name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme_name	cov_idx	N_tot	N_c	nsil_tot	nnon_tot	n_tot	rate_sil	rate_non	rate_tot	log_rate_tot	n_c	n_ind	N_ind	rate_c	rate_ind
TCGA-A1-A0SB-01A-11D-A142-09	17	17	0	15	0	exome+100bp flanks	2	35956486	...	2	9	14	5.562279e-08	2.503025e-07	3.893595e-07	-6.409649e+00	...	3	32224023	...	9.309825e-08
TCGA-A1-A0SD-01A-11D-A10Y-09	27	27	0	25	0	exome+100bp flanks	2	35956486	...	2	19	24	5.562279e-08	5.284165e-07	6.674735e-07	-6.175566e+00	...	3	32224023	...	9.309825e-08
TCGA-A1-A0SE-01A-11D-A099-09	27	27	0	18	0	exome+100bp flanks	2	35956486	...	8	16	25	2.224912e-07	4.449823e-07	6.952849e-07	-6.157837e+00	...	1	32224023	...	3.103275e-08
TCGA-A1-A0SF-01A-11D-A142-09	38	37	1	31	2.631579e-02	exome+100bp flanks	2	35956486	...	5	26	33	1.390570e-07	7.230962e-07	9.177760e-07	-6.037263e+00	...	2	32224023	...	6.206550e-08
TCGA-A1-A0SG-01A-11D-A142-09	33	32	1	26	3.030303e-02	exome+100bp flanks	2	35956486	...	5	20	30	1.390570e-07	5.562279e-07	8.343418e-07	-6.078656e+00	...	5	32224023	...	1.551637e-07
TCGA-A1-A0SH-01A-11D-A099-09	94	90	4	74	4.255319e-02	exome+100bp flanks	2	35956486	...	16	64	84	4.449823e-07	1.779929e-06	2.336157e-06	-5.631498e+00	...	3	32224023	...	9.309825e-08
TCGA-A1-A0SI-01A-11D-A142-09	194	190	4	145	2.061856e-02	coding only	1	28826511	...	43	138	187	1.491682e-06	4.787260e-06	6.487084e-06	-5.187950e+00	...	3	28770325	...	1.042741e-07
TCGA-A1-A0SJ-01A-11D-A099-09	31	31	0	27	0	exome+100bp flanks	2	35956486	...	3	22	27	8.343418e-08	6.118507e-07	7.509076e-07	-6.124413e+00	...	2	32224023	...	6.206550e-08
TCGA-A1-A0SK-01A-12D-A099-09	161	140	21	94	1.304348e-01	exome+100bp flanks	2	35956486	...	30	69	108	8.343418e-07	1.918986e-06	3.003631e-06	-5.522353e+00	...	4	32224023	...	1.241310e-07
TCGA-A1-A0SM-01A-11D-A099-09	32	29	3	23	9.375000e-02	exome+100bp flanks	2	35956486	...	6	14	29	1.668684e-07	3.893595e-07	8.065304e-07	-6.093379e+00	...	9	32224023	...	2.792947e-07
TCGA-A1-A0SN-01A-11D-A142-09	50	50	0	40	0	coding only	1	28826511	...	10	34	46	3.469029e-07	1.179470e-06	1.595753e-06	-5.797034e+00	...	2	28770325	...	6.951607e-08
TCGA-A1-A0SP-01A-11D-A099-09	44	42	2	33	4.545455e-02	exome+100bp flanks	2	35956486	...	7	23	36	1.946798e-07	6.396621e-07	1.001210e-06	-5.999475e+00	...	6	32224023	...	1.861965e-07
TCGA-A1-A0SQ-01A-21D-A142-09	26	26	0	20	0	exome+100bp flanks	2	35956486	...	6	15	26	1.668684e-07	4.171709e-07	7.230962e-07	-6.140804e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A04N-01A-11D-A10Y-09	41	41	0	34	0	exome+100bp flanks	2	35956486	...	6	26	36	1.668684e-07	7.230962e-07	1.001210e-06	-5.999475e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A04P-01A-31D-A128-09	113	110	3	88	2.654867e-02	coding only	1	28826511	...	20	78	103	6.938058e-07	2.705843e-06	3.573100e-06	-5.446955e+00	...	4	28770325	...	1.390321e-07
TCGA-A2-A04Q-01A-21W-A050-09	12	12	0	8	0	exome+100bp flanks	2	35956486	...	4	5	11	1.112456e-07	1.390570e-07	3.059253e-07	-6.514385e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A04R-01A-41D-A117-09	81	80	1	65	1.234568e-02	coding only	1	28826511	...	15	63	80	5.203543e-07	2.185488e-06	2.775223e-06	-5.556702e+00	...	1	28770325	...	3.475804e-08
TCGA-A2-A04T-01A-21W-A050-09	93	87	6	70	6.451613e-02	exome+100bp flanks	2	35956486	...	17	62	87	4.727937e-07	1.724306e-06	2.419591e-06	-5.616258e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A04U-01A-11D-A10Y-09	55	55	0	46	0	coding only	1	28826511	...	9	38	53	3.122126e-07	1.318231e-06	1.838585e-06	-5.735516e+00	...	6	28770325	...	2.085482e-07
TCGA-A2-A04V-01A-21W-A050-09	34	32	2	27	5.882353e-02	exome+100bp flanks	2	35956486	...	5	18	30	1.390570e-07	5.006051e-07	8.343418e-07	-6.078656e+00	...	6	32224023	...	1.861965e-07
TCGA-A2-A04W-01A-31D-A10Y-09	108	106	2	84	1.851852e-02	coding only	1	28826511	...	19	81	101	6.591155e-07	2.809913e-06	3.503719e-06	-5.455471e+00	...	1	28770325	...	3.475804e-08
TCGA-A2-A04X-01A-21W-A050-09	30	29	1	21	3.333333e-02	exome+100bp flanks	2	35956486	...	8	18	29	2.224912e-07	5.006051e-07	8.065304e-07	-6.093379e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A04Y-01A-21W-A050-09	47	46	1	43	2.127660e-02	exome+100bp flanks	2	35956486	...	3	23	45	8.343418e-08	6.396621e-07	1.251513e-06	-5.902565e+00	...	18	32224023	...	5.585895e-07
TCGA-A2-A0CK-01A-11D-A228-09	26	23	3	14	1.153846e-01	exome+100bp flanks	2	35956486	...	9	12	23	2.503025e-07	3.337367e-07	6.396621e-07	-6.194049e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A0CL-01A-11D-A10Y-09	23	20	3	16	1.304348e-01	exome+100bp flanks	2	35956486	...	4	15	19	1.112456e-07	4.171709e-07	5.284165e-07	-6.277024e+00	...	0	32224023	...	0
TCGA-A2-A0CM-01A-31W-A050-09	54	53	1	46	1.851852e-02	coding only	1	28826511	...	7	32	50	2.428320e-07	1.110089e-06	1.734514e-06	-5.760822e+00	...	11	28770325	...	3.823384e-07
TCGA-A2-A0CO-01A-13D-A228-09	37	30	7	21	1.891892e-01	exome+100bp flanks	2	35956486	...	9	16	33	2.503025e-07	4.449823e-07	9.177760e-07	-6.037263e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A0CP-01A-11W-A050-09	84	80	4	76	4.761905e-02	exome+100bp flanks	2	35956486	...	4	21	75	1.112456e-07	5.840393e-07	2.085855e-06	-5.680716e+00	...	49	32224023	...	1.520605e-06
TCGA-A2-A0CQ-01A-21W-A050-09	37	36	1	26	2.702703e-02	exome+100bp flanks	2	35956486	...	8	19	32	2.224912e-07	5.284165e-07	8.899646e-07	-6.050627e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A0CR-01A-11D-A228-09	120	112	8	91	6.666667e-02	exome+100bp flanks	2	35956486	...	21	84	112	5.840393e-07	2.336157e-06	3.114876e-06	-5.506559e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A0CS-01A-11D-A10Y-09	34	33	1	26	2.941176e-02	exome+100bp flanks	2	35956486	...	7	20	33	1.946798e-07	5.562279e-07	9.177760e-07	-6.037263e+00	...	6	32224023	...	1.861965e-07
TCGA-A2-A0CT-01A-31W-A071-09	77	77	0	59	0	coding only	1	28826511	...	17	51	74	5.897349e-07	1.769205e-06	2.567081e-06	-5.590560e+00	...	6	28770325	...	2.085482e-07
TCGA-A2-A0CU-01A-12W-A050-09	40	40	0	35	0	exome+100bp flanks	2	35956486	...	5	15	36	1.390570e-07	4.171709e-07	1.001210e-06	-5.999475e+00	...	16	32224023	...	4.965240e-07
TCGA-A2-A0CV-01A-31D-A10Y-09	23	22	1	20	4.347826e-02	exome+100bp flanks	2	35956486	...	2	19	22	5.562279e-08	5.284165e-07	6.118507e-07	-6.213355e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A0CW-01A-21D-A10Y-09	60	59	1	50	1.666667e-02	coding only	1	28826511	...	8	43	53	2.775223e-07	1.491682e-06	1.838585e-06	-5.735516e+00	...	2	28770325	...	6.951607e-08
