Correlation between gene mutation status and molecular subtypes
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 152 genes and 12 molecular subtypes across 976 patients, 49 significant findings detected with P value < 0.05 and Q value < 0.25.

  • PIK3CA mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TP53 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GATA3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAP3K1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CBFB mutation correlated to 'MRNASEQ_CNMF'.

  • MAP2K4 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 152 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 49 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
PIK3CA 316 (32%) 660 1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		0.00013
(0.207) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163)
TP53 295 (30%) 681 1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163)
GATA3 97 (10%) 879 1e-05
(0.0163) 		1e-05
(0.0163) 		0.00114
(1.00) 		3e-05
(0.0478) 		0.0158
(1.00) 		0.00012
(0.191) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163)
CDH1 106 (11%) 870 0.00035
(0.554) 		0.00607
(1.00) 		1e-05
(0.0163) 		1e-05
(0.0163) 		0.00852
(1.00) 		0.0194
(1.00) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163) 		1e-05
(0.0163)
MAP3K1 70 (7%) 906 3e-05
(0.0478) 		0.00015
(0.238) 		0.00101
(1.00) 		0.0507
(1.00) 		0.00056
(0.884) 		1e-05
(0.0163) 		0.00021
(0.333) 		6e-05
(0.0955) 		0.00013
(0.207) 		0.00021
(0.333) 		0.00043
(0.68) 		0.0208
(1.00)
CBFB 23 (2%) 953 0.0934
(1.00) 		0.216
(1.00) 		0.02
(1.00) 		0.133
(1.00) 		0.111
(1.00) 		0.0811
(1.00) 		3e-05
(0.0478) 		0.00036
(0.57) 		0.0133
(1.00) 		0.00341
(1.00) 		0.0052
(1.00) 		0.00133
(1.00)
MAP2K4 32 (3%) 944 0.0576
(1.00) 		0.00423
(1.00) 		0.0419
(1.00) 		0.047
(1.00) 		0.00234
(1.00) 		0.292
(1.00) 		0.0058
(1.00) 		0.00791
(1.00) 		0.00046
(0.727) 		0.00054
(0.853) 		3e-05
(0.0478) 		0.0016
(1.00)
RUNX1 29 (3%) 947 0.0159
(1.00) 		0.0869
(1.00) 		0.00508
(1.00) 		0.168
(1.00) 		1
(1.00) 		0.299
(1.00) 		0.0478
(1.00) 		0.0299
(1.00) 		0.0134
(1.00) 		0.264
(1.00) 		0.223
(1.00) 		0.316
(1.00)
PTEN 35 (4%) 941 0.311
(1.00) 		0.904
(1.00) 		0.548
(1.00) 		0.654
(1.00) 		0.921
(1.00) 		0.975
(1.00) 		0.421
(1.00) 		0.372
(1.00) 		0.763
(1.00) 		0.495
(1.00) 		0.2
(1.00) 		0.949
(1.00)
ARID1A 27 (3%) 949 0.303
(1.00) 		0.94
(1.00) 		0.0839
(1.00) 		0.26
(1.00) 		1
(1.00) 		0.243
(1.00) 		0.114
(1.00) 		0.773
(1.00) 		0.227
(1.00) 		0.0708
(1.00) 		0.151
(1.00) 		0.381
(1.00)
MLL3 69 (7%) 907 0.669
(1.00) 		0.154
(1.00) 		0.387
(1.00) 		0.356
(1.00) 		0.638
(1.00) 		0.527
(1.00) 		0.0436
(1.00) 		0.121
(1.00) 		0.0624
(1.00) 		0.364
(1.00) 		0.177
(1.00) 		0.219
(1.00)
FOXA1 23 (2%) 953 0.366
(1.00) 		0.532
(1.00) 		0.0538
(1.00) 		0.0446
(1.00) 		0.894
(1.00) 		0.95
(1.00) 		0.0731
(1.00) 		0.177
(1.00) 		0.134
(1.00) 		0.695
(1.00) 		0.0757
(1.00) 		0.549
(1.00)
RBMX 14 (1%) 962 0.385
(1.00) 		0.105
(1.00) 		0.0973
(1.00) 		0.141
(1.00) 		0.556
(1.00) 		0.585
(1.00) 		0.0728
(1.00) 		0.246
(1.00) 		0.615
(1.00) 		0.541
(1.00) 		0.248
(1.00) 		0.628
(1.00)
TBX3 27 (3%) 949 0.576
(1.00) 		0.627
(1.00) 		0.341
(1.00) 		0.375
(1.00) 		0.0828
(1.00) 		0.975
(1.00) 		0.143
(1.00) 		0.388
(1.00) 		0.0983
(1.00) 		0.0855
(1.00) 		0.387
(1.00) 		0.0244
(1.00)
THEM5 11 (1%) 965 0.262
(1.00) 		0.871
(1.00) 		0.259
(1.00) 		0.29
(1.00) 		0.208
(1.00) 		0.122
(1.00) 		0.855
(1.00) 		0.994
(1.00) 		0.721
(1.00) 		0.825
(1.00) 		0.838
(1.00) 		0.484
(1.00)
RB1 19 (2%) 957 0.88
(1.00) 		0.303
(1.00) 		0.0729
(1.00) 		0.118
(1.00) 		0.442
(1.00) 		0.773
(1.00) 		0.186
(1.00) 		0.0279
(1.00) 		0.0507
(1.00) 		0.0312
(1.00) 		0.00831
(1.00) 		0.125
(1.00)
NF1 27 (3%) 949 0.574
(1.00) 		0.804
(1.00) 		0.481
(1.00) 		0.152
(1.00) 		0.937
(1.00) 		0.261
(1.00) 		0.0919
(1.00) 		0.0989
(1.00) 		0.847
(1.00) 		0.87
(1.00) 		0.479
(1.00) 		0.758
(1.00)
ACTL6B 10 (1%) 966 0.35
(1.00) 		0.287
(1.00) 		0.0373
(1.00) 		0.287
(1.00) 		0.864
(1.00) 		0.353
(1.00) 		0.667
(1.00) 		0.628
(1.00) 		0.665
(1.00) 		0.754
(1.00) 		0.861
(1.00) 		1
(1.00)
SPEN 32 (3%) 944 0.665
(1.00) 		0.789
(1.00) 		0.496
(1.00) 		0.274
(1.00) 		0.943
(1.00) 		0.34
(1.00) 		0.16
(1.00) 		0.168
(1.00) 		0.025
(1.00) 		0.0291
(1.00) 		0.362
(1.00) 		0.0653
(1.00)
CDKN1B 10 (1%) 966 0.64
(1.00) 		0.738
(1.00) 		0.203
(1.00) 		0.321
(1.00) 		0.738
(1.00) 		0.441
(1.00) 		0.0825
(1.00) 		0.174
(1.00) 		0.0232
(1.00) 		0.595
(1.00) 		0.331
(1.00) 		0.406
(1.00)
NCOR1 41 (4%) 935 0.74
(1.00) 		0.967
(1.00) 		0.969
(1.00) 		0.646
(1.00) 		0.436
(1.00) 		0.524
(1.00) 		0.656
(1.00) 		0.161
(1.00) 		0.862
(1.00) 		0.301
(1.00) 		1
(1.00) 		0.179
(1.00)
SF3B1 16 (2%) 960 0.845
(1.00) 		0.845
(1.00) 		0.43
(1.00) 		0.0462
(1.00) 		0.451
(1.00) 		0.164
(1.00) 		0.53
(1.00) 		0.709
(1.00) 		0.0447
(1.00) 		0.643
(1.00) 		0.672
(1.00) 		0.28
(1.00)
ZFP36L1 9 (1%) 967 0.403
(1.00) 		0.898
(1.00) 		0.00632
(1.00) 		0.055
(1.00) 		0.0264
(1.00) 		0.231
(1.00) 		0.454
(1.00) 		0.156
(1.00) 		0.532
(1.00) 		0.655
(1.00) 		1
(1.00) 		0.859
(1.00)
KRAS 6 (1%) 970 0.54
(1.00) 		0.632
(1.00) 		0.353
(1.00) 		0.258
(1.00) 		0.2
(1.00) 		0.712
(1.00) 		0.315
(1.00) 		0.37
(1.00) 		0.667
(1.00) 		0.642
(1.00) 		0.743
(1.00) 		0.103
(1.00)
TCP11 6 (1%) 970 0.783
(1.00) 		0.512
(1.00) 		0.481
(1.00) 		0.863
(1.00) 		0.919
(1.00) 		0.771
(1.00) 		0.773
(1.00) 		0.887
(1.00) 		0.73
(1.00)
AQP12A 6 (1%) 970 0.623
(1.00) 		0.733
(1.00) 		0.281
(1.00) 		0.166
(1.00) 		0.2
(1.00) 		0.134
(1.00) 		0.742
(1.00) 		0.949
(1.00) 		1
(1.00) 		0.287
(1.00) 		1
(1.00) 		0.902
(1.00)
DLG1 13 (1%) 963 0.34
(1.00) 		0.322
(1.00) 		0.594
(1.00) 		0.102
(1.00) 		0.892
(1.00) 		0.0959
(1.00) 		0.0726
(1.00) 		0.136
(1.00) 		0.244
(1.00) 		0.0194
(1.00) 		0.744
(1.00) 		0.431
(1.00)
MYB 12 (1%) 964 0.74
(1.00) 		0.0284
(1.00) 		0.266
(1.00) 		0.619
(1.00) 		1
(1.00) 		0.685
(1.00) 		0.901
(1.00) 		0.11
(1.00) 		0.579
(1.00) 		0.784
(1.00) 		0.0538
(1.00) 		0.781
(1.00)
RPGR 19 (2%) 957 0.968
(1.00) 		0.703
(1.00) 		0.952
(1.00) 		0.535
(1.00) 		0.743
(1.00) 		0.238
(1.00) 		0.597
(1.00) 		0.57
(1.00) 		0.572
(1.00) 		0.308
(1.00) 		0.768
(1.00) 		0.896
(1.00)
TBL1XR1 10 (1%) 966 0.158
(1.00) 		0.0823
(1.00) 		0.0501
(1.00) 		0.926
(1.00) 		0.448
(1.00) 		0.134
(1.00) 		0.0575
(1.00) 		0.0342
(1.00) 		0.237
(1.00) 		0.393
(1.00) 		0.64
(1.00) 		0.204
(1.00)
KDM6A 16 (2%) 960 0.74
(1.00) 		0.344
(1.00) 		0.234
(1.00) 		0.626
(1.00) 		0.639
(1.00) 		0.874
(1.00) 		0.557
(1.00) 		0.477
(1.00) 		0.855
(1.00) 		0.234
(1.00) 		0.144
(1.00) 		0.135
(1.00)
MYH9 18 (2%) 958 0.397
(1.00) 		0.423
(1.00) 		0.207
(1.00) 		0.571
(1.00) 		0.821
(1.00) 		0.0208
(1.00) 		0.445
(1.00) 		0.605
(1.00) 		0.757
(1.00) 		0.91
(1.00) 		0.64
(1.00) 		0.275
(1.00)
HLA-C 9 (1%) 967 0.139
(1.00) 		0.85
(1.00) 		0.775
(1.00) 		0.275
(1.00) 		0.398
(1.00) 		0.77
(1.00) 		0.336
(1.00) 		0.38
(1.00) 		0.234
(1.00) 		0.00634
(1.00) 		0.141
(1.00) 		0.112
(1.00)
RAB42 4 (0%) 972 0.405
(1.00) 		0.0698
(1.00) 		0.372
(1.00) 		0.4
(1.00) 		0.496
(1.00) 		0.196
(1.00) 		0.126
(1.00) 		0.218
(1.00) 		0.0108
(1.00)
FGFR2 11 (1%) 965 0.915
(1.00) 		0.878
(1.00) 		0.354
(1.00) 		0.37
(1.00) 		1
(1.00) 		0.917
(1.00) 		0.277
(1.00) 		0.0731
(1.00) 		0.545
(1.00) 		0.6
(1.00) 		0.245
(1.00) 		0.66
(1.00)
ERBB2 21 (2%) 955 0.778
(1.00) 		0.572
(1.00) 		0.0408
(1.00) 		0.0577
(1.00) 		0.551
(1.00) 		0.882
(1.00) 		0.0879
(1.00) 		0.148
(1.00) 		0.00189
(1.00) 		0.332
(1.00) 		0.232
(1.00) 		0.123
(1.00)
CTCF 17 (2%) 959 0.0588
(1.00) 		0.0434
(1.00) 		0.00385
(1.00) 		0.0326
(1.00) 		0.0631
(1.00) 		0.126
(1.00) 		0.0228
(1.00) 		0.1
(1.00) 		0.0355
(1.00) 		0.0118
(1.00) 		0.226
(1.00) 		0.215
(1.00)
ZMYM3 14 (1%) 962 0.497
(1.00) 		0.441
(1.00) 		0.915
(1.00) 		0.447
(1.00) 		0.128
(1.00) 		0.284
(1.00) 		0.509
(1.00) 		0.344
(1.00) 		0.584
(1.00) 		1
(1.00) 		1
(1.00) 		0.903
(1.00)
FRMPD2 12 (1%) 964 0.821
(1.00) 		1
(1.00) 		0.6
(1.00) 		0.0963
(1.00) 		0.467
(1.00) 		0.883
(1.00) 		0.538
(1.00) 		0.0378
(1.00) 		0.936
(1.00) 		0.746
(1.00) 		0.395
(1.00) 		0.257
(1.00)
TFE3 7 (1%) 969 0.677
(1.00) 		0.902
(1.00) 		0.673
(1.00) 		0.643
(1.00) 		1
(1.00) 		0.548
(1.00) 		0.626
(1.00) 		0.404
(1.00) 		0.5
(1.00) 		0.0238
(1.00) 		0.512
(1.00) 		0.649
(1.00)
GPS2 11 (1%) 965 0.0137
(1.00) 		0.0478
(1.00) 		0.0603
(1.00) 		0.342
(1.00) 		0.265
(1.00) 		0.746
(1.00) 		0.159
(1.00) 		0.0952
(1.00) 		0.405
(1.00) 		0.633
(1.00) 		1
(1.00) 		0.207
(1.00)
DOCK11 20 (2%) 956 0.667
(1.00) 		0.448
(1.00) 		0.276
(1.00) 		0.426
(1.00) 		0.363
(1.00) 		0.0652
(1.00) 		0.26
(1.00) 		0.0176
(1.00) 		0.504
(1.00) 		0.016
(1.00) 		0.0407
(1.00) 		0.167
(1.00)
HRNR 31 (3%) 945 0.988
(1.00) 		0.782
(1.00) 		0.143
(1.00) 		0.747
(1.00) 		0.592
(1.00) 		0.72
(1.00) 		0.987
(1.00) 		0.702
(1.00) 		0.484
(1.00) 		0.217
(1.00) 		0.908
(1.00) 		0.52
(1.00)
CASZ1 14 (1%) 962 0.937
(1.00) 		0.855
(1.00) 		0.971
(1.00) 		0.529
(1.00) 		0.111
(1.00) 		0.938
(1.00) 		0.98
(1.00) 		0.699
(1.00) 		0.941
(1.00) 		0.863
(1.00) 		0.92
(1.00) 		0.958
(1.00)
CDC42EP1 5 (1%) 971 0.52
(1.00) 		0.463
(1.00) 		0.513
(1.00) 		0.259
(1.00) 		1
(1.00) 		0.584
(1.00) 		0.254
(1.00) 		0.555
(1.00) 		0.612
(1.00) 		0.0843
(1.00)
C1QTNF5 7 (1%) 969 0.647
(1.00) 		0.199
(1.00) 		0.508
(1.00) 		0.645
(1.00) 		0.711
(1.00) 		0.529
(1.00) 		0.285
(1.00) 		0.303
(1.00) 		0.00993
(1.00) 		0.261
(1.00) 		0.124
(1.00)
TGS1 13 (1%) 963 0.634
(1.00) 		0.666
(1.00) 		0.443
(1.00) 		0.248
(1.00) 		0.114
(1.00) 		0.709
(1.00) 		0.756
(1.00) 		0.0796
(1.00) 		0.193
(1.00) 		0.155
(1.00) 		0.802
(1.00) 		0.0866
(1.00)
USP36 8 (1%) 968 0.837
(1.00) 		0.183
(1.00) 		1
(1.00) 		1
(1.00) 		0.714
(1.00) 		0.315
(1.00) 		0.554
(1.00) 		0.128
(1.00) 		0.904
(1.00) 		0.363
(1.00) 		1
(1.00) 		0.902
(1.00)
ASB10 8 (1%) 968 0.944
(1.00) 		0.0647
(1.00) 		1
(1.00) 		0.5
(1.00) 		0.763
(1.00) 		0.828
(1.00) 		0.106
(1.00) 		0.222
(1.00) 		0.862
(1.00) 		0.643
(1.00)
EIF4A2 9 (1%) 967 0.234
(1.00) 		1
(1.00) 		0.884
(1.00) 		0.229
(1.00) 		1
(1.00) 		0.188
(1.00) 		0.0391
(1.00) 		0.0699
(1.00) 		0.763
(1.00) 		0.212
(1.00) 		0.592
(1.00) 		0.184
(1.00)
DNAH12 18 (2%) 958 1
(1.00) 		0.734
(1.00) 		0.627
(1.00) 		0.41
(1.00) 		0.453
(1.00) 		0.879
(1.00) 		0.156
(1.00) 		0.926
(1.00) 		0.715
(1.00) 		0.697
(1.00) 		0.287
(1.00) 		0.253
(1.00)
RHBG 4 (0%) 972 0.829
(1.00) 		0.188
(1.00) 		0.17
(1.00) 		0.492
(1.00) 		0.281
(1.00) 		0.291
(1.00) 		0.505
(1.00)
PAX2 4 (0%) 972 0.945
(1.00) 		0.335
(1.00) 		0.371
(1.00) 		0.296
(1.00) 		0.379
(1.00) 		0.318
(1.00) 		0.254
(1.00) 		0.0978
(1.00) 		0.943
(1.00)
FXYD5 5 (1%) 971 0.564
(1.00) 		0.787
(1.00) 		0.567
(1.00) 		0.642
(1.00) 		1
(1.00) 		0.178
(1.00) 		0.484
(1.00) 		0.337
(1.00) 		0.398
(1.00)
BCORL1 15 (2%) 961 0.149
(1.00) 		0.833
(1.00) 		0.542
(1.00) 		0.172
(1.00) 		0.29
(1.00) 		0.00796
(1.00) 		0.447
(1.00) 		0.331
(1.00) 		0.303
(1.00) 		0.872
(1.00) 		0.381
(1.00) 		0.641
(1.00)
ZNF362 5 (1%) 971 0.881
(1.00) 		0.871
(1.00) 		0.103
(1.00) 		0.153
(1.00) 		0.744
(1.00) 		0.409
(1.00) 		0.0502
(1.00) 		0.237
(1.00) 		0.0464
(1.00)
PTHLH 7 (1%) 969 0.229
(1.00) 		0.897
(1.00) 		0.0132
(1.00) 		0.181
(1.00) 		0.69
(1.00) 		0.678
(1.00) 		0.0489
(1.00) 		0.646
(1.00) 		0.16
(1.00) 		0.595
(1.00)
GPRIN2 11 (1%) 965 0.602
(1.00) 		0.627
(1.00) 		0.887
(1.00) 		0.64
(1.00) 		0.877
(1.00) 		0.0416
(1.00) 		0.789
(1.00) 		0.233
(1.00) 		0.783
(1.00) 		0.0682
(1.00) 		0.588
(1.00) 		0.22
(1.00)
ANKRD12 18 (2%) 958 0.277
(1.00) 		0.132
(1.00) 		0.563
(1.00) 		0.875
(1.00) 		0.385
(1.00) 		0.121
(1.00) 		0.19
(1.00) 		0.0329
(1.00) 		0.655
(1.00) 		0.934
(1.00) 		1
(1.00) 		0.538
(1.00)
ZNF687 11 (1%) 965 0.342
(1.00) 		0.129
(1.00) 		0.347
(1.00) 		0.132
(1.00) 		0.13
(1.00) 		0.0863
(1.00) 		0.0397
(1.00) 		0.131
(1.00) 		0.224
(1.00) 		0.0335
(1.00) 		0.525
(1.00) 		0.523
(1.00)
KCNN3 9 (1%) 967 0.145
(1.00) 		0.509
(1.00) 		0.216
(1.00) 		0.0979
(1.00) 		0.325
(1.00) 		0.829
(1.00) 		0.0756
(1.00) 		0.156
(1.00) 		0.259
(1.00) 		0.579
(1.00) 		0.279
(1.00) 		0.527
(1.00)
ICOSLG 5 (1%) 971 0.769
(1.00) 		0.131
(1.00) 		0.0072
(1.00) 		0.517
(1.00) 		0.822
(1.00) 		0.767
(1.00) 		0.287
(1.00) 		0.825
(1.00)
PIK3R1 15 (2%) 961 0.147
(1.00) 		0.185
(1.00) 		0.646
(1.00) 		0.239
(1.00) 		0.632
(1.00) 		0.0117
(1.00) 		0.13
(1.00) 		0.071
(1.00) 		0.0204
(1.00) 		0.347
(1.00) 		0.138
(1.00) 		0.725
(1.00)
MR1 7 (1%) 969 0.213
(1.00) 		0.703
(1.00) 		0.894
(1.00) 		0.346
(1.00) 		1
(1.00) 		1
(1.00) 		0.432
(1.00) 		0.641
(1.00) 		0.645
(1.00) 		0.221
(1.00) 		0.288
(1.00) 		0.796
(1.00)
CABYR 6 (1%) 970 0.904
(1.00) 		0.34
(1.00) 		0.0131
(1.00) 		0.00028
(0.444) 		0.525
(1.00) 		0.227
(1.00) 		0.0368
(1.00) 		0.0992
(1.00)
AKT2 5 (1%) 971 0.141
(1.00) 		1
(1.00) 		0.623
(1.00) 		0.243
(1.00) 		0.118
(1.00) 		0.216
(1.00) 		0.0661
(1.00) 		0.691
(1.00) 		0.291
(1.00) 		0.842
(1.00)
ZBTB7C 5 (1%) 971 0.46
(1.00) 		0.8
(1.00) 		0.88
(1.00) 		0.49
(1.00) 		0.741
(1.00) 		0.397
(1.00) 		0.779
(1.00) 		0.945
(1.00)
RIBC1 4 (0%) 972 0.591
(1.00) 		0.379
(1.00) 		0.461
(1.00) 		0.0537
(1.00) 		0.706
(1.00) 		1
(1.00) 		0.395
(1.00) 		0.845
(1.00)
CEP57 6 (1%) 970 0.374
(1.00) 		0.276
(1.00) 		0.104
(1.00) 		0.198
(1.00) 		0.143
(1.00) 		0.751
(1.00) 		0.0675
(1.00) 		0.517
(1.00) 		0.0604
(1.00) 		0.174
(1.00)
TARBP2 6 (1%) 970 0.662
(1.00) 		0.959
(1.00) 		0.107
(1.00) 		0.649
(1.00) 		0.167
(1.00) 		0.273
(1.00) 		0.508
(1.00) 		0.438
(1.00) 		0.134
(1.00) 		0.32
(1.00) 		0.196
(1.00) 		0.0108
(1.00)
OXCT2 4 (0%) 972 0.447
(1.00) 		0.543
(1.00) 		0.829
(1.00) 		0.933
(1.00) 		0.373
(1.00) 		1
(1.00) 		0.297
(1.00)
ANKRD20A4 7 (1%) 969 0.192
(1.00) 		0.0963
(1.00) 		0.802
(1.00) 		0.877
(1.00) 		0.779
(1.00) 		0.656
(1.00) 		0.0838
(1.00) 		0.0794
(1.00) 		1
(1.00) 		0.61
(1.00) 		0.636
(1.00) 		0.513
(1.00)
HIST1H3B 11 (1%) 965 0.552
(1.00) 		0.958
(1.00) 		0.661
(1.00) 		0.663
(1.00) 		0.632
(1.00) 		0.659
(1.00) 		0.254
(1.00) 		0.429
(1.00) 		0.807
(1.00) 		0.549
(1.00) 		0.88
(1.00) 		0.954
(1.00)
MED23 14 (1%) 962 0.0975
(1.00) 		0.284
(1.00) 		0.183
(1.00) 		0.0421
(1.00) 		0.155
(1.00) 		0.677
(1.00) 		0.138
(1.00) 		0.00209
(1.00) 		0.0429
(1.00) 		0.201
(1.00) 		0.12
(1.00) 		0.547
(1.00)
MUC6 14 (1%) 962 0.0203
(1.00) 		0.608
(1.00) 		0.5
(1.00) 		0.168
(1.00) 		0.366
(1.00) 		0.984
(1.00) 		0.0597
(1.00) 		0.253
(1.00) 		0.167
(1.00) 		0.0456
(1.00) 		0.191
(1.00) 		0.249
(1.00)
PSIP1 8 (1%) 968 0.69
(1.00) 		0.717
(1.00) 		0.475
(1.00) 		0.875
(1.00) 		0.691
(1.00) 		1
(1.00) 		0.544
(1.00) 		0.828
(1.00) 		0.191
(1.00) 		0.91
(1.00) 		1
(1.00) 		0.296
(1.00)
PCNXL2 21 (2%) 955 0.954
(1.00) 		0.937
(1.00) 		0.623
(1.00) 		0.909
(1.00) 		0.483
(1.00) 		0.323
(1.00) 		0.936
(1.00) 		0.338
(1.00) 		0.644
(1.00) 		0.771
(1.00) 		0.666
(1.00) 		0.516
(1.00)
SLC35B2 7 (1%) 969 1
(1.00) 		0.245
(1.00) 		0.96
(1.00) 		0.558
(1.00) 		0.557
(1.00) 		0.965
(1.00) 		0.829
(1.00) 		0.718
(1.00) 		0.664
(1.00) 		0.862
(1.00) 		0.759
(1.00)
ANGPT4 10 (1%) 966 0.202
(1.00) 		1
(1.00) 		0.26
(1.00) 		0.135
(1.00) 		0.517
(1.00) 		0.548
(1.00) 		0.00774
(1.00) 		0.0742
(1.00) 		0.191
(1.00) 		0.378
(1.00) 		0.719
(1.00) 		0.387
(1.00)
MKL1 5 (1%) 971 0.901
(1.00) 		0.685
(1.00) 		0.347
(1.00) 		0.779
(1.00) 		0.0991
(1.00) 		0.652
(1.00) 		0.0645
(1.00) 		0.526
(1.00) 		0.856
(1.00)
NBPF9 5 (1%) 971 0.618
(1.00) 		0.622
(1.00) 		0.809
(1.00) 		0.864
(1.00) 		1
(1.00) 		0.674
(1.00) 		0.198
(1.00) 		0.526
(1.00) 		0.341
(1.00)
PRICKLE3 11 (1%) 965 0.261
(1.00) 		0.0269
(1.00) 		1
(1.00) 		0.0472
(1.00) 		0.511
(1.00) 		0.588
(1.00) 		0.3
(1.00) 		0.34
(1.00) 		0.803
(1.00) 		0.553
(1.00) 		0.521
(1.00) 		0.119
(1.00)
CCDC82 6 (1%) 970 0.46
(1.00) 		0.0582
(1.00) 		0.713
(1.00) 		0.0383
(1.00) 		0.273
(1.00) 		0.335
(1.00) 		0.00539
(1.00) 		0.341
(1.00) 		0.345
(1.00) 		0.107
(1.00) 		0.962
(1.00)
CXCR3 6 (1%) 970 0.604
(1.00) 		0.791
(1.00) 		0.181
(1.00) 		0.801
(1.00) 		1
(1.00) 		1
(1.00) 		0.765
(1.00) 		0.618
(1.00) 		0.774
(1.00) 		0.582
(1.00) 		0.833
(1.00) 		0.213
(1.00)
TPP2 8 (1%) 968 0.0876
(1.00) 		0.946
(1.00) 		0.912
(1.00) 		0.675
(1.00) 		0.626
(1.00) 		0.392
(1.00) 		0.608
(1.00) 		0.758
(1.00) 		0.521
(1.00) 		0.941
(1.00)
C15ORF39 9 (1%) 967 0.604
(1.00) 		0.51
(1.00) 		0.00585
(1.00) 		0.0156
(1.00) 		0.64
(1.00) 		0.498
(1.00) 		0.0279
(1.00) 		0.00111
(1.00) 		0.0149
(1.00) 		0.0178
(1.00) 		0.00203
(1.00) 		0.00097
(1.00)
SDC1 3 (0%) 973 0.867
(1.00) 		0.338
(1.00) 		0.00824
(1.00) 		0.628
(1.00) 		0.91
(1.00)
CASP8 12 (1%) 964 0.467
(1.00) 		0.393
(1.00) 		0.123
(1.00) 		0.342
(1.00) 		0.529
(1.00) 		0.685
(1.00) 		0.177
(1.00) 		0.494
(1.00) 		0.54
(1.00) 		0.457
(1.00) 		0.743
(1.00) 		0.461
(1.00)
TNRC6B 18 (2%) 958 0.522
(1.00) 		0.155
(1.00) 		0.286
(1.00) 		0.945
(1.00) 		0.508
(1.00) 		0.417
(1.00) 		0.54
(1.00) 		0.441
(1.00) 		0.792
(1.00) 		0.775
(1.00) 		1
(1.00) 		0.822
(1.00)
IRS4 11 (1%) 965 0.144
(1.00) 		0.781
(1.00) 		0.279
(1.00) 		0.642
(1.00) 		0.382
(1.00) 		0.957
(1.00) 		0.118
(1.00) 		0.364
(1.00) 		0.781
(1.00) 		0.648
(1.00) 		1
(1.00) 		0.902
(1.00)
RHOA 6 (1%) 970 0.905
(1.00) 		0.588
(1.00) 		0.857
(1.00) 		0.394
(1.00) 		0.111
(1.00) 		0.282
(1.00) 		0.872
(1.00) 		0.124
(1.00) 		0.777
(1.00) 		0.581
(1.00) 		0.385
(1.00) 		0.403
(1.00)
TTPAL 4 (0%) 972 0.238
(1.00) 		0.305
(1.00) 		0.179
(1.00) 		0.645
(1.00) 		0.46
(1.00) 		0.386
(1.00) 		0.326
(1.00) 		0.215
(1.00) 		0.28
(1.00)
MLL4 13 (1%) 963 0.401
(1.00) 		0.511
(1.00) 		0.85
(1.00) 		0.59
(1.00) 		0.131
(1.00) 		0.392
(1.00) 		0.303
(1.00) 		0.222
(1.00) 		0.18
(1.00) 		0.102
(1.00) 		0.126
(1.00) 		0.223
(1.00)
ATHL1 10 (1%) 966 0.871
(1.00) 		0.321
(1.00) 		0.0502
(1.00) 		0.334
(1.00) 		1
(1.00) 		0.708
(1.00) 		1
(1.00) 		0.0287
(1.00) 		0.0853
(1.00) 		0.171
(1.00) 		0.124
(1.00) 		0.197
(1.00)
TMEM120B 5 (1%) 971 0.257
(1.00) 		0.251
(1.00) 		0.933
(1.00) 		1
(1.00) 		0.0488
(1.00) 		0.954
(1.00) 		0.74
(1.00) 		0.381
(1.00) 		0.204
(1.00) 		0.59
(1.00)
LILRA6 6 (1%) 970 0.658
(1.00) 		0.222
(1.00) 		0.748
(1.00) 		0.207
(1.00) 		0.61
(1.00) 		0.983
(1.00) 		0.964
(1.00) 		1
(1.00) 		0.478
(1.00) 		1
(1.00) 		0.712
(1.00)
MLH1 6 (1%) 970 0.797
(1.00) 		0.731
(1.00) 		1
(1.00) 		0.868
(1.00) 		0.716
(1.00) 		0.416
(1.00) 		0.184
(1.00) 		0.802
(1.00) 		1
(1.00) 		0.963
(1.00)
NUP93 4 (0%) 972 0.0184
(1.00) 		0.381
(1.00) 		0.0273
(1.00) 		0.594
(1.00) 		0.79
(1.00) 		0.761
(1.00)
ALDH1L1 9 (1%) 967 0.646
(1.00) 		0.92
(1.00) 		0.338
(1.00) 		0.529
(1.00) 		0.692
(1.00) 		0.51
(1.00) 		0.466
(1.00) 		0.404
(1.00) 		1
(1.00) 		0.366
(1.00) 		0.391
(1.00) 		0.603
(1.00)
LRIG2 7 (1%) 969 0.564
(1.00) 		0.0322
(1.00) 		0.216
(1.00) 		0.613
(1.00) 		0.207
(1.00) 		0.276
(1.00) 		0.317
(1.00) 		0.284
(1.00) 		0.721
(1.00) 		0.974
(1.00) 		0.512
(1.00) 		0.38
(1.00)
CCDC78 5 (1%) 971 0.437
(1.00) 		0.667
(1.00) 		0.654
(1.00) 		0.173
(1.00) 		1
(1.00) 		0.923
(1.00) 		0.74
(1.00) 		0.743
(1.00)
GAL3ST1 5 (1%) 971 0.76
(1.00) 		0.647
(1.00) 		0.47
(1.00) 		0.916
(1.00) 		0.34
(1.00) 		0.961
(1.00) 		0.385
(1.00) 		0.709
(1.00)
FAM20C 4 (0%) 972 0.603
(1.00) 		0.853
(1.00) 		0.24
(1.00) 		0.818
(1.00) 		0.643
(1.00) 		0.292
(1.00) 		0.357
(1.00)
RCC1 3 (0%) 973 0.717
(1.00) 		0.111
(1.00) 		0.197
(1.00) 		0.441
(1.00) 		0.417
(1.00) 		1
(1.00) 		0.402
(1.00)
SPTAN1 11 (1%) 965 0.787
(1.00) 		0.644
(1.00) 		0.624
(1.00) 		0.784
(1.00) 		0.113
(1.00) 		0.0494
(1.00) 		0.115
(1.00) 		0.122
(1.00) 		0.0927
(1.00) 		0.445
(1.00) 		0.13
(1.00) 		0.265
(1.00)
CHD4 19 (2%) 957 0.231
(1.00) 		0.356
(1.00) 		0.458
(1.00) 		0.0819
(1.00) 		0.195
(1.00) 		0.621
(1.00) 		0.0322
(1.00) 		0.157
(1.00) 		0.167
(1.00) 		0.0908
(1.00) 		0.47
(1.00) 		0.106
(1.00)
ZFP36L2 7 (1%) 969 0.396
(1.00) 		1
(1.00) 		0.0444
(1.00) 		0.543
(1.00) 		1
(1.00) 		1
(1.00) 		0.895
(1.00) 		0.385
(1.00) 		0.804
(1.00) 		0.973
(1.00) 		1
(1.00) 		1
(1.00)
STAG2 13 (1%) 963 0.285
(1.00) 		0.211
(1.00) 		0.216
(1.00) 		0.199
(1.00) 		0.878
(1.00) 		0.202
(1.00) 		0.193
(1.00) 		0.137
(1.00) 		0.22
(1.00) 		0.929
(1.00) 		0.51
(1.00) 		0.845
(1.00)
HIST1H2BC 6 (1%) 970 0.374
(1.00) 		0.0461
(1.00) 		0.786
(1.00) 		0.349
(1.00) 		0.392
(1.00) 		0.244
(1.00) 		0.322
(1.00) 		0.553
(1.00) 		0.886
(1.00) 		0.514
(1.00) 		1
(1.00) 		0.443
(1.00)
BPHL 5 (1%) 971 0.471
(1.00) 		0.468
(1.00) 		0.686
(1.00) 		0.691
(1.00) 		0.464
(1.00) 		0.117
(1.00) 		0.172
(1.00) 		0.285
(1.00) 		0.855
(1.00) 		0.509
(1.00) 		0.381
(1.00)
ATP2A1 11 (1%) 965 1
(1.00) 		0.683
(1.00) 		0.837
(1.00) 		0.735
(1.00) 		0.714
(1.00) 		0.332
(1.00) 		1
(1.00) 		0.901
(1.00) 		0.548
(1.00) 		0.949
(1.00)
LRRC37A3 10 (1%) 966 0.0364
(1.00) 		0.553
(1.00) 		0.938
(1.00) 		0.885
(1.00) 		0.399
(1.00) 		0.771
(1.00) 		0.176
(1.00) 		0.452
(1.00) 		0.559
(1.00) 		0.606
(1.00) 		0.392
(1.00) 		0.0676
(1.00)
EPDR1 5 (1%) 971 0.314
(1.00) 		0.823
(1.00) 		0.686
(1.00) 		0.555
(1.00) 		0.133
(1.00) 		0.207
(1.00) 		0.626
(1.00) 		0.82
(1.00) 		0.718
(1.00) 		0.383
(1.00) 		0.0971
(1.00)
EXOC4 8 (1%) 968 0.0106
(1.00) 		0.658
(1.00) 		0.347
(1.00) 		0.0754
(1.00) 		0.0116
(1.00) 		0.0146
(1.00) 		0.492
(1.00) 		0.589
(1.00) 		0.395
(1.00) 		0.152
(1.00)
C11ORF49 5 (1%) 971 0.166
(1.00) 		0.382
(1.00) 		0.116
(1.00) 		0.027
(1.00) 		0.0507
(1.00) 		0.0928
(1.00) 		0.0065
(1.00) 		0.218
(1.00)
ACTG1 8 (1%) 968 0.286
(1.00) 		0.39
(1.00) 		0.958
(1.00) 		0.0416
(1.00) 		0.588
(1.00) 		0.5
(1.00) 		0.819
(1.00) 		0.0818
(1.00) 		1
(1.00) 		0.114
(1.00)
ANXA11 3 (0%) 973 0.671
(1.00) 		0.499
(1.00) 		0.463
(1.00) 		0.0617
(1.00) 		0.898
(1.00) 		0.303
(1.00) 		0.953
(1.00) 		0.632
(1.00) 		0.757
(1.00)
PFKP 7 (1%) 969 0.407
(1.00) 		0.013
(1.00) 		0.229
(1.00) 		0.698
(1.00) 		0.282
(1.00) 		0.227
(1.00) 		0.473
(1.00) 		0.365
(1.00) 		0.376
(1.00) 		0.0979
(1.00) 		0.289
(1.00) 		0.506
(1.00)
GYLTL1B 4 (0%) 972 0.419
(1.00) 		0.72
(1.00) 		1
(1.00) 		0.688
(1.00) 		0.532
(1.00) 		0.687
(1.00) 		0.47
(1.00) 		0.82
(1.00) 		0.473
(1.00)
ANGPTL6 3 (0%) 973 0.865
(1.00) 		0.545
(1.00) 		0.907
(1.00)
SP3 7 (1%) 969 0.88
(1.00) 		0.552
(1.00) 		0.553
(1.00) 		0.91
(1.00) 		0.198
(1.00) 		0.459
(1.00) 		0.246
(1.00) 		0.594
(1.00) 		0.26
(1.00) 		0.831
(1.00)
RUFY1 6 (1%) 970 0.386
(1.00) 		0.731
(1.00) 		0.343
(1.00) 		0.162
(1.00) 		0.847
(1.00) 		0.00535
(1.00) 		0.667
(1.00) 		0.345
(1.00) 		0.319
(1.00) 		0.64
(1.00)
LIFR 9 (1%) 967 0.325
(1.00) 		0.481
(1.00) 		0.211
(1.00) 		0.279
(1.00) 		0.00796
(1.00) 		0.072
(1.00) 		0.476
(1.00) 		0.08
(1.00) 		0.439
(1.00) 		1
(1.00) 		1
(1.00) 		0.815
(1.00)
OR6C76 7 (1%) 969 0.291
(1.00) 		0.342
(1.00) 		0.422
(1.00) 		0.735
(1.00) 		0.519
(1.00) 		0.711
(1.00) 		0.503
(1.00) 		0.873
(1.00) 		0.499
(1.00) 		0.239
(1.00) 		0.532
(1.00) 		0.489
(1.00)
HCFC2 10 (1%) 966 0.0304
(1.00) 		0.551
(1.00) 		0.158
(1.00) 		0.843
(1.00) 		0.0278
(1.00) 		0.7
(1.00) 		0.923
(1.00) 		1
(1.00) 		1
(1.00) 		1
(1.00)
ACOT2 5 (1%) 971 0.185
(1.00) 		0.343
(1.00) 		0.414
(1.00) 		0.108
(1.00) 		0.736
(1.00) 		0.933
(1.00) 		0.338
(1.00) 		0.923
(1.00)
KIAA0430 15 (2%) 961 0.672
(1.00) 		0.747
(1.00) 		0.143
(1.00) 		0.151
(1.00) 		0.327
(1.00) 		0.275
(1.00) 		0.581
(1.00) 		0.586
(1.00) 		1
(1.00) 		0.808
(1.00) 		0.741
(1.00) 		0.231
(1.00)
GTF2IRD2 8 (1%) 968 0.573
(1.00) 		0.96
(1.00) 		0.0191
(1.00) 		0.519
(1.00) 		0.384
(1.00) 		0.957
(1.00) 		0.65
(1.00) 		0.707
(1.00) 		0.503
(1.00) 		0.559
(1.00) 		0.687
(1.00) 		0.021
(1.00)
NPAS4 9 (1%) 967 0.673
(1.00) 		0.146
(1.00) 		0.166
(1.00) 		0.537
(1.00) 		0.835
(1.00) 		0.883
(1.00) 		0.232
(1.00) 		0.0575
(1.00) 		0.147
(1.00) 		0.134
(1.00) 		0.389
(1.00) 		0.598
(1.00)
JAK1 11 (1%) 965 0.498
(1.00) 		0.476
(1.00) 		0.286
(1.00) 		0.462
(1.00) 		1
(1.00) 		0.731
(1.00) 		0.271
(1.00) 		0.318
(1.00) 		0.0517
(1.00) 		0.5
(1.00) 		0.231
(1.00) 		0.579
(1.00)
FGFR3 4 (0%) 972 0.0743
(1.00) 		0.922
(1.00) 		0.897
(1.00) 		0.435
(1.00) 		0.638
(1.00) 		0.217
(1.00) 		0.246
(1.00)
FBXW7 15 (2%) 961 0.812
(1.00) 		0.535
(1.00) 		0.168
(1.00) 		0.00416
(1.00) 		0.779
(1.00) 		0.548
(1.00) 		0.129
(1.00) 		0.0699
(1.00) 		0.304
(1.00) 		0.09
(1.00) 		0.342
(1.00) 		0.121
(1.00)
OR2T8 6 (1%) 970 0.782
(1.00) 		0.691
(1.00) 		0.766
(1.00) 		0.619
(1.00) 		0.03
(1.00) 		0.157
(1.00) 		0.164
(1.00) 		0.631
(1.00)
SHANK2 15 (2%) 961 0.105
(1.00) 		0.196
(1.00) 		0.833
(1.00) 		0.129
(1.00) 		0.0686
(1.00) 		0.124
(1.00) 		0.234
(1.00) 		0.227
(1.00) 		0.54
(1.00) 		0.634
(1.00) 		0.4
(1.00) 		0.711
(1.00)
TRMT2A 7 (1%) 969 0.954
(1.00) 		0.922
(1.00) 		0.722
(1.00) 		0.54
(1.00) 		0.393
(1.00) 		0.616
(1.00) 		0.779
(1.00) 		0.444
(1.00) 		0.889
(1.00) 		0.782
(1.00) 		0.392
(1.00) 		0.642
(1.00)
SHISA4 5 (1%) 971 0.0874
(1.00) 		0.732
(1.00) 		0.0503
(1.00) 		0.115
(1.00) 		0.129
(1.00) 		0.358
(1.00) 		0.461
(1.00) 		0.857
(1.00)
CCNL2 7 (1%) 969 0.863
(1.00) 		0.856
(1.00) 		1
(1.00) 		0.348
(1.00) 		0.15
(1.00) 		0.725
(1.00) 		0.426
(1.00) 		0.63
(1.00) 		1
(1.00) 		0.901
(1.00)
SEC14L5 7 (1%) 969 0.214
(1.00) 		0.00238
(1.00) 		0.125
(1.00) 		0.648
(1.00) 		0.392
(1.00) 		0.103
(1.00) 		0.405
(1.00) 		0.0361
(1.00) 		0.0582
(1.00) 		0.0427
(1.00) 		0.0235
(1.00) 		0.59
(1.00)
SARM1 6 (1%) 970 0.559
(1.00) 		0.116
(1.00) 		0.681
(1.00) 		0.644
(1.00) 		0.0365
(1.00) 		0.286
(1.00) 		0.0322
(1.00) 		0.0848
(1.00) 		0.328
(1.00) 		0.105
(1.00) 		0.217
(1.00)
CLEC18B 6 (1%) 970 0.567
(1.00) 		1
(1.00) 		0.65
(1.00) 		0.679
(1.00) 		0.4
(1.00) 		0.546
(1.00) 		0.659
(1.00) 		0.887
(1.00) 		0.776
(1.00) 		0.783
(1.00) 		0.51
(1.00) 		0.617
(1.00)
GIPC3 4 (0%) 972 0.832
(1.00) 		0.497
(1.00) 		0.461
(1.00) 		1
(1.00) 		0.17
(1.00) 		0.636
(1.00) 		0.709
(1.00) 		0.579
(1.00) 		0.846
(1.00)
HPS3 9 (1%) 967 0.12
(1.00) 		0.511
(1.00) 		0.199
(1.00) 		0.207
(1.00) 		0.112
(1.00) 		0.0497
(1.00) 		0.135
(1.00) 		0.005
(1.00) 		0.0467
(1.00) 		0.0425
(1.00) 		0.143
(1.00) 		0.0598
(1.00)
OR2T35 4 (0%) 972 1
(1.00) 		0.0943
(1.00) 		0.828
(1.00) 		0.904
(1.00) 		0.872
(1.00) 		0.58
(1.00) 		0.54
(1.00)
PPIL2 6 (1%) 970 0.498
(1.00) 		0.678
(1.00) 		0.427
(1.00) 		0.674
(1.00) 		1
(1.00) 		0.922
(1.00) 		0.0596
(1.00) 		0.711
(1.00)
ZNF397 7 (1%) 969 0.072
(1.00) 		0.849
(1.00) 		0.461
(1.00) 		0.594
(1.00) 		0.809
(1.00) 		0.393
(1.00) 		0.573
(1.00) 		0.321
(1.00) 		0.56
(1.00) 		0.523
(1.00)
MLL 17 (2%) 959 0.653
(1.00) 		0.647
(1.00) 		0.287
(1.00) 		0.233
(1.00) 		0.777
(1.00) 		0.248
(1.00) 		0.531
(1.00) 		0.241
(1.00) 		0.66
(1.00) 		0.243
(1.00) 		0.301
(1.00) 		0.301
(1.00)
ACVR1B 7 (1%) 969 0.89
(1.00) 		1
(1.00) 		0.904
(1.00) 		0.87
(1.00) 		0.559
(1.00) 		0.097
(1.00) 		0.729
(1.00) 		0.369
(1.00) 		0.271
(1.00) 		0.589
(1.00) 		0.291
(1.00) 		0.589
(1.00)
GPR158 3 (0%) 973 1
(1.00) 		0.444
(1.00) 		0.216
(1.00) 		0.114
(1.00) 		0.0762
(1.00)
ARHGEF15 9 (1%) 967 0.462
(1.00) 		0.2
(1.00) 		0.73
(1.00) 		0.541
(1.00) 		0.893
(1.00) 		0.744
(1.00) 		0.658
(1.00) 		0.284
(1.00) 		0.245
(1.00) 		0.776
(1.00) 		0.288
(1.00) 		0.798
(1.00)
TXNDC2 4 (0%) 972 0.504
(1.00) 		0.616
(1.00) 		0.522
(1.00) 		0.247
(1.00) 		0.218
(1.00) 		0.508
(1.00) 		0.105
(1.00) 		0.556
(1.00)
COL9A2 3 (0%) 973 0.359
(1.00) 		0.215
(1.00) 		0.418
(1.00) 		0.203
(1.00)
PARP4 12 (1%) 964 0.735
(1.00) 		0.82
(1.00) 		0.454
(1.00) 		0.149
(1.00) 		0.19
(1.00) 		0.0595
(1.00) 		0.0487
(1.00) 		0.47
(1.00) 		0.181
(1.00) 		0.494
(1.00)
'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S1.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PIK3CA MUTATED 7 13 23 8 61 23 8 21
PIK3CA WILD-TYPE 14 25 91 89 47 50 11 18

