE
  CLUS_1                          33                            94
  CLUS_2                           7                            60
  CLUS_3                          43                           150
  CLUS_4                          20                           115
  CLUS_5                           5                           120
  CLUS_6                          20                            47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 15(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       12     15     78     64     29     47
  DEL PEAK 15(8P23.2) WILD-TYPE      9     21     41     32     80     25
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 15(8P23.2) MUTATED       13     18
  DEL PEAK 15(8P23.2) WILD-TYPE      7     22
D43V1, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          12                             9
  CLUS_2                          15                            21
  CLUS_3                          78                            41
  CLUS_4                          64                            32
  CLUS_5                          29                            80
  CLUS_6                          47                            25
  CLUS_7                          13                             7
  CLUS_8                          18                            22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       67     59     78     57     15
  DEL PEAK 15(8P23.2) WILD-TYPE     34     93     36     31     43
D43V2, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          67                            34
  CLUS_2                          59                            93
  CLUS_3                          78                            36
  CLUS_4                          57                            31
  CLUS_5                          15                            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED      128    169     26    185     34
  DEL PEAK 15(8P23.2) WILD-TYPE    271     71     73     79      8
D43V3, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                         128                           271
  CLUS_2                         169                            71
  CLUS_3                          26                            73
  CLUS_4                         185                            79
  CLUS_5                          34                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       87     81    102     26     63
  DEL PEAK 15(8P23.2) WILD-TYPE     45    116     75     62     65
D43V4, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          87                            45
  CLUS_2                          81                           116
  CLUS_3                         102                            75
  CLUS_4                          26                            62
  CLUS_5                          63                            65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED       96     61     68
  DEL PEAK 15(8P23.2) WILD-TYPE     53     71     49
D43V5, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          96                            53
  CLUS_2                          61                            71
  CLUS_3                          68                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       22     57     58     66     22
  DEL PEAK 15(8P23.2) WILD-TYPE     42     49     32     41      9
D43V6, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          22                            42
  CLUS_2                          57                            49
  CLUS_3                          58                            32
  CLUS_4                          66                            41
  CLUS_5                          22                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED      119     53     73    109    151     22
  DEL PEAK 15(8P23.2) WILD-TYPE     71     90    161     52     93     30
                               vv
clus                            CLUS_7
  DEL PEAK 15(8P23.2) MUTATED       12
  DEL PEAK 15(8P23.2) WILD-TYPE      4
D43V7, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                         119                            71
  CLUS_2                          53                            90
  CLUS_3                          73                           161
  CLUS_4                         109                            52
  CLUS_5                         151                            93
  CLUS_6                          22                            30
  CLUS_7                          12                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED      112     95     51    119    115     47
  DEL PEAK 15(8P23.2) WILD-TYPE     66    148    146     61     69     11
D43V8, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                         112                            66
  CLUS_2                          95                           148
  CLUS_3                          51                           146
  CLUS_4                         119                            61
  CLUS_5                         115                            69
  CLUS_6                          47                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED      116    220    194
  DEL PEAK 15(8P23.2) WILD-TYPE    190    202    103
D43V9, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                         116                           190
  CLUS_2                         220                           202
  CLUS_3                         194                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P23.2) MUTATED       55     85    215     86     89
  DEL PEAK 15(8P23.2) WILD-TYPE    119    101    190     48     37
D43V10, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          55                           119
  CLUS_2                          85                           101
  CLUS_3                         215                           190
  CLUS_4                          86                            48
  CLUS_5                          89                            37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.2) MUTATED      123    101    138
  DEL PEAK 15(8P23.2) WILD-TYPE    126    155     71
D43V11, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                         123                           126
  CLUS_2                         101                           155
  CLUS_3                         138                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.2) MUTATED       81     21     95     73     42     50
  DEL PEAK 15(8P23.2) WILD-TYPE     46     46     98     62     83     17
D43V12, multiclass
        clus
vv       DEL PEAK 15(8P23.2) MUTATED DEL PEAK 15(8P23.2) WILD-TYPE
  CLUS_1                          81                            46
  CLUS_2                          21                            46
  CLUS_3                          95                            98
  CLUS_4                          73                            62
  CLUS_5                          42                            83
  CLUS_6                          50                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 16(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED        4      4     23     23      9     27
  DEL PEAK 16(8P11.21) WILD-TYPE     17     32     96     73    100     45
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 16(8P11.21) MUTATED        7      7
  DEL PEAK 16(8P11.21) WILD-TYPE     13     33
D44V1, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            4                             17
  CLUS_2                            4                             32
  CLUS_3                           23                             96
  CLUS_4                           23                             73
  CLUS_5                            9                            100
  CLUS_6                           27                             45
  CLUS_7                            7                             13
  CLUS_8                            7                             33
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       21     20     37     21      5
  DEL PEAK 16(8P11.21) WILD-TYPE     80    132     77     67     53
D44V2, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           21                             80
  CLUS_2                           20                            132
  CLUS_3                           37                             77
  CLUS_4                           21                             67
  CLUS_5                            5                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       45     56     13     84      1
  DEL PEAK 16(8P11.21) WILD-TYPE    354    184     86    180     41
D44V3, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           45                            354
  CLUS_2                           56                            184
  CLUS_3                           13                             86
  CLUS_4                           84                            180
  CLUS_5                            1                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       30     21     38     11     23
  DEL PEAK 16(8P11.21) WILD-TYPE    102    176    139     77    105
D44V4, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           30                            102
  CLUS_2                           21                            176
  CLUS_3                           38                            139
  CLUS_4                           11                             77
  CLUS_5                           23                            105
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       42     20     25
  DEL PEAK 16(8P11.21) WILD-TYPE    107    112     92
D44V5, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           42                            107
  CLUS_2                           20                            112
  CLUS_3                           25                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED        5     21     21     24     16
  DEL PEAK 16(8P11.21) WILD-TYPE     59     85     69     83     15
D44V6, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           21                             85
  CLUS_3                           21                             69
  CLUS_4                           24                             83
  CLUS_5                           16                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED       38     21     25     65     36      9
  DEL PEAK 16(8P11.21) WILD-TYPE    152    122    209     96    208     43
                                vv
clus                             CLUS_7
  DEL PEAK 16(8P11.21) MUTATED        5
  DEL PEAK 16(8P11.21) WILD-TYPE     11
D44V7, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           38                            152
  CLUS_2                           21                            122
  CLUS_3                           25                            209
  CLUS_4                           65                             96
  CLUS_5                           36                            208
  CLUS_6                            9                             43
  CLUS_7                            5                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED       35     30     20     59     30     25
  DEL PEAK 16(8P11.21) WILD-TYPE    143    213    177    121    154     33
D44V8, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           35                            143
  CLUS_2                           30                            213
  CLUS_3                           20                            177
  CLUS_4                           59                            121
  CLUS_5                           30                            154
  CLUS_6                           25                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       34     86     77
  DEL PEAK 16(8P11.21) WILD-TYPE    272    336    220
D44V9, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           34                            272
  CLUS_2                           86                            336
  CLUS_3                           77                            220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       16     20     87     24     50
  DEL PEAK 16(8P11.21) WILD-TYPE    158    166    318    110     76
D44V10, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           16                            158
  CLUS_2                           20                            166
  CLUS_3                           87                            318
  CLUS_4                           24                            110
  CLUS_5                           50                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       58     27     56
  DEL PEAK 16(8P11.21) WILD-TYPE    191    229    153
D44V11, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           58                            191
  CLUS_2                           27                            229
  CLUS_3                           56                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(8P11.21) MUTATED       28      7     52     10     17     27
  DEL PEAK 16(8P11.21) WILD-TYPE     99     60    141    125    108     40
D44V12, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           28                             99
  CLUS_2                            7                             60
  CLUS_3                           52                            141
  CLUS_4                           10                            125
  CLUS_5                           17                            108
  CLUS_6                           27                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 17(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(9P23) MUTATED        9     15     57     21     22     34     10
  DEL PEAK 17(9P23) WILD-TYPE     12     21     62     75     87     38     10
                             vv
clus                          CLUS_8
  DEL PEAK 17(9P23) MUTATED        5
  DEL PEAK 17(9P23) WILD-TYPE     35
D45V1, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         9                          12
  CLUS_2                        15                          21
  CLUS_3                        57                          62
  CLUS_4                        21                          75
  CLUS_5                        22                          87
  CLUS_6                        34                          38
  CLUS_7                        10                          10
  CLUS_8                         5                          35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       49     36     61     17     10
  DEL PEAK 17(9P23) WILD-TYPE     52    116     53     71     48
D45V2, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        49                          52
  CLUS_2                        36                         116
  CLUS_3                        61                          53
  CLUS_4                        17                          71
  CLUS_5                        10                          48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       43    153     18     97      8
  DEL PEAK 17(9P23) WILD-TYPE    356     87     81    167     34
D45V3, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        43                         356
  CLUS_2                       153                          87
  CLUS_3                        18                          81
  CLUS_4                        97                         167
  CLUS_5                         8                          34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       37     43     90     14     25
  DEL PEAK 17(9P23) WILD-TYPE     95    154     87     74    103
D45V4, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        37                          95
  CLUS_2                        43                         154
  CLUS_3                        90                          87
  CLUS_4                        14                          74
  CLUS_5                        25                         103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       66     42     32
  DEL PEAK 17(9P23) WILD-TYPE     83     90     85
D45V5, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        66                          83
  CLUS_2                        42                          90
  CLUS_3                        32                          85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       15     31     26     53     15
  DEL PEAK 17(9P23) WILD-TYPE     49     75     64     54     16
D45V6, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        15                          49
  CLUS_2                        31                          75
  CLUS_3                        26                          64
  CLUS_4                        53                          54
  CLUS_5                        15                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(9P23) MUTATED       41     26     43     74    118      9      8
  DEL PEAK 17(9P23) WILD-TYPE    149    117    191     87    126     43      8
D45V7, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        41                         149
  CLUS_2                        26                         117
  CLUS_3                        43                         191
  CLUS_4                        74                          87
  CLUS_5                       118                         126
  CLUS_6                         9                          43
  CLUS_7                         8                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P23) MUTATED       34     41     29     92     94     29
  DEL PEAK 17(9P23) WILD-TYPE    144    202    168     88     90     29
D45V8, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        34                         144
  CLUS_2                        41                         202
  CLUS_3                        29                         168
  CLUS_4                        92                          88
  CLUS_5                        94                          90
  CLUS_6                        29                          29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       56    156    100
  DEL PEAK 17(9P23) WILD-TYPE    250    266    197
D45V9, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        56                         250
  CLUS_2                       156                         266
  CLUS_3                       100                         197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED       17     50    161     21     63
  DEL PEAK 17(9P23) WILD-TYPE    157    136    244    113     63
D45V10, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        17                         157
  CLUS_2                        50                         136
  CLUS_3                       161                         244
  CLUS_4                        21                         113
  CLUS_5                        63                          63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       83     50     72
  DEL PEAK 17(9P23) WILD-TYPE    166    206    137
D45V11, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        83                         166
  CLUS_2                        50                         206
  CLUS_3                        72                         137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9P23) MUTATED       28      8     75     42     14     38
  DEL PEAK 17(9P23) WILD-TYPE     99     59    118     93    111     29
D45V12, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        28                          99
  CLUS_2                         8                          59
  CLUS_3                        75                         118
  CLUS_4                        42                          93
  CLUS_5                        14                         111
  CLUS_6                        38                          29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 18(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED        9     12     62     33     24     38
  DEL PEAK 18(9P21.3) WILD-TYPE     12     24     57     63     85     34
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 18(9P21.3) MUTATED        8      6
  DEL PEAK 18(9P21.3) WILD-TYPE     12     34
D46V1, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                           9                            12
  CLUS_2                          12                            24
  CLUS_3                          62                            57
  CLUS_4                          33                            63
  CLUS_5                          24                            85
  CLUS_6                          38                            34
  CLUS_7                           8                            12
  CLUS_8                           6                            34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       53     34     65     28     12
  DEL PEAK 18(9P21.3) WILD-TYPE     48    118     49     60     46
D46V2, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          53                            48
  CLUS_2                          34                           118
  CLUS_3                          65                            49
  CLUS_4                          28                            60
  CLUS_5                          12                            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       50    158     20    120      9
  DEL PEAK 18(9P21.3) WILD-TYPE    349     82     79    144     33
D46V3, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          50                           349
  CLUS_2                         158                            82
  CLUS_3                          20                            79
  CLUS_4                         120                           144
  CLUS_5                           9                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       51     49     86     14     28
  DEL PEAK 18(9P21.3) WILD-TYPE     81    148     91     74    100
D46V4, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          51                            81
  CLUS_2                          49                           148
  CLUS_3                          86                            91
  CLUS_4                          14                            74
  CLUS_5                          28                           100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       73     44     37
  DEL PEAK 18(9P21.3) WILD-TYPE     76     88     80
D46V5, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          73                            76
  CLUS_2                          44                            88
  CLUS_3                          37                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       17     33     34     53     17