TCGA-A2-A0CX-01A-21W-A019-09	203	199	4	155	1.970443e-02	coding only	1	28826511	...	44	141	192	1.526373e-06	4.891331e-06	6.660536e-06	-5.176491e+00	...	6	28770325	...	2.085482e-07
TCGA-A2-A0CZ-01A-11W-A050-09	17	16	1	14	5.882353e-02	exome+100bp flanks	2	35956486	...	2	7	14	5.562279e-08	1.946798e-07	3.893595e-07	-6.409649e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A0D0-01A-11W-A019-09	66	65	1	52	1.515152e-02	coding only	1	28826511	...	13	45	65	4.509738e-07	1.561063e-06	2.254869e-06	-5.646879e+00	...	6	28770325	...	2.085482e-07
TCGA-A2-A0D1-01A-11W-A050-09	75	73	2	57	2.666667e-02	coding only	1	28826511	...	15	29	70	5.203543e-07	1.006018e-06	2.428320e-06	-5.614694e+00	...	25	28770325	...	8.689509e-07
TCGA-A2-A0D2-01A-21W-A050-09	80	80	0	67	0	coding only	1	28826511	...	13	59	76	4.509738e-07	2.046727e-06	2.636462e-06	-5.578978e+00	...	4	28770325	...	1.390321e-07
TCGA-A2-A0D3-01A-11D-A10Y-09	27	26	1	19	3.703704e-02	exome+100bp flanks	2	35956486	...	7	15	26	1.946798e-07	4.171709e-07	7.230962e-07	-6.140804e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A0D4-01A-11W-A019-09	29	29	0	25	0	exome+100bp flanks	2	35956486	...	4	19	29	1.112456e-07	5.284165e-07	8.065304e-07	-6.093379e+00	...	6	32224023	...	1.861965e-07
TCGA-A2-A0EM-01A-11W-A050-09	25	25	0	25	0	exome+100bp flanks	2	35956486	...	0	19	23	0	5.284165e-07	6.396621e-07	-6.194049e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A0EN-01A-13D-A099-09	36	32	4	26	1.111111e-01	exome+100bp flanks	2	35956486	...	5	20	30	1.390570e-07	5.562279e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A0EO-01A-11W-A050-09	30	29	1	23	3.333333e-02	exome+100bp flanks	2	35956486	...	6	17	29	1.668684e-07	4.727937e-07	8.065304e-07	-6.093379e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A0EP-01A-52D-A22X-09	9	3	6	3	6.666667e-01	all capture (no interval list)	3	65785381	...	0	3	6	0	4.560284e-08	9.120567e-08	-7.039978e+00	...	0	31868074	...	0
TCGA-A2-A0EQ-01A-11W-A050-09	82	81	1	66	1.219512e-02	coding only	1	28826511	...	15	57	77	5.203543e-07	1.977346e-06	2.671152e-06	-5.573301e+00	...	5	28770325	...	1.737902e-07
TCGA-A2-A0ER-01A-21W-A050-09	28	27	1	22	3.571429e-02	exome+100bp flanks	2	35956486	...	5	17	27	1.390570e-07	4.727937e-07	7.509076e-07	-6.124413e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A0ES-01A-11D-A10Y-09	5	5	0	4	0	exome+100bp flanks	2	35956486	...	1	2	4	2.781139e-08	5.562279e-08	1.112456e-07	-6.953717e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A0ET-01A-31D-A045-09	32	30	2	24	6.250000e-02	exome+100bp flanks	2	35956486	...	6	19	29	1.668684e-07	5.284165e-07	8.065304e-07	-6.093379e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A0EU-01A-22W-A071-09	40	40	0	33	0	exome+100bp flanks	2	35956486	...	7	27	39	1.946798e-07	7.509076e-07	1.084644e-06	-5.964713e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A0EV-01A-11W-A050-09	59	59	0	52	0	coding only	1	28826511	...	7	41	57	2.428320e-07	1.422302e-06	1.977346e-06	-5.703917e+00	...	9	28770325	...	3.128223e-07
TCGA-A2-A0EW-01A-21D-A10Y-09	14	14	0	11	0	exome+100bp flanks	2	35956486	...	3	10	13	8.343418e-08	2.781139e-07	3.615481e-07	-6.441834e+00	...	0	32224023	...	0
TCGA-A2-A0EX-01A-21W-A050-09	28	28	0	25	0	exome+100bp flanks	2	35956486	...	3	15	27	8.343418e-08	4.171709e-07	7.509076e-07	-6.124413e+00	...	9	32224023	...	2.792947e-07
TCGA-A2-A0EY-01A-11W-A050-09	210	208	2	154	9.523810e-03	coding only	1	28826511	...	53	136	201	1.838585e-06	4.717879e-06	6.972748e-06	-5.156596e+00	...	12	28770325	...	4.170964e-07
TCGA-A2-A0ST-01A-12D-A099-09	8	7	1	4	1.250000e-01	exome+100bp flanks	2	35956486	...	3	4	7	8.343418e-08	1.112456e-07	1.946798e-07	-6.710679e+00	...	0	32224023	...	0
TCGA-A2-A0SU-01A-11D-A099-09	23	23	0	18	0	exome+100bp flanks	2	35956486	...	5	12	23	1.390570e-07	3.337367e-07	6.396621e-07	-6.194049e+00	...	6	32224023	...	1.861965e-07
TCGA-A2-A0SV-01A-11D-A099-09	35	35	0	25	0	exome+100bp flanks	2	35956486	...	10	20	35	2.781139e-07	5.562279e-07	9.733988e-07	-6.011709e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A0SW-01A-11D-A099-09	54	53	1	42	1.851852e-02	coding only	1	28826511	...	10	30	47	3.469029e-07	1.040709e-06	1.630444e-06	-5.787694e+00	...	7	28770325	...	2.433063e-07
TCGA-A2-A0SX-01A-12D-A099-09	25	24	1	19	4.000000e-02	exome+100bp flanks	2	35956486	...	5	18	23	1.390570e-07	5.006051e-07	6.396621e-07	-6.194049e+00	...	0	32224023	...	0
TCGA-A2-A0SY-01A-31D-A099-09	131	129	2	98	1.526718e-02	coding only	1	28826511	...	26	84	115	9.019475e-07	2.913984e-06	3.989383e-06	-5.399094e+00	...	5	28770325	...	1.737902e-07
TCGA-A2-A0T0-01A-22D-A099-09	174	171	3	138	1.724138e-02	coding only	1	28826511	...	29	119	158	1.006018e-06	4.128144e-06	5.481066e-06	-5.261135e+00	...	10	28770325	...	3.475804e-07
TCGA-A2-A0T1-01A-21D-A099-09	16	16	0	11	0	exome+100bp flanks	2	35956486	...	5	7	16	1.390570e-07	1.946798e-07	4.449823e-07	-6.351657e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A0T2-01A-11W-A097-09	36	35	1	27	2.777778e-02	exome+100bp flanks	2	35956486	...	8	15	34	2.224912e-07	4.171709e-07	9.455874e-07	-6.024298e+00	...	11	32224023	...	3.413602e-07
TCGA-A2-A0T3-01A-21D-A10Y-09	36	35	1	26	2.777778e-02	exome+100bp flanks	2	35956486	...	9	22	33	2.503025e-07	6.118507e-07	9.177760e-07	-6.037263e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A0T4-01A-31D-A099-09	32	32	0	26	0	exome+100bp flanks	2	35956486	...	6	21	31	1.668684e-07	5.840393e-07	8.621532e-07	-6.064416e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A0T5-01A-21D-A099-09	1557	1461	96	1144	6.165703e-02	exome+100bp flanks	2	35956486	...	298	1072	1444	8.287795e-06	2.981381e-05	4.015965e-05	-4.396210e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A0T6-01A-11D-A099-09	121	116	5	95	4.132231e-02	exome+100bp flanks	2	35956486	...	19	83	105	5.284165e-07	2.308346e-06	2.920196e-06	-5.534588e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A0T7-01A-21D-A099-09	23	23	0	18	0	exome+100bp flanks	2	35956486	...	4	11	20	1.112456e-07	3.059253e-07	5.562279e-07	-6.254747e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A0YC-01A-11D-A117-09	18	18	0	16	0	exome+100bp flanks	2	35956486	...	2	13	18	5.562279e-08	3.615481e-07	5.006051e-07	-6.300505e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A0YD-01A-11D-A10G-09	64	62	2	44	3.125000e-02	exome+100bp flanks	2	35956486	...	18	29	60	5.006051e-07	8.065304e-07	1.668684e-06	-5.777626e+00	...	13	32224023	...	4.034257e-07