Figure S1.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S2.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PIK3CA MUTATED 19 70 39 5 31
PIK3CA WILD-TYPE 77 82 77 84 25

Figure S2.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S3.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PIK3CA MUTATED 147 52 53 51 11
PIK3CA WILD-TYPE 220 174 38 190 26

Figure S3.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S4.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PIK3CA MUTATED 7 81 53 31 36
PIK3CA WILD-TYPE 109 100 104 52 75

Figure S4.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.21

Table S5.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PIK3CA MUTATED 27 49 46
PIK3CA WILD-TYPE 119 80 72

Figure S5.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S6.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PIK3CA MUTATED 30 51 12 23 6
PIK3CA WILD-TYPE 29 58 78 81 25

Figure S6.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S7.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PIK3CA MUTATED 8 62 120 59 39 19 9
PIK3CA WILD-TYPE 171 73 95 97 186 29 6

Figure S7.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S8.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PIK3CA MUTATED 7 102 92 69 31 15
PIK3CA WILD-TYPE 161 120 96 103 140 37

Figure S8.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S9.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PIK3CA MUTATED 119 153 42
PIK3CA WILD-TYPE 151 260 232

Figure S9.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S10.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PIK3CA MUTATED 70 57 153 7 27
PIK3CA WILD-TYPE 82 117 237 118 89

Figure S10.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S11.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PIK3CA MUTATED 94 88 29
PIK3CA WILD-TYPE 154 129 158

Figure S11.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S12.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PIK3CA MUTATED 5 28 76 31 55 16
PIK3CA WILD-TYPE 110 35 113 86 53 44

Figure S12.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TP53 MUTATED 7 6 18 73 6 41 7 6
TP53 WILD-TYPE 14 32 96 24 102 32 12 33

Figure S13.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TP53 MUTATED 12 17 65 68 2
TP53 WILD-TYPE 84 135 51 21 54

Figure S14.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TP53 MUTATED 47 52 10 174 9
TP53 WILD-TYPE 320 174 81 67 28

Figure S15.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TP53 MUTATED 85 13 48 11 33
TP53 WILD-TYPE 31 168 109 72 78

Figure S16.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TP53 MUTATED 94 10 33
TP53 WILD-TYPE 52 119 85

Figure S17.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TP53 MUTATED 4 18 67 30 18
TP53 WILD-TYPE 55 91 23 74 13

Figure S18.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TP53 MUTATED 131 12 17 90 31 7 6
TP53 WILD-TYPE 48 123 198 66 194 41 9

Figure S19.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TP53 MUTATED 125 24 13 73 19 40
TP53 WILD-TYPE 43 198 175 99 152 12

Figure S20.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S21.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TP53 MUTATED 30 81 177
TP53 WILD-TYPE 240 332 97

Figure S21.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S22.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TP53 MUTATED 12 14 92 94 76
TP53 WILD-TYPE 140 160 298 31 40

Figure S22.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S23.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TP53 MUTATED 42 24 130
TP53 WILD-TYPE 206 193 57

Figure S23.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S24.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TP53 MUTATED 83 5 42 14 8 44
TP53 WILD-TYPE 32 58 147 103 100 16

Figure S24.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.55

Table S25.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDH1 MUTATED 0 6 2 1 10 6 1 7
CDH1 WILD-TYPE 21 32 112 96 98 67 18 32

Figure S25.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00607 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDH1 MUTATED 4 19 7 1 2
CDH1 WILD-TYPE 92 133 109 88 54

Figure S26.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S27.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CDH1 MUTATED 62 12 24 2 4
CDH1 WILD-TYPE 305 214 67 239 33

Figure S27.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S28.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDH1 MUTATED 0 25 19 18 20
CDH1 WILD-TYPE 116 156 138 65 91

Figure S28.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00852 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDH1 MUTATED 5 4 14
CDH1 WILD-TYPE 141 125 104

Figure S29.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDH1 MUTATED 1 12 1 7 2
CDH1 WILD-TYPE 58 97 89 97 29

Figure S30.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S31.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CDH1 MUTATED 1 32 34 11 12 15 1
CDH1 WILD-TYPE 178 103 181 145 213 33 14

Figure S31.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S32.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CDH1 MUTATED 1 59 20 15 8 3
CDH1 WILD-TYPE 167 163 168 157 163 49

Figure S32.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S33.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CDH1 MUTATED 76 24 4
CDH1 WILD-TYPE 194 389 270

Figure S33.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S34.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CDH1 MUTATED 54 17 31 0 2
CDH1 WILD-TYPE 98 157 359 125 114

Figure S34.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S35.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CDH1 MUTATED 13 64 3
CDH1 WILD-TYPE 235 153 184

Figure S35.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S36.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CDH1 MUTATED 0 9 12 5 52 2
CDH1 WILD-TYPE 115 54 177 112 56 58

Figure S36.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S37.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GATA3 MUTATED 1 6 27 2 18 4 2 0
GATA3 WILD-TYPE 20 32 87 95 90 69 17 39

Figure S37.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GATA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S38.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GATA3 MUTATED 28 22 5 1 4
GATA3 WILD-TYPE 68 130 111 88 52

Figure S38.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GATA3 MUTATED 43 30 12 10 1
GATA3 WILD-TYPE 324 196 79 231 36

Figure S39.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.048

Table S40.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GATA3 MUTATED 0 22 19 11 5
GATA3 WILD-TYPE 116 159 138 72 106

Figure S40.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 1

Table S41.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GATA3 MUTATED 12 24 10
GATA3 WILD-TYPE 134 105 108

Figure S41.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.19

Table S42.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GATA3 MUTATED 12 8 2 21 3
GATA3 WILD-TYPE 47 101 88 83 28

Figure S42.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S43.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GATA3 MUTATED 1 14 33 6 41 1 0
GATA3 WILD-TYPE 178 121 182 150 184 47 15

Figure S43.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S44.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GATA3 MUTATED 0 12 36 15 33 0
GATA3 WILD-TYPE 168 210 152 157 138 52

Figure S44.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S45.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GATA3 MUTATED 21 65 9
GATA3 WILD-TYPE 249 348 265

Figure S45.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S46.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GATA3 MUTATED 11 24 56 0 4
GATA3 WILD-TYPE 141 150 334 125 112

Figure S46.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S47.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
GATA3 MUTATED 47 16 4
GATA3 WILD-TYPE 201 201 183

Figure S47.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S48.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
GATA3 MUTATED 0 7 37 17 6 0
GATA3 WILD-TYPE 115 56 152 100 102 60

Figure S48.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.048

Table S49.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MAP3K1 MUTATED 5 1 12 1 16 1 0 3
MAP3K1 WILD-TYPE 16 37 102 96 92 72 19 36

Figure S49.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.24

Table S50.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MAP3K1 MUTATED 9 13 4 1 12
MAP3K1 WILD-TYPE 87 139 112 88 44

Figure S50.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 1

Table S51.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MAP3K1 MUTATED 41 14 7 6 2
MAP3K1 WILD-TYPE 326 212 84 235 35

Figure S51.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP3K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S52.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MAP3K1 MUTATED 3 18 5 5 7
MAP3K1 WILD-TYPE 113 163 152 78 104
'MAP3K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.88

Table S53.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MAP3K1 MUTATED 4 20 12
MAP3K1 WILD-TYPE 142 109 106

Figure S52.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MAP3K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S54.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MAP3K1 MUTATED 16 14 1 5 0
MAP3K1 WILD-TYPE 43 95 89 99 31

Figure S53.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.33

Table S55.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MAP3K1 MUTATED 3 14 24 4 21 4 0
MAP3K1 WILD-TYPE 176 121 191 152 204 44 15

Figure S54.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.095

Table S56.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MAP3K1 MUTATED 3 19 23 8 17 0
MAP3K1 WILD-TYPE 165 203 165 164 154 52

Figure S55.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.21

Table S57.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MAP3K1 MUTATED 27 37 6
MAP3K1 WILD-TYPE 243 376 268

Figure S56.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.33

Table S58.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MAP3K1 MUTATED 19 21 24 2 4
MAP3K1 WILD-TYPE 133 153 366 123 112

Figure S57.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.68

Table S59.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MAP3K1 MUTATED 26 18 3
MAP3K1 WILD-TYPE 222 199 184

Figure S58.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 1

Table S60.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MAP3K1 MUTATED 3 8 12 12 11 1
MAP3K1 WILD-TYPE 112 55 177 105 97 59

Figure S59.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RUNX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 1

Table S61.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RUNX1 MUTATED 3 1 3 0 5 2 0 4
RUNX1 WILD-TYPE 18 37 111 97 103 71 19 35

Figure S60.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RUNX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 1

Table S62.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RUNX1 MUTATED 3 10 3 0 2
RUNX1 WILD-TYPE 93 142 113 89 54
'RUNX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00508 (Fisher's exact test), Q value = 1

Table S63.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RUNX1 MUTATED 17 3 6 2 0
RUNX1 WILD-TYPE 350 223 85 239 37

Figure S61.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RUNX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S64.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RUNX1 MUTATED 2 3 4 6 4
RUNX1 WILD-TYPE 114 178 153 77 107
'RUNX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S65.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RUNX1 MUTATED 4 3 3
RUNX1 WILD-TYPE 142 126 115
'RUNX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S66.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RUNX1 MUTATED 1 4 0 4 1
RUNX1 WILD-TYPE 58 105 90 100 30
'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 1

Table S67.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RUNX1 MUTATED 1 7 10 6 3 2 0
RUNX1 WILD-TYPE 178 128 205 150 222 46 15

Figure S62.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 1

Table S68.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RUNX1 MUTATED 1 9 8 9 2 0
RUNX1 WILD-TYPE 167 213 180 163 169 52

Figure S63.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 1

Table S69.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RUNX1 MUTATED 12 15 2
RUNX1 WILD-TYPE 258 398 272

Figure S64.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S70.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RUNX1 MUTATED 8 5 13 1 2
RUNX1 WILD-TYPE 144 169 377 124 114
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S71.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RUNX1 MUTATED 7 10 3
RUNX1 WILD-TYPE 241 207 184
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S72.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RUNX1 MUTATED 1 3 6 2 6 2
RUNX1 WILD-TYPE 114 60 183 115 102 58
'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S73.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PTEN MUTATED 2 2 3 1 4 1 0 0
PTEN WILD-TYPE 19 36 111 96 104 72 19 39
'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S74.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PTEN MUTATED 3 5 3 1 1
PTEN WILD-TYPE 93 147 113 88 55
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S75.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PTEN MUTATED 14 6 6 8 1
PTEN WILD-TYPE 353 220 85 233 36
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S76.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PTEN MUTATED 6 5 9 3 6
PTEN WILD-TYPE 110 176 148 80 105
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S77.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PTEN MUTATED 3 4 3
PTEN WILD-TYPE 143 125 115
'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S78.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PTEN MUTATED 2 3 2 3 0
PTEN WILD-TYPE 57 106 88 101 31
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S79.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PTEN MUTATED 4 8 6 8 7 1 1
PTEN WILD-TYPE 175 127 209 148 218 47 14
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S80.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PTEN MUTATED 5 7 7 10 3 3
PTEN WILD-TYPE 163 215 181 162 168 49
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S81.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PTEN MUTATED 11 16 8
PTEN WILD-TYPE 259 397 266
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S82.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PTEN MUTATED 8 3 15 4 5
PTEN WILD-TYPE 144 171 375 121 111
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S83.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PTEN MUTATED 7 13 6
PTEN WILD-TYPE 241 204 181
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S84.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PTEN MUTATED 5 3 6 4 5 3
PTEN WILD-TYPE 110 60 183 113 103 57
'ARID1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S85.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ARID1A MUTATED 3 1 4 2 3 1 0 1
ARID1A WILD-TYPE 18 37 110 95 105 72 19 38
'ARID1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S86.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ARID1A MUTATED 4 5 3 2 1
ARID1A WILD-TYPE 92 147 113 87 55
'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 1

Table S87.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ARID1A MUTATED 9 11 1 3 2
ARID1A WILD-TYPE 358 215 90 238 35
'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S88.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ARID1A MUTATED 1 6 6 4 1
ARID1A WILD-TYPE 115 175 151 79 110
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ARID1A MUTATED 4 3 3
ARID1A WILD-TYPE 142 126 115
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S90.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ARID1A MUTATED 2 1 1 4 2
ARID1A WILD-TYPE 57 108 89 100 29
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S91.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ARID1A MUTATED 2 3 3 5 13 1 0
ARID1A WILD-TYPE 177 132 212 151 212 47 15
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S92.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ARID1A MUTATED 2 7 5 6 6 1
ARID1A WILD-TYPE 166 215 183 166 165 51
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S93.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ARID1A MUTATED 8 15 4
ARID1A WILD-TYPE 262 398 270
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S94.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ARID1A MUTATED 1 10 10 2 4
ARID1A WILD-TYPE 151 164 380 123 112
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S95.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ARID1A MUTATED 6 7 1
ARID1A WILD-TYPE 242 210 186
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S96.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ARID1A MUTATED 0 1 4 4 3 2
ARID1A WILD-TYPE 115 62 185 113 105 58
'CBFB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 1

Table S97.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CBFB MUTATED 1 1 0 1 6 2 0 0
CBFB WILD-TYPE 20 37 114 96 102 71 19 39
'CBFB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S98.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CBFB MUTATED 0 6 2 1 2
CBFB WILD-TYPE 96 146 114 88 54
'CBFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 1

Table S99.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CBFB MUTATED 13 4 5 1 0
CBFB WILD-TYPE 354 222 86 240 37

Figure S65.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CBFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S100.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CBFB MUTATED 0 7 4 3 1
CBFB WILD-TYPE 116 174 153 80 110
'CBFB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S101.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CBFB MUTATED 1 6 3
CBFB WILD-TYPE 145 123 115
'CBFB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 1

Table S102.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CBFB MUTATED 5 2 2 1 0
CBFB WILD-TYPE 54 107 88 103 31
'CBFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.048

Table S103.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CBFB MUTATED 1 3 17 2 0 0 0
CBFB WILD-TYPE 178 132 198 154 225 48 15

Figure S66.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CBFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.57

Table S104.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CBFB MUTATED 1 3 14 3 1 1
CBFB WILD-TYPE 167 219 174 169 170 51

Figure S67.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 1

Table S105.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CBFB MUTATED 10 11 1
CBFB WILD-TYPE 260 402 273

Figure S68.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CBFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00341 (Fisher's exact test), Q value = 1

Table S106.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CBFB MUTATED 7 1 14 0 0
CBFB WILD-TYPE 145 173 376 125 116

Figure S69.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CBFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0052 (Fisher's exact test), Q value = 1

Table S107.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CBFB MUTATED 11 4 0
CBFB WILD-TYPE 237 213 187

Figure S70.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CBFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 1

Table S108.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CBFB MUTATED 0 6 7 1 1 0
CBFB WILD-TYPE 115 57 182 116 107 60

Figure S71.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S109.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLL3 MUTATED 1 1 8 5 12 4 1 4
MLL3 WILD-TYPE 20 37 106 92 96 69 18 35
'MLL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S110.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLL3 MUTATED 6 10 6 5 9
MLL3 WILD-TYPE 90 142 110 84 47
'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S111.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MLL3 MUTATED 29 16 9 11 2
MLL3 WILD-TYPE 338 210 82 230 35
'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S112.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLL3 MUTATED 5 18 14 7 6
MLL3 WILD-TYPE 111 163 143 76 105
'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S113.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MLL3 MUTATED 10 6 9
MLL3 WILD-TYPE 136 123 109
'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S114.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MLL3 MUTATED 6 6 7 4 2
MLL3 WILD-TYPE 53 103 83 100 29
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 1

Table S115.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MLL3 MUTATED 8 9 24 14 14 0 0
MLL3 WILD-TYPE 171 126 191 142 211 48 15

Figure S72.  Get High-res Image Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S116.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MLL3 MUTATED 8 11 20 17 10 3
MLL3 WILD-TYPE 160 211 168 155 161 49
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 1

Table S117.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MLL3 MUTATED 20 35 11
MLL3 WILD-TYPE 250 378 263
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S118.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MLL3 MUTATED 11 14 31 4 6
MLL3 WILD-TYPE 141 160 359 121 110
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S119.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MLL3 MUTATED 20 14 7
MLL3 WILD-TYPE 228 203 180
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S120.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MLL3 MUTATED 3 2 17 6 8 5
MLL3 WILD-TYPE 112 61 172 111 100 55
'FOXA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S121.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FOXA1 MUTATED 0 0 3 0 1 2 0 2
FOXA1 WILD-TYPE 21 38 111 97 107 71 19 37
'FOXA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S122.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FOXA1 MUTATED 3 2 2 0 1
FOXA1 WILD-TYPE 93 150 114 89 55
'FOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 1

Table S123.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FOXA1 MUTATED 14 5 3 1 0
FOXA1 WILD-TYPE 353 221 88 240 37
'FOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 1

Table S124.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FOXA1 MUTATED 0 5 9 1 2
FOXA1 WILD-TYPE 116 176 148 82 109

Figure S73.  Get High-res Image Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FOXA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S125.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FOXA1 MUTATED 2 3 2
FOXA1 WILD-TYPE 144 126 116
'FOXA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S126.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FOXA1 MUTATED 1 2 1 3 0
FOXA1 WILD-TYPE 58 107 89 101 31
'FOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 1

Table S127.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FOXA1 MUTATED 1 2 8 4 4 4 0
FOXA1 WILD-TYPE 178 133 207 152 221 44 15
'FOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S128.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FOXA1 MUTATED 1 10 4 5 3 0
FOXA1 WILD-TYPE 167 212 184 167 168 52
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S129.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FOXA1 MUTATED 10 10 3
FOXA1 WILD-TYPE 260 403 271
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S130.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FOXA1 MUTATED 5 5 10 1 2
FOXA1 WILD-TYPE 147 169 380 124 114
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 1

Table S131.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
FOXA1 MUTATED 9 7 1
FOXA1 WILD-TYPE 239 210 186
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S132.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
FOXA1 MUTATED 1 3 7 2 3 1
FOXA1 WILD-TYPE 114 60 182 115 105 59
'MAP2K4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 1

Table S133.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MAP2K4 MUTATED 0 3 3 0 8 2 1 2
MAP2K4 WILD-TYPE 21 35 111 97 100 71 18 37
'MAP2K4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00423 (Fisher's exact test), Q value = 1

Table S134.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MAP2K4 MUTATED 2 9 2 0 6
MAP2K4 WILD-TYPE 94 143 114 89 50

Figure S74.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 1

Table S135.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MAP2K4 MUTATED 13 7 7 3 2
MAP2K4 WILD-TYPE 354 219 84 238 35

Figure S75.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP2K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 1

Table S136.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MAP2K4 MUTATED 1 13 7 2 2
MAP2K4 WILD-TYPE 115 168 150 81 109

Figure S76.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP2K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 1

Table S137.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MAP2K4 MUTATED 0 5 8
MAP2K4 WILD-TYPE 146 124 110

Figure S77.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MAP2K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S138.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MAP2K4 MUTATED 2 7 1 3 0
MAP2K4 WILD-TYPE 57 102 89 101 31
'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0058 (Fisher's exact test), Q value = 1

Table S139.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MAP2K4 MUTATED 0 3 12 3 12 1 1
MAP2K4 WILD-TYPE 179 132 203 153 213 47 14

Figure S78.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00791 (Fisher's exact test), Q value = 1

Table S140.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MAP2K4 MUTATED 0 10 8 4 10 0
MAP2K4 WILD-TYPE 168 212 180 168 161 52

Figure S79.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.73

Table S141.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MAP2K4 MUTATED 6 24 2
MAP2K4 WILD-TYPE 264 389 272

Figure S80.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.85

Table S142.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MAP2K4 MUTATED 1 12 18 0 1
MAP2K4 WILD-TYPE 151 162 372 125 115

Figure S81.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.048

Table S143.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MAP2K4 MUTATED 17 3 0
MAP2K4 WILD-TYPE 231 214 187

Figure S82.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0016 (Fisher's exact test), Q value = 1

Table S144.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MAP2K4 MUTATED 0 1 14 4 1 0
MAP2K4 WILD-TYPE 115 62 175 113 107 60

Figure S83.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S145.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RBMX MUTATED 0 0 0 3 2 0 0 1
RBMX WILD-TYPE 21 38 114 94 106 73 19 38
'RBMX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S146.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RBMX MUTATED 0 3 0 3 0
RBMX WILD-TYPE 96 149 116 86 56
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 1

Table S147.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RBMX MUTATED 6 0 1 6 1
RBMX WILD-TYPE 361 226 90 235 36
'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S148.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RBMX MUTATED 3 0 4 2 2
RBMX WILD-TYPE 113 181 153 81 109
'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S149.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RBMX MUTATED 2 2 0
RBMX WILD-TYPE 144 127 118
'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S150.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RBMX MUTATED 1 1 2 0 0
RBMX WILD-TYPE 58 108 88 104 31
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S151.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RBMX MUTATED 5 2 3 2 0 1 1
RBMX WILD-TYPE 174 133 212 154 225 47 14
'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S152.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RBMX MUTATED 5 4 2 2 0 1
RBMX WILD-TYPE 163 218 186 170 171 51
'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S153.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RBMX MUTATED 3 5 6
RBMX WILD-TYPE 267 408 268
'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S154.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RBMX MUTATED 2 1 5 3 3
RBMX WILD-TYPE 150 173 385 122 113
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S155.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RBMX MUTATED 2 2 5
RBMX WILD-TYPE 246 215 182
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S156.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RBMX MUTATED 3 1 1 1 2 1
RBMX WILD-TYPE 112 62 188 116 106 59
'TBX3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S157.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TBX3 MUTATED 0 1 3 2 7 1 0 2
TBX3 WILD-TYPE 21 37 111 95 101 72 19 37
'TBX3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S158.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TBX3 MUTATED 3 6 3 1 3
TBX3 WILD-TYPE 93 146 113 88 53
'TBX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S159.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TBX3 MUTATED 13 6 4 3 1
TBX3 WILD-TYPE 354 220 87 238 36
'TBX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S160.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TBX3 MUTATED 1 7 2 3 3
TBX3 WILD-TYPE 115 174 155 80 108
'TBX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 1