  DEL PEAK 18(9P21.3) WILD-TYPE     47     73     56     54     14
D46V6, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          33                            73
  CLUS_3                          34                            56
  CLUS_4                          53                            54
  CLUS_5                          17                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED       66     25     47     78    123      9
  DEL PEAK 18(9P21.3) WILD-TYPE    124    118    187     83    121     43
                               vv
clus                            CLUS_7
  DEL PEAK 18(9P21.3) MUTATED        7
  DEL PEAK 18(9P21.3) WILD-TYPE      9
D46V7, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          66                           124
  CLUS_2                          25                           118
  CLUS_3                          47                           187
  CLUS_4                          78                            83
  CLUS_5                         123                           121
  CLUS_6                           9                            43
  CLUS_7                           7                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED       60     39     34     94     97     31
  DEL PEAK 18(9P21.3) WILD-TYPE    118    204    163     86     87     27
D46V8, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          60                           118
  CLUS_2                          39                           204
  CLUS_3                          34                           163
  CLUS_4                          94                            86
  CLUS_5                          97                            87
  CLUS_6                          31                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       55    169    123
  DEL PEAK 18(9P21.3) WILD-TYPE    251    253    174
D46V9, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          55                           251
  CLUS_2                         169                           253
  CLUS_3                         123                           174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(9P21.3) MUTATED       19     52    167     42     67
  DEL PEAK 18(9P21.3) WILD-TYPE    155    134    238     92     59
D46V10, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          19                           155
  CLUS_2                          52                           134
  CLUS_3                         167                           238
  CLUS_4                          42                            92
  CLUS_5                          67                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(9P21.3) MUTATED       87     52     88
  DEL PEAK 18(9P21.3) WILD-TYPE    162    204    121
D46V11, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          87                           162
  CLUS_2                          52                           204
  CLUS_3                          88                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(9P21.3) MUTATED       44      9     76     47     12     39
  DEL PEAK 18(9P21.3) WILD-TYPE     83     58    117     88    113     28
D46V12, multiclass
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  CLUS_1                          44                            83
  CLUS_2                           9                            58
  CLUS_3                          76                           117
  CLUS_4                          47                            88
  CLUS_5                          12                           113
  CLUS_6                          39                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 19(9Q21.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED        5      6     42     41     24     27
  DEL PEAK 19(9Q21.11) WILD-TYPE     16     30     77     55     85     45
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 19(9Q21.11) MUTATED        7      5
  DEL PEAK 19(9Q21.11) WILD-TYPE     13     35
D47V1, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            6                             30
  CLUS_3                           42                             77
  CLUS_4                           41                             55
  CLUS_5                           24                             85
  CLUS_6                           27                             45
  CLUS_7                            7                             13
  CLUS_8                            5                             35
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       37     25     50     35     10
  DEL PEAK 19(9Q21.11) WILD-TYPE     64    127     64     53     48
D47V2, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           37                             64
  CLUS_2                           25                            127
  CLUS_3                           50                             64
  CLUS_4                           35                             53
  CLUS_5                           10                             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       36    110     21    110     12
  DEL PEAK 19(9Q21.11) WILD-TYPE    363    130     78    154     30
D47V3, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           36                            363
  CLUS_2                          110                            130
  CLUS_3                           21                             78
  CLUS_4                          110                            154
  CLUS_5                           12                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       55     40     54     12     26
  DEL PEAK 19(9Q21.11) WILD-TYPE     77    157    123     76    102
D47V4, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           55                             77
  CLUS_2                           40                            157
  CLUS_3                           54                            123
  CLUS_4                           12                             76
  CLUS_5                           26                            102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       69     33     22
  DEL PEAK 19(9Q21.11) WILD-TYPE     80     99     95
D47V5, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           69                             80
  CLUS_2                           33                             99
  CLUS_3                           22                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       15     22     38     37     12
  DEL PEAK 19(9Q21.11) WILD-TYPE     49     84     52     70     19
D47V6, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                           22                             84
  CLUS_3                           38                             52
  CLUS_4                           37                             70
  CLUS_5                           12                             19
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED       74     15     46     50     90      7
  DEL PEAK 19(9Q21.11) WILD-TYPE    116    128    188    111    154     45
                                vv
clus                             CLUS_7
  DEL PEAK 19(9Q21.11) MUTATED        7
  DEL PEAK 19(9Q21.11) WILD-TYPE      9
D47V7, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           74                            116
  CLUS_2                           15                            128
  CLUS_3                           46                            188
  CLUS_4                           50                            111
  CLUS_5                           90                            154
  CLUS_6                            7                             45
  CLUS_7                            7                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED       68     31     26     69     73     22
  DEL PEAK 19(9Q21.11) WILD-TYPE    110    212    171    111    111     36
D47V8, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           68                            110
  CLUS_2                           31                            212
  CLUS_3                           26                            171
  CLUS_4                           69                            111
  CLUS_5                           73                            111
  CLUS_6                           22                             36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       42    117    123
  DEL PEAK 19(9Q21.11) WILD-TYPE    264    305    174
D47V9, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           42                            264
  CLUS_2                          117                            305
  CLUS_3                          123                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(9Q21.11) MUTATED       13     36    121     54     58
  DEL PEAK 19(9Q21.11) WILD-TYPE    161    150    284     80     68
D47V10, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           13                            161
  CLUS_2                           36                            150
  CLUS_3                          121                            284
  CLUS_4                           54                             80
  CLUS_5                           58                             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(9Q21.11) MUTATED       59     43     85
  DEL PEAK 19(9Q21.11) WILD-TYPE    190    213    124
D47V11, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           59                            190
  CLUS_2                           43                            213
  CLUS_3                           85                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(9Q21.11) MUTATED       50      5     53     36     10     33
  DEL PEAK 19(9Q21.11) WILD-TYPE     77     62    140     99    115     34
D47V12, multiclass
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  CLUS_1                           50                             77
  CLUS_2                            5                             62
  CLUS_3                           53                            140
  CLUS_4                           36                             99
  CLUS_5                           10                            115
  CLUS_6                           33                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 20(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9Q34.2) MUTATED        6      4     40     55     23     18
  DEL PEAK 20(9Q34.2) WILD-TYPE     15     32     79     41     86     54
                               vv
clus                            CLUS_7 CLUS_8
  DEL PEAK 20(9Q34.2) MUTATED        7      4
  DEL PEAK 20(9Q34.2) WILD-TYPE     13     36
D48V1, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                           6                            15
  CLUS_2                           4                            32
  CLUS_3                          40                            79
  CLUS_4                          55                            41
  CLUS_5                          23                            86
  CLUS_6                          18                            54
  CLUS_7                           7                            13
  CLUS_8                           4                            36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9Q34.2) MUTATED       36     23     38     50     10
  DEL PEAK 20(9Q34.2) WILD-TYPE     65    129     76     38     48
D48V2, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          36                            65
  CLUS_2                          23                           129
  CLUS_3                          38                            76
  CLUS_4                          50                            38
  CLUS_5                          10                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9Q34.2) MUTATED       25     98     17    141     12
  DEL PEAK 20(9Q34.2) WILD-TYPE    374    142     82    123     30
D48V3, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          25                           374
  CLUS_2                          98                           142
  CLUS_3                          17                            82
  CLUS_4                         141                           123
  CLUS_5                          12                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9Q34.2) MUTATED       74     37     47     10     21
  DEL PEAK 20(9Q34.2) WILD-TYPE     58    160    130     78    107
D48V4, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          74                            58
  CLUS_2                          37                           160
  CLUS_3                          47                           130
  CLUS_4                          10                            78
  CLUS_5                          21                           107
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED       68     33     21
  DEL PEAK 20(9Q34.2) WILD-TYPE     81     99     96
D48V5, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          68                            81
  CLUS_2                          33                            99
  CLUS_3                          21                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9Q34.2) MUTATED       12     20     50     37      3
  DEL PEAK 20(9Q34.2) WILD-TYPE     52     86     40     70     28
D48V6, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          12                            52
  CLUS_2                          20                            86
  CLUS_3                          50                            40
  CLUS_4                          37                            70
  CLUS_5                           3                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9Q34.2) MUTATED      107     10     45     37     82      4
  DEL PEAK 20(9Q34.2) WILD-TYPE     83    133    189    124    162     48
                               vv
clus                            CLUS_7
  DEL PEAK 20(9Q34.2) MUTATED        7
  DEL PEAK 20(9Q34.2) WILD-TYPE      9
D48V7, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                         107                            83
  CLUS_2                          10                           133
  CLUS_3                          45                           189
  CLUS_4                          37                           124
  CLUS_5                          82                           162
  CLUS_6                           4                            48
  CLUS_7                           7                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9Q34.2) MUTATED      101     23     27     58     68     15
  DEL PEAK 20(9Q34.2) WILD-TYPE     77    220    170    122    116     43
D48V8, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                         101                            77
  CLUS_2                          23                           220
  CLUS_3                          27                           170
  CLUS_4                          58                           122
  CLUS_5                          68                           116
  CLUS_6                          15                            43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED       34    108    142
  DEL PEAK 20(9Q34.2) WILD-TYPE    272    314    155
D48V9, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          34                           272
  CLUS_2                         108                           314
  CLUS_3                         142                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9Q34.2) MUTATED       13     35    106     79     51
  DEL PEAK 20(9Q34.2) WILD-TYPE    161    151    299     55     75
D48V10, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          13                           161
  CLUS_2                          35                           151
  CLUS_3                         106                           299
  CLUS_4                          79                            55
  CLUS_5                          51                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9Q34.2) MUTATED       51     36    104
  DEL PEAK 20(9Q34.2) WILD-TYPE    198    220    105
D48V11, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          51                           198
  CLUS_2                          36                           220
  CLUS_3                         104                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9Q34.2) MUTATED       72      5     49     29     10     26
  DEL PEAK 20(9Q34.2) WILD-TYPE     55     62    144    106    115     41
D48V12, multiclass
        clus
vv       DEL PEAK 20(9Q34.2) MUTATED DEL PEAK 20(9Q34.2) WILD-TYPE
  CLUS_1                          72                            55
  CLUS_2                           5                            62
  CLUS_3                          49                           144
  CLUS_4                          29                           106
  CLUS_5                          10                           115
  CLUS_6                          26                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 21(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q23.31) MUTATED        7      6     36     49     20     21
  DEL PEAK 21(10Q23.31) WILD-TYPE     14     30     83     47     89     51
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 21(10Q23.31) MUTATED        7      3
  DEL PEAK 21(10Q23.31) WILD-TYPE     13     37
D49V1, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                             7                              14
  CLUS_2                             6                              30
  CLUS_3                            36                              83
  CLUS_4                            49                              47
  CLUS_5                            20                              89
  CLUS_6                            21                              51
  CLUS_7                             7                              13
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q23.31) MUTATED       28     29     39     45      8
  DEL PEAK 21(10Q23.31) WILD-TYPE     73    123     75     43     50
D49V2, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            28                              73
  CLUS_2                            29                             123
  CLUS_3                            39                              75
  CLUS_4                            45                              43
  CLUS_5                             8                              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q23.31) MUTATED       50     82     27    138     16
  DEL PEAK 21(10Q23.31) WILD-TYPE    349    158     72    126     26
D49V3, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            50                             349
  CLUS_2                            82                             158
  CLUS_3                            27                              72
  CLUS_4                           138                             126
  CLUS_5                            16                              26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q23.31) MUTATED       76     40     65     17     26
  DEL PEAK 21(10Q23.31) WILD-TYPE     56    157    112     71    102
D49V4, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            76                              56
  CLUS_2                            40                             157
  CLUS_3                            65                             112
  CLUS_4                            17                              71
  CLUS_5                            26                             102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q23.31) MUTATED       68     30     20
  DEL PEAK 21(10Q23.31) WILD-TYPE     81    102     97
D49V5, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            68                              81
  CLUS_2                            30                             102
  CLUS_3                            20                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q23.31) MUTATED       12     17     45     34     10
  DEL PEAK 21(10Q23.31) WILD-TYPE     52     89     45     73     21
D49V6, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            12                              52
  CLUS_2                            17                              89
  CLUS_3                            45                              45
  CLUS_4                            34                              73
  CLUS_5                            10                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q23.31) MUTATED       99     23     41     62     80      4
  DEL PEAK 21(10Q23.31) WILD-TYPE     91    120    193     99    164     48
                                 vv
clus                              CLUS_7
  DEL PEAK 21(10Q23.31) MUTATED        2
  DEL PEAK 21(10Q23.31) WILD-TYPE     14
D49V7, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            99                              91
  CLUS_2                            23                             120
  CLUS_3                            41                             193
  CLUS_4                            62                              99
  CLUS_5                            80                             164
  CLUS_6                             4                              48
  CLUS_7                             2                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q23.31) MUTATED       94     37     30     71     57     22
  DEL PEAK 21(10Q23.31) WILD-TYPE     84    206    167    109    127     36
D49V8, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            94                              84
  CLUS_2                            37                             206
  CLUS_3                            30                             167
  CLUS_4                            71                             109
  CLUS_5                            57                             127
  CLUS_6                            22                              36
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q23.31) MUTATED       64    104    136
  DEL PEAK 21(10Q23.31) WILD-TYPE    242    318    161
D49V9, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            64                             242
  CLUS_2                           104                             318
  CLUS_3                           136                             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(10Q23.31) MUTATED       22     40    113     72     57
  DEL PEAK 21(10Q23.31) WILD-TYPE    152    146    292     62     69
D49V10, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            22                             152
  CLUS_2                            40                             146
  CLUS_3                           113                             292