TCGA-A2-A0YE-01A-11D-A10G-09	52	45	7	34	1.346154e-01	exome+100bp flanks	2	35956486	...	9	29	43	2.503025e-07	8.065304e-07	1.195890e-06	-5.922309e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A0YF-01A-21D-A10G-09	28	26	2	16	7.142857e-02	exome+100bp flanks	2	35956486	...	9	11	24	2.503025e-07	3.059253e-07	6.674735e-07	-6.175566e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A0YG-01A-21D-A10G-09	51	50	1	37	1.960784e-02	coding only	1	28826511	...	10	33	45	3.469029e-07	1.144780e-06	1.561063e-06	-5.806580e+00	...	1	28770325	...	3.475804e-08
TCGA-A2-A0YH-01A-11D-A10G-09	60	60	0	50	0	coding only	1	28826511	...	10	43	58	3.469029e-07	1.491682e-06	2.012037e-06	-5.696364e+00	...	5	28770325	...	1.737902e-07
TCGA-A2-A0YI-01A-31D-A10M-09	14	14	0	9	0	exome+100bp flanks	2	35956486	...	5	8	14	1.390570e-07	2.224912e-07	3.893595e-07	-6.409649e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A0YJ-01A-11D-A10G-09	54	54	0	46	0	coding only	1	28826511	...	7	44	52	2.428320e-07	1.526373e-06	1.803895e-06	-5.743789e+00	...	1	28770325	...	3.475804e-08
TCGA-A2-A0YK-01A-22D-A117-09	196	192	4	141	2.040816e-02	coding only	1	28826511	...	51	130	182	1.769205e-06	4.509738e-06	6.313633e-06	-5.199721e+00	...	0	28770325	...	0
TCGA-A2-A0YL-01A-21D-A10G-09	13	13	0	8	0	exome+100bp flanks	2	35956486	...	5	8	13	1.390570e-07	2.224912e-07	3.615481e-07	-6.441834e+00	...	0	32224023	...	0
TCGA-A2-A0YM-01A-11D-A10G-09	71	71	0	58	0	coding only	1	28826511	...	13	53	69	4.509738e-07	1.838585e-06	2.393630e-06	-5.620943e+00	...	3	28770325	...	1.042741e-07
TCGA-A2-A0YT-01A-11D-A10G-09	53	50	3	43	5.660377e-02	exome+100bp flanks	2	35956486	...	7	40	50	1.946798e-07	1.112456e-06	1.390570e-06	-5.856807e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A1FV-01A-11D-A13L-09	40	38	2	31	5.000000e-02	exome+100bp flanks	2	35956486	...	6	26	38	1.668684e-07	7.230962e-07	1.056833e-06	-5.975994e+00	...	5	32224023	...	1.551637e-07
TCGA-A2-A1FW-01A-11D-A13L-09	66	66	0	43	0	coding only	1	28826511	...	21	42	64	7.284961e-07	1.456992e-06	2.220179e-06	-5.653612e+00	...	1	28770325	...	3.475804e-08
TCGA-A2-A1FX-01A-11D-A13L-09	20	20	0	17	0	exome+100bp flanks	2	35956486	...	3	16	20	8.343418e-08	4.449823e-07	5.562279e-07	-6.254747e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A1FZ-01A-51D-A17G-09	31	30	1	25	3.225806e-02	exome+100bp flanks	2	35956486	...	4	17	27	1.112456e-07	4.727937e-07	7.509076e-07	-6.124413e+00	...	6	32224023	...	1.861965e-07
TCGA-A2-A1G0-01A-11D-A13L-09	22	21	1	20	4.545455e-02	exome+100bp flanks	2	35956486	...	1	17	20	2.781139e-08	4.727937e-07	5.562279e-07	-6.254747e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A1G1-01A-21D-A13L-09	30	29	1	21	3.333333e-02	exome+100bp flanks	2	35956486	...	8	17	28	2.224912e-07	4.727937e-07	7.787190e-07	-6.108619e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A1G4-01A-11D-A13L-09	36	36	0	26	0	exome+100bp flanks	2	35956486	...	10	21	34	2.781139e-07	5.840393e-07	9.455874e-07	-6.024298e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A1G6-01A-11D-A13L-09	5	4	1	4	2.000000e-01	exome+100bp flanks	2	35956486	...	0	3	4	0	8.343418e-08	1.112456e-07	-6.953717e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A259-01A-11D-A16D-09	14	13	1	11	7.142857e-02	exome+100bp flanks	2	35956486	...	2	10	12	5.562279e-08	2.781139e-07	3.337367e-07	-6.476596e+00	...	0	32224023	...	0
TCGA-A2-A25A-01A-12D-A16D-09	103	99	4	82	3.883495e-02	exome+100bp flanks	2	35956486	...	16	79	98	4.449823e-07	2.197100e-06	2.725517e-06	-5.564551e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A25B-01A-11D-A167-09	87	83	4	68	4.597701e-02	exome+100bp flanks	2	35956486	...	15	59	81	4.171709e-07	1.640872e-06	2.252723e-06	-5.647292e+00	...	7	32224023	...	2.172292e-07
TCGA-A2-A25C-01A-11D-A167-09	24	24	0	20	0	exome+100bp flanks	2	35956486	...	4	19	23	1.112456e-07	5.284165e-07	6.396621e-07	-6.194049e+00	...	0	32224023	...	0
TCGA-A2-A25D-01A-12D-A16D-09	55	55	0	40	0	coding only	1	28826511	...	12	31	48	4.162835e-07	1.075399e-06	1.665134e-06	-5.778551e+00	...	5	28770325	...	1.737902e-07
TCGA-A2-A25E-01A-11D-A167-09	55	54	1	46	1.818182e-02	coding only	1	28826511	...	8	37	52	2.775223e-07	1.283541e-06	1.803895e-06	-5.743789e+00	...	7	28770325	...	2.433063e-07
TCGA-A2-A25F-01A-11D-A167-09	3	3	0	0	0	exome+100bp flanks	2	35956486	...	3	0	3	8.343418e-08	0	8.343418e-08	-7.078656e+00	...	0	32224023	...	0
TCGA-A2-A3KC-01A-11D-A20S-09	41	32	9	26	2.195122e-01	exome+100bp flanks	2	35956486	...	5	14	31	1.390570e-07	3.893595e-07	8.621532e-07	-6.064416e+00	...	7	32224023	...	2.172292e-07
TCGA-A2-A3KD-01A-12D-A20S-09	18	11	7	7	3.888889e-01	all capture (no interval list)	3	65785381	...	3	6	10	4.560284e-08	9.120567e-08	1.520095e-07	-6.818129e+00	...	0	31868074	...	0
TCGA-A2-A3XS-01A-11D-A22X-09	34	27	7	22	2.058824e-01	exome+100bp flanks	2	35956486	...	4	19	29	1.112456e-07	5.284165e-07	8.065304e-07	-6.093379e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A3XT-01A-11D-A22X-09	103	87	16	73	1.553398e-01	exome+100bp flanks	2	35956486	...	14	66	88	3.893595e-07	1.835552e-06	2.447403e-06	-5.611295e+00	...	0	32224023	...	0
TCGA-A2-A3XU-01A-12D-A22X-09	31	25	6	20	1.935484e-01	exome+100bp flanks	2	35956486	...	4	15	26	1.112456e-07	4.171709e-07	7.230962e-07	-6.140804e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A3XV-01A-21D-A23C-09	56	47	9	42	1.607143e-01	exome+100bp flanks	2	35956486	...	5	37	51	1.390570e-07	1.029022e-06	1.418381e-06	-5.848207e+00	...	4	32224023	...	1.241310e-07
TCGA-A2-A3XW-01A-11D-A23C-09	12	6	6	4	5.000000e-01	all capture (no interval list)	3	65785381	...	2	3	8	3.040189e-08	4.560284e-08	1.216076e-07	-6.915039e+00	...	0	31868074	...	0
TCGA-A2-A3XX-01A-21D-A23C-09	41	38	3	32	7.317073e-02	exome+100bp flanks	2	35956486	...	4	25	32	1.112456e-07	6.952849e-07	8.899646e-07	-6.050627e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A3XY-01A-11D-A23C-09	60	52	8	37	1.333333e-01	exome+100bp flanks	2	35956486	...	14	31	53	3.893595e-07	8.621532e-07	1.474004e-06	-5.831501e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A3XZ-01A-42D-A23C-09	52	42	10	33	1.923077e-01	exome+100bp flanks	2	35956486	...	9	30	46	2.503025e-07	8.343418e-07	1.279324e-06	-5.893019e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A3Y0-01A-11D-A23C-09	199	177	22	145	1.105528e-01	exome+100bp flanks	2	35956486	...	31	132	185	8.621532e-07	3.671104e-06	5.145108e-06	-5.288606e+00	...	6	32224023	...	1.861965e-07