Table S161.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TBX3 MUTATED 1 3 6
TBX3 WILD-TYPE 145 126 112
'TBX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S162.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TBX3 MUTATED 2 3 2 3 0
TBX3 WILD-TYPE 57 106 88 101 31
'TBX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S163.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TBX3 MUTATED 2 8 9 2 5 1 0
TBX3 WILD-TYPE 177 127 206 154 220 47 15
'TBX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S164.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TBX3 MUTATED 2 10 7 4 3 1
TBX3 WILD-TYPE 166 212 181 168 168 51
'TBX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 1

Table S165.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TBX3 MUTATED 10 14 3
TBX3 WILD-TYPE 260 399 271
'TBX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 1

Table S166.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TBX3 MUTATED 8 8 8 1 2
TBX3 WILD-TYPE 144 166 382 124 114
'TBX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S167.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TBX3 MUTATED 6 7 2
TBX3 WILD-TYPE 242 210 185
'TBX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 1

Table S168.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TBX3 MUTATED 1 4 2 1 6 1
TBX3 WILD-TYPE 114 59 187 116 102 59

Figure S84.  Get High-res Image Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'THEM5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S169.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
THEM5 MUTATED 1 0 1 0 3 0 0 0
THEM5 WILD-TYPE 20 38 113 97 105 73 19 39
'THEM5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S170.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
THEM5 MUTATED 1 2 1 0 1
THEM5 WILD-TYPE 95 150 115 89 55
'THEM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S171.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
THEM5 MUTATED 2 3 3 3 0
THEM5 WILD-TYPE 365 223 88 238 37
'THEM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S172.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
THEM5 MUTATED 0 1 3 1 3
THEM5 WILD-TYPE 116 180 154 82 108
'THEM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S173.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
THEM5 MUTATED 1 3 0
THEM5 WILD-TYPE 145 126 118
'THEM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S174.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
THEM5 MUTATED 2 0 0 2 0
THEM5 WILD-TYPE 57 109 90 102 31
'THEM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S175.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
THEM5 MUTATED 1 1 3 1 3 1 0
THEM5 WILD-TYPE 178 134 212 155 222 47 15
'THEM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.994 (Fisher's exact test), Q value = 1

Table S176.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
THEM5 MUTATED 1 3 2 2 2 0
THEM5 WILD-TYPE 167 219 186 170 169 52
'THEM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S177.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
THEM5 MUTATED 4 4 2
THEM5 WILD-TYPE 266 409 272
'THEM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S178.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
THEM5 MUTATED 1 2 6 1 0
THEM5 WILD-TYPE 151 172 384 124 116
'THEM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S179.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
THEM5 MUTATED 3 4 2
THEM5 WILD-TYPE 245 213 185
'THEM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S180.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
THEM5 MUTATED 1 0 2 4 2 0
THEM5 WILD-TYPE 114 63 187 113 106 60
'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S181.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RB1 MUTATED 0 0 2 4 2 2 0 0
RB1 WILD-TYPE 21 38 112 93 106 71 19 39
'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S182.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RB1 MUTATED 2 1 4 3 0
RB1 WILD-TYPE 94 151 112 86 56
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S183.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RB1 MUTATED 3 4 4 8 0
RB1 WILD-TYPE 364 222 87 233 37
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S184.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RB1 MUTATED 5 2 2 2 0
RB1 WILD-TYPE 111 179 155 81 111
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S185.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RB1 MUTATED 5 3 1
RB1 WILD-TYPE 141 126 117
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S186.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RB1 MUTATED 1 2 4 2 0
RB1 WILD-TYPE 58 107 86 102 31
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S187.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RB1 MUTATED 7 0 4 5 3 0 0
RB1 WILD-TYPE 172 135 211 151 222 48 15
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 1

Table S188.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RB1 MUTATED 6 0 2 6 4 1
RB1 WILD-TYPE 162 222 186 166 167 51

Figure S85.  Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S189.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RB1 MUTATED 1 7 8
RB1 WILD-TYPE 269 406 266
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 1

Table S190.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RB1 MUTATED 0 2 6 2 6
RB1 WILD-TYPE 152 172 384 123 110

Figure S86.  Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 1

Table S191.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RB1 MUTATED 5 0 7
RB1 WILD-TYPE 243 217 180

Figure S87.  Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S192.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RB1 MUTATED 4 1 2 2 0 3
RB1 WILD-TYPE 111 62 187 115 108 57
'NF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S193.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NF1 MUTATED 1 0 2 3 4 2 0 3
NF1 WILD-TYPE 20 38 112 94 104 71 19 36
'NF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S194.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NF1 MUTATED 2 4 3 3 3
NF1 WILD-TYPE 94 148 113 86 53
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S195.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
NF1 MUTATED 13 3 3 7 0
NF1 WILD-TYPE 354 223 88 234 37
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S196.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NF1 MUTATED 3 2 7 1 6
NF1 WILD-TYPE 113 179 150 82 105
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S197.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NF1 MUTATED 4 5 4
NF1 WILD-TYPE 142 124 114
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S198.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NF1 MUTATED 0 6 2 5 0
NF1 WILD-TYPE 59 103 88 99 31
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S199.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
NF1 MUTATED 6 2 4 8 3 3 1
NF1 WILD-TYPE 173 133 211 148 222 45 14
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S200.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
NF1 MUTATED 6 7 1 9 3 1
NF1 WILD-TYPE 162 215 187 163 168 51
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S201.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
NF1 MUTATED 8 12 6
NF1 WILD-TYPE 262 401 268
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S202.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
NF1 MUTATED 4 4 11 5 2
NF1 WILD-TYPE 148 170 379 120 114
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S203.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
NF1 MUTATED 9 4 4
NF1 WILD-TYPE 239 213 183
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S204.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
NF1 MUTATED 3 1 7 1 3 2
NF1 WILD-TYPE 112 62 182 116 105 58
'ACTL6B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S205.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACTL6B MUTATED 1 0 1 2 0 2 0 0
ACTL6B WILD-TYPE 20 38 113 95 108 71 19 39
'ACTL6B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S206.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACTL6B MUTATED 1 0 2 2 1
ACTL6B WILD-TYPE 95 152 114 87 55
'ACTL6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 1

Table S207.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ACTL6B MUTATED 2 1 0 5 2
ACTL6B WILD-TYPE 365 225 91 236 35

Figure S88.  Get High-res Image Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTL6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S208.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACTL6B MUTATED 3 3 1 0 0
ACTL6B WILD-TYPE 113 178 156 83 111
'ACTL6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S209.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ACTL6B MUTATED 2 1 2
ACTL6B WILD-TYPE 144 128 116
'ACTL6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S210.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ACTL6B MUTATED 0 3 2 0 0
ACTL6B WILD-TYPE 59 106 88 104 31
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S211.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ACTL6B MUTATED 3 0 2 2 2 1 0
ACTL6B WILD-TYPE 176 135 213 154 223 47 15
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S212.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ACTL6B MUTATED 3 1 1 2 2 1
ACTL6B WILD-TYPE 165 221 187 170 169 51
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S213.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ACTL6B MUTATED 2 6 2
ACTL6B WILD-TYPE 268 407 272
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S214.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ACTL6B MUTATED 1 3 3 2 1
ACTL6B WILD-TYPE 151 171 387 123 115
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S215.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ACTL6B MUTATED 2 1 2
ACTL6B WILD-TYPE 246 216 185
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S216.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ACTL6B MUTATED 1 0 2 1 1 0
ACTL6B WILD-TYPE 114 63 187 116 107 60
'SPEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S217.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SPEN MUTATED 0 1 4 2 8 3 1 1
SPEN WILD-TYPE 21 37 110 95 100 70 18 38
'SPEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S218.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SPEN MUTATED 4 8 5 2 1
SPEN WILD-TYPE 92 144 111 87 55
'SPEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S219.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SPEN MUTATED 15 5 4 5 1
SPEN WILD-TYPE 352 221 87 236 36
'SPEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S220.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SPEN MUTATED 1 6 9 3 5
SPEN WILD-TYPE 115 175 148 80 106
'SPEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S221.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SPEN MUTATED 6 4 4
SPEN WILD-TYPE 140 125 114
'SPEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S222.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SPEN MUTATED 1 5 2 3 3
SPEN WILD-TYPE 58 104 88 101 28
'SPEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S223.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SPEN MUTATED 2 4 10 5 7 2 2
SPEN WILD-TYPE 177 131 205 151 218 46 13
'SPEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S224.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SPEN MUTATED 2 7 7 11 4 1
SPEN WILD-TYPE 166 215 181 161 167 51
'SPEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 1

Table S225.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SPEN MUTATED 10 19 3
SPEN WILD-TYPE 260 394 271

Figure S89.  Get High-res Image Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SPEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 1

Table S226.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SPEN MUTATED 3 7 20 2 0
SPEN WILD-TYPE 149 167 370 123 116

Figure S90.  Get High-res Image Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S227.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SPEN MUTATED 5 7 2
SPEN WILD-TYPE 243 210 185
'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0653 (Fisher's exact test), Q value = 1

Table S228.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SPEN MUTATED 0 1 7 1 5 0
SPEN WILD-TYPE 115 62 182 116 103 60
'CDKN1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S229.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDKN1B MUTATED 0 0 1 0 3 1 0 1
CDKN1B WILD-TYPE 21 38 113 97 105 72 19 38
'CDKN1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S230.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDKN1B MUTATED 1 3 1 0 1
CDKN1B WILD-TYPE 95 149 115 89 55
'CDKN1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S231.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CDKN1B MUTATED 5 1 3 1 0
CDKN1B WILD-TYPE 362 225 88 240 37
'CDKN1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S232.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDKN1B MUTATED 0 3 0 1 1
CDKN1B WILD-TYPE 116 178 157 82 110
'CDKN1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S233.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDKN1B MUTATED 1 2 2
CDKN1B WILD-TYPE 145 127 116
'CDKN1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S234.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDKN1B MUTATED 2 2 0 1 0
CDKN1B WILD-TYPE 57 107 90 103 31
'CDKN1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 1

Table S235.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CDKN1B MUTATED 0 1 5 2 1 0 1
CDKN1B WILD-TYPE 179 134 210 154 224 48 14
'CDKN1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S236.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CDKN1B MUTATED 0 4 4 2 0 0
CDKN1B WILD-TYPE 168 218 184 170 171 52
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 1

Table S237.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CDKN1B MUTATED 6 4 0
CDKN1B WILD-TYPE 264 409 274

Figure S91.  Get High-res Image Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDKN1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S238.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CDKN1B MUTATED 2 2 6 0 0
CDKN1B WILD-TYPE 150 172 384 125 116
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S239.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CDKN1B MUTATED 3 3 0
CDKN1B WILD-TYPE 245 214 187
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S240.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CDKN1B MUTATED 0 1 3 0 2 0
CDKN1B WILD-TYPE 115 62 186 117 106 60
'NCOR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S241.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NCOR1 MUTATED 0 2 4 3 7 3 0 0
NCOR1 WILD-TYPE 21 36 110 94 101 70 19 39
'NCOR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S242.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NCOR1 MUTATED 3 6 4 3 3
NCOR1 WILD-TYPE 93 146 112 86 53
'NCOR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S243.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
NCOR1 MUTATED 16 10 4 8 1
NCOR1 WILD-TYPE 351 216 87 233 36
'NCOR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S244.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NCOR1 MUTATED 4 7 9 6 4
NCOR1 WILD-TYPE 112 174 148 77 107
'NCOR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S245.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NCOR1 MUTATED 5 2 5
NCOR1 WILD-TYPE 141 127 113
'NCOR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S246.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NCOR1 MUTATED 1 5 2 2 2
NCOR1 WILD-TYPE 58 104 88 102 29
'NCOR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S247.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
NCOR1 MUTATED 6 6 10 10 7 1 1
NCOR1 WILD-TYPE 173 129 205 146 218 47 14
'NCOR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S248.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
NCOR1 MUTATED 6 7 8 14 4 2
NCOR1 WILD-TYPE 162 215 180 158 167 50
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S249.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
NCOR1 MUTATED 12 19 10
NCOR1 WILD-TYPE 258 394 264
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S250.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
NCOR1 MUTATED 7 3 22 5 4
NCOR1 WILD-TYPE 145 171 368 120 112
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S251.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
NCOR1 MUTATED 9 8 7
NCOR1 WILD-TYPE 239 209 180
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S252.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
NCOR1 MUTATED 3 1 10 1 7 2
NCOR1 WILD-TYPE 112 62 179 116 101 58
'SF3B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S253.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SF3B1 MUTATED 0 0 1 1 3 2 0 1
SF3B1 WILD-TYPE 21 38 113 96 105 71 19 38
'SF3B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S254.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SF3B1 MUTATED 1 4 2 1 0
SF3B1 WILD-TYPE 95 148 114 88 56
'SF3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S255.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SF3B1 MUTATED 6 7 1 2 0
SF3B1 WILD-TYPE 361 219 90 239 37
'SF3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 1

Table S256.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SF3B1 MUTATED 0 7 5 2 0
SF3B1 WILD-TYPE 116 174 152 81 111

Figure S92.  Get High-res Image Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SF3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S257.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SF3B1 MUTATED 1 1 3
SF3B1 WILD-TYPE 145 128 115
'SF3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S258.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SF3B1 MUTATED 0 4 1 0 0
SF3B1 WILD-TYPE 59 105 89 104 31
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S259.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SF3B1 MUTATED 1 3 6 3 2 1 0
SF3B1 WILD-TYPE 178 132 209 153 223 47 15
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S260.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SF3B1 MUTATED 1 5 4 4 2 0
SF3B1 WILD-TYPE 167 217 184 168 169 52
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 1

Table S261.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SF3B1 MUTATED 8 7 1
SF3B1 WILD-TYPE 262 406 273

Figure S93.  Get High-res Image Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S262.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SF3B1 MUTATED 3 5 5 1 2
SF3B1 WILD-TYPE 149 169 385 124 114
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S263.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SF3B1 MUTATED 4 3 1
SF3B1 WILD-TYPE 244 214 186
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S264.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SF3B1 MUTATED 0 1 2 4 1 0
SF3B1 WILD-TYPE 115 62 187 113 107 60
'ZFP36L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S265.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZFP36L1 MUTATED 1 0 1 0 1 1 0 1
ZFP36L1 WILD-TYPE 20 38 113 97 107 72 19 38
'ZFP36L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S266.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZFP36L1 MUTATED 1 2 2 0 0
ZFP36L1 WILD-TYPE 95 150 114 89 56
'ZFP36L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00632 (Fisher's exact test), Q value = 1

Table S267.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZFP36L1 MUTATED 1 4 3 0 1
ZFP36L1 WILD-TYPE 366 222 88 241 36

Figure S94.  Get High-res Image Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFP36L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S268.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZFP36L1 MUTATED 1 0 4 0 0
ZFP36L1 WILD-TYPE 115 181 153 83 111
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 1

Table S269.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZFP36L1 MUTATED 0 0 3
ZFP36L1 WILD-TYPE 146 129 115

Figure S95.  Get High-res Image Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZFP36L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S270.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZFP36L1 MUTATED 0 3 0 0 0
ZFP36L1 WILD-TYPE 59 106 90 104 31
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S271.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZFP36L1 MUTATED 1 0 1 2 5 0 0
ZFP36L1 WILD-TYPE 178 135 214 154 220 48 15
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S272.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZFP36L1 MUTATED 1 1 0 2 4 1
ZFP36L1 WILD-TYPE 167 221 188 170 167 51
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S273.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZFP36L1 MUTATED 3 5 1
ZFP36L1 WILD-TYPE 267 408 273
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S274.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZFP36L1 MUTATED 0 2 4 1 2
ZFP36L1 WILD-TYPE 152 172 386 124 114
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S275.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ZFP36L1 MUTATED 2 2 1
ZFP36L1 WILD-TYPE 246 215 186
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S276.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ZFP36L1 MUTATED 1 0 2 1 0 1
ZFP36L1 WILD-TYPE 114 63 187 116 108 59
'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S277.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KRAS MUTATED 0 0 0 1 2 0 0 1
KRAS WILD-TYPE 21 38 114 96 106 73 19 38
'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S278.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KRAS MUTATED 0 2 1 0 1
KRAS WILD-TYPE 96 150 115 89 55
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S279.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
KRAS MUTATED 5 0 0 1 0
KRAS WILD-TYPE 362 226 91 240 37
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S280.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KRAS MUTATED 0 2 0 0 2
KRAS WILD-TYPE 116 179 157 83 109
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S281.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KRAS MUTATED 0 1 2
KRAS WILD-TYPE 146 128 116
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S282.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KRAS MUTATED 1 1 1 0 0
KRAS WILD-TYPE 58 108 89 104 31
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S283.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
KRAS MUTATED 0 1 3 2 0 0 0
KRAS WILD-TYPE 179 134 212 154 225 48 15
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S284.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
KRAS MUTATED 0 2 2 1 0 1
KRAS WILD-TYPE 168 220 186 171 171 51
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S285.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
KRAS MUTATED 1 4 1
KRAS WILD-TYPE 269 409 273
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S286.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
KRAS MUTATED 1 0 4 0 1
KRAS WILD-TYPE 151 174 386 125 115
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S287.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
KRAS MUTATED 3 1 1
KRAS WILD-TYPE 245 216 186
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S288.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
KRAS MUTATED 0 2 2 0 0 1
KRAS WILD-TYPE 115 61 187 117 108 59
'TCP11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S289.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TCP11 MUTATED 0 1 2 1 1 0 0 1
TCP11 WILD-TYPE 21 37 112 96 107 73 19 38
'TCP11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S290.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TCP11 MUTATED 2 3 0 1 0
TCP11 WILD-TYPE 94 149 116 88 56
'TCP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S291.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TCP11 MUTATED 3 1 0 1 1
TCP11 WILD-TYPE 364 225 91 240 36
'TCP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S292.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TCP11 MUTATED 2 1 2
TCP11 WILD-TYPE 144 128 116
'TCP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S293.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TCP11 MUTATED 0 2 1 2 0
TCP11 WILD-TYPE 59 107 89 102 31
'TCP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S294.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TCP11 MUTATED 1 2 1 0 2 0 0
TCP11 WILD-TYPE 178 133 214 156 223 48 15
'TCP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S295.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TCP11 MUTATED 1 3 1 1 0 0
TCP11 WILD-TYPE 167 219 187 171 171 52
'TCP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S296.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TCP11 MUTATED 2 3 1
TCP11 WILD-TYPE 268 410 273
'TCP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S297.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TCP11 MUTATED 2 1 2 1 0
TCP11 WILD-TYPE 150 173 388 124 116
'AQP12A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S298.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
AQP12A MUTATED 0 1 1 0 1 0 0 0
AQP12A WILD-TYPE 21 37 113 97 107 73 19 39
'AQP12A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S299.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
AQP12A MUTATED 1 2 0 0 0
AQP12A WILD-TYPE 95 150 116 89 56
'AQP12A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S300.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
AQP12A MUTATED 1 4 0 1 0
AQP12A WILD-TYPE 366 222 91 240 37
'AQP12A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S301.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
AQP12A MUTATED 1 0 3 0 0
AQP12A WILD-TYPE 115 181 154 83 111
'AQP12A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S302.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
AQP12A MUTATED 0 1 2
AQP12A WILD-TYPE 146 128 116
'AQP12A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S303.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
AQP12A MUTATED 0 0 0 3 0
AQP12A WILD-TYPE 59 109 90 101 31
'AQP12A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S304.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
AQP12A MUTATED 0 1 2 2 1 0 0
AQP12A WILD-TYPE 179 134 213 154 224 48 15
'AQP12A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S305.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
AQP12A MUTATED 1 1 1 1 2 0
AQP12A WILD-TYPE 167 221 187 171 169 52
'AQP12A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S306.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
AQP12A MUTATED 1 3 2
AQP12A WILD-TYPE 269 410 272
'AQP12A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S307.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
AQP12A MUTATED 0 3 2 1 0
AQP12A WILD-TYPE 152 171 388 124 116
'AQP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S308.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
AQP12A MUTATED 2 1 1
AQP12A WILD-TYPE 246 216 186
'AQP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S309.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
AQP12A MUTATED 1 0 2 0 1 0
AQP12A WILD-TYPE 114 63 187 117 107 60
'DLG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S310.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
DLG1 MUTATED 0 2 1 0 2 2 0 0
DLG1 WILD-TYPE 21 36 113 97 106 71 19 39
'DLG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S311.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
DLG1 MUTATED 0 4 2 0 1
DLG1 WILD-TYPE 96 148 114 89 55
'DLG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S312.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
DLG1 MUTATED 6 1 1 5 0
DLG1 WILD-TYPE 361 225 90 236 37
'DLG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S313.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
DLG1 MUTATED 3 1 1 0 4
DLG1 WILD-TYPE 113 180 156 83 107
'DLG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S314.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
DLG1 MUTATED 2 3 2
DLG1 WILD-TYPE 144 126 116
'DLG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S315.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
DLG1 MUTATED 2 2 0 1 2
DLG1 WILD-TYPE 57 107 90 103 29
'DLG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S316.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
DLG1 MUTATED 2 2 1 5 1 1 1
DLG1 WILD-TYPE 177 133 214 151 224 47 14
'DLG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S317.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
DLG1 MUTATED 1 4 2 4 0 2
DLG1 WILD-TYPE 167 218 186 168 171 50
'DLG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S318.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
DLG1 MUTATED 3 3 6
DLG1 WILD-TYPE 267 410 268
'DLG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S319.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
DLG1 MUTATED 0 1 6 0 5
DLG1 WILD-TYPE 152 173 384 125 111

Figure S96.  Get High-res Image Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DLG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S320.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
DLG1 MUTATED 2 3 3
DLG1 WILD-TYPE 246 214 184
'DLG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S321.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
DLG1 MUTATED 1 1 3 0 1 2
DLG1 WILD-TYPE 114 62 186 117 107 58
'MYB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S322.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MYB MUTATED 0 0 2 2 4 0 0 1
MYB WILD-TYPE 21 38 112 95 104 73 19 38
'MYB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 1

Table S323.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MYB MUTATED 0 2 1 2 4
MYB WILD-TYPE 96 150 115 87 52

Figure S97.  Get High-res Image Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S324.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MYB MUTATED 6 1 3 2 0
MYB WILD-TYPE 361 225 88 239 37
'MYB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S325.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MYB MUTATED 2 1 1 1 0
MYB WILD-TYPE 114 180 156 82 111
'MYB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S326.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MYB MUTATED 2 2 1
MYB WILD-TYPE 144 127 117
'MYB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S327.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MYB MUTATED 2 1 1 1 0
MYB WILD-TYPE 57 108 89 103 31
'MYB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S328.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MYB MUTATED 3 1 3 1 3 1 0
MYB WILD-TYPE 176 134 212 155 222 47 15
'MYB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S329.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MYB MUTATED 3 2 6 1 0 0
MYB WILD-TYPE 165 220 182 171 171 52
'MYB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S330.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MYB MUTATED 3 7 2
MYB WILD-TYPE 267 406 272
'MYB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S331.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MYB MUTATED 1 4 5 1 1
MYB WILD-TYPE 151 170 385 124 115
'MYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 1

Table S332.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MYB MUTATED 5 0 1
MYB WILD-TYPE 243 217 186
'MYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S333.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MYB MUTATED 2 1 2 1 0 0
MYB WILD-TYPE 113 62 187 116 108 60
'RPGR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S334.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RPGR MUTATED 0 1 3 3 2 2 1 1
RPGR WILD-TYPE 21 37 111 94 106 71 18 38
'RPGR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S335.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RPGR MUTATED 3 5 2 3 0
RPGR WILD-TYPE 93 147 114 86 56
'RPGR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S336.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RPGR MUTATED 6 5 2 4 0
RPGR WILD-TYPE 361 221 89 237 37
'RPGR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S337.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RPGR MUTATED 2 2 5 1 4
RPGR WILD-TYPE 114 179 152 82 107
'RPGR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S338.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RPGR MUTATED 5 4 2
RPGR WILD-TYPE 141 125 116
'RPGR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S339.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RPGR MUTATED 0 2 3 6 0
RPGR WILD-TYPE 59 107 87 98 31
'RPGR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S340.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RPGR MUTATED 4 1 4 4 5 0 1
RPGR WILD-TYPE 175 134 211 152 220 48 14
'RPGR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S341.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RPGR MUTATED 4 4 1 5 4 1
RPGR WILD-TYPE 164 218 187 167 167 51
'RPGR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S342.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RPGR MUTATED 3 9 6
RPGR WILD-TYPE 267 404 268
'RPGR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S343.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RPGR MUTATED 2 3 9 0 4
RPGR WILD-TYPE 150 171 381 125 112
'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S344.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RPGR MUTATED 4 2 3
RPGR WILD-TYPE 244 215 184
'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S345.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RPGR MUTATED 2 0 4 1 1 1
RPGR WILD-TYPE 113 63 185 116 107 59
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S346.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TBL1XR1 MUTATED 1 0 1 0 5 1 0 0
TBL1XR1 WILD-TYPE 20 38 113 97 103 72 19 39
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 1

Table S347.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TBL1XR1 MUTATED 0 3 2 0 3
TBL1XR1 WILD-TYPE 96 149 114 89 53
'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 1

Table S348.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TBL1XR1 MUTATED 6 1 3 0 0
TBL1XR1 WILD-TYPE 361 225 88 241 37
'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S349.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TBL1XR1 MUTATED 0 1 1 0 1
TBL1XR1 WILD-TYPE 116 180 156 83 110
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S350.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TBL1XR1 MUTATED 2 4 1
TBL1XR1 WILD-TYPE 144 125 117
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S351.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TBL1XR1 MUTATED 3 2 0 1 1
TBL1XR1 WILD-TYPE 56 107 90 103 30
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 1

Table S352.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TBL1XR1 MUTATED 0 2 6 2 0 0 0
TBL1XR1 WILD-TYPE 179 133 209 154 225 48 15
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S353.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TBL1XR1 MUTATED 0 3 6 1 0 0
TBL1XR1 WILD-TYPE 168 219 182 171 171 52

Figure S98.  Get High-res Image Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S354.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TBL1XR1 MUTATED 2 7 1
TBL1XR1 WILD-TYPE 268 406 273
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S355.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TBL1XR1 MUTATED 2 1 7 0 0
TBL1XR1 WILD-TYPE 150 173 383 125 116
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S356.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TBL1XR1 MUTATED 4 2 1
TBL1XR1 WILD-TYPE 244 215 186
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S357.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TBL1XR1 MUTATED 0 1 5 0 1 0
TBL1XR1 WILD-TYPE 115 62 184 117 107 60
'KDM6A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S358.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KDM6A MUTATED 0 1 1 2 3 0 0 1
KDM6A WILD-TYPE 21 37 113 95 105 73 19 38
'KDM6A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S359.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KDM6A MUTATED 2 4 0 2 0
KDM6A WILD-TYPE 94 148 116 87 56
'KDM6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S360.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
KDM6A MUTATED 5 3 4 3 1
KDM6A WILD-TYPE 362 223 87 238 36
'KDM6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S361.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KDM6A MUTATED 2 3 3 2 0
KDM6A WILD-TYPE 114 178 154 81 111
'KDM6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S362.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KDM6A MUTATED 4 2 1
KDM6A WILD-TYPE 142 127 117
'KDM6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S363.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KDM6A MUTATED 1 1 2 3 0
KDM6A WILD-TYPE 58 108 88 101 31
'KDM6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S364.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
KDM6A MUTATED 5 3 1 2 4 1 0
KDM6A WILD-TYPE 174 132 214 154 221 47 15
'KDM6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S365.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
KDM6A MUTATED 5 4 1 4 2 0
KDM6A WILD-TYPE 163 218 187 168 169 52
'KDM6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S366.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
KDM6A MUTATED 5 6 5
KDM6A WILD-TYPE 265 407 269
'KDM6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S367.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
KDM6A MUTATED 1 5 4 4 2
KDM6A WILD-TYPE 151 169 386 121 114
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S368.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
KDM6A MUTATED 6 1 5
KDM6A WILD-TYPE 242 216 182
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S369.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
KDM6A MUTATED 5 1 5 0 1 0
KDM6A WILD-TYPE 110 62 184 117 107 60
'MYH9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S370.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MYH9 MUTATED 0 1 0 2 2 1 1 1
MYH9 WILD-TYPE 21 37 114 95 106 72 18 38
'MYH9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S371.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MYH9 MUTATED 0 4 3 1 0
MYH9 WILD-TYPE 96 148 113 88 56
'MYH9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S372.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MYH9 MUTATED 11 3 0 2 0
MYH9 WILD-TYPE 356 223 91 239 37
'MYH9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S373.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MYH9 MUTATED 2 3 6 1 1
MYH9 WILD-TYPE 114 178 151 82 110
'MYH9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S374.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MYH9 MUTATED 4 2 2
MYH9 WILD-TYPE 142 127 116
'MYH9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 1

Table S375.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MYH9 MUTATED 1 3 1 0 3
MYH9 WILD-TYPE 58 106 89 104 28

Figure S99.  Get High-res Image Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MYH9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S376.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MYH9 MUTATED 3 3 5 5 1 1 0
MYH9 WILD-TYPE 176 132 210 151 224 47 15
'MYH9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S377.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MYH9 MUTATED 3 5 4 3 1 2
MYH9 WILD-TYPE 165 217 184 169 170 50
'MYH9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S378.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MYH9 MUTATED 6 8 4
MYH9 WILD-TYPE 264 405 270
'MYH9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S379.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MYH9 MUTATED 3 4 7 3 1
MYH9 WILD-TYPE 149 170 383 122 115
'MYH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S380.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MYH9 MUTATED 4 6 3
MYH9 WILD-TYPE 244 211 184
'MYH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S381.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MYH9 MUTATED 2 0 3 1 4 3
MYH9 WILD-TYPE 113 63 186 116 104 57
'HLA-C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S382.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HLA-C MUTATED 0 1 0 0 0 1 0 1
HLA-C WILD-TYPE 21 37 114 97 108 72 19 38
'HLA-C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S383.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HLA-C MUTATED 0 2 1 0 0
HLA-C WILD-TYPE 96 150 115 89 56
'HLA-C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S384.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
HLA-C MUTATED 3 2 0 4 0
HLA-C WILD-TYPE 364 224 91 237 37
'HLA-C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S385.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HLA-C MUTATED 4 2 1 0 1
HLA-C WILD-TYPE 112 179 156 83 110
'HLA-C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S386.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HLA-C MUTATED 1 0 2
HLA-C WILD-TYPE 145 129 116
'HLA-C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S387.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HLA-C MUTATED 0 1 0 2 0
HLA-C WILD-TYPE 59 108 90 102 31
'HLA-C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S388.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
HLA-C MUTATED 4 1 3 1 0 0 0
HLA-C WILD-TYPE 175 134 212 155 225 48 15
'HLA-C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S389.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
HLA-C MUTATED 4 2 2 1 0 0
HLA-C WILD-TYPE 164 220 186 171 171 52
'HLA-C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S390.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
HLA-C MUTATED 2 2 5
HLA-C WILD-TYPE 268 411 269
'HLA-C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00634 (Fisher's exact test), Q value = 1

Table S391.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
HLA-C MUTATED 1 3 0 4 1
HLA-C WILD-TYPE 151 171 390 121 115

Figure S100.  Get High-res Image Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S392.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
HLA-C MUTATED 1 1 4
HLA-C WILD-TYPE 247 216 183
'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S393.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
HLA-C MUTATED 4 0 1 0 1 0
HLA-C WILD-TYPE 111 63 188 117 107 60
'RAB42 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S394.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RAB42 MUTATED 0 0 0 3 1 0 0 0
RAB42 WILD-TYPE 21 38 114 94 107 73 19 39
'RAB42 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0698 (Fisher's exact test), Q value = 1

Table S395.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RAB42 MUTATED 0 1 0 3 0
RAB42 WILD-TYPE 96 151 116 86 56
'RAB42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S396.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RAB42 MUTATED 1 0 0 3 0
RAB42 WILD-TYPE 366 226 91 238 37
'RAB42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S397.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RAB42 MUTATED 1 0 2
RAB42 WILD-TYPE 145 129 116
'RAB42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S398.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RAB42 MUTATED 0 1 2 0 0
RAB42 WILD-TYPE 59 108 88 104 31
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S399.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RAB42 MUTATED 3 0 1 0 0 0 0
RAB42 WILD-TYPE 176 135 214 156 225 48 15
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S400.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RAB42 MUTATED 3 1 0 0 0 0
RAB42 WILD-TYPE 165 221 188 172 171 52
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S401.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RAB42 MUTATED 0 1 3
RAB42 WILD-TYPE 270 412 271
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S402.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RAB42 MUTATED 0 1 0 3 0
RAB42 WILD-TYPE 152 173 390 122 116

Figure S101.  Get High-res Image Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S403.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FGFR2 MUTATED 0 0 1 1 2 2 0 0
FGFR2 WILD-TYPE 21 38 113 96 106 71 19 39
'FGFR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S404.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FGFR2 MUTATED 1 1 2 1 1
FGFR2 WILD-TYPE 95 151 114 88 55
'FGFR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S405.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FGFR2 MUTATED 3 3 3 2 0
FGFR2 WILD-TYPE 364 223 88 239 37
'FGFR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S406.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FGFR2 MUTATED 0 1 3 1 0
FGFR2 WILD-TYPE 116 180 154 82 111
'FGFR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S407.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FGFR2 MUTATED 2 2 1
FGFR2 WILD-TYPE 144 127 117
'FGFR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S408.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FGFR2 MUTATED 0 2 1 2 0
FGFR2 WILD-TYPE 59 107 89 102 31
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S409.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FGFR2 MUTATED 1 0 3 3 3 0 1
FGFR2 WILD-TYPE 178 135 212 153 222 48 14
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 1

Table S410.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FGFR2 MUTATED 1 1 1 6 1 1
FGFR2 WILD-TYPE 167 221 187 166 170 51
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S411.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FGFR2 MUTATED 2 4 5
FGFR2 WILD-TYPE 268 409 269
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S412.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FGFR2 MUTATED 0 3 6 1 1
FGFR2 WILD-TYPE 152 171 384 124 115
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S413.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
FGFR2 MUTATED 1 2 4
FGFR2 WILD-TYPE 247 215 183
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S414.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
FGFR2 MUTATED 0 0 3 1 2 1
FGFR2 WILD-TYPE 115 63 186 116 106 59
'ERBB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S415.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ERBB2 MUTATED 1 1 2 1 3 3 0 1
ERBB2 WILD-TYPE 20 37 112 96 105 70 19 38
'ERBB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S416.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ERBB2 MUTATED 2 6 3 1 0
ERBB2 WILD-TYPE 94 146 113 88 56
'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 1

Table S417.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ERBB2 MUTATED 11 2 5 2 0
ERBB2 WILD-TYPE 356 224 86 239 37

Figure S102.  Get High-res Image Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 1

Table S418.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ERBB2 MUTATED 0 1 4 3 4
ERBB2 WILD-TYPE 116 180 153 80 107
'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S419.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ERBB2 MUTATED 2 2 4
ERBB2 WILD-TYPE 144 127 114
'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S420.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ERBB2 MUTATED 1 2 1 3 1
ERBB2 WILD-TYPE 58 107 89 101 30
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0879 (Fisher's exact test), Q value = 1