  CLUS_4                            72                              62
  CLUS_5                            57                              69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(10Q23.31) MUTATED       59     53    100
  DEL PEAK 21(10Q23.31) WILD-TYPE    190    203    109
D49V11, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            59                             190
  CLUS_2                            53                             203
  CLUS_3                           100                             109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(10Q23.31) MUTATED       71     10     49     38     20     24
  DEL PEAK 21(10Q23.31) WILD-TYPE     56     57    144     97    105     43
D49V12, multiclass
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  CLUS_1                            71                              56
  CLUS_2                            10                              57
  CLUS_3                            49                             144
  CLUS_4                            38                              97
  CLUS_5                            20                             105
  CLUS_6                            24                              43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 22(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10Q26.3) MUTATED        8      7     38     55     14     22
  DEL PEAK 22(10Q26.3) WILD-TYPE     13     29     81     41     95     50
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 22(10Q26.3) MUTATED        6      4
  DEL PEAK 22(10Q26.3) WILD-TYPE     14     36
D50V1, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                            7                             29
  CLUS_3                           38                             81
  CLUS_4                           55                             41
  CLUS_5                           14                             95
  CLUS_6                           22                             50
  CLUS_7                            6                             14
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10Q26.3) MUTATED       31     23     44     49      7
  DEL PEAK 22(10Q26.3) WILD-TYPE     70    129     70     39     51
D50V2, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           23                            129
  CLUS_3                           44                             70
  CLUS_4                           49                             39
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10Q26.3) MUTATED       47     88     23    142     11
  DEL PEAK 22(10Q26.3) WILD-TYPE    352    152     76    122     31
D50V3, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           47                            352
  CLUS_2                           88                            152
  CLUS_3                           23                             76
  CLUS_4                          142                            122
  CLUS_5                           11                             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10Q26.3) MUTATED       75     37     68     12     24
  DEL PEAK 22(10Q26.3) WILD-TYPE     57    160    109     76    104
D50V4, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           75                             57
  CLUS_2                           37                            160
  CLUS_3                           68                            109
  CLUS_4                           12                             76
  CLUS_5                           24                            104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q26.3) MUTATED       73     28     24
  DEL PEAK 22(10Q26.3) WILD-TYPE     76    104     93
D50V5, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           73                             76
  CLUS_2                           28                            104
  CLUS_3                           24                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10Q26.3) MUTATED       11     16     48     36     14
  DEL PEAK 22(10Q26.3) WILD-TYPE     53     90     42     71     17
D50V6, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           16                             90
  CLUS_3                           48                             42
  CLUS_4                           36                             71
  CLUS_5                           14                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10Q26.3) MUTATED      105     17     34     66     79      7
  DEL PEAK 22(10Q26.3) WILD-TYPE     85    126    200     95    165     45
                                vv
clus                             CLUS_7
  DEL PEAK 22(10Q26.3) MUTATED        2
  DEL PEAK 22(10Q26.3) WILD-TYPE     14
D50V7, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                          105                             85
  CLUS_2                           17                            126
  CLUS_3                           34                            200
  CLUS_4                           66                             95
  CLUS_5                           79                            165
  CLUS_6                            7                             45
  CLUS_7                            2                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10Q26.3) MUTATED       96     33     27     76     53     25
  DEL PEAK 22(10Q26.3) WILD-TYPE     82    210    170    104    131     33
D50V8, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           96                             82
  CLUS_2                           33                            210
  CLUS_3                           27                            170
  CLUS_4                           76                            104
  CLUS_5                           53                            131
  CLUS_6                           25                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q26.3) MUTATED       55    105    140
  DEL PEAK 22(10Q26.3) WILD-TYPE    251    317    157
D50V9, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           55                            251
  CLUS_2                          105                            317
  CLUS_3                          140                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(10Q26.3) MUTATED       19     35    116     72     58
  DEL PEAK 22(10Q26.3) WILD-TYPE    155    151    289     62     68
D50V10, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           19                            155
  CLUS_2                           35                            151
  CLUS_3                          116                            289
  CLUS_4                           72                             62
  CLUS_5                           58                             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(10Q26.3) MUTATED       66     47     99
  DEL PEAK 22(10Q26.3) WILD-TYPE    183    209    110
D50V11, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           66                            183
  CLUS_2                           47                            209
  CLUS_3                           99                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(10Q26.3) MUTATED       68     10     54     34     17     29
  DEL PEAK 22(10Q26.3) WILD-TYPE     59     57    139    101    108     38
D50V12, multiclass
        clus
vv       DEL PEAK 22(10Q26.3) MUTATED DEL PEAK 22(10Q26.3) WILD-TYPE
  CLUS_1                           68                             59
  CLUS_2                           10                             57
  CLUS_3                           54                            139
  CLUS_4                           34                            101
  CLUS_5                           17                            108
  CLUS_6                           29                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 23(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11P15.5) MUTATED        3      8     33     48     14     34
  DEL PEAK 23(11P15.5) WILD-TYPE     18     28     86     48     95     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 23(11P15.5) MUTATED        7      9
  DEL PEAK 23(11P15.5) WILD-TYPE     13     31
D51V1, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            8                             28
  CLUS_3                           33                             86
  CLUS_4                           48                             48
  CLUS_5                           14                             95
  CLUS_6                           34                             38
  CLUS_7                            7                             13
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11P15.5) MUTATED       24     32     50     42      8
  DEL PEAK 23(11P15.5) WILD-TYPE     77    120     64     46     50
D51V2, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           24                             77
  CLUS_2                           32                            120
  CLUS_3                           50                             64
  CLUS_4                           42                             46
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11P15.5) MUTATED       34     84     19    158      7
  DEL PEAK 23(11P15.5) WILD-TYPE    365    156     80    106     35
D51V3, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           34                            365
  CLUS_2                           84                            156
  CLUS_3                           19                             80
  CLUS_4                          158                            106
  CLUS_5                            7                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11P15.5) MUTATED       69     33     57     15     22
  DEL PEAK 23(11P15.5) WILD-TYPE     63    164    120     73    106
D51V4, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           69                             63
  CLUS_2                           33                            164
  CLUS_3                           57                            120
  CLUS_4                           15                             73
  CLUS_5                           22                            106
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.5) MUTATED       77     27     26
  DEL PEAK 23(11P15.5) WILD-TYPE     72    105     91
D51V5, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           77                             72
  CLUS_2                           27                            105
  CLUS_3                           26                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11P15.5) MUTATED       11     20     48     36     15
  DEL PEAK 23(11P15.5) WILD-TYPE     53     86     42     71     16
D51V6, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           20                             86
  CLUS_3                           48                             42
  CLUS_4                           36                             71
  CLUS_5                           15                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11P15.5) MUTATED       95     21     31     68     73     10
  DEL PEAK 23(11P15.5) WILD-TYPE     95    122    203     93    171     42
                                vv
clus                             CLUS_7
  DEL PEAK 23(11P15.5) MUTATED        4
  DEL PEAK 23(11P15.5) WILD-TYPE     12
D51V7, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           95                             95
  CLUS_2                           21                            122
  CLUS_3                           31                            203
  CLUS_4                           68                             93
  CLUS_5                           73                            171
  CLUS_6                           10                             42
  CLUS_7                            4                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11P15.5) MUTATED       89     41     23     68     53     28
  DEL PEAK 23(11P15.5) WILD-TYPE     89    202    174    112    131     30
D51V8, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           89                             89
  CLUS_2                           41                            202
  CLUS_3                           23                            174
  CLUS_4                           68                            112
  CLUS_5                           53                            131
  CLUS_6                           28                             30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.5) MUTATED       53     94    147
  DEL PEAK 23(11P15.5) WILD-TYPE    253    328    150
D51V9, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           53                            253
  CLUS_2                           94                            328
  CLUS_3                          147                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(11P15.5) MUTATED       18     31    116     69     60
  DEL PEAK 23(11P15.5) WILD-TYPE    156    155    289     65     66
D51V10, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           18                            156
  CLUS_2                           31                            155
  CLUS_3                          116                            289
  CLUS_4                           69                             65
  CLUS_5                           60                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(11P15.5) MUTATED       53     44    103
  DEL PEAK 23(11P15.5) WILD-TYPE    196    212    106
D51V11, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           53                            196
  CLUS_2                           44                            212
  CLUS_3                          103                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(11P15.5) MUTATED       64      9     54     31     15     27
  DEL PEAK 23(11P15.5) WILD-TYPE     63     58    139    104    110     40
D51V12, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           64                             63
  CLUS_2                            9                             58
  CLUS_3                           54                            139
  CLUS_4                           31                            104
  CLUS_5                           15                            110
  CLUS_6                           27                             40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 24(11Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q13.1) MUTATED        3      7     45     21     16     19
  DEL PEAK 24(11Q13.1) WILD-TYPE     18     29     74     75     93     53
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 24(11Q13.1) MUTATED        2      9
  DEL PEAK 24(11Q13.1) WILD-TYPE     18     31
D52V1, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                            7                             29
  CLUS_3                           45                             74
  CLUS_4                           21                             75
  CLUS_5                           16                             93
  CLUS_6                           19                             53
  CLUS_7                            2                             18
  CLUS_8                            9                             31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q13.1) MUTATED       39     29     26     20      8
  DEL PEAK 24(11Q13.1) WILD-TYPE     62    123     88     68     50
D52V2, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           39                             62
  CLUS_2                           29                            123
  CLUS_3                           26                             88
  CLUS_4                           20                             68
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q13.1) MUTATED       47     89     27     61      9
  DEL PEAK 24(11Q13.1) WILD-TYPE    352    151     72    203     33
D52V3, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           47                            352
  CLUS_2                           89                            151
  CLUS_3                           27                             72
  CLUS_4                           61                            203
  CLUS_5                            9                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q13.1) MUTATED       31     39     62     11     16
  DEL PEAK 24(11Q13.1) WILD-TYPE    101    158    115     77    112
D52V4, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           31                            101
  CLUS_2                           39                            158
  CLUS_3                           62                            115
  CLUS_4                           11                             77
  CLUS_5                           16                            112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q13.1) MUTATED       36     34     22
  DEL PEAK 24(11Q13.1) WILD-TYPE    113     98     95
D52V5, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           36                            113
  CLUS_2                           34                             98
  CLUS_3                           22                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q13.1) MUTATED        9     19     20     36      8
  DEL PEAK 24(11Q13.1) WILD-TYPE     55     87     70     71     23
D52V6, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           19                             87
  CLUS_3                           20                             70
  CLUS_4                           36                             71
  CLUS_5                            8                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q13.1) MUTATED       41     19     33     33     93     10
  DEL PEAK 24(11Q13.1) WILD-TYPE    149    124    201    128    151     42
                                vv
clus                             CLUS_7
  DEL PEAK 24(11Q13.1) MUTATED        3
  DEL PEAK 24(11Q13.1) WILD-TYPE     13
D52V7, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           41                            149
  CLUS_2                           19                            124
  CLUS_3                           33                            201
  CLUS_4                           33                            128
  CLUS_5                           93                            151
  CLUS_6                           10                             42
  CLUS_7                            3                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q13.1) MUTATED       38     40     23     45     76     10
  DEL PEAK 24(11Q13.1) WILD-TYPE    140    203    174    135    108     48
D52V8, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           38                            140
  CLUS_2                           40                            203
  CLUS_3                           23                            174
  CLUS_4                           45                            135
  CLUS_5                           76                            108
  CLUS_6                           10                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q13.1) MUTATED       60     96     74
  DEL PEAK 24(11Q13.1) WILD-TYPE    246    326    223
D52V9, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           60                            246
  CLUS_2                           96                            326
  CLUS_3                           74                            223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11Q13.1) MUTATED       21     46    105     30     28
  DEL PEAK 24(11Q13.1) WILD-TYPE    153    140    300    104     98
D52V10, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           21                            153
  CLUS_2                           46                            140
  CLUS_3                          105                            300
  CLUS_4                           30                            104
  CLUS_5                           28                             98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11Q13.1) MUTATED       63     50     45
  DEL PEAK 24(11Q13.1) WILD-TYPE    186    206    164
D52V11, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           63                            186
  CLUS_2                           50                            206
  CLUS_3                           45                            164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11Q13.1) MUTATED       27     10     54     38     17     12
  DEL PEAK 24(11Q13.1) WILD-TYPE    100     57    139     97    108     55
D52V12, multiclass
        clus
vv       DEL PEAK 24(11Q13.1) MUTATED DEL PEAK 24(11Q13.1) WILD-TYPE
  CLUS_1                           27                            100
  CLUS_2                           10                             57
  CLUS_3                           54                            139
  CLUS_4                           38                             97
  CLUS_5                           17                            108
  CLUS_6                           12                             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 25(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q23.2) MUTATED       12     21     89     41     36     38
  DEL PEAK 25(11Q23.2) WILD-TYPE      9     15     30     55     73     34
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 25(11Q23.2) MUTATED       12     22
  DEL PEAK 25(11Q23.2) WILD-TYPE      8     18
D53V1, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           12                              9
  CLUS_2                           21                             15
  CLUS_3                           89                             30
  CLUS_4                           41                             55
  CLUS_5                           36                             73
  CLUS_6                           38                             34
  CLUS_7                           12                              8
  CLUS_8                           22                             18
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q23.2) MUTATED       77     74     65     38     17
  DEL PEAK 25(11Q23.2) WILD-TYPE     24     78     49     50     41
D53V2, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           77                             24
  CLUS_2                           74                             78
  CLUS_3                           65                             49
  CLUS_4                           38                             50
  CLUS_5                           17                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q23.2) MUTATED      133    198     44    142     17
  DEL PEAK 25(11Q23.2) WILD-TYPE    266     42     55    122     25
D53V3, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                          133                            266