TCGA-A2-A4RW-01A-21D-A25Q-09	126	117	9	94	7.142857e-02	exome+100bp flanks	2	35956486	...	21	85	113	5.840393e-07	2.363968e-06	3.142688e-06	-5.502699e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A4RX-01A-11D-A25Q-09	22	17	5	13	2.272727e-01	exome+100bp flanks	2	35956486	...	4	11	20	1.112456e-07	3.059253e-07	5.562279e-07	-6.254747e+00	...	1	32224023	...	3.103275e-08
TCGA-A2-A4RY-01A-31D-A25Q-09	31	15	16	13	5.161290e-01	all capture (no interval list)	3	65785381	...	2	12	27	3.040189e-08	1.824113e-07	4.104255e-07	-6.386766e+00	...	0	31868074	...	0
TCGA-A2-A4S0-01A-21D-A25Q-09	17	10	7	6	4.117647e-01	all capture (no interval list)	3	65785381	...	4	4	13	6.080378e-08	6.080378e-08	1.976123e-07	-6.704186e+00	...	2	31868074	...	6.275873e-08
TCGA-A2-A4S1-01A-21D-A25Q-09	80	67	13	63	1.625000e-01	exome+100bp flanks	2	35956486	...	4	51	62	1.112456e-07	1.418381e-06	1.724306e-06	-5.763386e+00	...	2	32224023	...	6.206550e-08
TCGA-A2-A4S2-01A-12D-A25Q-09	45	41	4	33	8.888889e-02	exome+100bp flanks	2	35956486	...	7	28	40	1.946798e-07	7.787190e-07	1.112456e-06	-5.953717e+00	...	3	32224023	...	9.309825e-08
TCGA-A2-A4S3-01A-21D-A25Q-09	89	79	10	60	1.123596e-01	exome+100bp flanks	2	35956486	...	19	53	78	5.284165e-07	1.474004e-06	2.169289e-06	-5.663683e+00	...	1	32224023	...	3.103275e-08
TCGA-A7-A0CD-01A-11W-A019-09	33	32	1	25	3.030303e-02	exome+100bp flanks	2	35956486	...	6	17	30	1.668684e-07	4.727937e-07	8.343418e-07	-6.078656e+00	...	6	32224023	...	1.861965e-07
TCGA-A7-A0CE-01A-11W-A019-09	114	112	2	96	1.754386e-02	coding only	1	28826511	...	16	76	113	5.550446e-07	2.636462e-06	3.920003e-06	-5.406714e+00	...	20	28770325	...	6.951607e-07
TCGA-A7-A0CG-01A-11W-A019-09	33	31	2	27	6.060606e-02	exome+100bp flanks	2	35956486	...	4	18	31	1.112456e-07	5.006051e-07	8.621532e-07	-6.064416e+00	...	8	32224023	...	2.482620e-07
TCGA-A7-A0CH-01A-21W-A019-09	30	28	2	25	6.666667e-02	exome+100bp flanks	2	35956486	...	3	20	28	8.343418e-08	5.562279e-07	7.787190e-07	-6.108619e+00	...	5	32224023	...	1.551637e-07
TCGA-A7-A0CJ-01A-21W-A019-09	51	49	2	40	3.921569e-02	exome+100bp flanks	2	35956486	...	9	34	48	2.503025e-07	9.455874e-07	1.334947e-06	-5.874536e+00	...	5	32224023	...	1.551637e-07
TCGA-A7-A0D9-01A-31W-A071-09	24	24	0	21	0	exome+100bp flanks	2	35956486	...	3	16	23	8.343418e-08	4.449823e-07	6.396621e-07	-6.194049e+00	...	4	32224023	...	1.241310e-07
TCGA-A7-A0DA-01A-31D-A10Y-09	131	128	3	111	2.290076e-02	coding only	1	28826511	...	17	97	121	5.897349e-07	3.364958e-06	4.197525e-06	-5.377007e+00	...	6	28770325	...	2.085482e-07
TCGA-A7-A0DB-01A-11D-A272-09	42	38	4	27	9.523810e-02	exome+100bp flanks	2	35956486	...	11	22	40	3.059253e-07	6.118507e-07	1.112456e-06	-5.953717e+00	...	3	32224023	...	9.309825e-08
TCGA-A7-A13D-01A-13D-A272-09	114	101	13	79	1.140351e-01	exome+100bp flanks	2	35956486	...	19	65	97	5.284165e-07	1.807741e-06	2.697705e-06	-5.569006e+00	...	5	32224023	...	1.551637e-07
TCGA-A7-A13E-01A-11D-A272-09	72	63	9	49	1.250000e-01	exome+100bp flanks	2	35956486	...	13	40	63	3.615481e-07	1.112456e-06	1.752118e-06	-5.756437e+00	...	6	32224023	...	1.861965e-07
TCGA-A7-A13F-01A-11D-A12Q-09	34	33	1	31	2.941176e-02	exome+100bp flanks	2	35956486	...	1	27	30	2.781139e-08	7.509076e-07	8.343418e-07	-6.078656e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A13G-01A-11D-A13L-09	26	25	1	17	3.846154e-02	exome+100bp flanks	2	35956486	...	6	14	23	1.668684e-07	3.893595e-07	6.396621e-07	-6.194049e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A13H-01A-11D-A228-09	26	23	3	22	1.153846e-01	exome+100bp flanks	2	35956486	...	1	15	22	2.781139e-08	4.171709e-07	6.118507e-07	-6.213355e+00	...	4	32224023	...	1.241310e-07
TCGA-A7-A26E-01A-11D-A167-09	40	39	1	29	2.500000e-02	exome+100bp flanks	2	35956486	...	9	24	37	2.503025e-07	6.674735e-07	1.029022e-06	-5.987576e+00	...	4	32224023	...	1.241310e-07
TCGA-A7-A26F-01A-21D-A167-09	34	33	1	26	2.941176e-02	exome+100bp flanks	2	35956486	...	7	23	33	1.946798e-07	6.396621e-07	9.177760e-07	-6.037263e+00	...	3	32224023	...	9.309825e-08
TCGA-A7-A26G-01A-21D-A167-09	54	52	2	38	3.703704e-02	exome+100bp flanks	2	35956486	...	14	34	50	3.893595e-07	9.455874e-07	1.390570e-06	-5.856807e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A26H-01A-11D-A167-09	100	98	2	75	2.000000e-02	coding only	1	28826511	...	22	71	95	7.631864e-07	2.463011e-06	3.295577e-06	-5.482068e+00	...	1	28770325	...	3.475804e-08
TCGA-A7-A26I-01A-11D-A167-09	34	33	1	29	2.941176e-02	exome+100bp flanks	2	35956486	...	4	24	29	1.112456e-07	6.674735e-07	8.065304e-07	-6.093379e+00	...	1	32224023	...	3.103275e-08
TCGA-A7-A26I-01B-06D-A22N-09	1	1	0	1	0	exome+100bp flanks	2	35956486	...	0	1	1	0	2.781139e-08	2.781139e-08	-7.555777e+00	...	0	32224023	...	0
TCGA-A7-A26J-01A-11D-A167-09	21	21	0	18	0	exome+100bp flanks	2	35956486	...	3	17	20	8.343418e-08	4.727937e-07	5.562279e-07	-6.254747e+00	...	0	32224023	...	0
TCGA-A7-A2KD-01A-31D-A21Q-09	49	39	10	31	2.040816e-01	exome+100bp flanks	2	35956486	...	7	29	43	1.946798e-07	8.065304e-07	1.195890e-06	-5.922309e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A3IY-01A-21D-A21Q-09	25	17	8	11	3.200000e-01	all capture (no interval list)	3	65785381	...	5	9	22	7.600473e-08	1.368085e-07	3.344208e-07	-6.475707e+00	...	2	31868074	...	6.275873e-08
TCGA-A7-A3IZ-01A-11D-A20S-09	126	104	22	70	1.746032e-01	exome+100bp flanks	2	35956486	...	26	62	101	7.230962e-07	1.724306e-06	2.808951e-06	-5.551456e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A3J0-01A-11D-A20S-09	88	52	36	34	4.090909e-01	all capture (no interval list)	3	65785381	...	17	19	59	2.584161e-07	2.888180e-07	8.968558e-07	-6.047277e+00	...	1	31868074	...	3.137937e-08
TCGA-A7-A3J1-01A-11D-A20S-09	33	27	6	20	1.818182e-01	exome+100bp flanks	2	35956486	...	4	17	24	1.112456e-07	4.727937e-07	6.674735e-07	-6.175566e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A3RF-01A-11D-A228-09	72	66	6	48	8.333333e-02	exome+100bp flanks	2	35956486	...	18	37	67	5.006051e-07	1.029022e-06	1.863363e-06	-5.729702e+00	...	8	32224023	...	2.482620e-07
TCGA-A7-A425-01A-11D-A243-09	48	39	9	34	1.875000e-01	exome+100bp flanks	2	35956486	...	3	28	37	8.343418e-08	7.787190e-07	1.029022e-06	-5.987576e+00	...	1	32224023	...	3.103275e-08
TCGA-A7-A426-01A-22D-A243-09	46	36	10	29	2.173913e-01	exome+100bp flanks	2	35956486	...	6	26	39	1.668684e-07	7.230962e-07	1.084644e-06	-5.964713e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A4SA-01A-11D-A25Q-09	93	80	13	59	1.397849e-01	exome+100bp flanks	2	35956486	...	19	53	80	5.284165e-07	1.474004e-06	2.224912e-06	-5.652687e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A4SB-01A-21D-A25Q-09	42	35	7	31	1.666667e-01	exome+100bp flanks	2	35956486	...	4	24	34	1.112456e-07	6.674735e-07	9.455874e-07	-6.024298e+00	...	3	32224023	...	9.309825e-08