Table S421.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ERBB2 MUTATED 1 5 4 8 3 0 0
ERBB2 WILD-TYPE 178 130 211 148 222 48 15
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S422.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ERBB2 MUTATED 1 7 2 5 3 3
ERBB2 WILD-TYPE 167 215 186 167 168 49
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 1

Table S423.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ERBB2 MUTATED 10 10 0
ERBB2 WILD-TYPE 260 403 274

Figure S103.  Get High-res Image Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S424.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ERBB2 MUTATED 5 4 8 0 3
ERBB2 WILD-TYPE 147 170 382 125 113
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S425.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ERBB2 MUTATED 5 6 1
ERBB2 WILD-TYPE 243 211 186
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S426.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ERBB2 MUTATED 0 2 3 1 3 3
ERBB2 WILD-TYPE 115 61 186 116 105 57
'CTCF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 1

Table S427.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CTCF MUTATED 1 0 2 1 8 0 0 1
CTCF WILD-TYPE 20 38 112 96 100 73 19 38
'CTCF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 1

Table S428.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CTCF MUTATED 3 3 1 1 5
CTCF WILD-TYPE 93 149 115 88 51

Figure S104.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00385 (Fisher's exact test), Q value = 1

Table S429.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CTCF MUTATED 14 1 0 1 1
CTCF WILD-TYPE 353 225 91 240 36

Figure S105.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 1

Table S430.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CTCF MUTATED 0 8 1 1 1
CTCF WILD-TYPE 116 173 156 82 110

Figure S106.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 1

Table S431.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CTCF MUTATED 1 7 3
CTCF WILD-TYPE 145 122 115
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S432.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CTCF MUTATED 5 3 1 2 0
CTCF WILD-TYPE 54 106 89 102 31
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 1

Table S433.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CTCF MUTATED 1 3 10 1 1 1 0
CTCF WILD-TYPE 178 132 205 155 224 47 15

Figure S107.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S434.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CTCF MUTATED 1 3 8 1 4 0
CTCF WILD-TYPE 167 219 180 171 167 52
'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 1

Table S435.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CTCF MUTATED 4 12 1
CTCF WILD-TYPE 266 401 273

Figure S108.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 1

Table S436.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CTCF MUTATED 2 9 5 0 1
CTCF WILD-TYPE 150 165 385 125 115

Figure S109.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S437.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CTCF MUTATED 6 1 2
CTCF WILD-TYPE 242 216 185
'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S438.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CTCF MUTATED 1 0 2 5 1 0
CTCF WILD-TYPE 114 63 187 112 107 60
'ZMYM3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S439.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZMYM3 MUTATED 1 0 1 4 4 1 0 0
ZMYM3 WILD-TYPE 20 38 113 93 104 72 19 39
'ZMYM3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S440.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZMYM3 MUTATED 1 4 1 4 1
ZMYM3 WILD-TYPE 95 148 115 85 55
'ZMYM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S441.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZMYM3 MUTATED 7 2 1 4 0
ZMYM3 WILD-TYPE 360 224 90 237 37
'ZMYM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S442.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZMYM3 MUTATED 3 1 1 0 1
ZMYM3 WILD-TYPE 113 180 156 83 110
'ZMYM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S443.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZMYM3 MUTATED 5 2 0
ZMYM3 WILD-TYPE 141 127 118
'ZMYM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S444.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZMYM3 MUTATED 1 0 3 2 1
ZMYM3 WILD-TYPE 58 109 87 102 30
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S445.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZMYM3 MUTATED 4 0 5 1 4 0 0
ZMYM3 WILD-TYPE 175 135 210 155 221 48 15
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S446.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZMYM3 MUTATED 4 1 4 4 1 0
ZMYM3 WILD-TYPE 164 221 184 168 170 52
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S447.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZMYM3 MUTATED 2 7 5
ZMYM3 WILD-TYPE 268 406 269
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S448.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZMYM3 MUTATED 2 2 6 2 2
ZMYM3 WILD-TYPE 150 172 384 123 114
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S449.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ZMYM3 MUTATED 3 2 2
ZMYM3 WILD-TYPE 245 215 185
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S450.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ZMYM3 MUTATED 1 0 3 1 2 0
ZMYM3 WILD-TYPE 114 63 186 116 106 60
'FRMPD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S451.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FRMPD2 MUTATED 0 1 1 1 1 2 0 0
FRMPD2 WILD-TYPE 21 37 113 96 107 71 19 39
'FRMPD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S452.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FRMPD2 MUTATED 1 2 2 1 0
FRMPD2 WILD-TYPE 95 150 114 88 56
'FRMPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S453.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FRMPD2 MUTATED 4 3 0 4 1
FRMPD2 WILD-TYPE 363 223 91 237 36
'FRMPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 1

Table S454.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FRMPD2 MUTATED 4 0 3 1 1
FRMPD2 WILD-TYPE 112 181 154 82 110
'FRMPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S455.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FRMPD2 MUTATED 2 0 2
FRMPD2 WILD-TYPE 144 129 116
'FRMPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S456.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FRMPD2 MUTATED 0 1 1 2 0
FRMPD2 WILD-TYPE 59 108 89 102 31
'FRMPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S457.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FRMPD2 MUTATED 4 1 2 3 1 1 0
FRMPD2 WILD-TYPE 175 134 213 153 224 47 15
'FRMPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 1

Table S458.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FRMPD2 MUTATED 4 3 0 5 0 0
FRMPD2 WILD-TYPE 164 219 188 167 171 52

Figure S110.  Get High-res Image Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S459.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FRMPD2 MUTATED 3 5 4
FRMPD2 WILD-TYPE 267 408 270
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S460.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FRMPD2 MUTATED 2 1 5 3 1
FRMPD2 WILD-TYPE 150 173 385 122 115
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S461.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
FRMPD2 MUTATED 1 2 3
FRMPD2 WILD-TYPE 247 215 184
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S462.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
FRMPD2 MUTATED 3 0 1 0 2 0
FRMPD2 WILD-TYPE 112 63 188 117 106 60
'TFE3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S463.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TFE3 MUTATED 1 1 1 2 1 1 0 0
TFE3 WILD-TYPE 20 37 113 95 107 72 19 39
'TFE3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S464.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TFE3 MUTATED 1 2 2 2 0
TFE3 WILD-TYPE 95 150 114 87 56
'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S465.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TFE3 MUTATED 2 1 1 3 0
TFE3 WILD-TYPE 365 225 90 238 37
'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S466.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TFE3 MUTATED 1 1 0 1 1
TFE3 WILD-TYPE 115 180 157 82 110
'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S467.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TFE3 MUTATED 1 1 1
TFE3 WILD-TYPE 145 128 117
'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S468.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TFE3 MUTATED 0 0 1 2 0
TFE3 WILD-TYPE 59 109 89 102 31
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S469.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TFE3 MUTATED 2 2 0 1 2 0 0
TFE3 WILD-TYPE 177 133 215 155 223 48 15
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S470.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TFE3 MUTATED 2 1 0 1 2 1
TFE3 WILD-TYPE 166 221 188 171 169 51
'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S471.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TFE3 MUTATED 3 2 2
TFE3 WILD-TYPE 267 411 272
'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 1

Table S472.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TFE3 MUTATED 1 2 0 1 3
TFE3 WILD-TYPE 151 172 390 124 113

Figure S111.  Get High-res Image Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S473.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TFE3 MUTATED 2 0 1
TFE3 WILD-TYPE 246 217 186
'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S474.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TFE3 MUTATED 1 1 1 0 0 0
TFE3 WILD-TYPE 114 62 188 117 108 60
'GPS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 1

Table S475.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GPS2 MUTATED 0 4 2 0 1 0 0 1
GPS2 WILD-TYPE 21 34 112 97 107 73 19 38

Figure S112.  Get High-res Image Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 1

Table S476.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GPS2 MUTATED 2 6 0 0 0
GPS2 WILD-TYPE 94 146 116 89 56

Figure S113.  Get High-res Image Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 1

Table S477.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GPS2 MUTATED 9 2 0 0 0
GPS2 WILD-TYPE 358 224 91 241 37
'GPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S478.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GPS2 MUTATED 2 1 4 1 0
GPS2 WILD-TYPE 114 180 153 82 111
'GPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S479.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GPS2 MUTATED 0 2 2
GPS2 WILD-TYPE 146 127 116
'GPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S480.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GPS2 MUTATED 1 1 0 2 0
GPS2 WILD-TYPE 58 108 90 102 31
'GPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S481.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GPS2 MUTATED 0 2 1 3 3 2 0
GPS2 WILD-TYPE 179 133 214 153 222 46 15
'GPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S482.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GPS2 MUTATED 0 5 1 1 2 2
GPS2 WILD-TYPE 168 217 187 171 169 50
'GPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S483.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GPS2 MUTATED 5 3 3
GPS2 WILD-TYPE 265 410 271
'GPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S484.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GPS2 MUTATED 2 3 4 0 2
GPS2 WILD-TYPE 150 171 386 125 114
'GPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S485.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
GPS2 MUTATED 2 2 1
GPS2 WILD-TYPE 246 215 186
'GPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S486.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
GPS2 MUTATED 0 0 2 0 1 2
GPS2 WILD-TYPE 115 63 187 117 107 58
'DOCK11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S487.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
DOCK11 MUTATED 0 0 3 4 1 3 0 0
DOCK11 WILD-TYPE 21 38 111 93 107 70 19 39
'DOCK11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S488.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
DOCK11 MUTATED 2 2 5 2 0
DOCK11 WILD-TYPE 94 150 111 87 56
'DOCK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S489.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
DOCK11 MUTATED 8 2 1 9 0
DOCK11 WILD-TYPE 359 224 90 232 37
'DOCK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S490.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
DOCK11 MUTATED 2 2 5 0 3
DOCK11 WILD-TYPE 114 179 152 83 108
'DOCK11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S491.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
DOCK11 MUTATED 5 2 1
DOCK11 WILD-TYPE 141 127 117
'DOCK11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 1

Table S492.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
DOCK11 MUTATED 0 0 4 4 0
DOCK11 WILD-TYPE 59 109 86 100 31
'DOCK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S493.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
DOCK11 MUTATED 5 1 2 7 5 0 0
DOCK11 WILD-TYPE 174 134 213 149 220 48 15
'DOCK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 1

Table S494.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
DOCK11 MUTATED 4 2 1 8 2 3
DOCK11 WILD-TYPE 164 220 187 164 169 49

Figure S114.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S495.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
DOCK11 MUTATED 4 8 8
DOCK11 WILD-TYPE 266 405 266
'DOCK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 1

Table S496.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
DOCK11 MUTATED 1 1 10 1 7
DOCK11 WILD-TYPE 151 173 380 124 109

Figure S115.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 1

Table S497.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
DOCK11 MUTATED 2 3 8
DOCK11 WILD-TYPE 246 214 179

Figure S116.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S498.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
DOCK11 MUTATED 3 0 3 1 2 4
DOCK11 WILD-TYPE 112 63 186 116 106 56
'HRNR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S499.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HRNR MUTATED 0 1 5 5 4 4 0 1
HRNR WILD-TYPE 21 37 109 92 104 69 19 38
'HRNR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S500.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HRNR MUTATED 2 7 4 5 2
HRNR WILD-TYPE 94 145 112 84 54
'HRNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S501.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
HRNR MUTATED 13 3 4 8 3
HRNR WILD-TYPE 354 223 87 233 34
'HRNR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S502.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HRNR MUTATED 4 6 3 4 3
HRNR WILD-TYPE 112 175 154 79 108
'HRNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S503.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HRNR MUTATED 4 6 6
HRNR WILD-TYPE 142 123 112
'HRNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S504.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HRNR MUTATED 2 3 3 6 2
HRNR WILD-TYPE 57 106 87 98 29
'HRNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S505.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
HRNR MUTATED 7 4 7 6 6 1 0
HRNR WILD-TYPE 172 131 208 150 219 47 15
'HRNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S506.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
HRNR MUTATED 7 8 5 4 4 3
HRNR WILD-TYPE 161 214 183 168 167 49
'HRNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S507.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
HRNR MUTATED 6 13 11
HRNR WILD-TYPE 264 400 263
'HRNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S508.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
HRNR MUTATED 3 9 10 2 6
HRNR WILD-TYPE 149 165 380 123 110
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S509.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
HRNR MUTATED 7 6 4
HRNR WILD-TYPE 241 211 183
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S510.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
HRNR MUTATED 4 0 4 4 2 3
HRNR WILD-TYPE 111 63 185 113 106 57
'CASZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S511.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CASZ1 MUTATED 0 1 1 2 2 1 0 0
CASZ1 WILD-TYPE 21 37 113 95 106 72 19 39
'CASZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S512.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CASZ1 MUTATED 1 3 1 2 0
CASZ1 WILD-TYPE 95 149 115 87 56
'CASZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S513.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CASZ1 MUTATED 5 4 1 3 0
CASZ1 WILD-TYPE 362 222 90 238 37
'CASZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S514.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CASZ1 MUTATED 3 2 4 0 1
CASZ1 WILD-TYPE 113 179 153 83 110
'CASZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S515.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CASZ1 MUTATED 1 0 3
CASZ1 WILD-TYPE 145 129 115
'CASZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S516.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CASZ1 MUTATED 0 2 1 1 0
CASZ1 WILD-TYPE 59 107 89 103 31
'CASZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S517.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CASZ1 MUTATED 4 2 3 2 3 0 0
CASZ1 WILD-TYPE 175 133 212 154 222 48 15
'CASZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S518.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CASZ1 MUTATED 4 2 2 4 2 0
CASZ1 WILD-TYPE 164 220 186 168 169 52
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S519.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CASZ1 MUTATED 4 6 3
CASZ1 WILD-TYPE 266 407 271
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S520.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CASZ1 MUTATED 2 2 5 3 1
CASZ1 WILD-TYPE 150 172 385 122 115
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S521.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CASZ1 MUTATED 4 3 2
CASZ1 WILD-TYPE 244 214 185
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S522.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CASZ1 MUTATED 2 1 3 1 2 0
CASZ1 WILD-TYPE 113 62 186 116 106 60
'CDC42EP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S523.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDC42EP1 MUTATED 0 0 1 2 0 0 0 1
CDC42EP1 WILD-TYPE 21 38 113 95 108 73 19 38
'CDC42EP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S524.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDC42EP1 MUTATED 1 1 0 2 0
CDC42EP1 WILD-TYPE 95 151 116 87 56
'CDC42EP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S525.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CDC42EP1 MUTATED 2 0 1 2 0
CDC42EP1 WILD-TYPE 365 226 90 239 37
'CDC42EP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S526.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDC42EP1 MUTATED 0 1 0 0 2
CDC42EP1 WILD-TYPE 116 180 157 83 109
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S527.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDC42EP1 MUTATED 2 1 1
CDC42EP1 WILD-TYPE 144 128 117
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S528.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDC42EP1 MUTATED 1 1 2 0 0
CDC42EP1 WILD-TYPE 58 108 88 104 31
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S529.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CDC42EP1 MUTATED 2 1 0 0 1 1 0
CDC42EP1 WILD-TYPE 177 134 215 156 224 47 15
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S530.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CDC42EP1 MUTATED 2 2 0 0 1 0
CDC42EP1 WILD-TYPE 166 220 188 172 170 52
'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S531.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CDC42EP1 MUTATED 2 1 2
CDC42EP1 WILD-TYPE 268 412 272
'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S532.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CDC42EP1 MUTATED 1 1 0 1 2
CDC42EP1 WILD-TYPE 151 173 390 124 114
'C1QTNF5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S533.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
C1QTNF5 MUTATED 0 0 2 0 0 1 0 0
C1QTNF5 WILD-TYPE 21 38 112 97 108 72 19 39
'C1QTNF5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S534.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
C1QTNF5 MUTATED 2 0 1 0 0
C1QTNF5 WILD-TYPE 94 152 115 89 56
'C1QTNF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S535.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
C1QTNF5 MUTATED 2 1 2 2 0
C1QTNF5 WILD-TYPE 365 225 89 239 37
'C1QTNF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S536.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
C1QTNF5 MUTATED 2 0 1
C1QTNF5 WILD-TYPE 144 129 117
'C1QTNF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S537.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
C1QTNF5 MUTATED 1 1 1 0 0
C1QTNF5 WILD-TYPE 58 108 89 104 31
'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S538.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
C1QTNF5 MUTATED 0 1 1 3 2 0 0
C1QTNF5 WILD-TYPE 179 134 214 153 223 48 15
'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S539.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
C1QTNF5 MUTATED 0 2 0 2 2 1
C1QTNF5 WILD-TYPE 168 220 188 170 169 51
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S540.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
C1QTNF5 MUTATED 3 1 3
C1QTNF5 WILD-TYPE 267 412 271
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00993 (Fisher's exact test), Q value = 1

Table S541.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
C1QTNF5 MUTATED 1 4 0 0 2
C1QTNF5 WILD-TYPE 151 170 390 125 114

Figure S117.  Get High-res Image Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S542.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
C1QTNF5 MUTATED 1 3 0
C1QTNF5 WILD-TYPE 247 214 187
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S543.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
C1QTNF5 MUTATED 0 0 1 0 3 0
C1QTNF5 WILD-TYPE 115 63 188 117 105 60
'TGS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S544.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TGS1 MUTATED 1 0 1 1 1 2 0 0
TGS1 WILD-TYPE 20 38 113 96 107 71 19 39
'TGS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S545.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TGS1 MUTATED 1 1 3 1 0
TGS1 WILD-TYPE 95 151 113 88 56
'TGS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S546.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TGS1 MUTATED 7 2 0 2 1
TGS1 WILD-TYPE 360 224 91 239 36
'TGS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S547.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TGS1 MUTATED 0 4 4 0 3
TGS1 WILD-TYPE 116 177 153 83 108
'TGS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S548.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TGS1 MUTATED 1 0 3
TGS1 WILD-TYPE 145 129 115
'TGS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S549.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TGS1 MUTATED 0 1 1 1 1
TGS1 WILD-TYPE 59 108 89 103 30
'TGS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S550.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TGS1 MUTATED 2 1 3 4 2 1 0
TGS1 WILD-TYPE 177 134 212 152 223 47 15
'TGS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S551.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TGS1 MUTATED 1 2 3 6 0 1
TGS1 WILD-TYPE 167 220 185 166 171 51
'TGS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S552.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TGS1 MUTATED 4 8 1
TGS1 WILD-TYPE 266 405 273
'TGS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S553.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TGS1 MUTATED 3 1 9 0 0
TGS1 WILD-TYPE 149 173 381 125 116
'TGS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S554.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TGS1 MUTATED 3 3 1
TGS1 WILD-TYPE 245 214 186
'TGS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 1

Table S555.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TGS1 MUTATED 0 0 3 0 4 0
TGS1 WILD-TYPE 115 63 186 117 104 60
'USP36 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S556.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
USP36 MUTATED 0 0 2 3 2 0 0 0
USP36 WILD-TYPE 21 38 112 94 106 73 19 39
'USP36 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S557.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
USP36 MUTATED 2 1 0 3 1
USP36 WILD-TYPE 94 151 116 86 55
'USP36 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S558.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
USP36 MUTATED 3 2 1 2 0
USP36 WILD-TYPE 364 224 90 239 37
'USP36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S559.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
USP36 MUTATED 1 1 1 0 0
USP36 WILD-TYPE 115 180 156 83 111
'USP36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S560.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
USP36 MUTATED 3 3 1
USP36 WILD-TYPE 143 126 117
'USP36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S561.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
USP36 MUTATED 1 0 3 3 0
USP36 WILD-TYPE 58 109 87 101 31
'USP36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S562.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
USP36 MUTATED 3 0 2 0 3 0 0
USP36 WILD-TYPE 176 135 213 156 222 48 15
'USP36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S563.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
USP36 MUTATED 3 0 2 0 3 0
USP36 WILD-TYPE 165 222 186 172 168 52
'USP36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S564.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
USP36 MUTATED 2 3 3
USP36 WILD-TYPE 268 410 271
'USP36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S565.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
USP36 MUTATED 1 1 3 3 0
USP36 WILD-TYPE 151 173 387 122 116
'USP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S566.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
USP36 MUTATED 2 1 1
USP36 WILD-TYPE 246 216 186
'USP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S567.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
USP36 MUTATED 1 0 2 0 1 0
USP36 WILD-TYPE 114 63 187 117 107 60
'ASB10 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S568.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ASB10 MUTATED 0 0 1 1 2 0 0 0
ASB10 WILD-TYPE 21 38 113 96 106 73 19 39
'ASB10 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S569.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ASB10 MUTATED 1 0 1 0 2
ASB10 WILD-TYPE 95 152 115 89 54
'ASB10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S570.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ASB10 MUTATED 3 2 1 2 0
ASB10 WILD-TYPE 364 224 90 239 37
'ASB10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S571.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ASB10 MUTATED 2 4 1 1 0
ASB10 WILD-TYPE 114 177 156 82 111
'ASB10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S572.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ASB10 MUTATED 2 0 3 2 1 0 0
ASB10 WILD-TYPE 177 135 212 154 224 48 15
'ASB10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S573.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ASB10 MUTATED 1 1 2 3 1 0
ASB10 WILD-TYPE 167 221 186 169 170 52
'ASB10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S574.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ASB10 MUTATED 0 6 2
ASB10 WILD-TYPE 270 407 272
'ASB10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S575.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ASB10 MUTATED 1 4 2 0 1
ASB10 WILD-TYPE 151 170 388 125 115
'ASB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S576.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ASB10 MUTATED 2 1 2
ASB10 WILD-TYPE 246 216 185
'ASB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S577.  Gene #49: 'ASB10 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ASB10 MUTATED 1 1 1 0 1 1
ASB10 WILD-TYPE 114 62 188 117 107 59
'EIF4A2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S578.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
EIF4A2 MUTATED 1 0 1 0 0 1 0 0
EIF4A2 WILD-TYPE 20 38 113 97 108 72 19 39
'EIF4A2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S579.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
EIF4A2 MUTATED 1 1 1 0 0
EIF4A2 WILD-TYPE 95 151 115 89 56
'EIF4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S580.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
EIF4A2 MUTATED 5 2 0 2 0
EIF4A2 WILD-TYPE 362 224 91 239 37
'EIF4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S581.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
EIF4A2 MUTATED 2 0 3 0 1
EIF4A2 WILD-TYPE 114 181 154 83 110
'EIF4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S582.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
EIF4A2 MUTATED 1 1 1
EIF4A2 WILD-TYPE 145 128 117
'EIF4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S583.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
EIF4A2 MUTATED 1 0 0 1 1
EIF4A2 WILD-TYPE 58 109 90 103 30
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S584.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
EIF4A2 MUTATED 1 0 1 4 1 1 1
EIF4A2 WILD-TYPE 178 135 214 152 224 47 14

Figure S118.  Get High-res Image Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 1

Table S585.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
EIF4A2 MUTATED 1 2 1 1 1 3
EIF4A2 WILD-TYPE 167 220 187 171 170 49
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S586.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
EIF4A2 MUTATED 3 3 3
EIF4A2 WILD-TYPE 267 410 271
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S587.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
EIF4A2 MUTATED 0 0 6 1 2
EIF4A2 WILD-TYPE 152 174 384 124 114
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S588.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
EIF4A2 MUTATED 1 3 2
EIF4A2 WILD-TYPE 247 214 185
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S589.  Gene #50: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
EIF4A2 MUTATED 1 0 1 0 2 2
EIF4A2 WILD-TYPE 114 63 188 117 106 58
'DNAH12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S590.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
DNAH12 MUTATED 0 0 2 2 2 1 0 1
DNAH12 WILD-TYPE 21 38 112 95 106 72 19 38
'DNAH12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S591.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
DNAH12 MUTATED 1 4 1 2 0
DNAH12 WILD-TYPE 95 148 115 87 56
'DNAH12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S592.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
DNAH12 MUTATED 9 5 1 2 0
DNAH12 WILD-TYPE 358 221 90 239 37
'DNAH12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S593.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
DNAH12 MUTATED 1 6 3 0 3
DNAH12 WILD-TYPE 115 175 154 83 108
'DNAH12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S594.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
DNAH12 MUTATED 1 1 3
DNAH12 WILD-TYPE 145 128 115
'DNAH12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S595.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
DNAH12 MUTATED 1 1 2 1 0
DNAH12 WILD-TYPE 58 108 88 103 31
'DNAH12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S596.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
DNAH12 MUTATED 5 0 3 2 5 3 0
DNAH12 WILD-TYPE 174 135 212 154 220 45 15
'DNAH12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S597.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
DNAH12 MUTATED 4 4 4 4 2 0
DNAH12 WILD-TYPE 164 218 184 168 169 52
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S598.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
DNAH12 MUTATED 6 6 6
DNAH12 WILD-TYPE 264 407 268
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S599.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
DNAH12 MUTATED 4 4 6 1 3
DNAH12 WILD-TYPE 148 170 384 124 113
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S600.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
DNAH12 MUTATED 2 5 5
DNAH12 WILD-TYPE 246 212 182
'DNAH12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S601.  Gene #51: 'DNAH12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
DNAH12 MUTATED 3 0 3 1 5 0
DNAH12 WILD-TYPE 112 63 186 116 103 60
'RHBG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S602.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RHBG MUTATED 1 2 0 1 0
RHBG WILD-TYPE 366 224 91 240 37
'RHBG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S603.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RHBG MUTATED 2 0 0 2 0 0 0
RHBG WILD-TYPE 177 135 215 154 225 48 15
'RHBG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S604.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RHBG MUTATED 2 0 0 2 0 0
RHBG WILD-TYPE 166 222 188 170 171 52
'RHBG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S605.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RHBG MUTATED 0 2 2
RHBG WILD-TYPE 270 411 272
'RHBG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S606.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RHBG MUTATED 0 0 2 2 0
RHBG WILD-TYPE 152 174 388 123 116
'RHBG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S607.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RHBG MUTATED 1 0 2
RHBG WILD-TYPE 247 217 185
'RHBG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S608.  Gene #52: 'RHBG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RHBG MUTATED 2 0 1 0 0 0
RHBG WILD-TYPE 113 63 188 117 108 60
'PAX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S609.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PAX2 MUTATED 0 0 1 0 1 1 0 0
PAX2 WILD-TYPE 21 38 113 97 107 72 19 39
'PAX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S610.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PAX2 MUTATED 1 0 1 0 1
PAX2 WILD-TYPE 95 152 115 89 55
'PAX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S611.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PAX2 MUTATED 1 0 0 3 0
PAX2 WILD-TYPE 366 226 91 238 37
'PAX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S612.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PAX2 MUTATED 0 2 1
PAX2 WILD-TYPE 146 127 117
'PAX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S613.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PAX2 MUTATED 1 2 0 0 0
PAX2 WILD-TYPE 58 107 90 104 31
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S614.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PAX2 MUTATED 0 0 0 1 3 0 0
PAX2 WILD-TYPE 179 135 215 155 222 48 15
'PAX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S615.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PAX2 MUTATED 0 0 1 1 1 1
PAX2 WILD-TYPE 168 222 187 171 170 51
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 1

Table S616.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PAX2 MUTATED 0 4 0
PAX2 WILD-TYPE 270 409 274
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S617.  Gene #53: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PAX2 MUTATED 0 1 3 0 0
PAX2 WILD-TYPE 152 173 387 125 116
'FXYD5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S618.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FXYD5 MUTATED 0 1 1 1 0 0 0 0
FXYD5 WILD-TYPE 21 37 113 96 108 73 19 39
'FXYD5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S619.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FXYD5 MUTATED 1 1 0 1 0
FXYD5 WILD-TYPE 95 151 116 88 56
'FXYD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S620.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FXYD5 MUTATED 4 0 0 1 0
FXYD5 WILD-TYPE 363 226 91 240 37
'FXYD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S621.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FXYD5 MUTATED 2 0 1
FXYD5 WILD-TYPE 144 129 117
'FXYD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S622.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FXYD5 MUTATED 0 1 1 1 0
FXYD5 WILD-TYPE 59 108 89 103 31
'FXYD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S623.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FXYD5 MUTATED 1 3 0 0 1 0 0
FXYD5 WILD-TYPE 178 132 215 156 224 48 15
'FXYD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S624.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FXYD5 MUTATED 1 3 0 1 0 0
FXYD5 WILD-TYPE 167 219 188 171 171 52
'FXYD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S625.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FXYD5 MUTATED 3 1 1
FXYD5 WILD-TYPE 267 412 273
'FXYD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S626.  Gene #54: 'FXYD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FXYD5 MUTATED 2 0 2 0 1
FXYD5 WILD-TYPE 150 174 388 125 115
'BCORL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S627.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
BCORL1 MUTATED 0 3 2 2 0 1 0 0
BCORL1 WILD-TYPE 21 35 112 95 108 72 19 39
'BCORL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S628.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
BCORL1 MUTATED 2 3 1 2 0
BCORL1 WILD-TYPE 94 149 115 87 56
'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S629.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
BCORL1 MUTATED 5 6 0 4 0
BCORL1 WILD-TYPE 362 220 91 237 37
'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S630.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
BCORL1 MUTATED 4 1 3 1 0
BCORL1 WILD-TYPE 112 180 154 82 111
'BCORL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S631.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
BCORL1 MUTATED 3 3 0
BCORL1 WILD-TYPE 143 126 118
'BCORL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00796 (Fisher's exact test), Q value = 1

Table S632.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
BCORL1 MUTATED 0 0 1 2 3
BCORL1 WILD-TYPE 59 109 89 102 28

Figure S119.  Get High-res Image Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S633.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
BCORL1 MUTATED 4 3 1 4 2 1 0
BCORL1 WILD-TYPE 175 132 214 152 223 47 15
'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S634.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
BCORL1 MUTATED 4 4 0 3 3 1
BCORL1 WILD-TYPE 164 218 188 169 168 51
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S635.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
BCORL1 MUTATED 3 5 7
BCORL1 WILD-TYPE 267 408 267
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S636.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
BCORL1 MUTATED 2 3 5 3 2
BCORL1 WILD-TYPE 150 171 385 122 114
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S637.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
BCORL1 MUTATED 6 2 5
BCORL1 WILD-TYPE 242 215 182
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S638.  Gene #55: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
BCORL1 MUTATED 4 2 4 1 1 1
BCORL1 WILD-TYPE 111 61 185 116 107 59
'ZNF362 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S639.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZNF362 MUTATED 0 0 2 0 2 1 0 0
ZNF362 WILD-TYPE 21 38 112 97 106 72 19 39
'ZNF362 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S640.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZNF362 MUTATED 1 2 1 0 1
ZNF362 WILD-TYPE 95 150 115 89 55
'ZNF362 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S641.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZNF362 MUTATED 1 0 1 1 1
ZNF362 WILD-TYPE 366 226 90 240 36
'ZNF362 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S642.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZNF362 MUTATED 0 3 1
ZNF362 WILD-TYPE 146 126 117
'ZNF362 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S643.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZNF362 MUTATED 1 1 0 2 0
ZNF362 WILD-TYPE 58 108 90 102 31
'ZNF362 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S644.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZNF362 MUTATED 0 1 0 1 3 0 0
ZNF362 WILD-TYPE 179 134 215 155 222 48 15
'ZNF362 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 1

Table S645.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZNF362 MUTATED 0 1 0 0 3 1
ZNF362 WILD-TYPE 168 221 188 172 168 51
'ZNF362 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S646.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZNF362 MUTATED 1 4 0
ZNF362 WILD-TYPE 269 409 274
'ZNF362 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 1

Table S647.  Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZNF362 MUTATED 0 4 1 0 0
ZNF362 WILD-TYPE 152 170 389 125 116

Figure S120.  Get High-res Image Gene #56: 'ZNF362 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTHLH MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S648.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PTHLH MUTATED 0 1 0 0 1 2 0 1
PTHLH WILD-TYPE 21 37 114 97 107 71 19 38
'PTHLH MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S649.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PTHLH MUTATED 1 2 2 0 0
PTHLH WILD-TYPE 95 150 114 89 56
'PTHLH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 1

Table S650.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PTHLH MUTATED 1 1 2 1 2
PTHLH WILD-TYPE 366 225 89 240 35

Figure S121.  Get High-res Image Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTHLH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S651.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PTHLH MUTATED 1 0 3 1 0
PTHLH WILD-TYPE 115 181 154 82 111
'PTHLH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S652.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PTHLH MUTATED 1 1 2
PTHLH WILD-TYPE 145 128 116
'PTHLH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S653.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PTHLH MUTATED 0 2 0 2 0
PTHLH WILD-TYPE 59 107 90 102 31
'PTHLH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 1

Table S654.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PTHLH MUTATED 0 1 3 1 0 2 0
PTHLH WILD-TYPE 179 134 212 155 225 46 15

Figure S122.  Get High-res Image Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTHLH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S655.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PTHLH MUTATED 0 2 1 1 3 0
PTHLH WILD-TYPE 168 220 187 171 168 52
'PTHLH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S656.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PTHLH MUTATED 1 5 0
PTHLH WILD-TYPE 269 408 274
'PTHLH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S657.  Gene #57: 'PTHLH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PTHLH MUTATED 0 2 4 0 0
PTHLH WILD-TYPE 152 172 386 125 116
'GPRIN2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S658.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GPRIN2 MUTATED 0 1 0 2 3 1 0 0
GPRIN2 WILD-TYPE 21 37 114 95 105 72 19 39
'GPRIN2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S659.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GPRIN2 MUTATED 0 3 1 2 1
GPRIN2 WILD-TYPE 96 149 115 87 55
'GPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S660.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GPRIN2 MUTATED 4 3 0 4 0
GPRIN2 WILD-TYPE 363 223 91 237 37
'GPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S661.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GPRIN2 MUTATED 2 3 2 0 0
GPRIN2 WILD-TYPE 114 178 155 83 111
'GPRIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S662.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GPRIN2 MUTATED 3 2 1
GPRIN2 WILD-TYPE 143 127 117
'GPRIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S663.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GPRIN2 MUTATED 2 0 1 1 2
GPRIN2 WILD-TYPE 57 109 89 103 29

Figure S123.  Get High-res Image Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S664.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GPRIN2 MUTATED 3 1 4 2 1 0 0
GPRIN2 WILD-TYPE 176 134 211 154 224 48 15
'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S665.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GPRIN2 MUTATED 4 1 3 3 0 0
GPRIN2 WILD-TYPE 164 221 185 169 171 52
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S666.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GPRIN2 MUTATED 2 4 4
GPRIN2 WILD-TYPE 268 409 270
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 1

Table S667.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GPRIN2 MUTATED 1 3 2 4 0
GPRIN2 WILD-TYPE 151 171 388 121 116
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S668.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
GPRIN2 MUTATED 3 2 4
GPRIN2 WILD-TYPE 245 215 183
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S669.  Gene #58: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
GPRIN2 MUTATED 4 0 4 0 1 0
GPRIN2 WILD-TYPE 111 63 185 117 107 60
'ANKRD12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S670.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ANKRD12 MUTATED 0 1 6 0 2 1 0 0
ANKRD12 WILD-TYPE 21 37 108 97 106 72 19 39
'ANKRD12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S671.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ANKRD12 MUTATED 4 5 1 0 0
ANKRD12 WILD-TYPE 92 147 115 89 56
'ANKRD12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S672.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ANKRD12 MUTATED 7 2 3 5 0
ANKRD12 WILD-TYPE 360 224 88 236 37
'ANKRD12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S673.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ANKRD12 MUTATED 1 3 3 1 3
ANKRD12 WILD-TYPE 115 178 154 82 108
'ANKRD12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S674.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ANKRD12 MUTATED 4 1 1
ANKRD12 WILD-TYPE 142 128 117
'ANKRD12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S675.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ANKRD12 MUTATED 0 1 0 4 1
ANKRD12 WILD-TYPE 59 108 90 100 30
'ANKRD12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S676.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ANKRD12 MUTATED 1 3 2 3 6 3 0
ANKRD12 WILD-TYPE 178 132 213 153 219 45 15
'ANKRD12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 1