  CLUS_2                          198                             42
  CLUS_3                           44                             55
  CLUS_4                          142                            122
  CLUS_5                           17                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q23.2) MUTATED       66     98    124     33     45
  DEL PEAK 25(11Q23.2) WILD-TYPE     66     99     53     55     83
D53V4, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           66                             66
  CLUS_2                           98                             99
  CLUS_3                          124                             53
  CLUS_4                           33                             55
  CLUS_5                           45                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q23.2) MUTATED       80     69     60
  DEL PEAK 25(11Q23.2) WILD-TYPE     69     63     57
D53V5, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           80                             69
  CLUS_2                           69                             63
  CLUS_3                           60                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q23.2) MUTATED       20     55     42     75     17
  DEL PEAK 25(11Q23.2) WILD-TYPE     44     51     48     32     14
D53V6, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           20                             44
  CLUS_2                           55                             51
  CLUS_3                           42                             48
  CLUS_4                           75                             32
  CLUS_5                           17                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q23.2) MUTATED       87     60     83     85    184     25
  DEL PEAK 25(11Q23.2) WILD-TYPE    103     83    151     76     60     27
                                vv
clus                             CLUS_7
  DEL PEAK 25(11Q23.2) MUTATED        9
  DEL PEAK 25(11Q23.2) WILD-TYPE      7
D53V7, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           87                            103
  CLUS_2                           60                             83
  CLUS_3                           83                            151
  CLUS_4                           85                             76
  CLUS_5                          184                             60
  CLUS_6                           25                             27
  CLUS_7                            9                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q23.2) MUTATED       79    114     54    116    146     24
  DEL PEAK 25(11Q23.2) WILD-TYPE     99    129    143     64     38     34
D53V8, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           79                             99
  CLUS_2                          114                            129
  CLUS_3                           54                            143
  CLUS_4                          116                             64
  CLUS_5                          146                             38
  CLUS_6                           24                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q23.2) MUTATED      141    229    149
  DEL PEAK 25(11Q23.2) WILD-TYPE    165    193    148
D53V9, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                          141                            165
  CLUS_2                          229                            193
  CLUS_3                          149                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q23.2) MUTATED       66     99    230     61     63
  DEL PEAK 25(11Q23.2) WILD-TYPE    108     87    175     73     63
D53V10, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           66                            108
  CLUS_2                           99                             87
  CLUS_3                          230                            175
  CLUS_4                           61                             73
  CLUS_5                           63                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q23.2) MUTATED      132    117    100
  DEL PEAK 25(11Q23.2) WILD-TYPE    117    139    109
D53V11, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                          132                            117
  CLUS_2                          117                            139
  CLUS_3                          100                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q23.2) MUTATED       56     23    111     74     49     36
  DEL PEAK 25(11Q23.2) WILD-TYPE     71     44     82     61     76     31
D53V12, multiclass
        clus
vv       DEL PEAK 25(11Q23.2) MUTATED DEL PEAK 25(11Q23.2) WILD-TYPE
  CLUS_1                           56                             71
  CLUS_2                           23                             44
  CLUS_3                          111                             82
  CLUS_4                           74                             61
  CLUS_5                           49                             76
  CLUS_6                           36                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 26(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.2) MUTATED        5      8     25     24      9     13
  DEL PEAK 26(12P13.2) WILD-TYPE     16     28     94     72    100     59
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 26(12P13.2) MUTATED        4      4
  DEL PEAK 26(12P13.2) WILD-TYPE     16     36
D54V1, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                            8                             28
  CLUS_3                           25                             94
  CLUS_4                           24                             72
  CLUS_5                            9                            100
  CLUS_6                           13                             59
  CLUS_7                            4                             16
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.2) MUTATED       18     20     26     21      7
  DEL PEAK 26(12P13.2) WILD-TYPE     83    132     88     67     51
D54V2, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           18                             83
  CLUS_2                           20                            132
  CLUS_3                           26                             88
  CLUS_4                           21                             67
  CLUS_5                            7                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.2) MUTATED       45     52     14     60      6
  DEL PEAK 26(12P13.2) WILD-TYPE    354    188     85    204     36
D54V3, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           45                            354
  CLUS_2                           52                            188
  CLUS_3                           14                             85
  CLUS_4                           60                            204
  CLUS_5                            6                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.2) MUTATED       34     27     30     12     16
  DEL PEAK 26(12P13.2) WILD-TYPE     98    170    147     76    112
D54V4, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           34                             98
  CLUS_2                           27                            170
  CLUS_3                           30                            147
  CLUS_4                           12                             76
  CLUS_5                           16                            112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.2) MUTATED       33     22     18
  DEL PEAK 26(12P13.2) WILD-TYPE    116    110     99
D54V5, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           33                            116
  CLUS_2                           22                            110
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.2) MUTATED       12     15     23     16      7
  DEL PEAK 26(12P13.2) WILD-TYPE     52     91     67     91     24
D54V6, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                           15                             91
  CLUS_3                           23                             67
  CLUS_4                           16                             91
  CLUS_5                            7                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.2) MUTATED       45     21     26     35     43      4
  DEL PEAK 26(12P13.2) WILD-TYPE    145    122    208    126    201     48
                                vv
clus                             CLUS_7
  DEL PEAK 26(12P13.2) MUTATED        2
  DEL PEAK 26(12P13.2) WILD-TYPE     14
D54V7, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           45                            145
  CLUS_2                           21                            122
  CLUS_3                           26                            208
  CLUS_4                           35                            126
  CLUS_5                           43                            201
  CLUS_6                            4                             48
  CLUS_7                            2                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.2) MUTATED       41     28     24     34     32     17
  DEL PEAK 26(12P13.2) WILD-TYPE    137    215    173    146    152     41
D54V8, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           41                            137
  CLUS_2                           28                            215
  CLUS_3                           24                            173
  CLUS_4                           34                            146
  CLUS_5                           32                            152
  CLUS_6                           17                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.2) MUTATED       37     66     71
  DEL PEAK 26(12P13.2) WILD-TYPE    269    356    226
D54V9, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           37                            269
  CLUS_2                           66                            356
  CLUS_3                           71                            226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(12P13.2) MUTATED       16     26     68     30     34
  DEL PEAK 26(12P13.2) WILD-TYPE    158    160    337    104     92
D54V10, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           16                            158
  CLUS_2                           26                            160
  CLUS_3                           68                            337
  CLUS_4                           30                            104
  CLUS_5                           34                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(12P13.2) MUTATED       35     32     50
  DEL PEAK 26(12P13.2) WILD-TYPE    214    224    159
D54V11, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           35                            214
  CLUS_2                           32                            224
  CLUS_3                           50                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(12P13.2) MUTATED       28      5     31     22     12     19
  DEL PEAK 26(12P13.2) WILD-TYPE     99     62    162    113    113     48
D54V12, multiclass
        clus
vv       DEL PEAK 26(12P13.2) MUTATED DEL PEAK 26(12P13.2) WILD-TYPE
  CLUS_1                           28                             99
  CLUS_2                            5                             62
  CLUS_3                           31                            162
  CLUS_4                           22                            113
  CLUS_5                           12                            113
  CLUS_6                           19                             48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED        2      1     14     43      6     23
  DEL PEAK 27(12Q23.1) WILD-TYPE     19     35    105     53    103     49
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 27(12Q23.1) MUTATED        4      4
  DEL PEAK 27(12Q23.1) WILD-TYPE     16     36
D55V1, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            2                             19
  CLUS_2                            1                             35
  CLUS_3                           14                            105
  CLUS_4                           43                             53
  CLUS_5                            6                            103
  CLUS_6                           23                             49
  CLUS_7                            4                             16
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       12     10     35     37      3
  DEL PEAK 27(12Q23.1) WILD-TYPE     89    142     79     51     55
D55V2, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           12                             89
  CLUS_2                           10                            142
  CLUS_3                           35                             79
  CLUS_4                           37                             51
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       29     34     20    112      4
  DEL PEAK 27(12Q23.1) WILD-TYPE    370    206     79    152     38
D55V3, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           29                            370
  CLUS_2                           34                            206
  CLUS_3                           20                             79
  CLUS_4                          112                            152
  CLUS_5                            4                             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       68     15     30     12     14
  DEL PEAK 27(12Q23.1) WILD-TYPE     64    182    147     76    114
D55V4, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           68                             64
  CLUS_2                           15                            182
  CLUS_3                           30                            147
  CLUS_4                           12                             76
  CLUS_5                           14                            114
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       50     11     18
  DEL PEAK 27(12Q23.1) WILD-TYPE     99    121     99
D55V5, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           50                             99
  CLUS_2                           11                            121
  CLUS_3                           18                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED        5     11     40     16      7
  DEL PEAK 27(12Q23.1) WILD-TYPE     59     95     50     91     24
D55V6, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            5                             59
  CLUS_2                           11                             95
  CLUS_3                           40                             50
  CLUS_4                           16                             91
  CLUS_5                            7                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       84     10     22     39     34      6
  DEL PEAK 27(12Q23.1) WILD-TYPE    106    133    212    122    210     46
                                vv
clus                             CLUS_7
  DEL PEAK 27(12Q23.1) MUTATED        2
  DEL PEAK 27(12Q23.1) WILD-TYPE     14
D55V7, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           84                            106
  CLUS_2                           10                            133
  CLUS_3                           22                            212
  CLUS_4                           39                            122
  CLUS_5                           34                            210
  CLUS_6                            6                             46
  CLUS_7                            2                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       79     22     11     43     22     20
  DEL PEAK 27(12Q23.1) WILD-TYPE     99    221    186    137    162     38
D55V8, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           79                             99
  CLUS_2                           22                            221
  CLUS_3                           11                            186
  CLUS_4                           43                            137
  CLUS_5                           22                            162
  CLUS_6                           20                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       29     54    112
  DEL PEAK 27(12Q23.1) WILD-TYPE    277    368    185
D55V9, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           29                            277
  CLUS_2                           54                            368
  CLUS_3                          112                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED       16     11     69     59     40
  DEL PEAK 27(12Q23.1) WILD-TYPE    158    175    336     75     86
D55V10, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           16                            158
  CLUS_2                           11                            175
  CLUS_3                           69                            336
  CLUS_4                           59                             75
  CLUS_5                           40                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       32     30     82
  DEL PEAK 27(12Q23.1) WILD-TYPE    217    226    127
D55V11, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           32                            217
  CLUS_2                           30                            226
  CLUS_3                           82                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED       57      3     36     14     13     21
  DEL PEAK 27(12Q23.1) WILD-TYPE     70     64    157    121    112     46
D55V12, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           57                             70
  CLUS_2                            3                             64
  CLUS_3                           36                            157
  CLUS_4                           14                            121
  CLUS_5                           13                            112
  CLUS_6                           21                             46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 28(12Q24.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED        4      6     12     42      6     20
  DEL PEAK 28(12Q24.31) WILD-TYPE     17     30    107     54    103     52
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 28(12Q24.31) MUTATED        5      6
  DEL PEAK 28(12Q24.31) WILD-TYPE     15     34
D56V1, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                             4                              17
  CLUS_2                             6                              30
  CLUS_3                            12                             107
  CLUS_4                            42                              54
  CLUS_5                             6                             103
  CLUS_6                            20                              52
  CLUS_7                             5                              15
  CLUS_8                             6                              34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       10     15     35     37      4
  DEL PEAK 28(12Q24.31) WILD-TYPE     91    137     79     51     54
D56V2, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            10                              91
  CLUS_2                            15                             137
  CLUS_3                            35                              79
  CLUS_4                            37                              51
  CLUS_5                             4                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       38     31     20    111      5
  DEL PEAK 28(12Q24.31) WILD-TYPE    361    209     79    153     37
D56V3, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            38                             361
  CLUS_2                            31                             209
  CLUS_3                            20                              79
  CLUS_4                           111                             153
  CLUS_5                             5                              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       68     18     26     14     16
  DEL PEAK 28(12Q24.31) WILD-TYPE     64    179    151     74    112
D56V4, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            68                              64
  CLUS_2                            18                             179
  CLUS_3                            26                             151
  CLUS_4                            14                              74
  CLUS_5                            16                             112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       49     13     20
  DEL PEAK 28(12Q24.31) WILD-TYPE    100    119     97
D56V5, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            49                             100
  CLUS_2                            13                             119
  CLUS_3                            20                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED        7     13     36     16     10
  DEL PEAK 28(12Q24.31) WILD-TYPE     57     93     54     91     21
D56V6, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                             7                              57
  CLUS_2                            13                              93
  CLUS_3                            36                              54
  CLUS_4                            16                              91
  CLUS_5                            10                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       82     19     24     42     27      8
  DEL PEAK 28(12Q24.31) WILD-TYPE    108    124    210    119    217     44
                                 vv
clus                              CLUS_7
  DEL PEAK 28(12Q24.31) MUTATED        2
  DEL PEAK 28(12Q24.31) WILD-TYPE     14
D56V7, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            82                             108
  CLUS_2                            19                             124
  CLUS_3                            24                             210
  CLUS_4                            42                             119
  CLUS_5                            27                             217
  CLUS_6                             8                              44
  CLUS_7                             2                              14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       77     36     12     40     19     20
  DEL PEAK 28(12Q24.31) WILD-TYPE    101    207    185    140    165     38
D56V8, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            77                             101