TCGA-A7-A4SC-01A-12D-A25Q-09	46	41	5	33	1.086957e-01	exome+100bp flanks	2	35956486	...	7	24	41	1.946798e-07	6.674735e-07	1.140267e-06	-5.942993e+00	...	6	32224023	...	1.861965e-07
TCGA-A7-A4SD-01A-11D-A25Q-09	60	50	10	39	1.666667e-01	exome+100bp flanks	2	35956486	...	11	29	49	3.059253e-07	8.065304e-07	1.362758e-06	-5.865581e+00	...	4	32224023	...	1.241310e-07
TCGA-A7-A4SE-01A-11D-A25Q-09	114	96	18	79	1.578947e-01	exome+100bp flanks	2	35956486	...	15	66	96	4.171709e-07	1.835552e-06	2.669894e-06	-5.573506e+00	...	4	32224023	...	1.241310e-07
TCGA-A7-A4SF-01A-11D-A25Q-09	88	75	13	52	1.477273e-01	exome+100bp flanks	2	35956486	...	22	49	81	6.118507e-07	1.362758e-06	2.252723e-06	-5.647292e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A56D-01A-11D-A27P-09	151	134	17	95	1.125828e-01	exome+100bp flanks	2	35956486	...	32	79	128	8.899646e-07	2.197100e-06	3.559858e-06	-5.448567e+00	...	7	32224023	...	2.172292e-07
TCGA-A7-A5ZV-01A-11D-A28B-09	216	186	30	145	1.388889e-01	exome+100bp flanks	2	35956486	...	41	128	197	1.140267e-06	3.559858e-06	5.478845e-06	-5.261311e+00	...	5	32224023	...	1.551637e-07
TCGA-A7-A5ZW-01A-12D-A29N-09	30	27	3	23	1.000000e-01	exome+100bp flanks	2	35956486	...	4	15	21	1.112456e-07	4.171709e-07	5.840393e-07	-6.233558e+00	...	2	32224023	...	6.206550e-08
TCGA-A7-A5ZX-01A-12D-A29N-09	31	27	4	25	1.290323e-01	exome+100bp flanks	2	35956486	...	2	22	28	5.562279e-08	6.118507e-07	7.787190e-07	-6.108619e+00	...	2	32224023	...	6.206550e-08
TCGA-A8-A06N-01A-11W-A019-09	32	32	0	24	0	exome+100bp flanks	2	35956486	...	7	20	30	1.946798e-07	5.562279e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A06O-01A-11W-A019-09	63	60	3	53	4.761905e-02	exome+100bp flanks	2	35956486	...	7	38	58	1.946798e-07	1.056833e-06	1.613061e-06	-5.792349e+00	...	12	32224023	...	3.723930e-07
TCGA-A8-A06P-01A-11W-A019-09	42	42	0	38	0	exome+100bp flanks	2	35956486	...	4	16	42	1.112456e-07	4.449823e-07	1.168079e-06	-5.932528e+00	...	22	32224023	...	6.827205e-07
TCGA-A8-A06Q-01A-11W-A050-09	216	215	1	181	4.629630e-03	coding only	1	28826511	...	32	156	201	1.110089e-06	5.411685e-06	6.972748e-06	-5.156596e+00	...	13	28770325	...	4.518545e-07
TCGA-A8-A06R-01A-11D-A015-09	56	55	1	45	1.785714e-02	coding only	1	28826511	...	10	39	54	3.469029e-07	1.352921e-06	1.873276e-06	-5.727398e+00	...	5	28770325	...	1.737902e-07
TCGA-A8-A06T-01A-11W-A019-09	27	26	1	23	3.703704e-02	exome+100bp flanks	2	35956486	...	3	17	25	8.343418e-08	4.727937e-07	6.952849e-07	-6.157837e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A06U-01A-11W-A019-09	57	57	0	45	0	coding only	1	28826511	...	12	36	54	4.162835e-07	1.248850e-06	1.873276e-06	-5.727398e+00	...	6	28770325	...	2.085482e-07
TCGA-A8-A06X-01A-21W-A019-09	192	190	2	149	1.041667e-02	coding only	1	28826511	...	39	127	186	1.352921e-06	4.405667e-06	6.452394e-06	-5.190279e+00	...	19	28770325	...	6.604027e-07
TCGA-A8-A06Y-01A-21W-A019-09	34	32	2	27	5.882353e-02	exome+100bp flanks	2	35956486	...	5	21	30	1.390570e-07	5.840393e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-A8-A06Z-01A-11W-A019-09	60	57	3	46	5.000000e-02	exome+100bp flanks	2	35956486	...	11	41	58	3.059253e-07	1.140267e-06	1.613061e-06	-5.792349e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A075-01A-11D-A099-09	74	71	3	53	4.054054e-02	exome+100bp flanks	2	35956486	...	17	48	71	4.727937e-07	1.334947e-06	1.974609e-06	-5.704519e+00	...	4	32224023	...	1.241310e-07
TCGA-A8-A076-01A-21W-A019-09	55	52	3	45	5.454545e-02	exome+100bp flanks	2	35956486	...	6	40	49	1.668684e-07	1.112456e-06	1.362758e-06	-5.865581e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A079-01A-21W-A019-09	51	49	2	38	3.921569e-02	exome+100bp flanks	2	35956486	...	9	31	47	2.503025e-07	8.621532e-07	1.307136e-06	-5.883679e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A07B-01A-11W-A019-09	67	65	2	50	2.985075e-02	coding only	1	28826511	...	14	37	60	4.856640e-07	1.283541e-06	2.081417e-06	-5.681641e+00	...	9	28770325	...	3.128223e-07
TCGA-A8-A07C-01A-11D-A045-09	138	137	1	115	7.246377e-03	coding only	1	28826511	...	22	103	131	7.631864e-07	3.573100e-06	4.544428e-06	-5.342521e+00	...	5	28770325	...	1.737902e-07
TCGA-A8-A07E-01A-11W-A050-09	74	73	1	67	1.351351e-02	coding only	1	28826511	...	4	42	68	1.387612e-07	1.456992e-06	2.358940e-06	-5.627283e+00	...	22	28770325	...	7.646768e-07
TCGA-A8-A07F-01A-11W-A019-09	30	29	1	23	3.333333e-02	exome+100bp flanks	2	35956486	...	6	18	28	1.668684e-07	5.006051e-07	7.787190e-07	-6.108619e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A07G-01A-11W-A050-09	49	49	0	43	0	exome+100bp flanks	2	35956486	...	6	35	49	1.668684e-07	9.733988e-07	1.362758e-06	-5.865581e+00	...	8	32224023	...	2.482620e-07
TCGA-A8-A07I-01A-11W-A019-09	40	38	2	30	5.000000e-02	exome+100bp flanks	2	35956486	...	7	27	38	1.946798e-07	7.509076e-07	1.056833e-06	-5.975994e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A07J-01A-11W-A019-09	42	40	2	30	4.761905e-02	exome+100bp flanks	2	35956486	...	10	14	40	2.781139e-07	3.893595e-07	1.112456e-06	-5.953717e+00	...	16	32224023	...	4.965240e-07
TCGA-A8-A07L-01A-11W-A019-09	94	91	3	73	3.191489e-02	exome+100bp flanks	2	35956486	...	17	66	89	4.727937e-07	1.835552e-06	2.475214e-06	-5.606387e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A07O-01A-11W-A019-09	41	41	0	35	0	exome+100bp flanks	2	35956486	...	6	31	40	1.668684e-07	8.621532e-07	1.112456e-06	-5.953717e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A07P-01A-11W-A019-09	52	50	2	40	3.846154e-02	exome+100bp flanks	2	35956486	...	10	30	47	2.781139e-07	8.343418e-07	1.307136e-06	-5.883679e+00	...	7	32224023	...	2.172292e-07
TCGA-A8-A07R-01A-21W-A050-09	472	439	33	364	6.991525e-02	exome+100bp flanks	2	35956486	...	71	279	435	1.974609e-06	7.759379e-06	1.209796e-05	-4.917288e+00	...	65	32224023	...	2.017129e-06
TCGA-A8-A07U-01A-11W-A050-09	38	38	0	30	0	exome+100bp flanks	2	35956486	...	8	14	38	2.224912e-07	3.893595e-07	1.056833e-06	-5.975994e+00	...	16	32224023	...	4.965240e-07
TCGA-A8-A07W-01A-11W-A019-09	80	78	2	60	2.500000e-02	coding only	1	28826511	...	18	53	74	6.244252e-07	1.838585e-06	2.567081e-06	-5.590560e+00	...	3	28770325	...	1.042741e-07
TCGA-A8-A07Z-01A-11W-A019-09	23	23	0	18	0	exome+100bp flanks	2	35956486	...	5	14	23	1.390570e-07	3.893595e-07	6.396621e-07	-6.194049e+00	...	4	32224023	...	1.241310e-07