Table S677.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ANKRD12 MUTATED 1 8 0 5 4 0
ANKRD12 WILD-TYPE 167 214 188 167 167 52

Figure S124.  Get High-res Image Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S678.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ANKRD12 MUTATED 4 10 4
ANKRD12 WILD-TYPE 266 403 270
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S679.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ANKRD12 MUTATED 3 3 9 1 2
ANKRD12 WILD-TYPE 149 171 381 124 114
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S680.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ANKRD12 MUTATED 3 3 3
ANKRD12 WILD-TYPE 245 214 184
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S681.  Gene #59: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ANKRD12 MUTATED 1 2 2 1 3 0
ANKRD12 WILD-TYPE 114 61 187 116 105 60
'ZNF687 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S682.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZNF687 MUTATED 0 2 2 4 1 0 0 0
ZNF687 WILD-TYPE 21 36 112 93 107 73 19 39
'ZNF687 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S683.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZNF687 MUTATED 2 3 0 4 0
ZNF687 WILD-TYPE 94 149 116 85 56
'ZNF687 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S684.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZNF687 MUTATED 3 2 0 6 0
ZNF687 WILD-TYPE 364 224 91 235 37
'ZNF687 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S685.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZNF687 MUTATED 4 2 1 0 0
ZNF687 WILD-TYPE 112 179 156 83 111
'ZNF687 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S686.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZNF687 MUTATED 6 1 1
ZNF687 WILD-TYPE 140 128 117
'ZNF687 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0863 (Fisher's exact test), Q value = 1

Table S687.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZNF687 MUTATED 0 0 4 3 1
ZNF687 WILD-TYPE 59 109 86 101 30
'ZNF687 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S688.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZNF687 MUTATED 6 1 0 0 4 0 0
ZNF687 WILD-TYPE 173 134 215 156 221 48 15

Figure S125.  Get High-res Image Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ZNF687 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S689.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZNF687 MUTATED 5 2 0 1 3 0
ZNF687 WILD-TYPE 163 220 188 171 168 52
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S690.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZNF687 MUTATED 2 3 6
ZNF687 WILD-TYPE 268 410 268
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 1

Table S691.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZNF687 MUTATED 0 2 4 5 0
ZNF687 WILD-TYPE 152 172 386 120 116

Figure S126.  Get High-res Image Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ZNF687 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S692.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ZNF687 MUTATED 2 1 3
ZNF687 WILD-TYPE 246 216 184
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S693.  Gene #60: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ZNF687 MUTATED 3 0 2 1 0 0
ZNF687 WILD-TYPE 112 63 187 116 108 60
'KCNN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S694.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KCNN3 MUTATED 1 0 0 2 0 1 0 1
KCNN3 WILD-TYPE 20 38 114 95 108 72 19 38
'KCNN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S695.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KCNN3 MUTATED 0 1 2 2 0
KCNN3 WILD-TYPE 96 151 114 87 56
'KCNN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S696.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
KCNN3 MUTATED 1 4 0 4 0
KCNN3 WILD-TYPE 366 222 91 237 37
'KCNN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 1

Table S697.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KCNN3 MUTATED 3 1 0 1 0
KCNN3 WILD-TYPE 113 180 157 82 111
'KCNN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S698.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KCNN3 MUTATED 3 0 1
KCNN3 WILD-TYPE 143 129 117
'KCNN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S699.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KCNN3 MUTATED 0 1 2 1 0
KCNN3 WILD-TYPE 59 108 88 103 31
'KCNN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 1

Table S700.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
KCNN3 MUTATED 2 2 0 2 1 1 1
KCNN3 WILD-TYPE 177 133 215 154 224 47 14
'KCNN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S701.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
KCNN3 MUTATED 2 1 0 4 1 1
KCNN3 WILD-TYPE 166 221 188 168 170 51
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S702.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
KCNN3 MUTATED 1 3 5
KCNN3 WILD-TYPE 269 410 269
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S703.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
KCNN3 MUTATED 0 1 5 1 2
KCNN3 WILD-TYPE 152 173 385 124 114
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S704.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
KCNN3 MUTATED 3 0 2
KCNN3 WILD-TYPE 245 217 185
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S705.  Gene #61: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
KCNN3 MUTATED 0 0 3 1 0 1
KCNN3 WILD-TYPE 115 63 186 116 108 59
'ICOSLG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S706.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ICOSLG MUTATED 0 0 2 1 0 0 0 0
ICOSLG WILD-TYPE 21 38 112 96 108 73 19 39
'ICOSLG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S707.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ICOSLG MUTATED 2 0 0 1 0
ICOSLG WILD-TYPE 94 152 116 88 56
'ICOSLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0072 (Fisher's exact test), Q value = 1

Table S708.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ICOSLG MUTATED 0 1 0 2 2
ICOSLG WILD-TYPE 367 225 91 239 35

Figure S127.  Get High-res Image Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ICOSLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S709.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ICOSLG MUTATED 1 0 2 0 1
ICOSLG WILD-TYPE 115 181 155 83 110
'ICOSLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S710.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ICOSLG MUTATED 1 0 2 0 2 0 0
ICOSLG WILD-TYPE 178 135 213 156 223 48 15
'ICOSLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S711.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ICOSLG MUTATED 1 1 0 2 1 0
ICOSLG WILD-TYPE 167 221 188 170 170 52
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S712.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ICOSLG MUTATED 0 4 1
ICOSLG WILD-TYPE 270 409 273
'ICOSLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S713.  Gene #62: 'ICOSLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ICOSLG MUTATED 0 1 2 1 1
ICOSLG WILD-TYPE 152 173 388 124 115
'PIK3R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S714.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PIK3R1 MUTATED 0 0 1 1 1 5 0 0
PIK3R1 WILD-TYPE 21 38 113 96 107 68 19 39
'PIK3R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S715.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PIK3R1 MUTATED 1 1 5 1 0
PIK3R1 WILD-TYPE 95 151 111 88 56
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S716.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PIK3R1 MUTATED 4 5 1 4 1
PIK3R1 WILD-TYPE 363 221 90 237 36
'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S717.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PIK3R1 MUTATED 3 1 3 0 0
PIK3R1 WILD-TYPE 113 180 154 83 111
'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S718.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PIK3R1 MUTATED 3 1 1
PIK3R1 WILD-TYPE 143 128 117
'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 1

Table S719.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PIK3R1 MUTATED 0 0 0 3 2
PIK3R1 WILD-TYPE 59 109 90 101 29

Figure S128.  Get High-res Image Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S720.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PIK3R1 MUTATED 3 1 3 7 1 0 0
PIK3R1 WILD-TYPE 176 134 212 149 224 48 15
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.071 (Fisher's exact test), Q value = 1

Table S721.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PIK3R1 MUTATED 3 1 1 7 2 1
PIK3R1 WILD-TYPE 165 221 187 165 169 51
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S722.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PIK3R1 MUTATED 0 10 4
PIK3R1 WILD-TYPE 270 403 270

Figure S129.  Get High-res Image Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S723.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PIK3R1 MUTATED 0 2 8 3 1
PIK3R1 WILD-TYPE 152 172 382 122 115
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S724.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PIK3R1 MUTATED 7 1 3
PIK3R1 WILD-TYPE 241 216 184
'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S725.  Gene #63: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PIK3R1 MUTATED 3 0 5 1 1 1
PIK3R1 WILD-TYPE 112 63 184 116 107 59
'MR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S726.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MR1 MUTATED 0 2 0 1 2 0 0 0
MR1 WILD-TYPE 21 36 114 96 106 73 19 39
'MR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S727.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MR1 MUTATED 0 3 1 1 0
MR1 WILD-TYPE 96 149 115 88 56
'MR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S728.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MR1 MUTATED 3 2 1 1 0
MR1 WILD-TYPE 364 224 90 240 37
'MR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S729.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MR1 MUTATED 0 0 2 0 1
MR1 WILD-TYPE 116 181 155 83 110
'MR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S730.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MR1 MUTATED 2 1 1
MR1 WILD-TYPE 144 128 117
'MR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S731.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MR1 MUTATED 1 1 1 1 0
MR1 WILD-TYPE 58 108 89 103 31
'MR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S732.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MR1 MUTATED 1 1 2 3 0 0 0
MR1 WILD-TYPE 178 134 213 153 225 48 15
'MR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S733.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MR1 MUTATED 1 2 1 3 0 0
MR1 WILD-TYPE 167 220 187 169 171 52
'MR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S734.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MR1 MUTATED 2 2 3
MR1 WILD-TYPE 268 411 271
'MR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S735.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MR1 MUTATED 0 0 6 1 0
MR1 WILD-TYPE 152 174 384 124 116
'MR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S736.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MR1 MUTATED 1 0 2
MR1 WILD-TYPE 247 217 185
'MR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S737.  Gene #64: 'MR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MR1 MUTATED 1 0 2 0 0 0
MR1 WILD-TYPE 114 63 187 117 108 60
'CABYR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S738.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CABYR MUTATED 2 2 0 2 0
CABYR WILD-TYPE 365 224 91 239 37
'CABYR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S739.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CABYR MUTATED 2 0 2 0 1
CABYR WILD-TYPE 114 181 155 83 110
'CABYR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 1

Table S740.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CABYR MUTATED 0 0 0 5 1 0 0
CABYR WILD-TYPE 179 135 215 151 224 48 15

Figure S130.  Get High-res Image Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CABYR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.44

Table S741.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CABYR MUTATED 0 0 0 4 0 2
CABYR WILD-TYPE 168 222 188 168 171 50

Figure S131.  Get High-res Image Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CABYR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S742.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CABYR MUTATED 0 3 2
CABYR WILD-TYPE 270 410 272
'CABYR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S743.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CABYR MUTATED 0 0 3 0 2
CABYR WILD-TYPE 152 174 387 125 114
'CABYR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 1

Table S744.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CABYR MUTATED 1 0 4
CABYR WILD-TYPE 247 217 183

Figure S132.  Get High-res Image Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CABYR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S745.  Gene #65: 'CABYR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CABYR MUTATED 0 0 3 0 0 2
CABYR WILD-TYPE 115 63 186 117 108 58
'AKT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S746.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
AKT2 MUTATED 0 0 0 0 2 0 1 0
AKT2 WILD-TYPE 21 38 114 97 106 73 18 39
'AKT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S747.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
AKT2 MUTATED 1 1 1 0 0
AKT2 WILD-TYPE 95 151 115 89 56
'AKT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S748.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
AKT2 MUTATED 1 2 1 1 0
AKT2 WILD-TYPE 366 224 90 240 37
'AKT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S749.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
AKT2 MUTATED 0 1 1 2 0
AKT2 WILD-TYPE 116 180 156 81 111
'AKT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S750.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
AKT2 MUTATED 0 0 2 1 1 0 1
AKT2 WILD-TYPE 179 135 213 155 224 48 14
'AKT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S751.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
AKT2 MUTATED 0 0 1 3 1 0
AKT2 WILD-TYPE 168 222 187 169 170 52
'AKT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 1

Table S752.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
AKT2 MUTATED 0 5 0
AKT2 WILD-TYPE 270 408 274
'AKT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S753.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
AKT2 MUTATED 0 1 4 0 0
AKT2 WILD-TYPE 152 173 386 125 116
'AKT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S754.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
AKT2 MUTATED 1 0 2
AKT2 WILD-TYPE 247 217 185
'AKT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S755.  Gene #66: 'AKT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
AKT2 MUTATED 0 0 2 1 0 0
AKT2 WILD-TYPE 115 63 187 116 108 60
'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S756.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZBTB7C MUTATED 2 1 1 0 0
ZBTB7C WILD-TYPE 365 225 90 241 37
'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S757.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZBTB7C MUTATED 0 1 1 1 0
ZBTB7C WILD-TYPE 116 180 156 82 111
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S758.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZBTB7C MUTATED 0 1 1 1 2 0 0
ZBTB7C WILD-TYPE 179 134 214 155 223 48 15
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S759.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZBTB7C MUTATED 0 3 0 1 1 0
ZBTB7C WILD-TYPE 168 219 188 171 170 52
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S760.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZBTB7C MUTATED 2 2 1
ZBTB7C WILD-TYPE 268 411 273
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S761.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZBTB7C MUTATED 2 0 2 0 1
ZBTB7C WILD-TYPE 150 174 388 125 115
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S762.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ZBTB7C MUTATED 2 1 0
ZBTB7C WILD-TYPE 246 216 187
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S763.  Gene #67: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ZBTB7C MUTATED 0 0 1 1 1 0
ZBTB7C WILD-TYPE 115 63 188 116 107 60
'RIBC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S764.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RIBC1 MUTATED 0 1 1 0 2 0 0 0
RIBC1 WILD-TYPE 21 37 113 97 106 73 19 39
'RIBC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S765.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RIBC1 MUTATED 1 3 0 0 0
RIBC1 WILD-TYPE 95 149 116 89 56
'RIBC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S766.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RIBC1 MUTATED 2 1 1 0 0
RIBC1 WILD-TYPE 365 225 90 241 37
'RIBC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 1

Table S767.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RIBC1 MUTATED 0 0 1 2 0
RIBC1 WILD-TYPE 116 181 156 81 111
'RIBC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S768.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RIBC1 MUTATED 0 1 2 0 1 0 0
RIBC1 WILD-TYPE 179 134 213 156 224 48 15
'RIBC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S769.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RIBC1 MUTATED 0 1 1 1 1 0
RIBC1 WILD-TYPE 168 221 187 171 170 52
'RIBC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S770.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RIBC1 MUTATED 1 3 0
RIBC1 WILD-TYPE 269 410 274
'RIBC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S771.  Gene #68: 'RIBC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RIBC1 MUTATED 0 1 2 0 1
RIBC1 WILD-TYPE 152 173 388 125 115
'CEP57 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S772.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CEP57 MUTATED 0 0 0 1 0 2 0 0
CEP57 WILD-TYPE 21 38 114 96 108 71 19 39
'CEP57 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S773.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CEP57 MUTATED 0 0 2 1 0
CEP57 WILD-TYPE 96 152 114 88 56
'CEP57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S774.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CEP57 MUTATED 1 0 2 3 0
CEP57 WILD-TYPE 366 226 89 238 37
'CEP57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S775.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CEP57 MUTATED 0 1 1 0 3
CEP57 WILD-TYPE 116 180 156 83 108
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S776.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CEP57 MUTATED 1 0 1 3 0 1 0
CEP57 WILD-TYPE 178 135 214 153 225 47 15
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S777.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CEP57 MUTATED 1 1 2 2 0 0
CEP57 WILD-TYPE 167 221 186 170 171 52
'CEP57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 1

Table S778.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CEP57 MUTATED 4 2 0
CEP57 WILD-TYPE 266 411 274
'CEP57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S779.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CEP57 MUTATED 2 0 3 0 1
CEP57 WILD-TYPE 150 174 387 125 115
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 1

Table S780.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CEP57 MUTATED 0 3 0
CEP57 WILD-TYPE 248 214 187
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S781.  Gene #69: 'CEP57 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CEP57 MUTATED 0 0 0 1 2 0
CEP57 WILD-TYPE 115 63 189 116 106 60
'TARBP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S782.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TARBP2 MUTATED 0 1 1 2 0 1 0 0
TARBP2 WILD-TYPE 21 37 113 95 108 72 19 39
'TARBP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S783.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TARBP2 MUTATED 1 1 2 1 0
TARBP2 WILD-TYPE 95 151 114 88 56
'TARBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S784.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TARBP2 MUTATED 0 2 0 4 0
TARBP2 WILD-TYPE 367 224 91 237 37
'TARBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S785.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TARBP2 MUTATED 1 0 1 0 1
TARBP2 WILD-TYPE 115 181 156 83 110
'TARBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S786.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TARBP2 MUTATED 4 1 0
TARBP2 WILD-TYPE 142 128 118
'TARBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S787.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TARBP2 MUTATED 1 0 3 1 0
TARBP2 WILD-TYPE 58 109 87 103 31
'TARBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S788.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TARBP2 MUTATED 2 0 0 2 2 0 0
TARBP2 WILD-TYPE 177 135 215 154 223 48 15
'TARBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S789.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TARBP2 MUTATED 2 1 0 1 1 1
TARBP2 WILD-TYPE 166 221 188 171 170 51
'TARBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S790.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TARBP2 MUTATED 1 1 4
TARBP2 WILD-TYPE 269 412 270
'TARBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S791.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TARBP2 MUTATED 1 1 1 1 2
TARBP2 WILD-TYPE 151 173 389 124 114
'TARBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S792.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TARBP2 MUTATED 0 1 2
TARBP2 WILD-TYPE 248 216 185
'TARBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S793.  Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TARBP2 MUTATED 0 0 0 0 1 2
TARBP2 WILD-TYPE 115 63 189 117 107 58

Figure S133.  Get High-res Image Gene #70: 'TARBP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OXCT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S794.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
OXCT2 MUTATED 0 1 0 0 1 1 0 0
OXCT2 WILD-TYPE 21 37 114 97 107 72 19 39
'OXCT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S795.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
OXCT2 MUTATED 0 1 1 0 1
OXCT2 WILD-TYPE 96 151 115 89 55
'OXCT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S796.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
OXCT2 MUTATED 1 2 0 1 0
OXCT2 WILD-TYPE 366 224 91 240 37
'OXCT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S797.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
OXCT2 MUTATED 0 1 1 1 1 0 0
OXCT2 WILD-TYPE 179 134 214 155 224 48 15
'OXCT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S798.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
OXCT2 MUTATED 0 1 1 1 0 1
OXCT2 WILD-TYPE 168 221 187 171 171 51
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S799.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
OXCT2 MUTATED 1 2 1
OXCT2 WILD-TYPE 269 411 273
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S800.  Gene #71: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
OXCT2 MUTATED 0 2 1 0 1
OXCT2 WILD-TYPE 152 172 389 125 115
'ANKRD20A4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S801.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ANKRD20A4 MUTATED 0 0 0 0 1 1 1 0
ANKRD20A4 WILD-TYPE 21 38 114 97 107 72 18 39
'ANKRD20A4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0963 (Fisher's exact test), Q value = 1

Table S802.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ANKRD20A4 MUTATED 0 0 2 0 1
ANKRD20A4 WILD-TYPE 96 152 114 89 55
'ANKRD20A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S803.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ANKRD20A4 MUTATED 3 1 0 3 0
ANKRD20A4 WILD-TYPE 364 225 91 238 37
'ANKRD20A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S804.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ANKRD20A4 MUTATED 0 2 1 1 1
ANKRD20A4 WILD-TYPE 116 179 156 82 110
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S805.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ANKRD20A4 MUTATED 2 1 0
ANKRD20A4 WILD-TYPE 144 128 118
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S806.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ANKRD20A4 MUTATED 1 0 1 1 0
ANKRD20A4 WILD-TYPE 58 109 89 103 31
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 1

Table S807.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ANKRD20A4 MUTATED 0 2 1 3 0 1 0
ANKRD20A4 WILD-TYPE 179 133 214 153 225 47 15
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S808.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ANKRD20A4 MUTATED 0 3 3 0 0 1
ANKRD20A4 WILD-TYPE 168 219 185 172 171 51
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S809.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ANKRD20A4 MUTATED 2 3 2
ANKRD20A4 WILD-TYPE 268 410 272
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S810.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ANKRD20A4 MUTATED 2 2 2 0 1
ANKRD20A4 WILD-TYPE 150 172 388 125 115
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S811.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ANKRD20A4 MUTATED 1 2 2
ANKRD20A4 WILD-TYPE 247 215 185
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S812.  Gene #72: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ANKRD20A4 MUTATED 0 0 1 1 2 1
ANKRD20A4 WILD-TYPE 115 63 188 116 106 59
'HIST1H3B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S813.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HIST1H3B MUTATED 0 0 1 1 0 2 0 1
HIST1H3B WILD-TYPE 21 38 113 96 108 71 19 38
'HIST1H3B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S814.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HIST1H3B MUTATED 1 1 2 1 0
HIST1H3B WILD-TYPE 95 151 114 88 56
'HIST1H3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S815.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
HIST1H3B MUTATED 3 3 1 3 1
HIST1H3B WILD-TYPE 364 223 90 238 36
'HIST1H3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S816.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HIST1H3B MUTATED 2 2 4 0 1
HIST1H3B WILD-TYPE 114 179 153 83 110
'HIST1H3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S817.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HIST1H3B MUTATED 3 1 1
HIST1H3B WILD-TYPE 143 128 117
'HIST1H3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S818.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HIST1H3B MUTATED 0 2 1 1 1
HIST1H3B WILD-TYPE 59 107 89 103 30
'HIST1H3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S819.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
HIST1H3B MUTATED 2 1 0 4 3 1 0
HIST1H3B WILD-TYPE 177 134 215 152 222 47 15
'HIST1H3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S820.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
HIST1H3B MUTATED 2 2 1 5 1 0
HIST1H3B WILD-TYPE 166 220 187 167 170 52
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S821.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
HIST1H3B MUTATED 2 6 3
HIST1H3B WILD-TYPE 268 407 271
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S822.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
HIST1H3B MUTATED 1 1 7 2 0
HIST1H3B WILD-TYPE 151 173 383 123 116
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S823.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
HIST1H3B MUTATED 3 2 1
HIST1H3B WILD-TYPE 245 215 186
'HIST1H3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S824.  Gene #73: 'HIST1H3B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
HIST1H3B MUTATED 1 0 2 2 1 0
HIST1H3B WILD-TYPE 114 63 187 115 107 60
'MED23 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 1

Table S825.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MED23 MUTATED 0 1 1 0 1 1 0 3
MED23 WILD-TYPE 21 37 113 97 107 72 19 36
'MED23 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S826.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MED23 MUTATED 1 5 1 0 0
MED23 WILD-TYPE 95 147 115 89 56
'MED23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S827.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MED23 MUTATED 10 2 1 1 0
MED23 WILD-TYPE 357 224 90 240 37
'MED23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 1

Table S828.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MED23 MUTATED 0 4 2 4 0
MED23 WILD-TYPE 116 177 155 79 111

Figure S134.  Get High-res Image Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MED23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S829.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MED23 MUTATED 0 3 1
MED23 WILD-TYPE 146 126 117
'MED23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S830.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MED23 MUTATED 0 2 0 2 0
MED23 WILD-TYPE 59 107 90 102 31
'MED23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S831.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MED23 MUTATED 0 4 3 1 4 2 0
MED23 WILD-TYPE 179 131 212 155 221 46 15
'MED23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 1

Table S832.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MED23 MUTATED 0 9 0 1 4 0
MED23 WILD-TYPE 168 213 188 171 167 52

Figure S135.  Get High-res Image Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MED23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 1

Table S833.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MED23 MUTATED 8 5 1
MED23 WILD-TYPE 262 408 273

Figure S136.  Get High-res Image Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MED23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S834.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MED23 MUTATED 4 4 6 0 0
MED23 WILD-TYPE 148 170 384 125 116
'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S835.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MED23 MUTATED 5 4 0
MED23 WILD-TYPE 243 213 187
'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S836.  Gene #74: 'MED23 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MED23 MUTATED 0 1 3 2 3 0
MED23 WILD-TYPE 115 62 186 115 105 60
'MUC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 1

Table S837.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MUC6 MUTATED 2 2 0 3 1 0 0 1
MUC6 WILD-TYPE 19 36 114 94 107 73 19 38

Figure S137.  Get High-res Image Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MUC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S838.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MUC6 MUTATED 0 3 3 2 1
MUC6 WILD-TYPE 96 149 113 87 55
'MUC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S839.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MUC6 MUTATED 4 4 0 6 0
MUC6 WILD-TYPE 363 222 91 235 37
'MUC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S840.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MUC6 MUTATED 3 0 3 2 2
MUC6 WILD-TYPE 113 181 154 81 109
'MUC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S841.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MUC6 MUTATED 4 1 4
MUC6 WILD-TYPE 142 128 114
'MUC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S842.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MUC6 MUTATED 1 3 2 2 1
MUC6 WILD-TYPE 58 106 88 102 30
'MUC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 1

Table S843.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MUC6 MUTATED 6 1 2 4 0 1 0
MUC6 WILD-TYPE 173 134 213 152 225 47 15
'MUC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S844.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MUC6 MUTATED 5 3 2 3 0 1
MUC6 WILD-TYPE 163 219 186 169 171 51
'MUC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S845.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MUC6 MUTATED 1 7 6
MUC6 WILD-TYPE 269 406 268
'MUC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 1

Table S846.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MUC6 MUTATED 0 2 7 5 0
MUC6 WILD-TYPE 152 172 383 120 116

Figure S138.  Get High-res Image Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S847.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MUC6 MUTATED 3 0 3
MUC6 WILD-TYPE 245 217 184
'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S848.  Gene #75: 'MUC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MUC6 MUTATED 3 0 2 0 0 1
MUC6 WILD-TYPE 112 63 187 117 108 59
'PSIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S849.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PSIP1 MUTATED 0 0 0 1 1 1 0 1
PSIP1 WILD-TYPE 21 38 114 96 107 72 19 38
'PSIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S850.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PSIP1 MUTATED 0 1 1 1 1
PSIP1 WILD-TYPE 96 151 115 88 55
'PSIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S851.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PSIP1 MUTATED 4 1 2 1 0
PSIP1 WILD-TYPE 363 225 89 240 37
'PSIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S852.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PSIP1 MUTATED 0 2 1 1 1
PSIP1 WILD-TYPE 116 179 156 82 110
'PSIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S853.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PSIP1 MUTATED 1 1 2
PSIP1 WILD-TYPE 145 128 116
'PSIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S854.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PSIP1 MUTATED 1 1 1 1 0
PSIP1 WILD-TYPE 58 108 89 103 31
'PSIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S855.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PSIP1 MUTATED 1 0 3 2 1 1 0
PSIP1 WILD-TYPE 178 135 212 154 224 47 15
'PSIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S856.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PSIP1 MUTATED 1 1 2 3 1 0
PSIP1 WILD-TYPE 167 221 186 169 170 52
'PSIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S857.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PSIP1 MUTATED 2 5 0
PSIP1 WILD-TYPE 268 408 274
'PSIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S858.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PSIP1 MUTATED 1 2 3 0 1
PSIP1 WILD-TYPE 151 172 387 125 115
'PSIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S859.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PSIP1 MUTATED 2 1 1
PSIP1 WILD-TYPE 246 216 186
'PSIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S860.  Gene #76: 'PSIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PSIP1 MUTATED 0 1 2 0 0 1
PSIP1 WILD-TYPE 115 62 187 117 108 59
'PCNXL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S861.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PCNXL2 MUTATED 0 1 5 2 3 2 0 0
PCNXL2 WILD-TYPE 21 37 109 95 105 71 19 39
'PCNXL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S862.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PCNXL2 MUTATED 3 3 3 2 2
PCNXL2 WILD-TYPE 93 149 113 87 54
'PCNXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S863.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PCNXL2 MUTATED 6 4 3 7 1
PCNXL2 WILD-TYPE 361 222 88 234 36
'PCNXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S864.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PCNXL2 MUTATED 3 4 4 2 1
PCNXL2 WILD-TYPE 113 177 153 81 110
'PCNXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S865.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PCNXL2 MUTATED 4 4 1
PCNXL2 WILD-TYPE 142 125 117
'PCNXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S866.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PCNXL2 MUTATED 1 1 1 5 1
PCNXL2 WILD-TYPE 58 108 89 99 30
'PCNXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S867.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PCNXL2 MUTATED 4 2 5 3 7 0 0
PCNXL2 WILD-TYPE 175 133 210 153 218 48 15
'PCNXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S868.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PCNXL2 MUTATED 4 2 5 7 3 0
PCNXL2 WILD-TYPE 164 220 183 165 168 52
'PCNXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S869.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PCNXL2 MUTATED 4 11 6
PCNXL2 WILD-TYPE 266 402 268
'PCNXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S870.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PCNXL2 MUTATED 2 6 9 2 2
PCNXL2 WILD-TYPE 150 168 381 123 114
'PCNXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S871.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PCNXL2 MUTATED 5 2 3
PCNXL2 WILD-TYPE 243 215 184
'PCNXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S872.  Gene #77: 'PCNXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PCNXL2 MUTATED 3 1 4 0 2 0
PCNXL2 WILD-TYPE 112 62 185 117 106 60
'SLC35B2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S873.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SLC35B2 MUTATED 0 0 1 1 1 1 0 0
SLC35B2 WILD-TYPE 21 38 113 96 107 72 19 39
'SLC35B2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S874.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SLC35B2 MUTATED 1 0 2 0 1
SLC35B2 WILD-TYPE 95 152 114 89 55
'SLC35B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S875.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SLC35B2 MUTATED 3 1 1 2 0
SLC35B2 WILD-TYPE 364 225 90 239 37
'SLC35B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S876.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SLC35B2 MUTATED 2 2 0
SLC35B2 WILD-TYPE 144 127 118
'SLC35B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S877.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SLC35B2 MUTATED 1 0 2 1 0
SLC35B2 WILD-TYPE 58 109 88 103 31
'SLC35B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S878.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SLC35B2 MUTATED 1 1 1 2 2 0 0
SLC35B2 WILD-TYPE 178 134 214 154 223 48 15
'SLC35B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S879.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SLC35B2 MUTATED 1 1 2 1 1 1
SLC35B2 WILD-TYPE 167 221 186 171 170 51
'SLC35B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S880.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SLC35B2 MUTATED 1 3 3
SLC35B2 WILD-TYPE 269 410 271
'SLC35B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S881.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SLC35B2 MUTATED 0 2 4 0 1
SLC35B2 WILD-TYPE 152 172 386 125 115
'SLC35B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S882.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SLC35B2 MUTATED 2 1 2
SLC35B2 WILD-TYPE 246 216 185
'SLC35B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S883.  Gene #78: 'SLC35B2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SLC35B2 MUTATED 0 0 2 1 1 1
SLC35B2 WILD-TYPE 115 63 187 116 107 59
'ANGPT4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S884.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ANGPT4 MUTATED 0 1 1 1 0 0 1 0
ANGPT4 WILD-TYPE 21 37 113 96 108 73 18 39
'ANGPT4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S885.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ANGPT4 MUTATED 1 1 1 1 0
ANGPT4 WILD-TYPE 95 151 115 88 56
'ANGPT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S886.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ANGPT4 MUTATED 2 2 3 3 0
ANGPT4 WILD-TYPE 365 224 88 238 37
'ANGPT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S887.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ANGPT4 MUTATED 0 0 3 1 2
ANGPT4 WILD-TYPE 116 181 154 82 109
'ANGPT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S888.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ANGPT4 MUTATED 1 2 0
ANGPT4 WILD-TYPE 145 127 118
'ANGPT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S889.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ANGPT4 MUTATED 0 0 1 2 0
ANGPT4 WILD-TYPE 59 109 89 102 31
'ANGPT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00774 (Fisher's exact test), Q value = 1

Table S890.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ANGPT4 MUTATED 1 1 0 7 1 0 0
ANGPT4 WILD-TYPE 178 134 215 149 224 48 15

Figure S139.  Get High-res Image Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ANGPT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S891.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ANGPT4 MUTATED 1 2 0 4 1 2
ANGPT4 WILD-TYPE 167 220 188 168 170 50
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S892.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ANGPT4 MUTATED 3 2 5
ANGPT4 WILD-TYPE 267 411 269
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S893.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ANGPT4 MUTATED 1 1 5 0 3
ANGPT4 WILD-TYPE 151 173 385 125 113
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S894.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ANGPT4 MUTATED 2 2 3
ANGPT4 WILD-TYPE 246 215 184
'ANGPT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S895.  Gene #79: 'ANGPT4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ANGPT4 MUTATED 0 0 3 1 1 2
ANGPT4 WILD-TYPE 115 63 186 116 107 58
'MKL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S896.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MKL1 MUTATED 0 0 2 0 1 1 0 0
MKL1 WILD-TYPE 21 38 112 97 107 72 19 39
'MKL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S897.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MKL1 MUTATED 2 1 1 0 0
MKL1 WILD-TYPE 94 151 115 89 56
'MKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S898.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MKL1 MUTATED 2 3 0 0 0
MKL1 WILD-TYPE 365 223 91 241 37
'MKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S899.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MKL1 MUTATED 2 1 0
MKL1 WILD-TYPE 144 128 118
'MKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0991 (Fisher's exact test), Q value = 1

Table S900.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MKL1 MUTATED 0 0 0 2 1
MKL1 WILD-TYPE 59 109 90 102 30
'MKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S901.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MKL1 MUTATED 0 0 1 2 2 0 0
MKL1 WILD-TYPE 179 135 214 154 223 48 15
'MKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 1

Table S902.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MKL1 MUTATED 0 0 0 2 2 1
MKL1 WILD-TYPE 168 222 188 170 169 51
'MKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S903.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MKL1 MUTATED 0 3 2
MKL1 WILD-TYPE 270 410 272
'MKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S904.  Gene #80: 'MKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MKL1 MUTATED 0 1 3 0 1
MKL1 WILD-TYPE 152 173 387 125 115
'NBPF9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S905.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NBPF9 MUTATED 1 0 1 1 2 0 0 0
NBPF9 WILD-TYPE 20 38 113 96 106 73 19 39
'NBPF9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S906.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NBPF9 MUTATED 0 1 2 1 1
NBPF9 WILD-TYPE 96 151 114 88 55
'NBPF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S907.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
NBPF9 MUTATED 2 1 1 1 0
NBPF9 WILD-TYPE 365 225 90 240 37
'NBPF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S908.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NBPF9 MUTATED 2 1 2
NBPF9 WILD-TYPE 144 128 116
'NBPF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S909.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NBPF9 MUTATED 1 2 1 1 0
NBPF9 WILD-TYPE 58 107 89 103 31
'NBPF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S910.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
NBPF9 MUTATED 1 0 3 0 1 0 0
NBPF9 WILD-TYPE 178 135 212 156 224 48 15
'NBPF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S911.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
NBPF9 MUTATED 1 0 1 3 0 0
NBPF9 WILD-TYPE 167 222 187 169 171 52
'NBPF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S912.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
NBPF9 MUTATED 0 3 2
NBPF9 WILD-TYPE 270 410 272
'NBPF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S913.  Gene #81: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
NBPF9 MUTATED 0 1 2 0 2
NBPF9 WILD-TYPE 152 173 388 125 114
'PRICKLE3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S914.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PRICKLE3 MUTATED 1 0 0 3 1 2 0 0
PRICKLE3 WILD-TYPE 20 38 114 94 107 71 19 39
'PRICKLE3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 1

Table S915.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PRICKLE3 MUTATED 0 0 2 3 2
PRICKLE3 WILD-TYPE 96 152 114 86 54

Figure S140.  Get High-res Image Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PRICKLE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S916.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PRICKLE3 MUTATED 4 2 1 3 0
PRICKLE3 WILD-TYPE 363 224 90 238 37
'PRICKLE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 1