  CLUS_2                            36                             207
  CLUS_3                            12                             185
  CLUS_4                            40                             140
  CLUS_5                            19                             165
  CLUS_6                            20                              38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       41     57    104
  DEL PEAK 28(12Q24.31) WILD-TYPE    265    365    193
D56V9, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            41                             265
  CLUS_2                            57                             365
  CLUS_3                           104                             193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.31) MUTATED       24     12     69     58     39
  DEL PEAK 28(12Q24.31) WILD-TYPE    150    174    336     76     87
D56V10, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            24                             150
  CLUS_2                            12                             174
  CLUS_3                            69                             336
  CLUS_4                            58                              76
  CLUS_5                            39                              87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.31) MUTATED       34     34     76
  DEL PEAK 28(12Q24.31) WILD-TYPE    215    222    133
D56V11, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            34                             215
  CLUS_2                            34                             222
  CLUS_3                            76                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.31) MUTATED       52      3     36     14     19     20
  DEL PEAK 28(12Q24.31) WILD-TYPE     75     64    157    121    106     47
D56V12, multiclass
        clus
vv       DEL PEAK 28(12Q24.31) MUTATED DEL PEAK 28(12Q24.31) WILD-TYPE
  CLUS_1                            52                              75
  CLUS_2                             3                              64
  CLUS_3                            36                             157
  CLUS_4                            14                             121
  CLUS_5                            19                             106
  CLUS_6                            20                              47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 29(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED        8     12     70     60     34     41
  DEL PEAK 29(13Q14.2) WILD-TYPE     13     24     49     36     75     31
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 29(13Q14.2) MUTATED        9     13
  DEL PEAK 29(13Q14.2) WILD-TYPE     11     27
D57V1, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                            8                             13
  CLUS_2                           12                             24
  CLUS_3                           70                             49
  CLUS_4                           60                             36
  CLUS_5                           34                             75
  CLUS_6                           41                             31
  CLUS_7                            9                             11
  CLUS_8                           13                             27
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED       64     47     67     56     13
  DEL PEAK 29(13Q14.2) WILD-TYPE     37    105     47     32     45
D57V2, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           64                             37
  CLUS_2                           47                            105
  CLUS_3                           67                             47
  CLUS_4                           56                             32
  CLUS_5                           13                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED       88    153     62    158     24
  DEL PEAK 29(13Q14.2) WILD-TYPE    311     87     37    106     18
D57V3, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           88                            311
  CLUS_2                          153                             87
  CLUS_3                           62                             37
  CLUS_4                          158                            106
  CLUS_5                           24                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED       84     81     97     24     44
  DEL PEAK 29(13Q14.2) WILD-TYPE     48    116     80     64     84
D57V4, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           84                             48
  CLUS_2                           81                            116
  CLUS_3                           97                             80
  CLUS_4                           24                             64
  CLUS_5                           44                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED       79     57     56
  DEL PEAK 29(13Q14.2) WILD-TYPE     70     75     61
D57V5, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           79                             70
  CLUS_2                           57                             75
  CLUS_3                           56                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED       19     44     58     61     10
  DEL PEAK 29(13Q14.2) WILD-TYPE     45     62     32     46     21
D57V6, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           19                             45
  CLUS_2                           44                             62
  CLUS_3                           58                             32
  CLUS_4                           61                             46
  CLUS_5                           10                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED      120     41     86     81    130     16
  DEL PEAK 29(13Q14.2) WILD-TYPE     70    102    148     80    114     36
                                vv
clus                             CLUS_7
  DEL PEAK 29(13Q14.2) MUTATED        9
  DEL PEAK 29(13Q14.2) WILD-TYPE      7
D57V7, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          120                             70
  CLUS_2                           41                            102
  CLUS_3                           86                            148
  CLUS_4                           81                             80
  CLUS_5                          130                            114
  CLUS_6                           16                             36
  CLUS_7                            9                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED      112     77     60    104    104     26
  DEL PEAK 29(13Q14.2) WILD-TYPE     66    166    137     76     80     32
D57V8, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          112                             66
  CLUS_2                           77                            166
  CLUS_3                           60                            137
  CLUS_4                          104                             76
  CLUS_5                          104                             80
  CLUS_6                           26                             32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED       97    206    171
  DEL PEAK 29(13Q14.2) WILD-TYPE    209    216    126
D57V9, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           97                            209
  CLUS_2                          206                            216
  CLUS_3                          171                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q14.2) MUTATED       45     82    199     89     59
  DEL PEAK 29(13Q14.2) WILD-TYPE    129    104    206     45     67
D57V10, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           45                            129
  CLUS_2                           82                            104
  CLUS_3                          199                            206
  CLUS_4                           89                             45
  CLUS_5                           59                             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q14.2) MUTATED      111     83    122
  DEL PEAK 29(13Q14.2) WILD-TYPE    138    173     87
D57V11, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                          111                            138
  CLUS_2                           83                            173
  CLUS_3                          122                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q14.2) MUTATED       78     17     98     59     31     33
  DEL PEAK 29(13Q14.2) WILD-TYPE     49     50     95     76     94     34
D57V12, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           78                             49
  CLUS_2                           17                             50
  CLUS_3                           98                             95
  CLUS_4                           59                             76
  CLUS_5                           31                             94
  CLUS_6                           33                             34
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 30(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED        4      7     47     63     10     22
  DEL PEAK 30(14Q24.1) WILD-TYPE     17     29     72     33     99     50
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 30(14Q24.1) MUTATED       10      8
  DEL PEAK 30(14Q24.1) WILD-TYPE     10     32
D58V1, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                            4                             17
  CLUS_2                            7                             29
  CLUS_3                           47                             72
  CLUS_4                           63                             33
  CLUS_5                           10                             99
  CLUS_6                           22                             50
  CLUS_7                           10                             10
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED       37     30     41     59      4
  DEL PEAK 30(14Q24.1) WILD-TYPE     64    122     73     29     54
D58V2, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           37                             64
  CLUS_2                           30                            122
  CLUS_3                           41                             73
  CLUS_4                           59                             29
  CLUS_5                            4                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED       48     88     22    169     14
  DEL PEAK 30(14Q24.1) WILD-TYPE    351    152     77     95     28
D58V3, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           48                            351
  CLUS_2                           88                            152
  CLUS_3                           22                             77
  CLUS_4                          169                             95
  CLUS_5                           14                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED       88     38     58     17     31
  DEL PEAK 30(14Q24.1) WILD-TYPE     44    159    119     71     97
D58V4, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           88                             44
  CLUS_2                           38                            159
  CLUS_3                           58                            119
  CLUS_4                           17                             71
  CLUS_5                           31                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED       77     27     33
  DEL PEAK 30(14Q24.1) WILD-TYPE     72    105     84
D58V5, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           77                             72
  CLUS_2                           27                            105
  CLUS_3                           33                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED        6     27     58     38      8
  DEL PEAK 30(14Q24.1) WILD-TYPE     58     79     32     69     23
D58V6, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                           27                             79
  CLUS_3                           58                             32
  CLUS_4                           38                             69
  CLUS_5                            8                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED      126     23     28     52     97      8
  DEL PEAK 30(14Q24.1) WILD-TYPE     64    120    206    109    147     44
                                vv
clus                             CLUS_7
  DEL PEAK 30(14Q24.1) MUTATED        6
  DEL PEAK 30(14Q24.1) WILD-TYPE     10
D58V7, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          126                             64
  CLUS_2                           23                            120
  CLUS_3                           28                            206
  CLUS_4                           52                            109
  CLUS_5                           97                            147
  CLUS_6                            8                             44
  CLUS_7                            6                             10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED      121     44     22     75     63     15
  DEL PEAK 30(14Q24.1) WILD-TYPE     57    199    175    105    121     43
D58V8, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                          121                             57
  CLUS_2                           44                            199
  CLUS_3                           22                            175
  CLUS_4                           75                            105
  CLUS_5                           63                            121
  CLUS_6                           15                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED       60    105    166
  DEL PEAK 30(14Q24.1) WILD-TYPE    246    317    131
D58V9, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           60                            246
  CLUS_2                          105                            317
  CLUS_3                          166                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q24.1) MUTATED       20     41    120     96     54
  DEL PEAK 30(14Q24.1) WILD-TYPE    154    145    285     38     72
D58V10, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           20                            154
  CLUS_2                           41                            145
  CLUS_3                          120                            285
  CLUS_4                           96                             38
  CLUS_5                           54                             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q24.1) MUTATED       69     47    122
  DEL PEAK 30(14Q24.1) WILD-TYPE    180    209     87
D58V11, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           69                            180
  CLUS_2                           47                            209
  CLUS_3                          122                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q24.1) MUTATED       85     12     64     38     14     25
  DEL PEAK 30(14Q24.1) WILD-TYPE     42     55    129     97    111     42
D58V12, multiclass
        clus
vv       DEL PEAK 30(14Q24.1) MUTATED DEL PEAK 30(14Q24.1) WILD-TYPE
  CLUS_1                           85                             42
  CLUS_2                           12                             55
  CLUS_3                           64                            129
  CLUS_4                           38                             97
  CLUS_5                           14                            111
  CLUS_6                           25                             42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 31(15Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED        5     11     41     58     24     34
  DEL PEAK 31(15Q13.1) WILD-TYPE     16     25     78     38     85     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 31(15Q13.1) MUTATED       10      8
  DEL PEAK 31(15Q13.1) WILD-TYPE     10     32
D59V1, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                            5                             16
  CLUS_2                           11                             25
  CLUS_3                           41                             78
  CLUS_4                           58                             38
  CLUS_5                           24                             85
  CLUS_6                           34                             38
  CLUS_7                           10                             10
  CLUS_8                            8                             32
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q13.1) MUTATED       36     35     54     54     12
  DEL PEAK 31(15Q13.1) WILD-TYPE     65    117     60     34     46
D59V2, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           36                             65
  CLUS_2                           35                            117
  CLUS_3                           54                             60
  CLUS_4                           54                             34
  CLUS_5                           12                             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q13.1) MUTATED       44     85     47    175     13
  DEL PEAK 31(15Q13.1) WILD-TYPE    355    155     52     89     29
D59V3, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           44                            355
  CLUS_2                           85                            155
  CLUS_3                           47                             52
  CLUS_4                          175                             89
  CLUS_5                           13                             29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q13.1) MUTATED       86     45     65     20     29
  DEL PEAK 31(15Q13.1) WILD-TYPE     46    152    112     68     99
D59V4, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           86                             46
  CLUS_2                           45                            152
  CLUS_3                           65                            112
  CLUS_4                           20                             68
  CLUS_5                           29                             99
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q13.1) MUTATED       80     39     38
  DEL PEAK 31(15Q13.1) WILD-TYPE     69     93     79
D59V5, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           80                             69
  CLUS_2                           39                             93
  CLUS_3                           38                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q13.1) MUTATED       18     29     54     43     13
  DEL PEAK 31(15Q13.1) WILD-TYPE     46     77     36     64     18
D59V6, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           29                             77
  CLUS_3                           54                             36
  CLUS_4                           43                             64
  CLUS_5                           13                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED      122     24     53     69     80      7
  DEL PEAK 31(15Q13.1) WILD-TYPE     68    119    181     92    164     45
                                vv
clus                             CLUS_7
  DEL PEAK 31(15Q13.1) MUTATED        7
  DEL PEAK 31(15Q13.1) WILD-TYPE      9
D59V7, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                          122                             68
  CLUS_2                           24                            119
  CLUS_3                           53                            181
  CLUS_4                           69                             92
  CLUS_5                           80                            164
  CLUS_6                            7                             45
  CLUS_7                            7                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED      118     47     32     83     62     20
  DEL PEAK 31(15Q13.1) WILD-TYPE     60    196    165     97    122     38
D59V8, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                          118                             60
  CLUS_2                           47                            196
  CLUS_3                           32                            165
  CLUS_4                           83                             97
  CLUS_5                           62                            122
  CLUS_6                           20                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q13.1) MUTATED       53    132    170
  DEL PEAK 31(15Q13.1) WILD-TYPE    253    290    127
D59V9, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           53                            253
  CLUS_2                          132                            290
  CLUS_3                          170                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q13.1) MUTATED       24     35    145     97     54
  DEL PEAK 31(15Q13.1) WILD-TYPE    150    151    260     37     72
D59V10, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           24                            150
  CLUS_2                           35                            151
  CLUS_3                          145                            260
  CLUS_4                           97                             37
  CLUS_5                           54                             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q13.1) MUTATED       82     46    117
  DEL PEAK 31(15Q13.1) WILD-TYPE    167    210     92
D59V11, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           82                            167
  CLUS_2                           46                            210
  CLUS_3                          117                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q13.1) MUTATED       85     12     78     23     19     28
  DEL PEAK 31(15Q13.1) WILD-TYPE     42     55    115    112    106     39
D59V12, multiclass
        clus
vv       DEL PEAK 31(15Q13.1) MUTATED DEL PEAK 31(15Q13.1) WILD-TYPE
  CLUS_1                           85                             42
  CLUS_2                           12                             55
  CLUS_3                           78                            115
  CLUS_4                           23                            112
  CLUS_5                           19                            106
  CLUS_6                           28                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 32(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED       16     25     81     27     94     45
  DEL PEAK 32(16Q24.3) WILD-TYPE      5     11     38     69     15     27