TCGA-A8-A081-01A-11W-A019-09	83	80	3	68	3.614458e-02	exome+100bp flanks	2	35956486	...	12	59	74	3.337367e-07	1.640872e-06	2.058043e-06	-5.686546e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A082-01A-11W-A019-09	22	22	0	17	0	exome+100bp flanks	2	35956486	...	5	11	22	1.390570e-07	3.059253e-07	6.118507e-07	-6.213355e+00	...	6	32224023	...	1.861965e-07
TCGA-A8-A083-01A-21W-A019-09	29	27	2	27	6.896552e-02	exome+100bp flanks	2	35956486	...	0	22	28	0	6.118507e-07	7.787190e-07	-6.108619e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A084-01A-21W-A019-09	66	65	1	56	1.515152e-02	coding only	1	28826511	...	9	47	63	3.122126e-07	1.630444e-06	2.185488e-06	-5.660452e+00	...	7	28770325	...	2.433063e-07
TCGA-A8-A085-01A-11W-A019-09	68	68	0	52	0	coding only	1	28826511	...	16	47	67	5.550446e-07	1.630444e-06	2.324249e-06	-5.633717e+00	...	4	28770325	...	1.390321e-07
TCGA-A8-A086-01A-11W-A019-09	23	23	0	19	0	exome+100bp flanks	2	35956486	...	4	12	23	1.112456e-07	3.337367e-07	6.396621e-07	-6.194049e+00	...	7	32224023	...	2.172292e-07
TCGA-A8-A08A-01A-11W-A019-09	31	31	0	26	0	exome+100bp flanks	2	35956486	...	5	16	30	1.390570e-07	4.449823e-07	8.343418e-07	-6.078656e+00	...	9	32224023	...	2.792947e-07
TCGA-A8-A08B-01A-11W-A019-09	33	31	2	18	6.060606e-02	exome+100bp flanks	2	35956486	...	12	15	30	3.337367e-07	4.171709e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A08C-01A-11W-A019-09	2	2	0	2	0	exome+100bp flanks	2	35956486	...	0	0	2	0	0	5.562279e-08	-7.254747e+00	...	2	32224023	...	6.206550e-08
TCGA-A8-A08F-01A-11W-A019-09	116	112	4	91	3.448276e-02	exome+100bp flanks	2	35956486	...	20	80	110	5.562279e-07	2.224912e-06	3.059253e-06	-5.514385e+00	...	9	32224023	...	2.792947e-07
TCGA-A8-A08G-01A-11W-A019-09	34	34	0	28	0	exome+100bp flanks	2	35956486	...	6	23	32	1.668684e-07	6.396621e-07	8.899646e-07	-6.050627e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A08H-01A-21W-A019-09	55	52	3	44	5.454545e-02	exome+100bp flanks	2	35956486	...	8	24	53	2.224912e-07	6.674735e-07	1.474004e-06	-5.831501e+00	...	20	32224023	...	6.206550e-07
TCGA-A8-A08I-01A-11W-A019-09	40	39	1	32	2.500000e-02	exome+100bp flanks	2	35956486	...	7	21	36	1.946798e-07	5.840393e-07	1.001210e-06	-5.999475e+00	...	8	32224023	...	2.482620e-07
TCGA-A8-A08J-01A-11W-A019-09	28	28	0	25	0	exome+100bp flanks	2	35956486	...	2	19	26	5.562279e-08	5.284165e-07	7.230962e-07	-6.140804e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A08L-01A-11W-A019-09	203	201	2	164	9.852217e-03	coding only	1	28826511	...	36	150	193	1.248850e-06	5.203543e-06	6.695226e-06	-5.174235e+00	...	7	28770325	...	2.433063e-07
TCGA-A8-A08O-01A-21W-A071-09	25	24	1	19	4.000000e-02	exome+100bp flanks	2	35956486	...	5	17	24	1.390570e-07	4.727937e-07	6.674735e-07	-6.175566e+00	...	2	32224023	...	6.206550e-08
TCGA-A8-A08P-01A-11W-A019-09	38	38	0	32	0	exome+100bp flanks	2	35956486	...	6	26	37	1.668684e-07	7.230962e-07	1.029022e-06	-5.987576e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A08R-01A-11W-A050-09	173	169	4	133	2.312139e-02	coding only	1	28826511	...	35	115	160	1.214160e-06	3.989383e-06	5.550446e-06	-5.255672e+00	...	8	28770325	...	2.780643e-07
TCGA-A8-A08S-01A-11W-A050-09	52	51	1	43	1.923077e-02	coding only	1	28826511	...	8	28	48	2.775223e-07	9.713281e-07	1.665134e-06	-5.778551e+00	...	12	28770325	...	4.170964e-07
TCGA-A8-A08T-01A-21W-A019-09	50	50	0	40	0	coding only	1	28826511	...	10	27	47	3.469029e-07	9.366378e-07	1.630444e-06	-5.787694e+00	...	10	28770325	...	3.475804e-07
TCGA-A8-A08X-01A-21W-A019-09	18	18	0	14	0	exome+100bp flanks	2	35956486	...	4	9	16	1.112456e-07	2.503025e-07	4.449823e-07	-6.351657e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A08Z-01A-21W-A019-09	30	30	0	23	0	exome+100bp flanks	2	35956486	...	7	20	30	1.946798e-07	5.562279e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A090-01A-11W-A019-09	35	35	0	28	0	exome+100bp flanks	2	35956486	...	7	22	33	1.946798e-07	6.118507e-07	9.177760e-07	-6.037263e+00	...	4	32224023	...	1.241310e-07
TCGA-A8-A091-01A-11W-A019-09	25	24	1	17	4.000000e-02	exome+100bp flanks	2	35956486	...	7	9	24	1.946798e-07	2.503025e-07	6.674735e-07	-6.175566e+00	...	8	32224023	...	2.482620e-07
TCGA-A8-A092-01A-11W-A019-09	85	80	5	68	5.882353e-02	exome+100bp flanks	2	35956486	...	12	59	81	3.337367e-07	1.640872e-06	2.252723e-06	-5.647292e+00	...	9	32224023	...	2.792947e-07
TCGA-A8-A093-01A-11W-A019-09	101	100	1	79	9.900990e-03	coding only	1	28826511	...	20	72	98	6.938058e-07	2.497701e-06	3.399648e-06	-5.468566e+00	...	6	28770325	...	2.085482e-07
TCGA-A8-A094-01A-11W-A019-09	177	176	1	142	5.649718e-03	coding only	1	28826511	...	32	126	168	1.110089e-06	4.370976e-06	5.827969e-06	-5.234483e+00	...	10	28770325	...	3.475804e-07
TCGA-A8-A095-01A-11W-A019-09	125	120	5	92	4.000000e-02	exome+100bp flanks	2	35956486	...	26	81	117	7.230962e-07	2.252723e-06	3.253933e-06	-5.487591e+00	...	7	32224023	...	2.172292e-07
TCGA-A8-A096-01A-11W-A019-09	28	27	1	25	3.571429e-02	exome+100bp flanks	2	35956486	...	2	19	25	5.562279e-08	5.284165e-07	6.952849e-07	-6.157837e+00	...	4	32224023	...	1.241310e-07
TCGA-A8-A097-01A-11W-A050-09	105	105	0	82	0	coding only	1	28826511	...	22	61	98	7.631864e-07	2.116108e-06	3.399648e-06	-5.468566e+00	...	15	28770325	...	5.213705e-07
TCGA-A8-A099-01A-11W-A019-09	22	21	1	16	4.545455e-02	exome+100bp flanks	2	35956486	...	4	14	18	1.112456e-07	3.893595e-07	5.006051e-07	-6.300505e+00	...	0	32224023	...	0
TCGA-A8-A09A-01A-11W-A019-09	106	102	4	83	3.773585e-02	exome+100bp flanks	2	35956486	...	18	79	102	5.006051e-07	2.197100e-06	2.836762e-06	-5.547177e+00	...	4	32224023	...	1.241310e-07
TCGA-A8-A09B-01A-11W-A019-09	40	38	2	30	5.000000e-02	exome+100bp flanks	2	35956486	...	8	22	36	2.224912e-07	6.118507e-07	1.001210e-06	-5.999475e+00	...	6	32224023	...	1.861965e-07
TCGA-A8-A09C-01A-11W-A019-09	30	30	0	20	0	exome+100bp flanks	2	35956486	...	10	14	30	2.781139e-07	3.893595e-07	8.343418e-07	-6.078656e+00	...	6	32224023	...	1.861965e-07
TCGA-A8-A09D-01A-11W-A019-09	47	46	1	32	2.127660e-02	exome+100bp flanks	2	35956486	...	12	21	43	3.337367e-07	5.840393e-07	1.195890e-06	-5.922309e+00	...	9	32224023	...	2.792947e-07
TCGA-A8-A09E-01A-11W-A019-09	45	45	0	41	0	exome+100bp flanks	2	35956486	...	4	26	44	1.112456e-07	7.230962e-07	1.223701e-06	-5.912325e+00	...	14	32224023	...	4.344585e-07
TCGA-A8-A09G-01A-21W-A019-09	243	238	5	191	2.057613e-02	coding only	1	28826511	...	44	177	231	1.526373e-06	6.140181e-06	8.013457e-06	-5.096180e+00	...	8	28770325	...	2.780643e-07