Table S917.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PRICKLE3 MUTATED 0 1 1 3 0
PRICKLE3 WILD-TYPE 116 180 156 80 111

Figure S141.  Get High-res Image Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PRICKLE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S918.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PRICKLE3 MUTATED 4 1 2
PRICKLE3 WILD-TYPE 142 128 116
'PRICKLE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S919.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PRICKLE3 MUTATED 0 3 2 1 1
PRICKLE3 WILD-TYPE 59 106 88 103 30
'PRICKLE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S920.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PRICKLE3 MUTATED 3 0 2 4 1 1 0
PRICKLE3 WILD-TYPE 176 135 213 152 224 47 15
'PRICKLE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S921.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PRICKLE3 MUTATED 3 1 1 4 1 1
PRICKLE3 WILD-TYPE 165 221 187 168 170 51
'PRICKLE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S922.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PRICKLE3 MUTATED 2 6 3
PRICKLE3 WILD-TYPE 268 407 271
'PRICKLE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S923.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PRICKLE3 MUTATED 1 1 4 3 2
PRICKLE3 WILD-TYPE 151 173 386 122 114
'PRICKLE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S924.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PRICKLE3 MUTATED 2 1 3
PRICKLE3 WILD-TYPE 246 216 184
'PRICKLE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S925.  Gene #82: 'PRICKLE3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PRICKLE3 MUTATED 2 0 0 1 1 2
PRICKLE3 WILD-TYPE 113 63 189 116 107 58
'CCDC82 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S926.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CCDC82 MUTATED 0 0 3 0 0 1 0 0
CCDC82 WILD-TYPE 21 38 111 97 108 72 19 39
'CCDC82 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 1

Table S927.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CCDC82 MUTATED 3 0 1 0 0
CCDC82 WILD-TYPE 93 152 115 89 56
'CCDC82 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S928.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CCDC82 MUTATED 2 1 0 3 0
CCDC82 WILD-TYPE 365 225 91 238 37
'CCDC82 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S929.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CCDC82 MUTATED 4 0 0
CCDC82 WILD-TYPE 142 129 118

Figure S142.  Get High-res Image Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CCDC82 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S930.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CCDC82 MUTATED 0 0 1 3 0
CCDC82 WILD-TYPE 59 109 89 101 31
'CCDC82 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S931.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CCDC82 MUTATED 1 0 0 1 4 0 0
CCDC82 WILD-TYPE 178 135 215 155 221 48 15
'CCDC82 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00539 (Fisher's exact test), Q value = 1

Table S932.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CCDC82 MUTATED 1 0 0 5 0 0
CCDC82 WILD-TYPE 167 222 188 167 171 52

Figure S143.  Get High-res Image Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCDC82 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S933.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CCDC82 MUTATED 0 4 2
CCDC82 WILD-TYPE 270 409 272
'CCDC82 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S934.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CCDC82 MUTATED 0 0 5 1 0
CCDC82 WILD-TYPE 152 174 385 124 116
'CCDC82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S935.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CCDC82 MUTATED 1 0 3
CCDC82 WILD-TYPE 247 217 184
'CCDC82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S936.  Gene #83: 'CCDC82 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CCDC82 MUTATED 1 0 2 1 0 0
CCDC82 WILD-TYPE 114 63 187 116 108 60
'CXCR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S937.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CXCR3 MUTATED 0 0 1 1 0 0 0 1
CXCR3 WILD-TYPE 21 38 113 96 108 73 19 38
'CXCR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S938.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CXCR3 MUTATED 1 1 0 1 0
CXCR3 WILD-TYPE 95 151 116 88 56
'CXCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S939.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CXCR3 MUTATED 3 0 1 1 1
CXCR3 WILD-TYPE 364 226 90 240 36
'CXCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S940.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CXCR3 MUTATED 0 1 1 1 0
CXCR3 WILD-TYPE 116 180 156 82 111
'CXCR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S941.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CXCR3 MUTATED 1 1 1
CXCR3 WILD-TYPE 145 128 117
'CXCR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S942.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CXCR3 MUTATED 0 1 1 1 0
CXCR3 WILD-TYPE 59 108 89 103 31
'CXCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S943.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CXCR3 MUTATED 1 1 1 1 1 1 0
CXCR3 WILD-TYPE 178 134 214 155 224 47 15
'CXCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S944.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CXCR3 MUTATED 1 2 1 0 1 1
CXCR3 WILD-TYPE 167 220 187 172 170 51
'CXCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S945.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CXCR3 MUTATED 2 2 2
CXCR3 WILD-TYPE 268 411 272
'CXCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S946.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CXCR3 MUTATED 2 0 3 1 0
CXCR3 WILD-TYPE 150 174 387 124 116
'CXCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S947.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CXCR3 MUTATED 1 2 1
CXCR3 WILD-TYPE 247 215 186
'CXCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S948.  Gene #84: 'CXCR3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CXCR3 MUTATED 0 1 0 2 1 0
CXCR3 WILD-TYPE 115 62 189 115 107 60
'TPP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 1

Table S949.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TPP2 MUTATED 1 0 0 0 3 0 0 0
TPP2 WILD-TYPE 20 38 114 97 105 73 19 39
'TPP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S950.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TPP2 MUTATED 1 2 1 0 0
TPP2 WILD-TYPE 95 150 115 89 56
'TPP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S951.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TPP2 MUTATED 3 3 0 2 0
TPP2 WILD-TYPE 364 223 91 239 37
'TPP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S952.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TPP2 MUTATED 2 2 1 0 0
TPP2 WILD-TYPE 114 179 156 83 111
'TPP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S953.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TPP2 MUTATED 2 0 4 1 1 0 0
TPP2 WILD-TYPE 177 135 211 155 224 48 15
'TPP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S954.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TPP2 MUTATED 2 0 1 3 2 0
TPP2 WILD-TYPE 166 222 187 169 169 52
'TPP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S955.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TPP2 MUTATED 1 5 2
TPP2 WILD-TYPE 269 408 272
'TPP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S956.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TPP2 MUTATED 1 2 3 2 0
TPP2 WILD-TYPE 151 172 387 123 116
'TPP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S957.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TPP2 MUTATED 2 1 3
TPP2 WILD-TYPE 246 216 184
'TPP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S958.  Gene #85: 'TPP2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TPP2 MUTATED 2 0 2 1 1 0
TPP2 WILD-TYPE 113 63 187 116 107 60
'C15ORF39 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S959.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
C15ORF39 MUTATED 0 0 0 2 1 2 0 0
C15ORF39 WILD-TYPE 21 38 114 95 107 71 19 39
'C15ORF39 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S960.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
C15ORF39 MUTATED 0 1 2 2 0
C15ORF39 WILD-TYPE 96 151 114 87 56
'C15ORF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00585 (Fisher's exact test), Q value = 1

Table S961.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
C15ORF39 MUTATED 0 1 0 6 1
C15ORF39 WILD-TYPE 367 225 91 235 36

Figure S144.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C15ORF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 1

Table S962.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
C15ORF39 MUTATED 4 1 0 0 0
C15ORF39 WILD-TYPE 112 180 157 83 111

Figure S145.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C15ORF39 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S963.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
C15ORF39 MUTATED 2 0 1
C15ORF39 WILD-TYPE 144 129 117
'C15ORF39 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S964.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
C15ORF39 MUTATED 0 1 2 0 0
C15ORF39 WILD-TYPE 59 108 88 104 31
'C15ORF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 1

Table S965.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
C15ORF39 MUTATED 6 0 1 2 0 0 0
C15ORF39 WILD-TYPE 173 135 214 154 225 48 15

Figure S146.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C15ORF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00111 (Fisher's exact test), Q value = 1

Table S966.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
C15ORF39 MUTATED 6 0 0 2 0 1
C15ORF39 WILD-TYPE 162 222 188 170 171 51

Figure S147.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C15ORF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 1

Table S967.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
C15ORF39 MUTATED 0 2 6
C15ORF39 WILD-TYPE 270 411 268

Figure S148.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'C15ORF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 1

Table S968.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
C15ORF39 MUTATED 0 0 2 4 2
C15ORF39 WILD-TYPE 152 174 388 121 114

Figure S149.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C15ORF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 1

Table S969.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
C15ORF39 MUTATED 0 0 5
C15ORF39 WILD-TYPE 248 217 182

Figure S150.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C15ORF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 1

Table S970.  Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
C15ORF39 MUTATED 5 0 0 0 0 0
C15ORF39 WILD-TYPE 110 63 189 117 108 60

Figure S151.  Get High-res Image Gene #86: 'C15ORF39 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S971.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SDC1 MUTATED 2 0 0 1 0
SDC1 WILD-TYPE 365 226 91 240 37
'SDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S972.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SDC1 MUTATED 0 0 1 2 0 0 0
SDC1 WILD-TYPE 179 135 214 154 225 48 15
'SDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00824 (Fisher's exact test), Q value = 1

Table S973.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SDC1 MUTATED 0 1 0 0 0 2
SDC1 WILD-TYPE 168 221 188 172 171 50

Figure S152.  Get High-res Image Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S974.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SDC1 MUTATED 1 2 0
SDC1 WILD-TYPE 269 411 274
'SDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S975.  Gene #87: 'SDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SDC1 MUTATED 1 0 2 0 0
SDC1 WILD-TYPE 151 174 388 125 116
'CASP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S976.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CASP8 MUTATED 0 0 1 0 3 0 0 1
CASP8 WILD-TYPE 21 38 113 97 105 73 19 38
'CASP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S977.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CASP8 MUTATED 1 3 0 0 1
CASP8 WILD-TYPE 95 149 116 89 55
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S978.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CASP8 MUTATED 4 1 4 3 0
CASP8 WILD-TYPE 363 225 87 238 37
'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S979.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CASP8 MUTATED 2 3 0 2 2
CASP8 WILD-TYPE 114 178 157 81 109
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S980.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CASP8 MUTATED 1 3 1
CASP8 WILD-TYPE 145 126 117
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S981.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CASP8 MUTATED 2 1 1 1 0
CASP8 WILD-TYPE 57 108 89 103 31
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S982.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CASP8 MUTATED 3 1 6 0 1 1 0
CASP8 WILD-TYPE 176 134 209 156 224 47 15
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S983.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CASP8 MUTATED 3 3 4 2 0 0
CASP8 WILD-TYPE 165 219 184 170 171 52
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S984.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CASP8 MUTATED 5 4 3
CASP8 WILD-TYPE 265 409 271
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S985.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CASP8 MUTATED 1 3 3 3 2
CASP8 WILD-TYPE 151 171 387 122 114
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S986.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CASP8 MUTATED 2 3 3
CASP8 WILD-TYPE 246 214 184
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S987.  Gene #88: 'CASP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CASP8 MUTATED 3 1 2 0 2 0
CASP8 WILD-TYPE 112 62 187 117 106 60
'TNRC6B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S988.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TNRC6B MUTATED 0 1 1 4 3 0 0 0
TNRC6B WILD-TYPE 21 37 113 93 105 73 19 39
'TNRC6B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S989.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TNRC6B MUTATED 1 3 0 4 1
TNRC6B WILD-TYPE 95 149 116 85 55
'TNRC6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S990.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TNRC6B MUTATED 8 1 3 5 0
TNRC6B WILD-TYPE 359 225 88 236 37
'TNRC6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S991.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TNRC6B MUTATED 2 4 5 2 2
TNRC6B WILD-TYPE 114 177 152 81 109
'TNRC6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S992.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TNRC6B MUTATED 4 1 2
TNRC6B WILD-TYPE 142 128 116
'TNRC6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S993.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TNRC6B MUTATED 1 1 4 1 0
TNRC6B WILD-TYPE 58 108 86 103 31
'TNRC6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S994.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TNRC6B MUTATED 5 2 7 2 2 0 0
TNRC6B WILD-TYPE 174 133 208 154 223 48 15
'TNRC6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S995.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TNRC6B MUTATED 5 4 2 5 1 1
TNRC6B WILD-TYPE 163 218 186 167 170 51
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S996.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TNRC6B MUTATED 5 9 4
TNRC6B WILD-TYPE 265 404 270
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S997.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TNRC6B MUTATED 3 3 7 4 1
TNRC6B WILD-TYPE 149 171 383 121 115
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S998.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TNRC6B MUTATED 4 3 3
TNRC6B WILD-TYPE 244 214 184
'TNRC6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S999.  Gene #89: 'TNRC6B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TNRC6B MUTATED 2 1 3 1 1 2
TNRC6B WILD-TYPE 113 62 186 116 107 58
'IRS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1000.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
IRS4 MUTATED 1 2 1 1 0 1 0 1
IRS4 WILD-TYPE 20 36 113 96 108 72 19 38
'IRS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1001.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
IRS4 MUTATED 1 4 1 1 0
IRS4 WILD-TYPE 95 148 115 88 56
'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1002.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
IRS4 MUTATED 2 2 1 6 0
IRS4 WILD-TYPE 365 224 90 235 37
'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1003.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
IRS4 MUTATED 3 1 2 1 2
IRS4 WILD-TYPE 113 180 155 82 109
'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1004.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
IRS4 MUTATED 3 2 0
IRS4 WILD-TYPE 143 127 118
'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S1005.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
IRS4 MUTATED 1 1 1 2 0
IRS4 WILD-TYPE 58 108 89 102 31
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S1006.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
IRS4 MUTATED 3 2 0 2 2 1 1
IRS4 WILD-TYPE 176 133 215 154 223 47 14
'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1007.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
IRS4 MUTATED 3 4 1 0 2 1
IRS4 WILD-TYPE 165 218 187 172 169 51
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1008.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
IRS4 MUTATED 2 4 4
IRS4 WILD-TYPE 268 409 270
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1009.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
IRS4 MUTATED 0 2 5 1 2
IRS4 WILD-TYPE 152 172 385 124 114
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1010.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
IRS4 MUTATED 2 1 1
IRS4 WILD-TYPE 246 216 186
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1011.  Gene #90: 'IRS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
IRS4 MUTATED 1 0 2 0 1 0
IRS4 WILD-TYPE 114 63 187 117 107 60
'RHOA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1012.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RHOA MUTATED 0 0 1 1 0 1 0 0
RHOA WILD-TYPE 21 38 113 96 108 72 19 39
'RHOA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1013.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RHOA MUTATED 1 0 1 1 0
RHOA WILD-TYPE 95 152 115 88 56
'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1014.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RHOA MUTATED 3 1 1 1 0
RHOA WILD-TYPE 364 225 90 240 37
'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1015.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RHOA MUTATED 1 0 2 1 0
RHOA WILD-TYPE 115 181 155 82 111
'RHOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1016.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RHOA MUTATED 3 0 0
RHOA WILD-TYPE 143 129 118
'RHOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1017.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RHOA MUTATED 0 0 1 1 1
RHOA WILD-TYPE 59 109 89 103 30
'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1018.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RHOA MUTATED 1 0 1 2 2 0 0
RHOA WILD-TYPE 178 135 214 154 223 48 15
'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1019.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RHOA MUTATED 1 1 0 3 0 1
RHOA WILD-TYPE 167 221 188 169 171 51
'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1020.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RHOA MUTATED 2 2 2
RHOA WILD-TYPE 268 411 272
'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S1021.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RHOA MUTATED 2 0 3 1 0
RHOA WILD-TYPE 150 174 387 124 116
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1022.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RHOA MUTATED 0 2 1
RHOA WILD-TYPE 248 215 186
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1023.  Gene #91: 'RHOA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RHOA MUTATED 0 0 1 0 2 0
RHOA WILD-TYPE 115 63 188 117 106 60
'TTPAL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1024.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TTPAL MUTATED 0 1 0 2 0 0 0 0
TTPAL WILD-TYPE 21 37 114 95 108 73 19 39
'TTPAL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1025.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TTPAL MUTATED 0 1 0 2 0
TTPAL WILD-TYPE 96 151 116 87 56
'TTPAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1026.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TTPAL MUTATED 0 1 0 3 0
TTPAL WILD-TYPE 367 225 91 238 37
'TTPAL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S1027.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TTPAL MUTATED 2 0 1
TTPAL WILD-TYPE 144 129 117
'TTPAL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S1028.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TTPAL MUTATED 0 0 2 1 0
TTPAL WILD-TYPE 59 109 88 103 31
'TTPAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1029.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TTPAL MUTATED 2 1 0 1 0 0 0
TTPAL WILD-TYPE 177 134 215 155 225 48 15
'TTPAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1030.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TTPAL MUTATED 2 2 0 0 0 0
TTPAL WILD-TYPE 166 220 188 172 171 52
'TTPAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1031.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TTPAL MUTATED 0 1 3
TTPAL WILD-TYPE 270 412 271
'TTPAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1032.  Gene #92: 'TTPAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TTPAL MUTATED 0 0 2 2 0
TTPAL WILD-TYPE 152 174 388 123 116
'MLL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1033.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLL4 MUTATED 1 1 4 2 0 1 0 1
MLL4 WILD-TYPE 20 37 110 95 108 72 19 38
'MLL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1034.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLL4 MUTATED 4 2 2 2 0
MLL4 WILD-TYPE 92 150 114 87 56
'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1035.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MLL4 MUTATED 4 3 2 4 0
MLL4 WILD-TYPE 363 223 89 237 37
'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1036.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLL4 MUTATED 0 1 2 1 0
MLL4 WILD-TYPE 116 180 155 82 111
'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1037.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MLL4 MUTATED 6 1 1
MLL4 WILD-TYPE 140 128 117
'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1038.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MLL4 MUTATED 0 1 3 4 0
MLL4 WILD-TYPE 59 108 87 100 31
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1039.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MLL4 MUTATED 2 3 0 3 4 1 0
MLL4 WILD-TYPE 177 132 215 153 221 47 15
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1040.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MLL4 MUTATED 2 3 0 5 2 1
MLL4 WILD-TYPE 166 219 188 167 169 51
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1041.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MLL4 MUTATED 1 6 6
MLL4 WILD-TYPE 269 407 268
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1042.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MLL4 MUTATED 1 0 7 1 4
MLL4 WILD-TYPE 151 174 383 124 112
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1043.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MLL4 MUTATED 4 0 3
MLL4 WILD-TYPE 244 217 184
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1044.  Gene #93: 'MLL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MLL4 MUTATED 1 1 5 0 0 0
MLL4 WILD-TYPE 114 62 184 117 108 60
'ATHL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1045.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ATHL1 MUTATED 0 0 3 1 2 0 0 0
ATHL1 WILD-TYPE 21 38 111 96 106 73 19 39
'ATHL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S1046.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ATHL1 MUTATED 3 2 0 1 0
ATHL1 WILD-TYPE 93 150 116 88 56
'ATHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 1

Table S1047.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ATHL1 MUTATED 1 2 0 6 1
ATHL1 WILD-TYPE 366 224 91 235 36
'ATHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1048.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ATHL1 MUTATED 1 1 4 1 0
ATHL1 WILD-TYPE 115 180 153 82 111
'ATHL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1049.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ATHL1 MUTATED 2 2 1
ATHL1 WILD-TYPE 144 127 117
'ATHL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1050.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ATHL1 MUTATED 0 1 1 3 0
ATHL1 WILD-TYPE 59 108 89 101 31
'ATHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1051.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ATHL1 MUTATED 2 1 2 2 3 0 0
ATHL1 WILD-TYPE 177 134 213 154 222 48 15
'ATHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 1

Table S1052.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ATHL1 MUTATED 2 0 1 6 1 0
ATHL1 WILD-TYPE 166 222 187 166 170 52

Figure S153.  Get High-res Image Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ATHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 1

Table S1053.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ATHL1 MUTATED 0 7 3
ATHL1 WILD-TYPE 270 406 271
'ATHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1054.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ATHL1 MUTATED 0 0 7 2 1
ATHL1 WILD-TYPE 152 174 383 123 115
'ATHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1055.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ATHL1 MUTATED 4 0 3
ATHL1 WILD-TYPE 244 217 184
'ATHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S1056.  Gene #94: 'ATHL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ATHL1 MUTATED 2 0 5 0 0 0
ATHL1 WILD-TYPE 113 63 184 117 108 60
'TMEM120B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1057.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TMEM120B MUTATED 0 0 0 1 1 0 1 0
TMEM120B WILD-TYPE 21 38 114 96 107 73 18 39
'TMEM120B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1058.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TMEM120B MUTATED 0 0 1 1 1
TMEM120B WILD-TYPE 96 152 115 88 55
'TMEM120B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1059.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TMEM120B MUTATED 2 1 0 2 0
TMEM120B WILD-TYPE 365 225 91 239 37
'TMEM120B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1060.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TMEM120B MUTATED 1 2 1 0 1
TMEM120B WILD-TYPE 115 179 156 83 110
'TMEM120B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S1061.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TMEM120B MUTATED 1 2 1 0 0 0 1
TMEM120B WILD-TYPE 178 133 214 156 225 48 14

Figure S154.  Get High-res Image Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TMEM120B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1062.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TMEM120B MUTATED 1 2 1 1 0 0
TMEM120B WILD-TYPE 167 220 187 171 171 52
'TMEM120B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1063.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TMEM120B MUTATED 2 2 1
TMEM120B WILD-TYPE 268 411 273
'TMEM120B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1064.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TMEM120B MUTATED 2 1 1 1 0
TMEM120B WILD-TYPE 150 173 389 124 116
'TMEM120B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1065.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TMEM120B MUTATED 0 2 2
TMEM120B WILD-TYPE 248 215 185
'TMEM120B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1066.  Gene #95: 'TMEM120B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TMEM120B MUTATED 1 0 1 0 2 0
TMEM120B WILD-TYPE 114 63 188 117 106 60
'LILRA6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1067.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
LILRA6 MUTATED 0 0 0 1 1 2 0 0
LILRA6 WILD-TYPE 21 38 114 96 107 71 19 39
'LILRA6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1068.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
LILRA6 MUTATED 0 0 2 1 1
LILRA6 WILD-TYPE 96 152 114 88 55
'LILRA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1069.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
LILRA6 MUTATED 2 2 1 1 0
LILRA6 WILD-TYPE 365 224 90 240 37
'LILRA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1070.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
LILRA6 MUTATED 1 3 0
LILRA6 WILD-TYPE 145 126 118
'LILRA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S1071.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
LILRA6 MUTATED 1 0 1 2 0
LILRA6 WILD-TYPE 58 109 89 102 31
'LILRA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S1072.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
LILRA6 MUTATED 1 1 2 1 1 0 0
LILRA6 WILD-TYPE 178 134 213 155 224 48 15
'LILRA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S1073.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
LILRA6 MUTATED 1 1 1 2 1 0
LILRA6 WILD-TYPE 167 221 187 170 170 52
'LILRA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1074.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
LILRA6 MUTATED 1 3 1
LILRA6 WILD-TYPE 269 410 273
'LILRA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1075.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
LILRA6 MUTATED 1 2 1 1 0
LILRA6 WILD-TYPE 151 172 389 124 116
'LILRA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1076.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
LILRA6 MUTATED 1 1 1
LILRA6 WILD-TYPE 247 216 186
'LILRA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1077.  Gene #96: 'LILRA6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
LILRA6 MUTATED 1 0 0 1 1 0
LILRA6 WILD-TYPE 114 63 189 116 107 60
'MLH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1078.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLH1 MUTATED 0 0 1 0 2 0 0 0
MLH1 WILD-TYPE 21 38 113 97 106 73 19 39
'MLH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1079.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLH1 MUTATED 1 2 0 0 0
MLH1 WILD-TYPE 95 150 116 89 56
'MLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1080.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MLH1 MUTATED 3 1 0 2 0
MLH1 WILD-TYPE 364 225 91 239 37
'MLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1081.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLH1 MUTATED 1 1 1 1 0
MLH1 WILD-TYPE 115 180 156 82 111
'MLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1082.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MLH1 MUTATED 1 0 2 0 3 0 0
MLH1 WILD-TYPE 178 135 213 156 222 48 15
'MLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S1083.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MLH1 MUTATED 1 0 1 3 1 0
MLH1 WILD-TYPE 167 222 187 169 170 52
'MLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1084.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MLH1 MUTATED 0 5 1
MLH1 WILD-TYPE 270 408 273
'MLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1085.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MLH1 MUTATED 0 1 4 1 0
MLH1 WILD-TYPE 152 173 386 124 116
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1086.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MLH1 MUTATED 2 1 1
MLH1 WILD-TYPE 246 216 186
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S1087.  Gene #97: 'MLH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MLH1 MUTATED 1 0 2 1 0 0
MLH1 WILD-TYPE 114 63 187 116 108 60
'NUP93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 1

Table S1088.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
NUP93 MUTATED 0 0 0 3 1
NUP93 WILD-TYPE 367 226 91 238 36

Figure S155.  Get High-res Image Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NUP93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1089.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NUP93 MUTATED 2 0 1 0 1
NUP93 WILD-TYPE 114 181 156 83 110
'NUP93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S1090.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
NUP93 MUTATED 2 0 0 1 0 0 1
NUP93 WILD-TYPE 177 135 215 155 225 48 14

Figure S156.  Get High-res Image Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NUP93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1091.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
NUP93 MUTATED 1 1 0 2 0 0
NUP93 WILD-TYPE 167 221 188 170 171 52
'NUP93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1092.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
NUP93 MUTATED 0 2 1
NUP93 WILD-TYPE 270 411 273
'NUP93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1093.  Gene #98: 'NUP93 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
NUP93 MUTATED 0 0 3 0 0
NUP93 WILD-TYPE 152 174 387 125 116
'ALDH1L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1094.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ALDH1L1 MUTATED 0 1 2 1 0 1 0 1
ALDH1L1 WILD-TYPE 21 37 112 96 108 72 19 38
'ALDH1L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S1095.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ALDH1L1 MUTATED 2 2 1 1 0
ALDH1L1 WILD-TYPE 94 150 115 88 56
'ALDH1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1096.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ALDH1L1 MUTATED 1 3 1 4 0
ALDH1L1 WILD-TYPE 366 223 90 237 37
'ALDH1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1097.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ALDH1L1 MUTATED 2 1 3 1 0
ALDH1L1 WILD-TYPE 114 180 154 82 111
'ALDH1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1098.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ALDH1L1 MUTATED 1 1 2
ALDH1L1 WILD-TYPE 145 128 116
'ALDH1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1099.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ALDH1L1 MUTATED 0 3 0 1 0
ALDH1L1 WILD-TYPE 59 106 90 103 31
'ALDH1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1100.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ALDH1L1 MUTATED 2 2 0 3 2 0 0
ALDH1L1 WILD-TYPE 177 133 215 153 223 48 15
'ALDH1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1101.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ALDH1L1 MUTATED 2 2 0 3 1 1
ALDH1L1 WILD-TYPE 166 220 188 169 170 51
'ALDH1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1102.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ALDH1L1 MUTATED 2 4 3
ALDH1L1 WILD-TYPE 268 409 271
'ALDH1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1103.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ALDH1L1 MUTATED 0 3 4 2 0
ALDH1L1 WILD-TYPE 152 171 386 123 116
'ALDH1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1104.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ALDH1L1 MUTATED 2 0 2
ALDH1L1 WILD-TYPE 246 217 185
'ALDH1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S1105.  Gene #99: 'ALDH1L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ALDH1L1 MUTATED 1 0 3 0 0 0
ALDH1L1 WILD-TYPE 114 63 186 117 108 60
'LRIG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S1106.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
LRIG2 MUTATED 0 0 3 1 0 0 0 0
LRIG2 WILD-TYPE 21 38 111 96 108 73 19 39
'LRIG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 1

Table S1107.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
LRIG2 MUTATED 3 0 0 1 0
LRIG2 WILD-TYPE 93 152 116 88 56

Figure S157.  Get High-res Image Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'LRIG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1108.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
LRIG2 MUTATED 1 3 0 2 1
LRIG2 WILD-TYPE 366 223 91 239 36
'LRIG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1109.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
LRIG2 MUTATED 2 1 1 0 0
LRIG2 WILD-TYPE 114 180 156 83 111
'LRIG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1110.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
LRIG2 MUTATED 1 3 0
LRIG2 WILD-TYPE 145 126 118
'LRIG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S1111.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
LRIG2 MUTATED 0 0 1 3 0
LRIG2 WILD-TYPE 59 109 89 101 31
'LRIG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S1112.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
LRIG2 MUTATED 1 0 0 2 4 0 0
LRIG2 WILD-TYPE 178 135 215 154 221 48 15
'LRIG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1113.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
LRIG2 MUTATED 1 1 0 1 3 1
LRIG2 WILD-TYPE 167 221 188 171 168 51
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1114.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
LRIG2 MUTATED 1 3 3
LRIG2 WILD-TYPE 269 410 271
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S1115.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
LRIG2 MUTATED 1 1 4 1 0
LRIG2 WILD-TYPE 151 173 386 124 116
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1116.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
LRIG2 MUTATED 2 0 1
LRIG2 WILD-TYPE 246 217 186
'LRIG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1117.  Gene #100: 'LRIG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
LRIG2 MUTATED 0 0 2 0 0 1
LRIG2 WILD-TYPE 115 63 187 117 108 59
'CCDC78 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S1118.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CCDC78 MUTATED 1 3 0 1 0
CCDC78 WILD-TYPE 366 223 91 240 37
'CCDC78 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1119.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CCDC78 MUTATED 0 2 2 0 0
CCDC78 WILD-TYPE 116 179 155 83 111
'CCDC78 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S1120.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CCDC78 MUTATED 0 0 1 2 2 0 0
CCDC78 WILD-TYPE 179 135 214 154 223 48 15
'CCDC78 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1121.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CCDC78 MUTATED 0 0 1 2 1 1
CCDC78 WILD-TYPE 168 222 187 170 170 51
'CCDC78 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1122.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CCDC78 MUTATED 1 3 1
CCDC78 WILD-TYPE 269 410 273
'CCDC78 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1123.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CCDC78 MUTATED 1 1 2 0 1
CCDC78 WILD-TYPE 151 173 388 125 115
'CCDC78 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1124.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CCDC78 MUTATED 3 1 1
CCDC78 WILD-TYPE 245 216 186
'CCDC78 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1125.  Gene #101: 'CCDC78 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CCDC78 MUTATED 1 0 2 0 1 1
CCDC78 WILD-TYPE 114 63 187 117 107 59
'GAL3ST1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1126.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GAL3ST1 MUTATED 1 2 0 2 0
GAL3ST1 WILD-TYPE 366 224 91 239 37
'GAL3ST1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1127.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GAL3ST1 MUTATED 1 0 1 0 1
GAL3ST1 WILD-TYPE 115 181 156 83 110
'GAL3ST1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1128.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GAL3ST1 MUTATED 1 1 0 0 3 0 0
GAL3ST1 WILD-TYPE 178 134 215 156 222 48 15
'GAL3ST1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1129.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GAL3ST1 MUTATED 1 2 0 1 1 0
GAL3ST1 WILD-TYPE 167 220 188 171 170 52
'GAL3ST1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S1130.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GAL3ST1 MUTATED 3 1 1
GAL3ST1 WILD-TYPE 267 412 273
'GAL3ST1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S1131.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GAL3ST1 MUTATED 1 1 2 1 0
GAL3ST1 WILD-TYPE 151 173 388 124 116
'GAL3ST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1132.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
GAL3ST1 MUTATED 0 2 1
GAL3ST1 WILD-TYPE 248 215 186
'GAL3ST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S1133.  Gene #102: 'GAL3ST1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
GAL3ST1 MUTATED 1 0 0 1 1 0
GAL3ST1 WILD-TYPE 114 63 189 116 107 60
'FAM20C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S1134.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FAM20C MUTATED 1 1 1 1 0
FAM20C WILD-TYPE 366 225 90 240 37
'FAM20C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S1135.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FAM20C MUTATED 1 1 0 1 1 0 0
FAM20C WILD-TYPE 178 134 215 155 224 48 15
'FAM20C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S1136.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FAM20C MUTATED 1 0 1 0 1 1
FAM20C WILD-TYPE 167 222 187 172 170 51
'FAM20C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1137.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FAM20C MUTATED 1 1 2
FAM20C WILD-TYPE 269 412 272
'FAM20C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1138.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FAM20C MUTATED 0 0 3 1 0
FAM20C WILD-TYPE 152 174 387 124 116
'FAM20C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S1139.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
FAM20C MUTATED 1 0 2
FAM20C WILD-TYPE 247 217 185
'FAM20C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S1140.  Gene #103: 'FAM20C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
FAM20C MUTATED 1 1 0 1 0 0
FAM20C WILD-TYPE 114 62 189 116 108 60
'RCC1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S1141.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RCC1 MUTATED 0 0 1 2 0 0 0 0
RCC1 WILD-TYPE 21 38 113 95 108 73 19 39
'RCC1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1142.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RCC1 MUTATED 1 0 0 2 0
RCC1 WILD-TYPE 95 152 116 87 56
'RCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S1143.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RCC1 MUTATED 1 0 0 1 1
RCC1 WILD-TYPE 366 226 91 240 36
'RCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1144.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RCC1 MUTATED 2 0 0 0 1 0 0
RCC1 WILD-TYPE 177 135 215 156 224 48 15
'RCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1145.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RCC1 MUTATED 2 1 0 0 0 0
RCC1 WILD-TYPE 166 221 188 172 171 52
'RCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1146.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RCC1 MUTATED 1 1 1
RCC1 WILD-TYPE 269 412 273
'RCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1147.  Gene #104: 'RCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RCC1 MUTATED 1 0 1 0 1
RCC1 WILD-TYPE 151 174 389 125 115
'SPTAN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1148.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SPTAN1 MUTATED 0 0 0 2 2 1 0 0
SPTAN1 WILD-TYPE 21 38 114 95 106 72 19 39
'SPTAN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1149.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SPTAN1 MUTATED 0 2 1 2 0
SPTAN1 WILD-TYPE 96 150 115 87 56
'SPTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S1150.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SPTAN1 MUTATED 2 3 1 4 0
SPTAN1 WILD-TYPE 365 223 90 237 37
'SPTAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1151.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SPTAN1 MUTATED 2 1 3 1 2
SPTAN1 WILD-TYPE 114 180 154 82 109
'SPTAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1152.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SPTAN1 MUTATED 3 0 0
SPTAN1 WILD-TYPE 143 129 118
'SPTAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 1

Table S1153.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SPTAN1 MUTATED 0 0 2 0 1
SPTAN1 WILD-TYPE 59 109 88 104 30

Figure S158.  Get High-res Image Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SPTAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1154.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SPTAN1 MUTATED 4 1 1 4 0 0 0
SPTAN1 WILD-TYPE 175 134 214 152 225 48 15
'SPTAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1155.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SPTAN1 MUTATED 4 1 0 3 1 1
SPTAN1 WILD-TYPE 164 221 188 169 170 51
'SPTAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 1

Table S1156.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SPTAN1 MUTATED 0 7 4
SPTAN1 WILD-TYPE 270 406 270
'SPTAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1157.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SPTAN1 MUTATED 0 2 5 3 1
SPTAN1 WILD-TYPE 152 172 385 122 115
'SPTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S1158.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SPTAN1 MUTATED 2 1 5
SPTAN1 WILD-TYPE 246 216 182
'SPTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1159.  Gene #105: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SPTAN1 MUTATED 4 0 2 1 0 1
SPTAN1 WILD-TYPE 111 63 187 116 108 59
'CHD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1160.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CHD4 MUTATED 0 2 0 2 2 1 1 1
CHD4 WILD-TYPE 21 36 114 95 106 72 18 38
'CHD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1161.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CHD4 MUTATED 0 5 2 2 0
CHD4 WILD-TYPE 96 147 114 87 56
'CHD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1162.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CHD4 MUTATED 11 2 2 4 0
CHD4 WILD-TYPE 356 224 89 237 37
'CHD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 1