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 32(16Q24.3) MUTATED       13     35
  DEL PEAK 32(16Q24.3) WILD-TYPE      7      5
D60V1, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           16                              5
  CLUS_2                           25                             11
  CLUS_3                           81                             38
  CLUS_4                           27                             69
  CLUS_5                           94                             15
  CLUS_6                           45                             27
  CLUS_7                           13                              7
  CLUS_8                           35                              5
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(16Q24.3) MUTATED       74    124     71     22     45
  DEL PEAK 32(16Q24.3) WILD-TYPE     27     28     43     66     13
D60V2, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           74                             27
  CLUS_2                          124                             28
  CLUS_3                           71                             43
  CLUS_4                           22                             66
  CLUS_5                           45                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(16Q24.3) MUTATED      285    154     81    119     33
  DEL PEAK 32(16Q24.3) WILD-TYPE    114     86     18    145      9
D60V3, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          285                            114
  CLUS_2                          154                             86
  CLUS_3                           81                             18
  CLUS_4                          119                            145
  CLUS_5                           33                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(16Q24.3) MUTATED       53    152    118     61     72
  DEL PEAK 32(16Q24.3) WILD-TYPE     79     45     59     27     56
D60V4, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           53                             79
  CLUS_2                          152                             45
  CLUS_3                          118                             59
  CLUS_4                           61                             27
  CLUS_5                           72                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(16Q24.3) MUTATED       64    103     84
  DEL PEAK 32(16Q24.3) WILD-TYPE     85     29     33
D60V5, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           64                             85
  CLUS_2                          103                             29
  CLUS_3                           84                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(16Q24.3) MUTATED       54     80     28     74     15
  DEL PEAK 32(16Q24.3) WILD-TYPE     10     26     62     33     16
D60V6, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           54                             10
  CLUS_2                           80                             26
  CLUS_3                           28                             62
  CLUS_4                           74                             33
  CLUS_5                           15                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED       62    111    198     91    153     42
  DEL PEAK 32(16Q24.3) WILD-TYPE    128     32     36     70     91     10
                                vv
clus                             CLUS_7
  DEL PEAK 32(16Q24.3) MUTATED       12
  DEL PEAK 32(16Q24.3) WILD-TYPE      4
D60V7, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           62                            128
  CLUS_2                          111                             32
  CLUS_3                          198                             36
  CLUS_4                           91                             70
  CLUS_5                          153                             91
  CLUS_6                           42                             10
  CLUS_7                           12                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED       56    191    154    115    126     27
  DEL PEAK 32(16Q24.3) WILD-TYPE    122     52     43     65     58     31
D60V8, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           56                            122
  CLUS_2                          191                             52
  CLUS_3                          154                             43
  CLUS_4                          115                             65
  CLUS_5                          126                             58
  CLUS_6                           27                             31
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(16Q24.3) MUTATED      229    306    125
  DEL PEAK 32(16Q24.3) WILD-TYPE     77    116    172
D60V9, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          229                             77
  CLUS_2                          306                            116
  CLUS_3                          125                            172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(16Q24.3) MUTATED      136    136    281     47     60
  DEL PEAK 32(16Q24.3) WILD-TYPE     38     50    124     87     66
D60V10, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          136                             38
  CLUS_2                          136                             50
  CLUS_3                          281                            124
  CLUS_4                           47                             87
  CLUS_5                           60                             66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(16Q24.3) MUTATED      171    190     92
  DEL PEAK 32(16Q24.3) WILD-TYPE     78     66    117
D60V11, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                          171                             78
  CLUS_2                          190                             66
  CLUS_3                           92                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(16Q24.3) MUTATED       45     49    138     79    108     34
  DEL PEAK 32(16Q24.3) WILD-TYPE     82     18     55     56     17     33
D60V12, multiclass
        clus
vv       DEL PEAK 32(16Q24.3) MUTATED DEL PEAK 32(16Q24.3) WILD-TYPE
  CLUS_1                           45                             82
  CLUS_2                           49                             18
  CLUS_3                          138                             55
  CLUS_4                           79                             56
  CLUS_5                          108                             17
  CLUS_6                           34                             33
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 33(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(17P12) MUTATED       14     27     78     65     33     62     15
  DEL PEAK 33(17P12) WILD-TYPE      7      9     41     31     76     10      5
                              vv
clus                           CLUS_8
  DEL PEAK 33(17P12) MUTATED       24
  DEL PEAK 33(17P12) WILD-TYPE     16
D61V1, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         14                            7
  CLUS_2                         27                            9
  CLUS_3                         78                           41
  CLUS_4                         65                           31
  CLUS_5                         33                           76
  CLUS_6                         62                           10
  CLUS_7                         15                            5
  CLUS_8                         24                           16
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17P12) MUTATED       69     86     93     58     12
  DEL PEAK 33(17P12) WILD-TYPE     32     66     21     30     46
D61V2, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         69                           32
  CLUS_2                         86                           66
  CLUS_3                         93                           21
  CLUS_4                         58                           30
  CLUS_5                         12                           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17P12) MUTATED      160    189     50    206     24
  DEL PEAK 33(17P12) WILD-TYPE    239     51     49     58     18
D61V3, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        160                          239
  CLUS_2                        189                           51
  CLUS_3                         50                           49
  CLUS_4                        206                           58
  CLUS_5                         24                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17P12) MUTATED       87     98    133     43     65
  DEL PEAK 33(17P12) WILD-TYPE     45     99     44     45     63
D61V4, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         87                           45
  CLUS_2                         98                           99
  CLUS_3                        133                           44
  CLUS_4                         43                           45
  CLUS_5                         65                           63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17P12) MUTATED      116     66     66
  DEL PEAK 33(17P12) WILD-TYPE     33     66     51
D61V5, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        116                           33
  CLUS_2                         66                           66
  CLUS_3                         66                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17P12) MUTATED       23     57     65     77     26
  DEL PEAK 33(17P12) WILD-TYPE     41     49     25     30      5
D61V6, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         23                           41
  CLUS_2                         57                           49
  CLUS_3                         65                           25
  CLUS_4                         77                           30
  CLUS_5                         26                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 33(17P12) MUTATED      120     77     83    134    173     27     12
  DEL PEAK 33(17P12) WILD-TYPE     70     66    151     27     71     25      4
D61V7, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        120                           70
  CLUS_2                         77                           66
  CLUS_3                         83                          151
  CLUS_4                        134                           27
  CLUS_5                        173                           71
  CLUS_6                         27                           25
  CLUS_7                         12                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17P12) MUTATED      113    132     56    148    131     46
  DEL PEAK 33(17P12) WILD-TYPE     65    111    141     32     53     12
D61V8, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        113                           65
  CLUS_2                        132                          111
  CLUS_3                         56                          141
  CLUS_4                        148                           32
  CLUS_5                        131                           53
  CLUS_6                         46                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17P12) MUTATED      154    252    212
  DEL PEAK 33(17P12) WILD-TYPE    152    170     85
D61V9, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        154                          152
  CLUS_2                        252                          170
  CLUS_3                        212                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(17P12) MUTATED       72     98    269     91     88
  DEL PEAK 33(17P12) WILD-TYPE    102     88    136     43     38
D61V10, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         72                          102
  CLUS_2                         98                           88
  CLUS_3                        269                          136
  CLUS_4                         91                           43
  CLUS_5                         88                           38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(17P12) MUTATED      146    133    145
  DEL PEAK 33(17P12) WILD-TYPE    103    123     64
D61V11, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                        146                          103
  CLUS_2                        133                          123
  CLUS_3                        145                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(17P12) MUTATED       78     32    133     74     54     53
  DEL PEAK 33(17P12) WILD-TYPE     49     35     60     61     71     14
D61V12, multiclass
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  CLUS_1                         78                           49
  CLUS_2                         32                           35
  CLUS_3                        133                           60
  CLUS_4                         74                           61
  CLUS_5                         54                           71
  CLUS_6                         53                           14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 34(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED        7     17     28     53     13     50
  DEL PEAK 34(17Q21.31) WILD-TYPE     14     19     91     43     96     22
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 34(17Q21.31) MUTATED        9     15
  DEL PEAK 34(17Q21.31) WILD-TYPE     11     25
D62V1, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                             7                              14
  CLUS_2                            17                              19
  CLUS_3                            28                              91
  CLUS_4                            53                              43
  CLUS_5                            13                              96
  CLUS_6                            50                              22
  CLUS_7                             9                              11
  CLUS_8                            15                              25
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q21.31) MUTATED       24     49     70     46      3
  DEL PEAK 34(17Q21.31) WILD-TYPE     77    103     44     42     55
D62V2, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            24                              77
  CLUS_2                            49                             103
  CLUS_3                            70                              44
  CLUS_4                            46                              42
  CLUS_5                             3                              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q21.31) MUTATED       81     79     24    170      8
  DEL PEAK 34(17Q21.31) WILD-TYPE    318    161     75     94     34
D62V3, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            81                             318
  CLUS_2                            79                             161
  CLUS_3                            24                              75
  CLUS_4                           170                              94
  CLUS_5                             8                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q21.31) MUTATED       81     30     63     18     40
  DEL PEAK 34(17Q21.31) WILD-TYPE     51    167    114     70     88
D62V4, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            81                              51
  CLUS_2                            30                             167
  CLUS_3                            63                             114
  CLUS_4                            18                              70
  CLUS_5                            40                              88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17Q21.31) MUTATED       90     24     44
  DEL PEAK 34(17Q21.31) WILD-TYPE     59    108     73
D62V5, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            90                              59
  CLUS_2                            24                             108
  CLUS_3                            44                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q21.31) MUTATED       10     34     52     36     26
  DEL PEAK 34(17Q21.31) WILD-TYPE     54     72     38     71      5
D62V6, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            10                              54
  CLUS_2                            34                              72
  CLUS_3                            52                              38
  CLUS_4                            36                              71
  CLUS_5                            26                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED      101     33     34    114     59     14
  DEL PEAK 34(17Q21.31) WILD-TYPE     89    110    200     47    185     38
                                 vv
clus                              CLUS_7
  DEL PEAK 34(17Q21.31) MUTATED        6
  DEL PEAK 34(17Q21.31) WILD-TYPE     10
D62V7, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                           101                              89
  CLUS_2                            33                             110
  CLUS_3                            34                             200
  CLUS_4                           114                              47
  CLUS_5                            59                             185
  CLUS_6                            14                              38
  CLUS_7                             6                              10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED       96     71     16     98     40     40
  DEL PEAK 34(17Q21.31) WILD-TYPE     82    172    181     82    144     18
D62V8, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            96                              82
  CLUS_2                            71                             172
  CLUS_3                            16                             181
  CLUS_4                            98                              82
  CLUS_5                            40                             144
  CLUS_6                            40                              18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17Q21.31) MUTATED       69    124    161
  DEL PEAK 34(17Q21.31) WILD-TYPE    237    298    136
D62V9, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            69                             237
  CLUS_2                           124                             298
  CLUS_3                           161                             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(17Q21.31) MUTATED       34     31    154     80     55
  DEL PEAK 34(17Q21.31) WILD-TYPE    140    155    251     54     71
D62V10, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            34                             140
  CLUS_2                            31                             155
  CLUS_3                           154                             251
  CLUS_4                            80                              54
  CLUS_5                            55                              71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(17Q21.31) MUTATED       77     58    115
  DEL PEAK 34(17Q21.31) WILD-TYPE    172    198     94
D62V11, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            77                             172
  CLUS_2                            58                             198
  CLUS_3                           115                              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(17Q21.31) MUTATED       68     13     80     31     21     37
  DEL PEAK 34(17Q21.31) WILD-TYPE     59     54    113    104    104     30
D62V12, multiclass
        clus
vv       DEL PEAK 34(17Q21.31) MUTATED DEL PEAK 34(17Q21.31) WILD-TYPE
  CLUS_1                            68                              59
  CLUS_2                            13                              54
  CLUS_3                            80                             113
  CLUS_4                            31                             104
  CLUS_5                            21                             104
  CLUS_6                            37                              30
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 35(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(18Q23) MUTATED        6     13     38     38     18     37      6
  DEL PEAK 35(18Q23) WILD-TYPE     15     23     81     58     91     35     14
                              vv
clus                           CLUS_8
  DEL PEAK 35(18Q23) MUTATED        9
  DEL PEAK 35(18Q23) WILD-TYPE     31
D63V1, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                          6                           15
  CLUS_2                         13                           23
  CLUS_3                         38                           81
  CLUS_4                         38                           58
  CLUS_5                         18                           91
  CLUS_6                         37                           35
  CLUS_7                          6                           14
  CLUS_8                          9                           31
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18Q23) MUTATED       31     35     54     35     10
  DEL PEAK 35(18Q23) WILD-TYPE     70    117     60     53     48
D63V2, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         31                           70
  CLUS_2                         35                          117
  CLUS_3                         54                           60
  CLUS_4                         35                           53
  CLUS_5                         10                           48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18Q23) MUTATED       66    103     36    127     11
  DEL PEAK 35(18Q23) WILD-TYPE    333    137     63    137     31
D63V3, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         66                          333
  CLUS_2                        103                          137
  CLUS_3                         36                           63
  CLUS_4                        127                          137
  CLUS_5                         11                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18Q23) MUTATED       59     47     88     17     30
  DEL PEAK 35(18Q23) WILD-TYPE     73    150     89     71     98
D63V4, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         59                           73
  CLUS_2                         47                          150
  CLUS_3                         88                           89
  CLUS_4                         17                           71
  CLUS_5                         30                           98
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(18Q23) MUTATED       63     36     29