TCGA-A8-A09I-01A-22W-A050-09	128	126	2	96	1.562500e-02	coding only	1	28826511	...	28	87	120	9.713281e-07	3.018055e-06	4.162835e-06	-5.380611e+00	...	5	28770325	...	1.737902e-07
TCGA-A8-A09K-01A-11W-A019-09	35	35	0	29	0	exome+100bp flanks	2	35956486	...	6	24	35	1.668684e-07	6.674735e-07	9.733988e-07	-6.011709e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A09M-01A-11W-A019-09	92	89	3	68	3.260870e-02	exome+100bp flanks	2	35956486	...	21	58	86	5.840393e-07	1.613061e-06	2.391780e-06	-5.621279e+00	...	6	32224023	...	1.861965e-07
TCGA-A8-A09N-01A-11W-A019-09	77	75	2	53	2.597403e-02	coding only	1	28826511	...	19	47	71	6.591155e-07	1.630444e-06	2.463011e-06	-5.608534e+00	...	4	28770325	...	1.390321e-07
TCGA-A8-A09Q-01A-11W-A019-09	97	95	2	74	2.061856e-02	coding only	1	28826511	...	21	70	96	7.284961e-07	2.428320e-06	3.330268e-06	-5.477521e+00	...	3	28770325	...	1.042741e-07
TCGA-A8-A09R-01A-11W-A019-09	50	49	1	42	2.000000e-02	coding only	1	28826511	...	7	32	49	2.428320e-07	1.110089e-06	1.699824e-06	-5.769596e+00	...	10	28770325	...	3.475804e-07
TCGA-A8-A09T-01A-11W-A019-09	24	24	0	20	0	exome+100bp flanks	2	35956486	...	2	15	22	5.562279e-08	4.171709e-07	6.118507e-07	-6.213355e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A09V-01A-11D-A045-09	24	24	0	20	0	exome+100bp flanks	2	35956486	...	4	11	23	1.112456e-07	3.059253e-07	6.396621e-07	-6.194049e+00	...	8	32224023	...	2.482620e-07
TCGA-A8-A09W-01A-11W-A019-09	81	79	2	65	2.469136e-02	coding only	1	28826511	...	14	52	80	4.856640e-07	1.803895e-06	2.775223e-06	-5.556702e+00	...	13	28770325	...	4.518545e-07
TCGA-A8-A09X-01A-11W-A019-09	57	56	1	45	1.754386e-02	coding only	1	28826511	...	11	37	55	3.815932e-07	1.283541e-06	1.907966e-06	-5.719429e+00	...	7	28770325	...	2.433063e-07
TCGA-A8-A09Z-01A-11W-A019-09	1406	1284	122	1035	8.677098e-02	exome+100bp flanks	2	35956486	...	242	812	1318	6.730357e-06	2.258285e-05	3.665542e-05	-4.435862e+00	...	173	32224023	...	5.368665e-06
TCGA-A8-A0A1-01A-11W-A019-09	37	36	1	31	2.702703e-02	exome+100bp flanks	2	35956486	...	5	21	35	1.390570e-07	5.840393e-07	9.733988e-07	-6.011709e+00	...	9	32224023	...	2.792947e-07
TCGA-A8-A0A2-01A-11W-A050-09	34	34	0	23	0	exome+100bp flanks	2	35956486	...	11	16	32	3.059253e-07	4.449823e-07	8.899646e-07	-6.050627e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A0A4-01A-11W-A019-09	35	34	1	27	2.857143e-02	exome+100bp flanks	2	35956486	...	7	10	35	1.946798e-07	2.781139e-07	9.733988e-07	-6.011709e+00	...	17	32224023	...	5.275567e-07
TCGA-A8-A0A6-01A-12W-A071-09	3174	3046	128	2186	4.032766e-02	exome+100bp flanks	2	35956486	...	820	2080	3004	2.280534e-05	5.784770e-05	8.354543e-05	-4.078077e+00	...	5	32224023	...	1.551637e-07
TCGA-A8-A0A7-01A-11W-A019-09	90	89	1	71	1.111111e-02	coding only	1	28826511	...	17	64	85	5.897349e-07	2.220179e-06	2.948675e-06	-5.530373e+00	...	4	28770325	...	1.390321e-07
TCGA-A8-A0A9-01A-11W-A019-09	47	45	2	39	4.255319e-02	exome+100bp flanks	2	35956486	...	6	35	44	1.668684e-07	9.733988e-07	1.223701e-06	-5.912325e+00	...	3	32224023	...	9.309825e-08
TCGA-A8-A0AB-01A-11W-A050-09	25	24	1	19	4.000000e-02	exome+100bp flanks	2	35956486	...	5	13	24	1.390570e-07	3.615481e-07	6.674735e-07	-6.175566e+00	...	6	32224023	...	1.861965e-07
TCGA-A8-A0AD-01A-11W-A071-09	28	28	0	18	0	exome+100bp flanks	2	35956486	...	10	15	28	2.781139e-07	4.171709e-07	7.787190e-07	-6.108619e+00	...	3	32224023	...	9.309825e-08
TCGA-AC-A23C-01A-12D-A167-09	97	96	1	78	1.030928e-02	coding only	1	28826511	...	18	68	94	6.244252e-07	2.358940e-06	3.260887e-06	-5.486664e+00	...	7	28770325	...	2.433063e-07
TCGA-AC-A23E-01A-11D-A159-09	18	18	0	15	0	exome+100bp flanks	2	35956486	...	2	12	16	5.562279e-08	3.337367e-07	4.449823e-07	-6.351657e+00	...	2	32224023	...	6.206550e-08
TCGA-AC-A23G-01A-11D-A20S-09	30	29	1	19	3.333333e-02	exome+100bp flanks	2	35956486	...	10	18	29	2.781139e-07	5.006051e-07	8.065304e-07	-6.093379e+00	...	0	32224023	...	0
TCGA-AC-A23H-01A-11D-A159-09	4718	4659	59	3655	1.250530e-02	coding only	1	28826511	...	956	3431	4432	3.316392e-05	1.190224e-04	1.537474e-04	-3.813192e+00	...	19	28770325	...	6.604027e-07
TCGA-AC-A2B8-01A-11D-A17D-09	103	97	6	73	5.825243e-02	exome+100bp flanks	2	35956486	...	24	66	97	6.674735e-07	1.835552e-06	2.697705e-06	-5.569006e+00	...	4	32224023	...	1.241310e-07
TCGA-AC-A2BK-01A-11D-A21Q-09	97	80	17	63	1.752577e-01	exome+100bp flanks	2	35956486	...	16	51	80	4.449823e-07	1.418381e-06	2.224912e-06	-5.652687e+00	...	8	32224023	...	2.482620e-07
TCGA-AC-A2BM-01A-11D-A21Q-09	25	22	3	17	1.200000e-01	exome+100bp flanks	2	35956486	...	4	15	22	1.112456e-07	4.171709e-07	6.118507e-07	-6.213355e+00	...	0	32224023	...	0
TCGA-AC-A2FB-01A-11D-A17D-09	17	16	1	14	5.882353e-02	exome+100bp flanks	2	35956486	...	2	11	16	5.562279e-08	3.059253e-07	4.449823e-07	-6.351657e+00	...	2	32224023	...	6.206550e-08
TCGA-AC-A2FE-01A-11D-A19Y-09	35	22	13	19	3.714286e-01	all capture (no interval list)	3	65785381	...	3	13	25	4.560284e-08	1.976123e-07	3.800236e-07	-6.420189e+00	...	2	31868074	...	6.275873e-08
TCGA-AC-A2FF-01A-11D-A17D-09	13	12	1	12	7.692308e-02	exome+100bp flanks	2	35956486	...	0	10	13	0	2.781139e-07	3.615481e-07	-6.441834e+00	...	2	32224023	...	6.206550e-08
TCGA-AC-A2FG-01A-11D-A17D-09	53	49	4	39	7.547170e-02	exome+100bp flanks	2	35956486	...	9	32	48	2.503025e-07	8.899646e-07	1.334947e-06	-5.874536e+00	...	3	32224023	...	9.309825e-08
TCGA-AC-A2FK-01A-12D-A17W-09	1	1	0	1	0	exome+100bp flanks	2	35956486	...	0	1	1	0	2.781139e-08	2.781139e-08	-7.555777e+00	...	0	32224023	...	0
TCGA-AC-A2FM-01A-11D-A19Y-09	59	46	13	33	2.203390e-01	exome+100bp flanks	2	35956486	...	9	27	43	2.503025e-07	7.509076e-07	1.195890e-06	-5.922309e+00	...	2	32224023	...	6.206550e-08
TCGA-AC-A2FO-01A-11D-A17W-09	25	25	0	21	0	exome+100bp flanks	2	35956486	...	4	19	25	1.112456e-07	5.284165e-07	6.952849e-07	-6.157837e+00	...	2	32224023	...	6.206550e-08
TCGA-AC-A2QH-01A-11D-A18P-09	27	27	0	24	0	exome+100bp flanks	2	35956486	...	3	16	26	8.343418e-08	4.449823e-07	7.230962e-07	-6.140804e+00	...	7	32224023	...	2.172292e-07
TCGA-AC-A2QI-01A-12D-A19Y-09	92	79	13	59	1.413043e-01	exome+100bp flanks	2	35956486	...	20	54	87	5.562279e-07	1.501815e-06	2.419591e-06	-5.616258e+00	...	3	32224023	...	9.309825e-08
TCGA-AC-A2QJ-01A-12D-A19Y-09	97	52	45	49	4.639175e-01	all capture (no interval list)	3	65785381	...	2	33	52	3.040189e-08	5.016312e-07	7.904492e-07	-6.102126e+00	...	1	31868074	...	3.137937e-08