Table S1163.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CHD4 MUTATED 1 1 5 4 4
CHD4 WILD-TYPE 115 180 152 79 107
'CHD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1164.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CHD4 MUTATED 3 0 3
CHD4 WILD-TYPE 143 129 115
'CHD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1165.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CHD4 MUTATED 0 2 2 1 1
CHD4 WILD-TYPE 59 107 88 103 30
'CHD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 1

Table S1166.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CHD4 MUTATED 3 5 6 4 0 0 1
CHD4 WILD-TYPE 176 130 209 152 225 48 14

Figure S159.  Get High-res Image Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CHD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1167.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CHD4 MUTATED 3 6 4 6 0 0
CHD4 WILD-TYPE 165 216 184 166 171 52
'CHD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S1168.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CHD4 MUTATED 9 7 3
CHD4 WILD-TYPE 261 406 271
'CHD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0908 (Fisher's exact test), Q value = 1

Table S1169.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CHD4 MUTATED 7 3 6 3 0
CHD4 WILD-TYPE 145 171 384 122 116
'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1170.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CHD4 MUTATED 4 6 2
CHD4 WILD-TYPE 244 211 185
'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1171.  Gene #106: 'CHD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CHD4 MUTATED 1 1 5 0 5 0
CHD4 WILD-TYPE 114 62 184 117 103 60
'ZFP36L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1172.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZFP36L2 MUTATED 0 0 1 1 0 1 1 0
ZFP36L2 WILD-TYPE 21 38 113 96 108 72 18 39
'ZFP36L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1173.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZFP36L2 MUTATED 1 1 1 1 0
ZFP36L2 WILD-TYPE 95 151 115 88 56
'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 1

Table S1174.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZFP36L2 MUTATED 1 1 1 2 2
ZFP36L2 WILD-TYPE 366 225 90 239 35

Figure S160.  Get High-res Image Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1175.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZFP36L2 MUTATED 1 1 3 0 0
ZFP36L2 WILD-TYPE 115 180 154 83 111
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1176.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZFP36L2 MUTATED 1 1 1
ZFP36L2 WILD-TYPE 145 128 117
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1177.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZFP36L2 MUTATED 0 1 1 1 0
ZFP36L2 WILD-TYPE 59 108 89 103 31
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1178.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZFP36L2 MUTATED 1 0 2 2 2 0 0
ZFP36L2 WILD-TYPE 178 135 213 154 223 48 15
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1179.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZFP36L2 MUTATED 1 0 1 3 2 0
ZFP36L2 WILD-TYPE 167 222 187 169 169 52
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1180.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZFP36L2 MUTATED 2 4 1
ZFP36L2 WILD-TYPE 268 409 273
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S1181.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZFP36L2 MUTATED 1 1 4 1 0
ZFP36L2 WILD-TYPE 151 173 386 124 116
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1182.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ZFP36L2 MUTATED 2 2 1
ZFP36L2 WILD-TYPE 246 215 186
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1183.  Gene #107: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ZFP36L2 MUTATED 1 0 2 1 1 0
ZFP36L2 WILD-TYPE 114 63 187 116 107 60
'STAG2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1184.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
STAG2 MUTATED 0 0 0 1 3 2 1 0
STAG2 WILD-TYPE 21 38 114 96 105 71 18 39
'STAG2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S1185.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
STAG2 MUTATED 0 1 3 1 2
STAG2 WILD-TYPE 96 151 113 88 54
'STAG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1186.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
STAG2 MUTATED 5 2 0 4 2
STAG2 WILD-TYPE 362 224 91 237 35
'STAG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1187.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
STAG2 MUTATED 2 2 5 0 0
STAG2 WILD-TYPE 114 179 152 83 111
'STAG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1188.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
STAG2 MUTATED 3 2 1
STAG2 WILD-TYPE 143 127 117
'STAG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1189.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
STAG2 MUTATED 2 1 2 0 1
STAG2 WILD-TYPE 57 108 88 104 30
'STAG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1190.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
STAG2 MUTATED 2 0 3 4 2 1 1
STAG2 WILD-TYPE 177 135 212 152 223 47 14
'STAG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1191.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
STAG2 MUTATED 2 0 3 5 2 1
STAG2 WILD-TYPE 166 222 185 167 169 51
'STAG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S1192.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
STAG2 MUTATED 1 8 4
STAG2 WILD-TYPE 269 405 270
'STAG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S1193.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
STAG2 MUTATED 1 2 6 2 2
STAG2 WILD-TYPE 151 172 384 123 114
'STAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1194.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
STAG2 MUTATED 4 1 2
STAG2 WILD-TYPE 244 216 185
'STAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1195.  Gene #108: 'STAG2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
STAG2 MUTATED 2 1 1 1 1 1
STAG2 WILD-TYPE 113 62 188 116 107 59
'HIST1H2BC MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S1196.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HIST1H2BC MUTATED 0 0 0 1 1 1 1 0
HIST1H2BC WILD-TYPE 21 38 114 96 107 72 18 39
'HIST1H2BC MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0461 (Fisher's exact test), Q value = 1

Table S1197.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HIST1H2BC MUTATED 0 0 3 0 1
HIST1H2BC WILD-TYPE 96 152 113 89 55

Figure S161.  Get High-res Image Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'HIST1H2BC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1198.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
HIST1H2BC MUTATED 2 1 1 2 0
HIST1H2BC WILD-TYPE 365 225 90 239 37
'HIST1H2BC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1199.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HIST1H2BC MUTATED 0 0 2 0 1
HIST1H2BC WILD-TYPE 116 181 155 83 110
'HIST1H2BC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1200.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HIST1H2BC MUTATED 3 1 0
HIST1H2BC WILD-TYPE 143 128 118
'HIST1H2BC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1201.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HIST1H2BC MUTATED 0 0 1 2 1
HIST1H2BC WILD-TYPE 59 109 89 102 30
'HIST1H2BC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1202.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
HIST1H2BC MUTATED 1 1 1 1 1 0 1
HIST1H2BC WILD-TYPE 178 134 214 155 224 48 14
'HIST1H2BC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1203.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
HIST1H2BC MUTATED 1 1 1 3 0 0
HIST1H2BC WILD-TYPE 167 221 187 169 171 52
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1204.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
HIST1H2BC MUTATED 2 3 1
HIST1H2BC WILD-TYPE 268 410 273
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S1205.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
HIST1H2BC MUTATED 2 0 3 0 1
HIST1H2BC WILD-TYPE 150 174 387 125 115
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1206.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
HIST1H2BC MUTATED 2 2 1
HIST1H2BC WILD-TYPE 246 215 186
'HIST1H2BC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1207.  Gene #109: 'HIST1H2BC MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
HIST1H2BC MUTATED 0 1 2 0 1 1
HIST1H2BC WILD-TYPE 115 62 187 117 107 59
'BPHL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S1208.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
BPHL MUTATED 0 0 1 0 2 1 1 0
BPHL WILD-TYPE 21 38 113 97 106 72 18 39
'BPHL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1209.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
BPHL MUTATED 0 3 1 0 1
BPHL WILD-TYPE 96 149 115 89 55
'BPHL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1210.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
BPHL MUTATED 1 1 1 2 0
BPHL WILD-TYPE 366 225 90 239 37
'BPHL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1211.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
BPHL MUTATED 1 1 2
BPHL WILD-TYPE 145 128 116
'BPHL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1212.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
BPHL MUTATED 1 1 0 1 1
BPHL WILD-TYPE 58 108 90 103 30
'BPHL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1213.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
BPHL MUTATED 0 0 2 1 1 0 1
BPHL WILD-TYPE 179 135 213 155 224 48 14
'BPHL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1214.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
BPHL MUTATED 0 0 1 2 1 1
BPHL WILD-TYPE 168 222 187 170 170 51
'BPHL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1215.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
BPHL MUTATED 0 4 1
BPHL WILD-TYPE 270 409 273
'BPHL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1216.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
BPHL MUTATED 0 1 3 0 1
BPHL WILD-TYPE 152 173 387 125 115
'BPHL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1217.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
BPHL MUTATED 2 0 1
BPHL WILD-TYPE 246 217 186
'BPHL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1218.  Gene #110: 'BPHL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
BPHL MUTATED 0 0 2 0 0 1
BPHL WILD-TYPE 115 63 187 117 108 59
'ATP2A1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1219.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ATP2A1 MUTATED 0 0 1 1 1 0 0 0
ATP2A1 WILD-TYPE 21 38 113 96 107 73 19 39
'ATP2A1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1220.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ATP2A1 MUTATED 0 2 0 1 0
ATP2A1 WILD-TYPE 96 150 116 88 56
'ATP2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1221.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ATP2A1 MUTATED 3 4 1 3 0
ATP2A1 WILD-TYPE 364 222 90 238 37
'ATP2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1222.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ATP2A1 MUTATED 2 3 3 1 0
ATP2A1 WILD-TYPE 114 178 154 82 111
'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1223.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ATP2A1 MUTATED 2 1 1 1 4 1 0
ATP2A1 WILD-TYPE 177 134 214 155 221 47 15
'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1224.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ATP2A1 MUTATED 2 3 0 4 1 0
ATP2A1 WILD-TYPE 166 219 188 168 170 52
'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1225.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ATP2A1 MUTATED 3 5 3
ATP2A1 WILD-TYPE 267 408 271
'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1226.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ATP2A1 MUTATED 2 1 5 1 2
ATP2A1 WILD-TYPE 150 173 385 124 114
'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1227.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ATP2A1 MUTATED 3 4 1
ATP2A1 WILD-TYPE 245 213 186
'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S1228.  Gene #111: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ATP2A1 MUTATED 1 1 3 1 2 0
ATP2A1 WILD-TYPE 114 62 186 116 106 60
'LRRC37A3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S1229.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
LRRC37A3 MUTATED 0 2 0 0 0 1 0 1
LRRC37A3 WILD-TYPE 21 36 114 97 108 72 19 38

Figure S162.  Get High-res Image Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'LRRC37A3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1230.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
LRRC37A3 MUTATED 0 3 1 0 0
LRRC37A3 WILD-TYPE 96 149 115 89 56
'LRRC37A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S1231.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
LRRC37A3 MUTATED 3 3 1 3 0
LRRC37A3 WILD-TYPE 364 223 90 238 37
'LRRC37A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S1232.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
LRRC37A3 MUTATED 2 2 1 1 2
LRRC37A3 WILD-TYPE 114 179 156 82 109
'LRRC37A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1233.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
LRRC37A3 MUTATED 1 0 2
LRRC37A3 WILD-TYPE 145 129 116
'LRRC37A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1234.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
LRRC37A3 MUTATED 0 1 0 2 0
LRRC37A3 WILD-TYPE 59 108 90 102 31
'LRRC37A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1235.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
LRRC37A3 MUTATED 3 2 1 1 1 1 1
LRRC37A3 WILD-TYPE 176 133 214 155 224 47 14
'LRRC37A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S1236.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
LRRC37A3 MUTATED 3 4 1 2 0 0
LRRC37A3 WILD-TYPE 165 218 187 170 171 52
'LRRC37A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1237.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
LRRC37A3 MUTATED 4 3 3
LRRC37A3 WILD-TYPE 266 410 271
'LRRC37A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S1238.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
LRRC37A3 MUTATED 1 2 3 3 1
LRRC37A3 WILD-TYPE 151 172 387 122 115
'LRRC37A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1239.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
LRRC37A3 MUTATED 1 2 3
LRRC37A3 WILD-TYPE 247 215 184
'LRRC37A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 1

Table S1240.  Gene #112: 'LRRC37A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
LRRC37A3 MUTATED 3 0 0 0 2 1
LRRC37A3 WILD-TYPE 112 63 189 117 106 59
'EPDR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1241.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
EPDR1 MUTATED 0 1 1 0 0 2 0 0
EPDR1 WILD-TYPE 21 37 113 97 108 71 19 39
'EPDR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1242.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
EPDR1 MUTATED 1 1 2 0 0
EPDR1 WILD-TYPE 95 151 114 89 56
'EPDR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1243.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
EPDR1 MUTATED 1 1 1 2 0
EPDR1 WILD-TYPE 366 225 90 239 37
'EPDR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1244.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
EPDR1 MUTATED 2 2 0
EPDR1 WILD-TYPE 144 127 118
'EPDR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1245.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
EPDR1 MUTATED 1 0 0 2 1
EPDR1 WILD-TYPE 58 109 90 102 30
'EPDR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1246.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
EPDR1 MUTATED 0 1 0 3 1 0 0
EPDR1 WILD-TYPE 179 134 215 153 224 48 15
'EPDR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1247.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
EPDR1 MUTATED 0 1 1 1 1 1
EPDR1 WILD-TYPE 168 221 187 171 170 51
'EPDR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1248.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
EPDR1 MUTATED 1 1 2
EPDR1 WILD-TYPE 269 412 272
'EPDR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1249.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
EPDR1 MUTATED 1 0 2 0 1
EPDR1 WILD-TYPE 151 174 388 125 115
'EPDR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1250.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
EPDR1 MUTATED 0 2 1
EPDR1 WILD-TYPE 248 215 186
'EPDR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0971 (Fisher's exact test), Q value = 1

Table S1251.  Gene #113: 'EPDR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
EPDR1 MUTATED 0 0 0 2 0 1
EPDR1 WILD-TYPE 115 63 189 115 108 59
'EXOC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 1

Table S1252.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
EXOC4 MUTATED 0 2 0 0 0 1 1 0
EXOC4 WILD-TYPE 21 36 114 97 108 72 18 39

Figure S163.  Get High-res Image Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'EXOC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1253.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
EXOC4 MUTATED 0 2 2 0 0
EXOC4 WILD-TYPE 96 150 114 89 56
'EXOC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S1254.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
EXOC4 MUTATED 1 2 1 4 0
EXOC4 WILD-TYPE 366 224 90 237 37
'EXOC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 1

Table S1255.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
EXOC4 MUTATED 0 0 4 1 2
EXOC4 WILD-TYPE 116 181 153 82 109
'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S1256.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
EXOC4 MUTATED 0 2 0 4 1 0 1
EXOC4 WILD-TYPE 179 133 215 152 224 48 14

Figure S164.  Get High-res Image Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 1

Table S1257.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
EXOC4 MUTATED 0 3 0 3 0 2
EXOC4 WILD-TYPE 168 219 188 169 171 50

Figure S165.  Get High-res Image Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1258.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
EXOC4 MUTATED 3 2 3
EXOC4 WILD-TYPE 267 411 271
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1259.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
EXOC4 MUTATED 2 1 3 0 2
EXOC4 WILD-TYPE 150 173 387 125 114
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1260.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
EXOC4 MUTATED 1 2 3
EXOC4 WILD-TYPE 247 215 184
'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1261.  Gene #114: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
EXOC4 MUTATED 0 0 2 0 2 2
EXOC4 WILD-TYPE 115 63 187 117 106 58
'C11ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S1262.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
C11ORF49 MUTATED 2 0 1 1 1
C11ORF49 WILD-TYPE 365 226 90 240 36
'C11ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1263.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
C11ORF49 MUTATED 2 0 1 0 1
C11ORF49 WILD-TYPE 114 181 156 83 110
'C11ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1264.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
C11ORF49 MUTATED 3 0 0 2 0 0 0
C11ORF49 WILD-TYPE 176 135 215 154 225 48 15
'C11ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S1265.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
C11ORF49 MUTATED 3 0 0 1 0 1
C11ORF49 WILD-TYPE 165 222 188 171 171 51

Figure S166.  Get High-res Image Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C11ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S1266.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
C11ORF49 MUTATED 0 1 4
C11ORF49 WILD-TYPE 270 412 270
'C11ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0928 (Fisher's exact test), Q value = 1

Table S1267.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
C11ORF49 MUTATED 0 0 2 3 0
C11ORF49 WILD-TYPE 152 174 388 122 116
'C11ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 1

Table S1268.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
C11ORF49 MUTATED 0 0 4
C11ORF49 WILD-TYPE 248 217 183

Figure S167.  Get High-res Image Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'C11ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1269.  Gene #115: 'C11ORF49 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
C11ORF49 MUTATED 3 0 1 0 0 0
C11ORF49 WILD-TYPE 112 63 188 117 108 60
'ACTG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1270.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACTG1 MUTATED 0 1 0 0 2 0 0 0
ACTG1 WILD-TYPE 21 37 114 97 106 73 19 39
'ACTG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1271.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACTG1 MUTATED 0 2 0 0 1
ACTG1 WILD-TYPE 96 150 116 89 55
'ACTG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S1272.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ACTG1 MUTATED 3 1 1 2 0
ACTG1 WILD-TYPE 364 225 90 239 37
'ACTG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S1273.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACTG1 MUTATED 3 0 1 2 0
ACTG1 WILD-TYPE 113 181 156 81 111

Figure S168.  Get High-res Image Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ACTG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1274.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ACTG1 MUTATED 3 2 2 0 1 0 0
ACTG1 WILD-TYPE 176 133 213 156 224 48 15
'ACTG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S1275.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ACTG1 MUTATED 3 1 2 0 2 0
ACTG1 WILD-TYPE 165 221 186 172 169 52
'ACTG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1276.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ACTG1 MUTATED 3 3 2
ACTG1 WILD-TYPE 267 410 272
'ACTG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0818 (Fisher's exact test), Q value = 1

Table S1277.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ACTG1 MUTATED 2 2 1 3 0
ACTG1 WILD-TYPE 150 172 389 122 116
'ACTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1278.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ACTG1 MUTATED 2 2 2
ACTG1 WILD-TYPE 246 215 185
'ACTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1279.  Gene #116: 'ACTG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ACTG1 MUTATED 2 1 0 0 2 1
ACTG1 WILD-TYPE 113 62 189 117 106 59
'ANXA11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S1280.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ANXA11 MUTATED 0 0 1 0 1 0 0 1
ANXA11 WILD-TYPE 21 38 113 97 107 73 19 38
'ANXA11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1281.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ANXA11 MUTATED 1 1 0 0 1
ANXA11 WILD-TYPE 95 151 116 89 55
'ANXA11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1282.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ANXA11 MUTATED 1 0 1 1 0
ANXA11 WILD-TYPE 366 226 90 240 37
'ANXA11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 1

Table S1283.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ANXA11 MUTATED 0 3 0
ANXA11 WILD-TYPE 146 126 118
'ANXA11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S1284.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ANXA11 MUTATED 1 1 0 1 0
ANXA11 WILD-TYPE 58 108 90 103 31
'ANXA11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1285.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ANXA11 MUTATED 0 0 1 0 1 1 0
ANXA11 WILD-TYPE 179 135 214 156 224 47 15
'ANXA11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S1286.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ANXA11 MUTATED 0 1 1 0 1 0
ANXA11 WILD-TYPE 168 221 187 172 170 52
'ANXA11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1287.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ANXA11 MUTATED 1 2 0
ANXA11 WILD-TYPE 269 411 274
'ANXA11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1288.  Gene #117: 'ANXA11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ANXA11 MUTATED 0 0 3 0 0
ANXA11 WILD-TYPE 152 174 387 125 116
'PFKP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1289.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PFKP MUTATED 0 0 3 3 0 0 0 0
PFKP WILD-TYPE 21 38 111 94 108 73 19 39
'PFKP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 1

Table S1290.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PFKP MUTATED 3 0 0 3 0
PFKP WILD-TYPE 93 152 116 86 56

Figure S169.  Get High-res Image Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S1291.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PFKP MUTATED 1 2 0 3 1
PFKP WILD-TYPE 366 224 91 238 36
'PFKP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S1292.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PFKP MUTATED 0 1 2 0 0
PFKP WILD-TYPE 116 180 155 83 111
'PFKP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1293.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PFKP MUTATED 3 0 2
PFKP WILD-TYPE 143 129 116
'PFKP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1294.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PFKP MUTATED 0 0 3 2 0
PFKP WILD-TYPE 59 109 87 102 31
'PFKP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1295.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PFKP MUTATED 3 0 1 0 3 0 0
PFKP WILD-TYPE 176 135 214 156 222 48 15
'PFKP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1296.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PFKP MUTATED 3 0 1 1 2 0
PFKP WILD-TYPE 165 222 187 171 169 52
'PFKP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1297.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PFKP MUTATED 1 2 4
PFKP WILD-TYPE 269 411 270
'PFKP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0979 (Fisher's exact test), Q value = 1

Table S1298.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PFKP MUTATED 0 0 4 3 0
PFKP WILD-TYPE 152 174 386 122 116
'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1299.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PFKP MUTATED 1 0 2
PFKP WILD-TYPE 247 217 185
'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1300.  Gene #118: 'PFKP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PFKP MUTATED 2 0 1 0 0 0
PFKP WILD-TYPE 113 63 188 117 108 60
'GYLTL1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1301.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GYLTL1B MUTATED 1 0 0 1 1 1 0 0
GYLTL1B WILD-TYPE 20 38 114 96 107 72 19 39
'GYLTL1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1302.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GYLTL1B MUTATED 0 1 1 1 1
GYLTL1B WILD-TYPE 96 151 115 88 55
'GYLTL1B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1303.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GYLTL1B MUTATED 2 1 0 1 0
GYLTL1B WILD-TYPE 365 225 91 240 37
'GYLTL1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1304.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GYLTL1B MUTATED 1 1 2
GYLTL1B WILD-TYPE 145 128 116
'GYLTL1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1305.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GYLTL1B MUTATED 0 2 2 0 0
GYLTL1B WILD-TYPE 59 107 88 104 31
'GYLTL1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1306.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GYLTL1B MUTATED 1 0 2 1 0 0 0
GYLTL1B WILD-TYPE 178 135 213 155 225 48 15
'GYLTL1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1307.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GYLTL1B MUTATED 1 0 1 2 0 0
GYLTL1B WILD-TYPE 167 222 187 170 171 52
'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1308.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GYLTL1B MUTATED 1 1 2
GYLTL1B WILD-TYPE 269 412 272
'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1309.  Gene #119: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GYLTL1B MUTATED 0 1 1 1 1
GYLTL1B WILD-TYPE 152 173 389 124 115
'ANGPTL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S1310.  Gene #120: 'ANGPTL6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ANGPTL6 MUTATED 2 0 0 1 0
ANGPTL6 WILD-TYPE 365 226 91 240 37
'ANGPTL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1311.  Gene #120: 'ANGPTL6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ANGPTL6 MUTATED 1 0 2 0 0 0 0
ANGPTL6 WILD-TYPE 178 135 213 156 225 48 15
'ANGPTL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S1312.  Gene #120: 'ANGPTL6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ANGPTL6 MUTATED 1 1 1 0 0 0
ANGPTL6 WILD-TYPE 167 221 187 172 171 52
'SP3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1313.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SP3 MUTATED 0 0 1 0 2 1 0 0
SP3 WILD-TYPE 21 38 113 97 106 72 19 39
'SP3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1314.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SP3 MUTATED 0 3 1 0 0
SP3 WILD-TYPE 96 149 115 89 56
'SP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1315.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SP3 MUTATED 3 2 1 0 0
SP3 WILD-TYPE 364 224 90 241 37
'SP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S1316.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SP3 MUTATED 0 2 1 0 1
SP3 WILD-TYPE 116 179 156 83 110
'SP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1317.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SP3 MUTATED 0 2 0 2 2 1 0
SP3 WILD-TYPE 179 133 215 154 223 47 15
'SP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1318.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SP3 MUTATED 0 3 2 2 0 0
SP3 WILD-TYPE 168 219 186 170 171 52
'SP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1319.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SP3 MUTATED 3 4 0
SP3 WILD-TYPE 267 409 274
'SP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1320.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SP3 MUTATED 0 1 5 0 1
SP3 WILD-TYPE 152 173 385 125 115
'SP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1321.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SP3 MUTATED 1 3 0
SP3 WILD-TYPE 247 214 187
'SP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1322.  Gene #121: 'SP3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SP3 MUTATED 0 1 1 1 1 0
SP3 WILD-TYPE 115 62 188 116 107 60
'RUFY1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1323.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RUFY1 MUTATED 1 0 1 0 1 0 0 0
RUFY1 WILD-TYPE 20 38 113 97 107 73 19 39
'RUFY1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1324.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RUFY1 MUTATED 1 2 0 0 0
RUFY1 WILD-TYPE 95 150 116 89 56
'RUFY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1325.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RUFY1 MUTATED 2 1 1 1 1
RUFY1 WILD-TYPE 365 225 90 240 36
'RUFY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S1326.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RUFY1 MUTATED 1 0 3 0 0
RUFY1 WILD-TYPE 115 181 154 83 111
'RUFY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S1327.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RUFY1 MUTATED 1 0 1 1 3 0 0
RUFY1 WILD-TYPE 178 135 214 155 222 48 15
'RUFY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00535 (Fisher's exact test), Q value = 1

Table S1328.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RUFY1 MUTATED 1 0 0 5 0 0
RUFY1 WILD-TYPE 167 222 188 167 171 52

Figure S170.  Get High-res Image Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUFY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1329.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RUFY1 MUTATED 1 4 1
RUFY1 WILD-TYPE 269 409 273
'RUFY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1330.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RUFY1 MUTATED 0 0 5 1 0
RUFY1 WILD-TYPE 152 174 385 124 116
'RUFY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1331.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RUFY1 MUTATED 3 0 1
RUFY1 WILD-TYPE 245 217 186
'RUFY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1332.  Gene #122: 'RUFY1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RUFY1 MUTATED 1 1 2 0 0 0
RUFY1 WILD-TYPE 114 62 187 117 108 60
'LIFR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S1333.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
LIFR MUTATED 0 0 0 0 2 2 0 1
LIFR WILD-TYPE 21 38 114 97 106 71 19 38
'LIFR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1334.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
LIFR MUTATED 0 3 2 0 0
LIFR WILD-TYPE 96 149 114 89 56
'LIFR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S1335.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
LIFR MUTATED 5 0 1 2 1
LIFR WILD-TYPE 362 226 90 239 36
'LIFR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1336.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
LIFR MUTATED 1 0 3 1 2
LIFR WILD-TYPE 115 181 154 82 109
'LIFR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00796 (Fisher's exact test), Q value = 1

Table S1337.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
LIFR MUTATED 0 0 4
LIFR WILD-TYPE 146 129 114

Figure S171.  Get High-res Image Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LIFR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.072 (Fisher's exact test), Q value = 1

Table S1338.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
LIFR MUTATED 0 4 0 0 0
LIFR WILD-TYPE 59 105 90 104 31
'LIFR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1339.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
LIFR MUTATED 1 2 1 3 1 1 0
LIFR WILD-TYPE 178 133 214 153 224 47 15
'LIFR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.08 (Fisher's exact test), Q value = 1

Table S1340.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
LIFR MUTATED 1 3 0 4 0 1
LIFR WILD-TYPE 167 219 188 168 171 51
'LIFR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1341.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
LIFR MUTATED 4 4 1
LIFR WILD-TYPE 266 409 273
'LIFR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1342.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
LIFR MUTATED 1 2 4 1 1
LIFR WILD-TYPE 151 172 386 124 115
'LIFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1343.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
LIFR MUTATED 2 2 1
LIFR WILD-TYPE 246 215 186
'LIFR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1344.  Gene #123: 'LIFR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
LIFR MUTATED 1 1 2 0 1 0
LIFR WILD-TYPE 114 62 187 117 107 60
'OR6C76 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1345.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
OR6C76 MUTATED 0 0 0 1 2 0 1 0
OR6C76 WILD-TYPE 21 38 114 96 106 73 18 39
'OR6C76 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S1346.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
OR6C76 MUTATED 0 3 0 1 0
OR6C76 WILD-TYPE 96 149 116 88 56
'OR6C76 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S1347.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
OR6C76 MUTATED 4 1 1 0 0
OR6C76 WILD-TYPE 363 225 90 241 37
'OR6C76 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1348.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
OR6C76 MUTATED 1 1 1 0 2
OR6C76 WILD-TYPE 115 180 156 83 109
'OR6C76 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1349.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
OR6C76 MUTATED 1 2 0
OR6C76 WILD-TYPE 145 127 118
'OR6C76 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1350.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
OR6C76 MUTATED 1 1 1 0 0
OR6C76 WILD-TYPE 58 108 89 104 31
'OR6C76 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1351.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
OR6C76 MUTATED 1 2 3 1 0 0 0
OR6C76 WILD-TYPE 178 133 212 155 225 48 15
'OR6C76 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1352.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
OR6C76 MUTATED 1 2 1 1 1 1
OR6C76 WILD-TYPE 167 220 187 171 170 51
'OR6C76 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1353.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
OR6C76 MUTATED 3 2 2
OR6C76 WILD-TYPE 267 411 272
'OR6C76 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1354.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
OR6C76 MUTATED 2 1 1 1 2
OR6C76 WILD-TYPE 150 173 389 124 114
'OR6C76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1355.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
OR6C76 MUTATED 1 3 1
OR6C76 WILD-TYPE 247 214 186
'OR6C76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S1356.  Gene #124: 'OR6C76 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
OR6C76 MUTATED 1 0 1 0 2 1
OR6C76 WILD-TYPE 114 63 188 117 106 59
'HCFC2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 1

Table S1357.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HCFC2 MUTATED 1 0 1 0 0 0 1 1
HCFC2 WILD-TYPE 20 38 113 97 108 73 18 38

Figure S172.  Get High-res Image Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'HCFC2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1358.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HCFC2 MUTATED 0 3 1 0 0
HCFC2 WILD-TYPE 96 149 115 89 56
'HCFC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1359.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
HCFC2 MUTATED 4 1 1 2 2
HCFC2 WILD-TYPE 363 225 90 239 35
'HCFC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1360.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HCFC2 MUTATED 2 2 3 0 1
HCFC2 WILD-TYPE 114 179 154 83 110
'HCFC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 1

Table S1361.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
HCFC2 MUTATED 1 3 1 3 0 1 1
HCFC2 WILD-TYPE 178 132 214 153 225 47 14

Figure S173.  Get High-res Image Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'HCFC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1362.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
HCFC2 MUTATED 1 3 1 3 1 1
HCFC2 WILD-TYPE 167 219 187 169 170 51
'HCFC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1363.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
HCFC2 MUTATED 2 5 3
HCFC2 WILD-TYPE 268 408 271
'HCFC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1364.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
HCFC2 MUTATED 1 2 5 1 1
HCFC2 WILD-TYPE 151 172 385 124 115
'HCFC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1365.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
HCFC2 MUTATED 3 3 2
HCFC2 WILD-TYPE 245 214 185
'HCFC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1366.  Gene #125: 'HCFC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
HCFC2 MUTATED 1 1 3 1 1 1
HCFC2 WILD-TYPE 114 62 186 116 107 59
'ACOT2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1367.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACOT2 MUTATED 0 2 0 1 1 0 0 0
ACOT2 WILD-TYPE 21 36 114 96 107 73 19 39
'ACOT2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1368.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACOT2 MUTATED 0 3 0 1 0
ACOT2 WILD-TYPE 96 149 116 88 56
'ACOT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1369.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ACOT2 MUTATED 2 2 1 0 0
ACOT2 WILD-TYPE 365 224 90 241 37
'ACOT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S1370.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACOT2 MUTATED 0 0 1 2 1
ACOT2 WILD-TYPE 116 181 156 81 110
'ACOT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S1371.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ACOT2 MUTATED 1 2 1 0 1 0 0
ACOT2 WILD-TYPE 178 133 214 156 224 48 15
'ACOT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1372.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ACOT2 MUTATED 1 2 1 0 1 0
ACOT2 WILD-TYPE 167 220 187 172 170 52
'ACOT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1373.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ACOT2 MUTATED 3 1 1
ACOT2 WILD-TYPE 267 412 273
'ACOT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1374.  Gene #126: 'ACOT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ACOT2 MUTATED 1 1 2 0 1
ACOT2 WILD-TYPE 151 173 388 125 115
'KIAA0430 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1375.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KIAA0430 MUTATED 0 1 3 1 1 1 1 0
KIAA0430 WILD-TYPE 21 37 111 96 107 72 18 39
'KIAA0430 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1376.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KIAA0430 MUTATED 3 2 2 1 0
KIAA0430 WILD-TYPE 93 150 114 88 56
'KIAA0430 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1377.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
KIAA0430 MUTATED 3 5 4 3 0
KIAA0430 WILD-TYPE 364 221 87 238 37
'KIAA0430 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1378.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KIAA0430 MUTATED 2 1 2 4 1
KIAA0430 WILD-TYPE 114 180 155 79 110
'KIAA0430 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1379.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KIAA0430 MUTATED 3 0 1
KIAA0430 WILD-TYPE 143 129 117
'KIAA0430 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S1380.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KIAA0430 MUTATED 0 0 1 3 0
KIAA0430 WILD-TYPE 59 109 89 101 31
'KIAA0430 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S1381.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
KIAA0430 MUTATED 4 2 2 2 4 0 1
KIAA0430 WILD-TYPE 175 133 213 154 221 48 14
'KIAA0430 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S1382.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
KIAA0430 MUTATED 3 4 2 5 1 0
KIAA0430 WILD-TYPE 165 218 186 167 170 52
'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1383.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
KIAA0430 MUTATED 4 7 4
KIAA0430 WILD-TYPE 266 406 270
'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1384.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
KIAA0430 MUTATED 1 4 7 2 1
KIAA0430 WILD-TYPE 151 170 383 123 115
'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S1385.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
KIAA0430 MUTATED 2 3 3
KIAA0430 WILD-TYPE 246 214 184
'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1386.  Gene #127: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
KIAA0430 MUTATED 3 1 1 3 0 0
KIAA0430 WILD-TYPE 112 62 188 114 108 60
'GTF2IRD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1387.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GTF2IRD2 MUTATED 0 1 1 1 1 1 0 2
GTF2IRD2 WILD-TYPE 21 37 113 96 107 72 19 37
'GTF2IRD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S1388.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GTF2IRD2 MUTATED 1 3 1 1 1
GTF2IRD2 WILD-TYPE 95 149 115 88 55
'GTF2IRD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S1389.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GTF2IRD2 MUTATED 1 1 4 2 0
GTF2IRD2 WILD-TYPE 366 225 87 239 37

Figure S174.  Get High-res Image Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GTF2IRD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1390.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GTF2IRD2 MUTATED 1 1 0 1 0
GTF2IRD2 WILD-TYPE 115 180 157 82 111
'GTF2IRD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1391.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GTF2IRD2 MUTATED 3 2 0
GTF2IRD2 WILD-TYPE 143 127 118
'GTF2IRD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S1392.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GTF2IRD2 MUTATED 1 1 1 2 0
GTF2IRD2 WILD-TYPE 58 108 89 102 31
'GTF2IRD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1393.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GTF2IRD2 MUTATED 2 2 1 1 1 1 0
GTF2IRD2 WILD-TYPE 177 133 214 155 224 47 15
'GTF2IRD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1394.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GTF2IRD2 MUTATED 2 3 1 2 0 0
GTF2IRD2 WILD-TYPE 166 219 187 170 171 52
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1395.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GTF2IRD2 MUTATED 3 2 2
GTF2IRD2 WILD-TYPE 267 411 272
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1396.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GTF2IRD2 MUTATED 1 2 2 2 0
GTF2IRD2 WILD-TYPE 151 172 388 123 116
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1397.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
GTF2IRD2 MUTATED 1 1 2
GTF2IRD2 WILD-TYPE 247 216 185
'GTF2IRD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 1