  DEL PEAK 35(18Q23) WILD-TYPE     86     96     88
D63V5, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         63                           86
  CLUS_2                         36                           96
  CLUS_3                         29                           88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18Q23) MUTATED       13     29     32     45      9
  DEL PEAK 35(18Q23) WILD-TYPE     51     77     58     62     22
D63V6, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         13                           51
  CLUS_2                         29                           77
  CLUS_3                         32                           58
  CLUS_4                         45                           62
  CLUS_5                          9                           22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 35(18Q23) MUTATED       79     28     45     81     87     16      5
  DEL PEAK 35(18Q23) WILD-TYPE    111    115    189     80    157     36     11
D63V7, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         79                          111
  CLUS_2                         28                          115
  CLUS_3                         45                          189
  CLUS_4                         81                           80
  CLUS_5                         87                          157
  CLUS_6                         16                           36
  CLUS_7                          5                           11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(18Q23) MUTATED       75     63     28    100     49     26
  DEL PEAK 35(18Q23) WILD-TYPE    103    180    169     80    135     32
D63V8, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         75                          103
  CLUS_2                         63                          180
  CLUS_3                         28                          169
  CLUS_4                        100                           80
  CLUS_5                         49                          135
  CLUS_6                         26                           32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(18Q23) MUTATED       74    137    128
  DEL PEAK 35(18Q23) WILD-TYPE    232    285    169
D63V9, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         74                          232
  CLUS_2                        137                          285
  CLUS_3                        128                          169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(18Q23) MUTATED       33     48    141     55     62
  DEL PEAK 35(18Q23) WILD-TYPE    141    138    264     79     64
D63V10, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         33                          141
  CLUS_2                         48                          138
  CLUS_3                        141                          264
  CLUS_4                         55                           79
  CLUS_5                         62                           64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(18Q23) MUTATED       76     60     93
  DEL PEAK 35(18Q23) WILD-TYPE    173    196    116
D63V11, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         76                          173
  CLUS_2                         60                          196
  CLUS_3                         93                          116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(18Q23) MUTATED       56     14     72     27     28     32
  DEL PEAK 35(18Q23) WILD-TYPE     71     53    121    108     97     35
D63V12, multiclass
        clus
vv       DEL PEAK 35(18Q23) MUTATED DEL PEAK 35(18Q23) WILD-TYPE
  CLUS_1                         56                           71
  CLUS_2                         14                           53
  CLUS_3                         72                          121
  CLUS_4                         27                          108
  CLUS_5                         28                           97
  CLUS_6                         32                           35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 36(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED        7     10     49     56     13     34
  DEL PEAK 36(19P13.3) WILD-TYPE     14     26     70     40     96     38
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 36(19P13.3) MUTATED        6      6
  DEL PEAK 36(19P13.3) WILD-TYPE     14     34
D64V1, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                            7                             14
  CLUS_2                           10                             26
  CLUS_3                           49                             70
  CLUS_4                           56                             40
  CLUS_5                           13                             96
  CLUS_6                           34                             38
  CLUS_7                            6                             14
  CLUS_8                            6                             34
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19P13.3) MUTATED       45     28     53     52      3
  DEL PEAK 36(19P13.3) WILD-TYPE     56    124     61     36     55
D64V2, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           45                             56
  CLUS_2                           28                            124
  CLUS_3                           53                             61
  CLUS_4                           52                             36
  CLUS_5                            3                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19P13.3) MUTATED       36    124     13    162     15
  DEL PEAK 36(19P13.3) WILD-TYPE    363    116     86    102     27
D64V3, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           36                            363
  CLUS_2                          124                            116
  CLUS_3                           13                             86
  CLUS_4                          162                            102
  CLUS_5                           15                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19P13.3) MUTATED       73     35     67     12     34
  DEL PEAK 36(19P13.3) WILD-TYPE     59    162    110     76     94
D64V4, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           73                             59
  CLUS_2                           35                            162
  CLUS_3                           67                            110
  CLUS_4                           12                             76
  CLUS_5                           34                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19P13.3) MUTATED       79     37     32
  DEL PEAK 36(19P13.3) WILD-TYPE     70     95     85
D64V5, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           79                             70
  CLUS_2                           37                             95
  CLUS_3                           32                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19P13.3) MUTATED        6     31     49     45     17
  DEL PEAK 36(19P13.3) WILD-TYPE     58     75     41     62     14
D64V6, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                           31                             75
  CLUS_3                           49                             41
  CLUS_4                           45                             62
  CLUS_5                           17                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED      109     21     26     70    104     10
  DEL PEAK 36(19P13.3) WILD-TYPE     81    122    208     91    140     42
                                vv
clus                             CLUS_7
  DEL PEAK 36(19P13.3) MUTATED        9
  DEL PEAK 36(19P13.3) WILD-TYPE      7
D64V7, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                          109                             81
  CLUS_2                           21                            122
  CLUS_3                           26                            208
  CLUS_4                           70                             91
  CLUS_5                          104                            140
  CLUS_6                           10                             42
  CLUS_7                            9                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED      105     39     18     98     69     20
  DEL PEAK 36(19P13.3) WILD-TYPE     73    204    179     82    115     38
D64V8, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                          105                             73
  CLUS_2                           39                            204
  CLUS_3                           18                            179
  CLUS_4                           98                             82
  CLUS_5                           69                            115
  CLUS_6                           20                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19P13.3) MUTATED       47    130    163
  DEL PEAK 36(19P13.3) WILD-TYPE    259    292    134
D64V9, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           47                            259
  CLUS_2                          130                            292
  CLUS_3                          163                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(19P13.3) MUTATED       13     43    139     83     62
  DEL PEAK 36(19P13.3) WILD-TYPE    161    143    266     51     64
D64V10, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           13                            161
  CLUS_2                           43                            143
  CLUS_3                          139                            266
  CLUS_4                           83                             51
  CLUS_5                           62                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(19P13.3) MUTATED       71     49    117
  DEL PEAK 36(19P13.3) WILD-TYPE    178    207     92
D64V11, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           71                            178
  CLUS_2                           49                            207
  CLUS_3                          117                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(19P13.3) MUTATED       74      8     67     44     12     32
  DEL PEAK 36(19P13.3) WILD-TYPE     53     59    126     91    113     35
D64V12, multiclass
        clus
vv       DEL PEAK 36(19P13.3) MUTATED DEL PEAK 36(19P13.3) WILD-TYPE
  CLUS_1                           74                             53
  CLUS_2                            8                             59
  CLUS_3                           67                            126
  CLUS_4                           44                             91
  CLUS_5                           12                            113
  CLUS_6                           32                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 37(19Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED        4      7     23     26      7     28
  DEL PEAK 37(19Q13.32) WILD-TYPE     17     29     96     70    102     44
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 37(19Q13.32) MUTATED        1      3
  DEL PEAK 37(19Q13.32) WILD-TYPE     19     37
D65V1, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                             4                              17
  CLUS_2                             7                              29
  CLUS_3                            23                              96
  CLUS_4                            26                              70
  CLUS_5                             7                             102
  CLUS_6                            28                              44
  CLUS_7                             1                              19
  CLUS_8                             3                              37
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.32) MUTATED       26     11     36     24      2
  DEL PEAK 37(19Q13.32) WILD-TYPE     75    141     78     64     56
D65V2, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            26                              75
  CLUS_2                            11                             141
  CLUS_3                            36                              78
  CLUS_4                            24                              64
  CLUS_5                             2                              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.32) MUTATED       21     83      7     89      6
  DEL PEAK 37(19Q13.32) WILD-TYPE    378    157     92    175     36
D65V3, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            21                             378
  CLUS_2                            83                             157
  CLUS_3                             7                              92
  CLUS_4                            89                             175
  CLUS_5                             6                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.32) MUTATED       47     19     47      8     18
  DEL PEAK 37(19Q13.32) WILD-TYPE     85    178    130     80    110
D65V4, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            47                              85
  CLUS_2                            19                             178
  CLUS_3                            47                             130
  CLUS_4                             8                              80
  CLUS_5                            18                             110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.32) MUTATED       45     20     15
  DEL PEAK 37(19Q13.32) WILD-TYPE    104    112    102
D65V5, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            45                             104
  CLUS_2                            20                             112
  CLUS_3                            15                             102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.32) MUTATED        4     12     30     23     11
  DEL PEAK 37(19Q13.32) WILD-TYPE     60     94     60     84     20
D65V6, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                             4                              60
  CLUS_2                            12                              94
  CLUS_3                            30                              60
  CLUS_4                            23                              84
  CLUS_5                            11                              20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED       57      8     17     58     61      4
  DEL PEAK 37(19Q13.32) WILD-TYPE    133    135    217    103    183     48
                                 vv
clus                              CLUS_7
  DEL PEAK 37(19Q13.32) MUTATED        1
  DEL PEAK 37(19Q13.32) WILD-TYPE     15
D65V7, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            57                             133
  CLUS_2                             8                             135
  CLUS_3                            17                             217
  CLUS_4                            58                             103
  CLUS_5                            61                             183
  CLUS_6                             4                              48
  CLUS_7                             1                              15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED       57     17      9     56     48     19
  DEL PEAK 37(19Q13.32) WILD-TYPE    121    226    188    124    136     39
D65V8, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            57                             121
  CLUS_2                            17                             226
  CLUS_3                             9                             188
  CLUS_4                            56                             124
  CLUS_5                            48                             136
  CLUS_6                            19                              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.32) MUTATED       20     82     97
  DEL PEAK 37(19Q13.32) WILD-TYPE    286    340    200
D65V9, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            20                             286
  CLUS_2                            82                             340
  CLUS_3                            97                             200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(19Q13.32) MUTATED        7     25     89     46     32
  DEL PEAK 37(19Q13.32) WILD-TYPE    167    161    316     88     94
D65V10, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                             7                             167
  CLUS_2                            25                             161
  CLUS_3                            89                             316
  CLUS_4                            46                              88
  CLUS_5                            32                              94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(19Q13.32) MUTATED       49     20     73
  DEL PEAK 37(19Q13.32) WILD-TYPE    200    236    136
D65V11, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            49                             200
  CLUS_2                            20                             236
  CLUS_3                            73                             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(19Q13.32) MUTATED       43      4     45     22      5     23
  DEL PEAK 37(19Q13.32) WILD-TYPE     84     63    148    113    120     44
D65V12, multiclass
        clus
vv       DEL PEAK 37(19Q13.32) MUTATED DEL PEAK 37(19Q13.32) WILD-TYPE
  CLUS_1                            43                              84
  CLUS_2                             4                              63
  CLUS_3                            45                             148
  CLUS_4                            22                             113
  CLUS_5                             5                             120
  CLUS_6                            23                              44
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 38(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 38(20P13) MUTATED        1      3     28     25      3     16      3
  DEL PEAK 38(20P13) WILD-TYPE     20     33     91     71    106     56     17
                              vv
clus                           CLUS_8
  DEL PEAK 38(20P13) MUTATED        1
  DEL PEAK 38(20P13) WILD-TYPE     39
D66V1, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                          1                           20
  CLUS_2                          3                           33
  CLUS_3                         28                           91
  CLUS_4                         25                           71
  CLUS_5                          3                          106
  CLUS_6                         16                           56
  CLUS_7                          3                           17
  CLUS_8                          1                           39
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(20P13) MUTATED       23      9     25     23      0
  DEL PEAK 38(20P13) WILD-TYPE     78    143     89     65     58
D66V2, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         23                           78
  CLUS_2                          9                          143
  CLUS_3                         25                           89
  CLUS_4                         23                           65
  CLUS_5                          0                           58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(20P13) MUTATED       18     44      6     80      8
  DEL PEAK 38(20P13) WILD-TYPE    381    196     93    184     34
D66V3, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         18                          381
  CLUS_2                         44                          196
  CLUS_3                          6                           93
  CLUS_4                         80                          184
  CLUS_5                          8                           34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(20P13) MUTATED       44     11     29      8     10
  DEL PEAK 38(20P13) WILD-TYPE     88    186    148     80    118
D66V4, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         44                           88
  CLUS_2                         11                          186
  CLUS_3                         29                          148
  CLUS_4                          8                           80
  CLUS_5                         10                          118
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(20P13) MUTATED       37     10     17
  DEL PEAK 38(20P13) WILD-TYPE    112    122    100
D66V5, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         37                          112
  CLUS_2                         10                          122
  CLUS_3                         17                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(20P13) MUTATED        5      8     24     20      7
  DEL PEAK 38(20P13) WILD-TYPE     59     98     66     87     24
D66V6, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                          5                           59
  CLUS_2                          8                           98
  CLUS_3                         24                           66
  CLUS_4                         20                           87
  CLUS_5                          7                           24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 38(20P13) MUTATED       56      7      9     27     53      2      1
  DEL PEAK 38(20P13) WILD-TYPE    134    136    225    134    191     50     15
D66V7, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         56                          134
  CLUS_2                          7                          136
  CLUS_3                          9                          225
  CLUS_4                         27                          134
  CLUS_5                         53                          191
  CLUS_6                          2                           50
  CLUS_7                          1                           15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(20P13) MUTATED       55     13      6     35     34     12
  DEL PEAK 38(20P13) WILD-TYPE    123    230    191    145    150     46
D66V8, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         55                          123
  CLUS_2                         13                          230
  CLUS_3                          6                          191
  CLUS_4                         35                          145
  CLUS_5                         34                          150
  CLUS_6                         12                           46
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(20P13) MUTATED       16     48     83
  DEL PEAK 38(20P13) WILD-TYPE    290    374    214
D66V9, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         16                          290
  CLUS_2                         48                          374
  CLUS_3                         83                          214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(20P13) MUTATED        8     17     48     43     31
  DEL PEAK 38(20P13) WILD-TYPE    166    169    357     91     95
D66V10, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                          8                          166
  CLUS_2                         17                          169
  CLUS_3                         48                          357
  CLUS_4                         43                           91
  CLUS_5                         31                           95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(20P13) MUTATED       28     16     60
  DEL PEAK 38(20P13) WILD-TYPE    221    240    149
D66V11, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         28                          221
  CLUS_2                         16                          240
  CLUS_3                         60                          149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(20P13) MUTATED       41      2     23     18      4     16
  DEL PEAK 38(20P13) WILD-TYPE     86     65    170    117    121     51
D66V12, multiclass
        clus
vv       DEL PEAK 38(20P13) MUTATED DEL PEAK 38(20P13) WILD-TYPE
  CLUS_1                         41                           86
  CLUS_2                          2                           65
  CLUS_3                         23                          170
  CLUS_4                         18                          117
  CLUS_5                          4                          121
  CLUS_6                         16                           51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 39(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED        3     11     37     16     11     23
  DEL PEAK 39(21Q11.2) WILD-TYPE     18     25     82     80     98     49
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 39(21Q11.2) MUTATED        3      4
  DEL PEAK 39(21Q11.2) WILD-TYPE     17     36
D67V1, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                            3                             18
  CLUS_2                           11                             25
  CLUS_3                           37                             82
  CLUS_4                           16                             80
  CLUS_5                           11                             98
  CLUS_6                           23                             49
  CLUS_7                            3                             17
  CLUS_8                            4                             36
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED       31     22     32     15      8
  DEL PEAK 39(21Q11.2) WILD-TYPE     70    130     82     73     50
D67V2, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           31                             70
  CLUS_2                           22                            130
  CLUS_3                           32                             82
  CLUS_4                           15                             73
  CLUS_5                            8                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED       31     85     17     66     10
  DEL PEAK 39(21Q11.2) WILD-TYPE    368    155     82    198     32
D67V3, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           31                            368
  CLUS_2                           85                            155
  CLUS_3                           17                             82
  CLUS_4                           66                            198
  CLUS_5                           10                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED       22     38     53      8     18
  DEL PEAK 39(21Q11.2) WILD-TYPE    110    159    124     80    110
D67V4, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           22                            110
  CLUS_2                           38                            159
  CLUS_3                           53                            124
  CLUS_4                            8                             80
  CLUS_5                           18                            110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(21Q11.2) MUTATED       43     25     21
  DEL PEAK 39(21Q11.2) WILD-TYPE    106    107     96
D67V5, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           43                            106
  CLUS_2                           25                            107
  CLUS_3                           21                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED        9     17     18     36      9
  DEL PEAK 39(21Q11.2) WILD-TYPE     55     89     72     71     22
D67V6, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           17                             89
  CLUS_3                           18                             72
  CLUS_4                           36                             71
  CLUS_5                            9                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED       31     21     33     44     70      6
  DEL PEAK 39(21Q11.2) WILD-TYPE    159    122    201    117    174     46
                                vv
clus                             CLUS_7
  DEL PEAK 39(21Q11.2) MUTATED        3
  DEL PEAK 39(21Q11.2) WILD-TYPE     13
D67V7, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           31                            159
  CLUS_2                           21                            122
  CLUS_3                           33                            201
  CLUS_4                           44                            117
  CLUS_5                           70                            174
  CLUS_6                            6                             46
  CLUS_7                            3                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED       29     35     22     62     45     15
  DEL PEAK 39(21Q11.2) WILD-TYPE    149    208    175    118    139     43
D67V8, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           29                            149
  CLUS_2                           35                            208
  CLUS_3                           22                            175
  CLUS_4                           62                            118
  CLUS_5                           45                            139
  CLUS_6                           15                             43
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(21Q11.2) MUTATED       42     94     68
  DEL PEAK 39(21Q11.2) WILD-TYPE    264    328    229
D67V9, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           42                            264
  CLUS_2                           94                            328
  CLUS_3                           68                            229
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(21Q11.2) MUTATED       20     26    105     20     33
  DEL PEAK 39(21Q11.2) WILD-TYPE    154    160    300    114     93
D67V10, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           20                            154
  CLUS_2                           26                            160
  CLUS_3                          105                            300
  CLUS_4                           20                            114
  CLUS_5                           33                             93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(21Q11.2) MUTATED       53     38     40
  DEL PEAK 39(21Q11.2) WILD-TYPE    196    218    169
D67V11, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           53                            196
  CLUS_2                           38                            218
  CLUS_3                           40                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(21Q11.2) MUTATED       18      6     52     24     14     17
  DEL PEAK 39(21Q11.2) WILD-TYPE    109     61    141    111    111     50
D67V12, multiclass
        clus
vv       DEL PEAK 39(21Q11.2) MUTATED DEL PEAK 39(21Q11.2) WILD-TYPE
  CLUS_1                           18                            109
  CLUS_2                            6                             61
  CLUS_3                           52                            141
  CLUS_4                           24                            111
  CLUS_5                           14                            111
  CLUS_6                           17                             50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 40(22Q11.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q11.1) MUTATED        7     19     60     43     46     27
  DEL PEAK 40(22Q11.1) WILD-TYPE     14     17     59     53     63     45
                                vv
clus                             CLUS_7 CLUS_8
  DEL PEAK 40(22Q11.1) MUTATED       12     16
  DEL PEAK 40(22Q11.1) WILD-TYPE      8     24
D68V1, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                            7                             14
  CLUS_2                           19                             17
  CLUS_3                           60                             59
  CLUS_4                           43                             53
  CLUS_5                           46                             63
  CLUS_6                           27                             45
  CLUS_7                           12                              8
  CLUS_8                           16                             24
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q11.1) MUTATED       53     68     48     39     22
  DEL PEAK 40(22Q11.1) WILD-TYPE     48     84     66     49     36
D68V2, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                           53                             48
  CLUS_2                           68                             84
  CLUS_3                           48                             66
  CLUS_4                           39                             49
  CLUS_5                           22                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q11.1) MUTATED      126    123     64    125     15
  DEL PEAK 40(22Q11.1) WILD-TYPE    273    117     35    139     27
D68V3, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                          126                            273
  CLUS_2                          123                            117
  CLUS_3                           64                             35
  CLUS_4                          125                            139
  CLUS_5                           15                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q11.1) MUTATED       63     78     91     29     51
  DEL PEAK 40(22Q11.1) WILD-TYPE     69    119     86     59     77
D68V4, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                           63                             69
  CLUS_2                           78                            119
  CLUS_3                           91                             86
  CLUS_4                           29                             59
  CLUS_5                           51                             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q11.1) MUTATED       66     69     52
  DEL PEAK 40(22Q11.1) WILD-TYPE     83     63     65
D68V5, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                           66                             83
  CLUS_2                           69                             63
  CLUS_3                           52                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q11.1) MUTATED       36     46     41     55      9
  DEL PEAK 40(22Q11.1) WILD-TYPE     28     60     49     52     22
D68V6, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                           36                             28
  CLUS_2                           46                             60
  CLUS_3                           41                             49
  CLUS_4                           55                             52
  CLUS_5                            9                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q11.1) MUTATED       80     55    109     67    115     18
  DEL PEAK 40(22Q11.1) WILD-TYPE    110     88    125     94    129     34
                                vv
clus                             CLUS_7
  DEL PEAK 40(22Q11.1) MUTATED        8
  DEL PEAK 40(22Q11.1) WILD-TYPE      8
D68V7, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                           80                            110
  CLUS_2                           55                             88
  CLUS_3                          109                            125
  CLUS_4                           67                             94
  CLUS_5                          115                            129
  CLUS_6                           18                             34
  CLUS_7                            8                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q11.1) MUTATED       77    103     77     89     86     20
  DEL PEAK 40(22Q11.1) WILD-TYPE    101    140    120     91     98     38
D68V8, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                           77                            101
  CLUS_2                          103                            140
  CLUS_3                           77                            120
  CLUS_4                           89                             91
  CLUS_5                           86                             98
  CLUS_6                           20                             38
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q11.1) MUTATED      116    192    134
  DEL PEAK 40(22Q11.1) WILD-TYPE    190    230    163
D68V9, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                          116                            190
  CLUS_2                          192                            230
  CLUS_3                          134                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(22Q11.1) MUTATED       61     70    201     60     50
  DEL PEAK 40(22Q11.1) WILD-TYPE    113    116    204     74     76
D68V10, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                           61                            113
  CLUS_2                           70                            116
  CLUS_3                          201                            204
  CLUS_4                           60                             74
  CLUS_5                           50                             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(22Q11.1) MUTATED      105    103     97
  DEL PEAK 40(22Q11.1) WILD-TYPE    144    153    112
D68V11, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                          105                            144
  CLUS_2                          103                            153
  CLUS_3                           97                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(22Q11.1) MUTATED       54     26    100     52     47     26
  DEL PEAK 40(22Q11.1) WILD-TYPE     73     41     93     83     78     41
D68V12, multiclass
        clus
vv       DEL PEAK 40(22Q11.1) MUTATED DEL PEAK 40(22Q11.1) WILD-TYPE
  CLUS_1                           54                             73
  CLUS_2                           26                             41
  CLUS_3                          100                             93
  CLUS_4                           52                             83
  CLUS_5                           47                             78
  CLUS_6                           26                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 41(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q13.32) MUTATED        6     18     64     41     47     29
  DEL PEAK 41(22Q13.32) WILD-TYPE     15     18     55     55     62     43
                                 vv
clus                              CLUS_7 CLUS_8
  DEL PEAK 41(22Q13.32) MUTATED       12     18
  DEL PEAK 41(22Q13.32) WILD-TYPE      8     22
D69V1, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                             6                              15
  CLUS_2                            18                              18
  CLUS_3                            64                              55
  CLUS_4                            41                              55
  CLUS_5                            47                              62
  CLUS_6                            29                              43
  CLUS_7                            12                               8
  CLUS_8                            18                              22
[1] 8 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q13.32) MUTATED       62     68     46     37     22
  DEL PEAK 41(22Q13.32) WILD-TYPE     39     84     68     51     36
D69V2, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            62                              39
  CLUS_2                            68                              84
  CLUS_3                            46                              68
  CLUS_4                            37                              51
  CLUS_5                            22                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q13.32) MUTATED      132    134     68    127     20
  DEL PEAK 41(22Q13.32) WILD-TYPE    267    106     31    137     22
D69V3, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                           132                             267
  CLUS_2                           134                             106
  CLUS_3                            68                              31
  CLUS_4                           127                             137
  CLUS_5                            20                              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q13.32) MUTATED       67     85     93     34     52
  DEL PEAK 41(22Q13.32) WILD-TYPE     65    112     84     54     76
D69V4, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            67                              65
  CLUS_2                            85                             112
  CLUS_3                            93                              84
  CLUS_4                            34                              54
  CLUS_5                            52                              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q13.32) MUTATED       66     72     53
  DEL PEAK 41(22Q13.32) WILD-TYPE     83     60     64
D69V5, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            66                              83
  CLUS_2                            72                              60
  CLUS_3                            53                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q13.32) MUTATED       38     48     37     59      9
  DEL PEAK 41(22Q13.32) WILD-TYPE     26     58     53     48     22
D69V6, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            38                              26
  CLUS_2                            48                              58
  CLUS_3                            37                              53
  CLUS_4                            59                              48
  CLUS_5                             9                              22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q13.32) MUTATED       81     57    116     67    132     18
  DEL PEAK 41(22Q13.32) WILD-TYPE    109     86    118     94    112     34
                                 vv
clus                              CLUS_7
  DEL PEAK 41(22Q13.32) MUTATED        9
  DEL PEAK 41(22Q13.32) WILD-TYPE      7
D69V7, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            81                             109
  CLUS_2                            57                              86
  CLUS_3                           116                             118
  CLUS_4                            67                              94
  CLUS_5                           132                             112
  CLUS_6                            18                              34
  CLUS_7                             9                               7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q13.32) MUTATED       76    108     79     98    100     19
  DEL PEAK 41(22Q13.32) WILD-TYPE    102    135    118     82     84     39
D69V8, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            76                             102
  CLUS_2                           108                             135
  CLUS_3                            79                             118
  CLUS_4                            98                              82
  CLUS_5                           100                              84
  CLUS_6                            19                              39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q13.32) MUTATED      126    210    136
  DEL PEAK 41(22Q13.32) WILD-TYPE    180    212    161
D69V9, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                           126                             180
  CLUS_2                           210                             212
  CLUS_3                           136                             161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(22Q13.32) MUTATED       68     75    214     59     56
  DEL PEAK 41(22Q13.32) WILD-TYPE    106    111    191     75     70
D69V10, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            68                             106
  CLUS_2                            75                             111
  CLUS_3                           214                             191
  CLUS_4                            59                              75
  CLUS_5                            56                              70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(22Q13.32) MUTATED      121    111     97
  DEL PEAK 41(22Q13.32) WILD-TYPE    128    145    112
D69V11, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                           121                             128
  CLUS_2                           111                             145
  CLUS_3                            97                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(22Q13.32) MUTATED       54     28    106     62     52     27
  DEL PEAK 41(22Q13.32) WILD-TYPE     73     39     87     73     73     40
D69V12, multiclass
        clus
vv       DEL PEAK 41(22Q13.32) MUTATED DEL PEAK 41(22Q13.32) WILD-TYPE
  CLUS_1                            54                              73
  CLUS_2                            28                              39
  CLUS_3                           106                              87
  CLUS_4                            62                              73
  CLUS_5                            52                              73
  CLUS_6                            27                              40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