Table S1398.  Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
GTF2IRD2 MUTATED 2 2 0 0 0 0
GTF2IRD2 WILD-TYPE 113 61 189 117 108 60

Figure S175.  Get High-res Image Gene #128: 'GTF2IRD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NPAS4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1399.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NPAS4 MUTATED 0 0 4 1 1 0 0 0
NPAS4 WILD-TYPE 21 38 110 96 107 73 19 39
'NPAS4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S1400.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NPAS4 MUTATED 3 0 1 1 1
NPAS4 WILD-TYPE 93 152 115 88 55
'NPAS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S1401.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
NPAS4 MUTATED 1 5 0 3 0
NPAS4 WILD-TYPE 366 221 91 238 37
'NPAS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1402.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NPAS4 MUTATED 2 3 1 0 0
NPAS4 WILD-TYPE 114 178 156 83 111
'NPAS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S1403.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NPAS4 MUTATED 1 2 1
NPAS4 WILD-TYPE 145 127 117
'NPAS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1404.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NPAS4 MUTATED 0 1 1 2 0
NPAS4 WILD-TYPE 59 108 89 102 31
'NPAS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1405.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
NPAS4 MUTATED 3 0 1 0 5 0 0
NPAS4 WILD-TYPE 176 135 214 156 220 48 15
'NPAS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 1

Table S1406.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
NPAS4 MUTATED 3 0 0 2 4 0
NPAS4 WILD-TYPE 165 222 188 170 167 52
'NPAS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S1407.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
NPAS4 MUTATED 0 5 4
NPAS4 WILD-TYPE 270 408 270
'NPAS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1408.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
NPAS4 MUTATED 0 4 2 2 1
NPAS4 WILD-TYPE 152 170 388 123 115
'NPAS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1409.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
NPAS4 MUTATED 1 1 3
NPAS4 WILD-TYPE 247 216 184
'NPAS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1410.  Gene #129: 'NPAS4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
NPAS4 MUTATED 2 0 1 2 0 0
NPAS4 WILD-TYPE 113 63 188 115 108 60
'JAK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1411.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
JAK1 MUTATED 0 1 2 0 3 0 0 1
JAK1 WILD-TYPE 21 37 112 97 105 73 19 38
'JAK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S1412.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
JAK1 MUTATED 2 4 1 0 0
JAK1 WILD-TYPE 94 148 115 89 56
'JAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1413.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
JAK1 MUTATED 4 1 3 2 0
JAK1 WILD-TYPE 363 225 88 239 37
'JAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S1414.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
JAK1 MUTATED 0 2 3 1 0
JAK1 WILD-TYPE 116 179 154 82 111
'JAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1415.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
JAK1 MUTATED 2 2 1
JAK1 WILD-TYPE 144 127 117
'JAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1416.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
JAK1 MUTATED 1 2 0 2 0
JAK1 WILD-TYPE 58 107 90 102 31
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1417.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
JAK1 MUTATED 0 4 2 1 4 0 0
JAK1 WILD-TYPE 179 131 213 155 221 48 15
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1418.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
JAK1 MUTATED 0 4 1 4 2 0
JAK1 WILD-TYPE 168 218 187 168 169 52
'JAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 1

Table S1419.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
JAK1 MUTATED 3 8 0
JAK1 WILD-TYPE 267 405 274
'JAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S1420.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
JAK1 MUTATED 2 3 6 0 0
JAK1 WILD-TYPE 150 171 384 125 116
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1421.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
JAK1 MUTATED 4 1 0
JAK1 WILD-TYPE 244 216 187
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1422.  Gene #130: 'JAK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
JAK1 MUTATED 0 1 3 1 0 0
JAK1 WILD-TYPE 115 62 186 116 108 60
'FGFR3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 1

Table S1423.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FGFR3 MUTATED 1 0 0 1 0 0 0 1
FGFR3 WILD-TYPE 20 38 114 96 108 73 19 38
'FGFR3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1424.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FGFR3 MUTATED 0 1 1 1 0
FGFR3 WILD-TYPE 96 151 115 88 56
'FGFR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1425.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FGFR3 MUTATED 1 1 0 2 0
FGFR3 WILD-TYPE 366 225 91 239 37
'FGFR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1426.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FGFR3 MUTATED 2 0 2 0 0 0 0
FGFR3 WILD-TYPE 177 135 213 156 225 48 15
'FGFR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1427.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FGFR3 MUTATED 2 1 1 0 0 0
FGFR3 WILD-TYPE 166 221 187 172 171 52
'FGFR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S1428.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FGFR3 MUTATED 0 1 3
FGFR3 WILD-TYPE 270 412 271
'FGFR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1429.  Gene #131: 'FGFR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FGFR3 MUTATED 0 1 1 2 0
FGFR3 WILD-TYPE 152 173 389 123 116
'FBXW7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1430.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FBXW7 MUTATED 0 1 1 2 2 0 0 0
FBXW7 WILD-TYPE 21 37 113 95 106 73 19 39
'FBXW7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1431.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FBXW7 MUTATED 1 2 0 2 1
FBXW7 WILD-TYPE 95 150 116 87 55
'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S1432.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FBXW7 MUTATED 5 1 1 8 0
FBXW7 WILD-TYPE 362 225 90 233 37
'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00416 (Fisher's exact test), Q value = 1

Table S1433.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FBXW7 MUTATED 7 2 0 1 1
FBXW7 WILD-TYPE 109 179 157 82 110

Figure S176.  Get High-res Image Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1434.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FBXW7 MUTATED 2 1 0
FBXW7 WILD-TYPE 144 128 118
'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S1435.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FBXW7 MUTATED 0 0 1 2 0
FBXW7 WILD-TYPE 59 109 89 102 31
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1436.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FBXW7 MUTATED 7 1 5 1 1 0 0
FBXW7 WILD-TYPE 172 134 210 155 224 48 15
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 1

Table S1437.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FBXW7 MUTATED 7 1 4 2 1 0
FBXW7 WILD-TYPE 161 221 184 170 170 52
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1438.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FBXW7 MUTATED 3 5 7
FBXW7 WILD-TYPE 267 408 267
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 1

Table S1439.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FBXW7 MUTATED 2 2 4 6 1
FBXW7 WILD-TYPE 150 172 386 119 115
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S1440.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
FBXW7 MUTATED 3 2 5
FBXW7 WILD-TYPE 245 215 182
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1441.  Gene #132: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
FBXW7 MUTATED 5 1 2 0 2 0
FBXW7 WILD-TYPE 110 62 187 117 106 60
'OR2T8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1442.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
OR2T8 MUTATED 2 1 1 2 0
OR2T8 WILD-TYPE 365 225 90 239 37
'OR2T8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1443.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
OR2T8 MUTATED 2 2 2 0 0
OR2T8 WILD-TYPE 114 179 155 83 111
'OR2T8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1444.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
OR2T8 MUTATED 1 1 1 1 1 1 0
OR2T8 WILD-TYPE 178 134 214 155 224 47 15
'OR2T8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S1445.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
OR2T8 MUTATED 1 2 1 0 1 1
OR2T8 WILD-TYPE 167 220 187 172 170 51
'OR2T8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 1

Table S1446.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
OR2T8 MUTATED 4 0 2
OR2T8 WILD-TYPE 266 413 272

Figure S177.  Get High-res Image Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'OR2T8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1447.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
OR2T8 MUTATED 0 3 1 1 1
OR2T8 WILD-TYPE 152 171 389 124 115
'OR2T8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1448.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
OR2T8 MUTATED 0 3 2
OR2T8 WILD-TYPE 248 214 185
'OR2T8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1449.  Gene #133: 'OR2T8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
OR2T8 MUTATED 1 0 1 2 0 1
OR2T8 WILD-TYPE 114 63 188 115 108 59
'SHANK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1450.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SHANK2 MUTATED 0 0 0 2 3 5 0 0
SHANK2 WILD-TYPE 21 38 114 95 105 68 19 39
'SHANK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S1451.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SHANK2 MUTATED 0 3 5 2 0
SHANK2 WILD-TYPE 96 149 111 87 56
'SHANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1452.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SHANK2 MUTATED 5 5 2 3 0
SHANK2 WILD-TYPE 362 221 89 238 37
'SHANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1453.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SHANK2 MUTATED 1 0 4 2 1
SHANK2 WILD-TYPE 115 181 153 81 110
'SHANK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S1454.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SHANK2 MUTATED 5 1 0
SHANK2 WILD-TYPE 141 128 118
'SHANK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1455.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SHANK2 MUTATED 1 0 4 1 0
SHANK2 WILD-TYPE 58 109 86 103 31
'SHANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S1456.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SHANK2 MUTATED 2 0 3 5 3 2 0
SHANK2 WILD-TYPE 177 135 212 151 222 46 15
'SHANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1457.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SHANK2 MUTATED 2 2 2 7 2 0
SHANK2 WILD-TYPE 166 220 186 165 169 52
'SHANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1458.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SHANK2 MUTATED 6 5 4
SHANK2 WILD-TYPE 264 408 270
'SHANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1459.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SHANK2 MUTATED 3 2 8 2 0
SHANK2 WILD-TYPE 149 172 382 123 116
'SHANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1460.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SHANK2 MUTATED 2 5 2
SHANK2 WILD-TYPE 246 212 185
'SHANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1461.  Gene #134: 'SHANK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SHANK2 MUTATED 2 0 2 2 3 0
SHANK2 WILD-TYPE 113 63 187 115 105 60
'TRMT2A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1462.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TRMT2A MUTATED 0 0 3 1 1 1 0 0
TRMT2A WILD-TYPE 21 38 111 96 107 72 19 39
'TRMT2A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1463.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TRMT2A MUTATED 2 2 1 1 0
TRMT2A WILD-TYPE 94 150 115 88 56
'TRMT2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S1464.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TRMT2A MUTATED 2 3 0 2 0
TRMT2A WILD-TYPE 365 223 91 239 37
'TRMT2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1465.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TRMT2A MUTATED 1 0 1 1 1
TRMT2A WILD-TYPE 115 181 156 82 110
'TRMT2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1466.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TRMT2A MUTATED 3 1 0
TRMT2A WILD-TYPE 143 128 118
'TRMT2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1467.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TRMT2A MUTATED 1 0 1 2 0
TRMT2A WILD-TYPE 58 109 89 102 31
'TRMT2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1468.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TRMT2A MUTATED 1 0 1 2 3 0 0
TRMT2A WILD-TYPE 178 135 214 154 222 48 15
'TRMT2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1469.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TRMT2A MUTATED 1 1 0 3 2 0
TRMT2A WILD-TYPE 167 221 188 169 169 52
'TRMT2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1470.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TRMT2A MUTATED 1 4 2
TRMT2A WILD-TYPE 269 409 272
'TRMT2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1471.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TRMT2A MUTATED 1 0 4 1 1
TRMT2A WILD-TYPE 151 174 386 124 115
'TRMT2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1472.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TRMT2A MUTATED 2 0 2
TRMT2A WILD-TYPE 246 217 185
'TRMT2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1473.  Gene #135: 'TRMT2A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TRMT2A MUTATED 1 1 2 0 0 0
TRMT2A WILD-TYPE 114 62 187 117 108 60
'SHISA4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 1

Table S1474.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SHISA4 MUTATED 0 2 1 0 0 0 0 0
SHISA4 WILD-TYPE 21 36 113 97 108 73 19 39
'SHISA4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1475.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SHISA4 MUTATED 1 2 0 0 0
SHISA4 WILD-TYPE 95 150 116 89 56
'SHISA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S1476.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SHISA4 MUTATED 0 1 1 2 1
SHISA4 WILD-TYPE 367 225 90 239 36
'SHISA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1477.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SHISA4 MUTATED 2 0 0 1 1
SHISA4 WILD-TYPE 114 181 157 82 110
'SHISA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1478.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SHISA4 MUTATED 1 1 0 1 1 0 1
SHISA4 WILD-TYPE 178 134 215 155 224 48 14
'SHISA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1479.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SHISA4 MUTATED 0 2 0 1 1 1
SHISA4 WILD-TYPE 168 220 188 171 170 51
'SHISA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1480.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SHISA4 MUTATED 2 3 0
SHISA4 WILD-TYPE 268 410 274
'SHISA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1481.  Gene #136: 'SHISA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SHISA4 MUTATED 0 1 3 0 1
SHISA4 WILD-TYPE 152 173 387 125 115
'CCNL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S1482.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CCNL2 MUTATED 0 0 1 1 1 0 0 1
CCNL2 WILD-TYPE 21 38 113 96 107 73 19 38
'CCNL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1483.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CCNL2 MUTATED 1 2 0 1 0
CCNL2 WILD-TYPE 95 150 116 88 56
'CCNL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1484.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CCNL2 MUTATED 3 2 0 2 0
CCNL2 WILD-TYPE 364 224 91 239 37
'CCNL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S1485.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CCNL2 MUTATED 0 0 2 1 1
CCNL2 WILD-TYPE 116 181 155 82 110
'CCNL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S1486.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CCNL2 MUTATED 1 0 2 1 1 1 1
CCNL2 WILD-TYPE 178 135 213 155 224 47 14
'CCNL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1487.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CCNL2 MUTATED 1 3 1 2 0 0
CCNL2 WILD-TYPE 167 219 187 170 171 52
'CCNL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1488.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CCNL2 MUTATED 1 5 1
CCNL2 WILD-TYPE 269 408 273
'CCNL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1489.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CCNL2 MUTATED 0 1 5 1 0
CCNL2 WILD-TYPE 152 173 385 124 116
'CCNL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1490.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CCNL2 MUTATED 2 1 1
CCNL2 WILD-TYPE 246 216 186
'CCNL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S1491.  Gene #137: 'CCNL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CCNL2 MUTATED 1 0 2 0 1 0
CCNL2 WILD-TYPE 114 63 187 117 107 60
'SEC14L5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1492.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SEC14L5 MUTATED 0 0 1 4 0 0 0 0
SEC14L5 WILD-TYPE 21 38 113 93 108 73 19 39
'SEC14L5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 1

Table S1493.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SEC14L5 MUTATED 0 0 0 4 1
SEC14L5 WILD-TYPE 96 152 116 85 55

Figure S178.  Get High-res Image Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SEC14L5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1494.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SEC14L5 MUTATED 2 0 0 5 0
SEC14L5 WILD-TYPE 365 226 91 236 37
'SEC14L5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1495.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SEC14L5 MUTATED 1 0 1 0 1
SEC14L5 WILD-TYPE 115 181 156 83 110
'SEC14L5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1496.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SEC14L5 MUTATED 3 1 0
SEC14L5 WILD-TYPE 143 128 118
'SEC14L5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1497.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SEC14L5 MUTATED 1 0 3 0 0
SEC14L5 WILD-TYPE 58 109 87 104 31
'SEC14L5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1498.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SEC14L5 MUTATED 4 0 1 1 1 0 0
SEC14L5 WILD-TYPE 175 135 214 155 224 48 15
'SEC14L5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0361 (Fisher's exact test), Q value = 1

Table S1499.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SEC14L5 MUTATED 4 0 1 1 0 1
SEC14L5 WILD-TYPE 164 222 187 171 171 51

Figure S179.  Get High-res Image Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SEC14L5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 1

Table S1500.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SEC14L5 MUTATED 1 1 5
SEC14L5 WILD-TYPE 269 412 269
'SEC14L5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 1

Table S1501.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SEC14L5 MUTATED 1 0 1 3 2
SEC14L5 WILD-TYPE 151 174 389 122 114

Figure S180.  Get High-res Image Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SEC14L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 1

Table S1502.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SEC14L5 MUTATED 0 0 3
SEC14L5 WILD-TYPE 248 217 184

Figure S181.  Get High-res Image Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'SEC14L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1503.  Gene #138: 'SEC14L5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SEC14L5 MUTATED 1 0 1 0 0 1
SEC14L5 WILD-TYPE 114 63 188 117 108 59
'SARM1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1504.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SARM1 MUTATED 0 0 0 3 1 1 0 0
SARM1 WILD-TYPE 21 38 114 94 107 72 19 39
'SARM1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1505.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SARM1 MUTATED 1 0 1 3 0
SARM1 WILD-TYPE 95 152 115 86 56
'SARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1506.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SARM1 MUTATED 2 3 0 1 0
SARM1 WILD-TYPE 365 223 91 240 37
'SARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1507.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SARM1 MUTATED 2 0 1
SARM1 WILD-TYPE 144 129 117
'SARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 1

Table S1508.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SARM1 MUTATED 0 0 3 0 0
SARM1 WILD-TYPE 59 109 87 104 31

Figure S182.  Get High-res Image Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'SARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1509.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SARM1 MUTATED 3 0 1 2 0 0 0
SARM1 WILD-TYPE 176 135 214 154 225 48 15
'SARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 1

Table S1510.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SARM1 MUTATED 3 0 0 3 0 0
SARM1 WILD-TYPE 165 222 188 169 171 52

Figure S183.  Get High-res Image Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 1

Table S1511.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SARM1 MUTATED 0 2 4
SARM1 WILD-TYPE 270 411 270
'SARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1512.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SARM1 MUTATED 0 0 3 2 1
SARM1 WILD-TYPE 152 174 387 123 115
'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1513.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SARM1 MUTATED 1 0 3
SARM1 WILD-TYPE 247 217 184
'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S1514.  Gene #139: 'SARM1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SARM1 MUTATED 3 0 1 0 0 0
SARM1 WILD-TYPE 112 63 188 117 108 60
'CLEC18B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1515.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CLEC18B MUTATED 0 1 1 1 0 0 0 0
CLEC18B WILD-TYPE 21 37 113 96 108 73 19 39
'CLEC18B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1516.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CLEC18B MUTATED 1 1 1 0 0
CLEC18B WILD-TYPE 95 151 115 89 56
'CLEC18B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S1517.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CLEC18B MUTATED 1 2 1 2 0
CLEC18B WILD-TYPE 366 224 90 239 37
'CLEC18B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1518.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CLEC18B MUTATED 2 2 1 0 0
CLEC18B WILD-TYPE 114 179 156 83 111
'CLEC18B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1519.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CLEC18B MUTATED 1 0 2
CLEC18B WILD-TYPE 145 129 116
'CLEC18B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1520.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CLEC18B MUTATED 0 0 1 2 0
CLEC18B WILD-TYPE 59 109 89 102 31
'CLEC18B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1521.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CLEC18B MUTATED 2 2 1 0 1 0 0
CLEC18B WILD-TYPE 177 133 214 156 224 48 15
'CLEC18B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1522.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CLEC18B MUTATED 0 2 1 2 1 0
CLEC18B WILD-TYPE 168 220 187 170 170 52
'CLEC18B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1523.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CLEC18B MUTATED 2 2 2
CLEC18B WILD-TYPE 268 411 272
'CLEC18B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1524.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CLEC18B MUTATED 1 2 2 0 1
CLEC18B WILD-TYPE 151 172 388 125 115
'CLEC18B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1525.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CLEC18B MUTATED 2 0 1
CLEC18B WILD-TYPE 246 217 186
'CLEC18B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1526.  Gene #140: 'CLEC18B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CLEC18B MUTATED 0 0 1 1 0 1
CLEC18B WILD-TYPE 115 63 188 116 108 59
'GIPC3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1527.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GIPC3 MUTATED 0 0 2 0 1 0 0 0
GIPC3 WILD-TYPE 21 38 112 97 107 73 19 39
'GIPC3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S1528.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GIPC3 MUTATED 1 1 0 0 1
GIPC3 WILD-TYPE 95 151 116 89 55
'GIPC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1529.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GIPC3 MUTATED 1 0 1 1 0
GIPC3 WILD-TYPE 366 226 90 240 37
'GIPC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1530.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GIPC3 MUTATED 1 1 1
GIPC3 WILD-TYPE 145 128 117
'GIPC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S1531.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GIPC3 MUTATED 2 1 0 0 0
GIPC3 WILD-TYPE 57 108 90 104 31
'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1532.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GIPC3 MUTATED 0 0 2 0 2 0 0
GIPC3 WILD-TYPE 179 135 213 156 223 48 15
'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S1533.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GIPC3 MUTATED 0 1 2 0 1 0
GIPC3 WILD-TYPE 168 221 186 172 170 52
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1534.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GIPC3 MUTATED 0 3 1
GIPC3 WILD-TYPE 270 410 273
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1535.  Gene #141: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GIPC3 MUTATED 0 1 2 0 1
GIPC3 WILD-TYPE 152 173 388 125 115
'HPS3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1536.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HPS3 MUTATED 0 0 0 2 0 2 1 0
HPS3 WILD-TYPE 21 38 114 95 108 71 18 39
'HPS3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1537.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HPS3 MUTATED 0 1 2 2 0
HPS3 WILD-TYPE 96 151 114 87 56
'HPS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1538.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
HPS3 MUTATED 4 0 0 5 0
HPS3 WILD-TYPE 363 226 91 236 37
'HPS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1539.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HPS3 MUTATED 2 0 1 0 2
HPS3 WILD-TYPE 114 181 156 83 109
'HPS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1540.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HPS3 MUTATED 3 0 0
HPS3 WILD-TYPE 143 129 118
'HPS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 1

Table S1541.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HPS3 MUTATED 0 0 2 0 1
HPS3 WILD-TYPE 59 109 88 104 30

Figure S184.  Get High-res Image Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1542.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
HPS3 MUTATED 5 1 1 2 0 0 0
HPS3 WILD-TYPE 174 134 214 154 225 48 15
'HPS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.005 (Fisher's exact test), Q value = 1

Table S1543.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
HPS3 MUTATED 5 1 1 0 0 2
HPS3 WILD-TYPE 163 221 187 172 171 50

Figure S185.  Get High-res Image Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 1

Table S1544.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
HPS3 MUTATED 1 2 6
HPS3 WILD-TYPE 269 411 268

Figure S186.  Get High-res Image Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'HPS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 1

Table S1545.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
HPS3 MUTATED 1 0 2 3 3
HPS3 WILD-TYPE 151 174 388 122 113

Figure S187.  Get High-res Image Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1546.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
HPS3 MUTATED 1 1 4
HPS3 WILD-TYPE 247 216 183
'HPS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S1547.  Gene #142: 'HPS3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
HPS3 MUTATED 4 1 1 0 0 0
HPS3 WILD-TYPE 111 62 188 117 108 60
'OR2T35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1548.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
OR2T35 MUTATED 0 0 1 1 1 0 0 0
OR2T35 WILD-TYPE 21 38 113 96 107 73 19 39
'OR2T35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 1

Table S1549.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
OR2T35 MUTATED 0 0 2 0 1
OR2T35 WILD-TYPE 96 152 114 89 55
'OR2T35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S1550.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
OR2T35 MUTATED 1 2 0 1 0
OR2T35 WILD-TYPE 366 224 91 240 37
'OR2T35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1551.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
OR2T35 MUTATED 1 0 1 0 2 0 0
OR2T35 WILD-TYPE 178 135 214 156 223 48 15
'OR2T35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1552.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
OR2T35 MUTATED 1 0 1 1 1 0
OR2T35 WILD-TYPE 167 222 187 171 170 52
'OR2T35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1553.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
OR2T35 MUTATED 0 3 1
OR2T35 WILD-TYPE 270 410 273
'OR2T35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1554.  Gene #143: 'OR2T35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
OR2T35 MUTATED 0 0 3 0 1
OR2T35 WILD-TYPE 152 174 387 125 115
'PPIL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1555.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PPIL2 MUTATED 1 1 1 3 0
PPIL2 WILD-TYPE 366 225 90 238 37
'PPIL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1556.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PPIL2 MUTATED 2 2 1 0 0
PPIL2 WILD-TYPE 114 179 156 83 111
'PPIL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1557.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PPIL2 MUTATED 3 0 0 1 2 0 0
PPIL2 WILD-TYPE 176 135 215 155 223 48 15
'PPIL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S1558.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PPIL2 MUTATED 2 1 0 1 2 0
PPIL2 WILD-TYPE 166 221 188 171 169 52
'PPIL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1559.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PPIL2 MUTATED 1 3 1
PPIL2 WILD-TYPE 269 410 273
'PPIL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1560.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PPIL2 MUTATED 1 1 2 0 1
PPIL2 WILD-TYPE 151 173 388 125 115
'PPIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 1

Table S1561.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PPIL2 MUTATED 0 3 0
PPIL2 WILD-TYPE 248 214 187
'PPIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1562.  Gene #144: 'PPIL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PPIL2 MUTATED 1 0 0 1 1 0
PPIL2 WILD-TYPE 114 63 189 116 107 60
'ZNF397 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.072 (Fisher's exact test), Q value = 1

Table S1563.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZNF397 MUTATED 0 1 0 0 1 0 1 0
ZNF397 WILD-TYPE 21 37 114 97 107 73 18 39
'ZNF397 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1564.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZNF397 MUTATED 0 2 1 0 0
ZNF397 WILD-TYPE 96 150 115 89 56
'ZNF397 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1565.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZNF397 MUTATED 2 4 0 1 0
ZNF397 WILD-TYPE 365 222 91 240 37
'ZNF397 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1566.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZNF397 MUTATED 0 2 3 0 1
ZNF397 WILD-TYPE 116 179 154 83 110
'ZNF397 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1567.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZNF397 MUTATED 0 1 2 2 2 0 0
ZNF397 WILD-TYPE 179 134 213 154 223 48 15
'ZNF397 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1568.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZNF397 MUTATED 0 3 0 2 2 0
ZNF397 WILD-TYPE 168 219 188 170 169 52
'ZNF397 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1569.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZNF397 MUTATED 3 3 1
ZNF397 WILD-TYPE 267 410 273
'ZNF397 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S1570.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZNF397 MUTATED 0 3 4 0 0
ZNF397 WILD-TYPE 152 171 386 125 116
'ZNF397 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1571.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ZNF397 MUTATED 2 2 0
ZNF397 WILD-TYPE 246 215 187
'ZNF397 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1572.  Gene #145: 'ZNF397 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ZNF397 MUTATED 0 0 2 2 0 0
ZNF397 WILD-TYPE 115 63 187 115 108 60
'MLL MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1573.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLL MUTATED 0 2 2 1 1 2 0 1
MLL WILD-TYPE 21 36 112 96 107 71 19 38
'MLL MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1574.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLL MUTATED 1 5 2 1 0
MLL WILD-TYPE 95 147 114 88 56
'MLL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1575.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MLL MUTATED 3 5 2 7 0
MLL WILD-TYPE 364 221 89 234 37
'MLL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1576.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLL MUTATED 5 1 3 1 2
MLL WILD-TYPE 111 180 154 82 109
'MLL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1577.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MLL MUTATED 3 1 2
MLL WILD-TYPE 143 128 116
'MLL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1578.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MLL MUTATED 1 1 1 1 2
MLL WILD-TYPE 58 108 89 103 29
'MLL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1579.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MLL MUTATED 5 2 1 4 4 0 0
MLL WILD-TYPE 174 133 214 152 221 48 15
'MLL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1580.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MLL MUTATED 5 4 0 3 3 1
MLL WILD-TYPE 163 218 188 169 168 51
'MLL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1581.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MLL MUTATED 3 7 6
MLL WILD-TYPE 267 406 268
'MLL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1582.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MLL MUTATED 0 5 6 3 2
MLL WILD-TYPE 152 169 384 122 114
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1583.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MLL MUTATED 4 1 4
MLL WILD-TYPE 244 216 183
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1584.  Gene #146: 'MLL MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MLL MUTATED 4 1 2 2 0 0
MLL WILD-TYPE 111 62 187 115 108 60
'ACVR1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S1585.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACVR1B MUTATED 0 0 1 2 2 0 0 0
ACVR1B WILD-TYPE 21 38 113 95 106 73 19 39
'ACVR1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1586.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACVR1B MUTATED 1 2 1 1 0
ACVR1B WILD-TYPE 95 150 115 88 56
'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1587.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ACVR1B MUTATED 2 2 0 2 0
ACVR1B WILD-TYPE 365 224 91 239 37
'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1588.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACVR1B MUTATED 1 1 1 1 0
ACVR1B WILD-TYPE 115 180 156 82 111
'ACVR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1589.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ACVR1B MUTATED 2 2 0
ACVR1B WILD-TYPE 144 127 118
'ACVR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.097 (Fisher's exact test), Q value = 1

Table S1590.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ACVR1B MUTATED 2 0 2 0 0
ACVR1B WILD-TYPE 57 109 88 104 31
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1591.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ACVR1B MUTATED 3 0 2 1 1 0 0
ACVR1B WILD-TYPE 176 135 213 155 224 48 15
'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1592.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ACVR1B MUTATED 3 0 1 2 1 0
ACVR1B WILD-TYPE 165 222 187 170 170 52
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1593.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ACVR1B MUTATED 0 4 3
ACVR1B WILD-TYPE 270 409 271
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1594.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ACVR1B MUTATED 0 1 3 1 2
ACVR1B WILD-TYPE 152 173 387 124 114
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1595.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ACVR1B MUTATED 1 0 2
ACVR1B WILD-TYPE 247 217 185
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S1596.  Gene #147: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ACVR1B MUTATED 1 0 1 0 0 1
ACVR1B WILD-TYPE 114 63 188 117 108 59
'GPR158 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1597.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GPR158 MUTATED 1 1 0 1 0
GPR158 WILD-TYPE 366 225 91 240 37
'GPR158 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1598.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GPR158 MUTATED 2 0 0 0 1 0 0
GPR158 WILD-TYPE 177 135 215 156 224 48 15
'GPR158 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1599.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GPR158 MUTATED 2 0 0 1 0 0
GPR158 WILD-TYPE 166 222 188 171 171 52
'GPR158 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1600.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GPR158 MUTATED 2 0 1
GPR158 WILD-TYPE 268 413 273
'GPR158 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 1

Table S1601.  Gene #148: 'GPR158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GPR158 MUTATED 2 0 0 1 0
GPR158 WILD-TYPE 150 174 390 124 116
'ARHGEF15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S1602.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ARHGEF15 MUTATED 1 0 4 2 1 0 0 0
ARHGEF15 WILD-TYPE 20 38 110 95 107 73 19 39
'ARHGEF15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1603.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ARHGEF15 MUTATED 4 1 1 2 0
ARHGEF15 WILD-TYPE 92 151 115 87 56
'ARHGEF15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1604.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ARHGEF15 MUTATED 3 4 0 2 0
ARHGEF15 WILD-TYPE 364 222 91 239 37
'ARHGEF15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1605.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ARHGEF15 MUTATED 1 0 1 1 1
ARHGEF15 WILD-TYPE 115 181 156 82 110
'ARHGEF15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1606.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ARHGEF15 MUTATED 2 3 2
ARHGEF15 WILD-TYPE 144 126 116
'ARHGEF15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1607.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ARHGEF15 MUTATED 2 1 2 2 0
ARHGEF15 WILD-TYPE 57 108 88 102 31
'ARHGEF15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1608.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ARHGEF15 MUTATED 2 0 1 2 4 0 0
ARHGEF15 WILD-TYPE 177 135 214 154 221 48 15
'ARHGEF15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1609.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ARHGEF15 MUTATED 2 0 1 3 3 0
ARHGEF15 WILD-TYPE 166 222 187 169 168 52
'ARHGEF15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1610.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ARHGEF15 MUTATED 0 5 3
ARHGEF15 WILD-TYPE 270 408 271
'ARHGEF15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1611.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ARHGEF15 MUTATED 0 1 5 1 1
ARHGEF15 WILD-TYPE 152 173 385 124 115
'ARHGEF15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1612.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ARHGEF15 MUTATED 1 0 2
ARHGEF15 WILD-TYPE 247 217 185
'ARHGEF15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1613.  Gene #149: 'ARHGEF15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ARHGEF15 MUTATED 1 0 2 0 0 0
ARHGEF15 WILD-TYPE 114 63 187 117 108 60
'TXNDC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S1614.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TXNDC2 MUTATED 2 0 1 1 0
TXNDC2 WILD-TYPE 365 226 90 240 37
'TXNDC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1615.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TXNDC2 MUTATED 2 1 1 0 0
TXNDC2 WILD-TYPE 114 180 156 83 111
'TXNDC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S1616.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TXNDC2 MUTATED 1 0 1 2 0 0 0
TXNDC2 WILD-TYPE 178 135 214 154 225 48 15
'TXNDC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1617.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TXNDC2 MUTATED 1 0 1 1 0 1
TXNDC2 WILD-TYPE 167 222 187 171 171 51
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1618.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TXNDC2 MUTATED 0 1 3
TXNDC2 WILD-TYPE 270 412 271
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1619.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TXNDC2 MUTATED 0 0 2 1 1
TXNDC2 WILD-TYPE 152 174 388 124 115
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1620.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TXNDC2 MUTATED 1 0 3
TXNDC2 WILD-TYPE 247 217 184
'TXNDC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S1621.  Gene #150: 'TXNDC2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TXNDC2 MUTATED 1 0 2 0 0 1
TXNDC2 WILD-TYPE 114 63 187 117 108 59
'COL9A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1622.  Gene #151: 'COL9A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
COL9A2 MUTATED 0 1 0 2 0
COL9A2 WILD-TYPE 367 225 91 239 37
'COL9A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1623.  Gene #151: 'COL9A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
COL9A2 MUTATED 2 0 1 0 0
COL9A2 WILD-TYPE 114 181 156 83 111
'COL9A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1624.  Gene #151: 'COL9A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
COL9A2 MUTATED 2 0 1 0 0 0 0
COL9A2 WILD-TYPE 177 135 214 156 225 48 15
'COL9A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1625.  Gene #151: 'COL9A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
COL9A2 MUTATED 2 0 0 0 1 0
COL9A2 WILD-TYPE 166 222 188 172 170 52
'PARP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1626.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PARP4 MUTATED 0 0 1 0 1 2 0 0
PARP4 WILD-TYPE 21 38 113 97 107 71 19 39
'PARP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1627.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PARP4 MUTATED 1 1 2 0 0
PARP4 WILD-TYPE 95 151 114 89 56
'PARP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1628.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PARP4 MUTATED 5 2 3 2 0
PARP4 WILD-TYPE 362 224 88 239 37
'PARP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S1629.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PARP4 MUTATED 0 2 3 0 4
PARP4 WILD-TYPE 116 179 154 83 107
'PARP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S1630.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PARP4 MUTATED 0 1 3 5 2 1 0
PARP4 WILD-TYPE 179 134 212 151 223 47 15
'PARP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 1

Table S1631.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PARP4 MUTATED 0 4 1 6 1 0
PARP4 WILD-TYPE 168 218 187 166 170 52
'PARP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S1632.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PARP4 MUTATED 5 7 0
PARP4 WILD-TYPE 265 406 274

Figure S188.  Get High-res Image Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PARP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1633.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PARP4 MUTATED 2 1 8 0 1
PARP4 WILD-TYPE 150 173 382 125 115
'PARP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1634.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PARP4 MUTATED 4 4 0
PARP4 WILD-TYPE 244 213 187
'PARP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1635.  Gene #152: 'PARP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PARP4 MUTATED 0 1 3 1 3 0
PARP4 WILD-TYPE 115 62 186 116 105 60
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = BRCA-TP.transferedmergedcluster.txt

  • Number of patients = 976

  • Number of significantly mutated genes = 152

  • Number of Molecular subtypes = 12

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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