TCGA-AC-A3BB-01A-21D-A19Y-09	140	94	46	69	3.285714e-01	all capture (no interval list)	3	65785381	...	20	58	103	3.040189e-07	8.816548e-07	1.565697e-06	-5.805292e+00	...	0	31868074	...	0
TCGA-AC-A3EH-01A-22D-A228-09	66	51	15	39	2.272727e-01	exome+100bp flanks	2	35956486	...	10	35	53	2.781139e-07	9.733988e-07	1.474004e-06	-5.831501e+00	...	1	32224023	...	3.103275e-08
TCGA-AC-A3HN-01A-11D-A20S-09	20	17	3	13	1.500000e-01	exome+100bp flanks	2	35956486	...	4	11	17	1.112456e-07	3.059253e-07	4.727937e-07	-6.325328e+00	...	0	32224023	...	0
TCGA-AC-A3OD-01A-11D-A21Q-09	23	21	2	19	8.695652e-02	exome+100bp flanks	2	35956486	...	2	17	21	5.562279e-08	4.727937e-07	5.840393e-07	-6.233558e+00	...	1	32224023	...	3.103275e-08
TCGA-AC-A3QP-01A-11D-A22X-09	33	31	2	25	6.060606e-02	exome+100bp flanks	2	35956486	...	6	21	30	1.668684e-07	5.840393e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-AC-A3TM-01A-11D-A228-09	106	58	48	49	4.528302e-01	all capture (no interval list)	3	65785381	...	7	32	66	1.064066e-07	4.864303e-07	1.003262e-06	-5.998585e+00	...	4	31868074	...	1.255175e-07
TCGA-AC-A3TN-01A-11D-A228-09	222	121	101	92	4.549550e-01	all capture (no interval list)	3	65785381	...	20	61	132	3.040189e-07	9.272577e-07	2.006525e-06	-5.697555e+00	...	1	31868074	...	3.137937e-08
TCGA-AC-A3W5-01A-11D-A228-09	158	132	26	104	1.645570e-01	exome+100bp flanks	2	35956486	...	27	91	139	7.509076e-07	2.530837e-06	3.865784e-06	-5.412762e+00	...	3	32224023	...	9.309825e-08
TCGA-AC-A3W6-01A-12D-A228-09	271	203	68	160	2.509225e-01	exome+100bp flanks	2	35956486	...	40	146	222	1.112456e-06	4.060464e-06	6.174129e-06	-5.209424e+00	...	0	32224023	...	0
TCGA-AC-A3W7-01A-11D-A228-09	89	80	9	57	1.011236e-01	exome+100bp flanks	2	35956486	...	21	49	82	5.840393e-07	1.362758e-06	2.280534e-06	-5.641963e+00	...	6	32224023	...	1.861965e-07
TCGA-AC-A3YI-01A-21D-A23C-09	20	15	5	12	2.500000e-01	exome+100bp flanks	2	35956486	...	3	11	19	8.343418e-08	3.059253e-07	5.284165e-07	-6.277024e+00	...	1	32224023	...	3.103275e-08
TCGA-AC-A3YJ-01A-11D-A22X-09	35	31	4	24	1.142857e-01	exome+100bp flanks	2	35956486	...	6	20	30	1.668684e-07	5.562279e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-AC-A5EH-01A-11D-A28B-09	159	143	16	112	1.006289e-01	exome+100bp flanks	2	35956486	...	30	98	142	8.343418e-07	2.725517e-06	3.949218e-06	-5.403489e+00	...	3	32224023	...	9.309825e-08
TCGA-AC-A5EI-01A-11D-A27P-09	36	32	4	26	1.111111e-01	exome+100bp flanks	2	35956486	...	5	22	31	1.390570e-07	6.118507e-07	8.621532e-07	-6.064416e+00	...	2	32224023	...	6.206550e-08
TCGA-AC-A5XS-01A-11D-A29N-09	559	511	48	388	8.586762e-02	exome+100bp flanks	2	35956486	...	114	357	510	3.170499e-06	9.928668e-06	1.418381e-05	-4.848207e+00	...	6	32224023	...	1.861965e-07
TCGA-AC-A5XU-01A-11D-A28B-09	73	62	11	43	1.506849e-01	exome+100bp flanks	2	35956486	...	18	31	62	5.006051e-07	8.621532e-07	1.724306e-06	-5.763386e+00	...	7	32224023	...	2.172292e-07
TCGA-AC-A62X-01A-11D-A29N-09	68	58	10	47	1.470588e-01	exome+100bp flanks	2	35956486	...	11	39	57	3.059253e-07	1.084644e-06	1.585249e-06	-5.799902e+00	...	2	32224023	...	6.206550e-08
TCGA-AC-A62Y-01A-11D-A29N-09	72	65	7	54	9.722222e-02	exome+100bp flanks	2	35956486	...	10	45	64	2.781139e-07	1.251513e-06	1.779929e-06	-5.749597e+00	...	3	32224023	...	9.309825e-08
TCGA-AN-A03X-01A-21W-A019-09	43	41	2	35	4.651163e-02	exome+100bp flanks	2	35956486	...	6	17	41	1.668684e-07	4.727937e-07	1.140267e-06	-5.942993e+00	...	18	32224023	...	5.585895e-07
TCGA-AN-A03Y-01A-21W-A019-09	29	29	0	22	0	exome+100bp flanks	2	35956486	...	6	17	26	1.668684e-07	4.727937e-07	7.230962e-07	-6.140804e+00	...	3	32224023	...	9.309825e-08
TCGA-AN-A041-01A-11W-A050-09	24	23	1	19	4.166667e-02	exome+100bp flanks	2	35956486	...	4	14	23	1.112456e-07	3.893595e-07	6.396621e-07	-6.194049e+00	...	5	32224023	...	1.551637e-07
TCGA-AN-A046-01A-21W-A050-09	5705	5444	261	4541	4.574934e-02	exome+100bp flanks	2	35956486	...	860	4236	5287	2.391780e-05	1.178091e-04	1.470388e-04	-3.832568e+00	...	26	32224023	...	8.068515e-07
TCGA-AN-A049-01A-21W-A019-09	35	35	0	29	0	exome+100bp flanks	2	35956486	...	6	21	35	1.668684e-07	5.840393e-07	9.733988e-07	-6.011709e+00	...	8	32224023	...	2.482620e-07
TCGA-AN-A04A-01A-21W-A050-09	30	28	2	20	6.666667e-02	exome+100bp flanks	2	35956486	...	7	14	26	1.946798e-07	3.893595e-07	7.230962e-07	-6.140804e+00	...	5	32224023	...	1.551637e-07
TCGA-AN-A04C-01A-21W-A050-09	69	68	1	54	1.449275e-02	coding only	1	28826511	...	14	37	67	4.856640e-07	1.283541e-06	2.324249e-06	-5.633717e+00	...	16	28770325	...	5.561286e-07
TCGA-AN-A04D-01A-21W-A050-09	94	93	1	72	1.063830e-02	coding only	1	28826511	...	21	61	89	7.284961e-07	2.116108e-06	3.087436e-06	-5.510402e+00	...	7	28770325	...	2.433063e-07
TCGA-AN-A0AJ-01A-11W-A019-09	78	76	2	58	2.564103e-02	coding only	1	28826511	...	17	48	73	5.897349e-07	1.665134e-06	2.532391e-06	-5.596469e+00	...	8	28770325	...	2.780643e-07
TCGA-AN-A0AK-01A-21W-A019-09	1265	1158	107	913	8.458498e-02	exome+100bp flanks	2	35956486	...	229	622	1187	6.368809e-06	1.729869e-05	3.301212e-05	-4.481327e+00	...	251	32224023	...	7.789220e-06
TCGA-AN-A0AL-01A-11W-A019-09	79	76	3	66	3.797468e-02	exome+100bp flanks	2	35956486	...	9	52	72	2.503025e-07	1.446192e-06	2.002420e-06	-5.698445e+00	...	10	32224023	...	3.103275e-07
TCGA-AN-A0AM-01A-11W-A050-09	49	49	0	39	0	exome+100bp flanks	2	35956486	...	10	32	46	2.781139e-07	8.899646e-07	1.279324e-06	-5.893019e+00	...	4	32224023	...	1.241310e-07
TCGA-AN-A0AR-01A-11W-A019-09	116	110	6	91	5.172414e-02	exome+100bp flanks	2	35956486	...	19	80	108	5.284165e-07	2.224912e-06	3.003631e-06	-5.522353e+00	...	8	32224023	...	2.482620e-07
TCGA-AN-A0AS-01A-11W-A019-09	39	39	0	36	0	exome+100bp flanks	2	35956486	...	3	25	39	8.343418e-08	6.952849e-07	1.084644e-06	-5.964713e+00	...	11	32224023	...	3.413602e-07
TCGA-AN-A0AT-01A-11D-A045-09	109	109	0	91	0	coding only	1	28826511	...	17	82	103	5.897349e-07	2.844604e-06	3.573100e-06	-5.446955e+00	...	4	28770325	...	1.390321e-07
TCGA-AN-A0FD-01A-11W-A050-09	40	39	1	32	2.500000e-02	exome+100bp flanks	2	35956486	...	6	24	39	1.668684e-07	6.674735e-07	1.084644e-06	-5.964713e+00	...	8	32224023	...	2.482620e-07
TCGA-AN-A0FF-01A-11W-A050-09	27	24	3	21	1.111111e-01	exome+100bp flanks	2	35956486	...	3	14	23	8.343418e-08	3.893595e-07	6.396621e-07	-6.194049e+00	...	5	32224023	...	1.551637e-07
TCGA-AN-A0FJ-01A-11W-A019-09	85	84	1	71	1.176471e-02	coding only	1	28826511	...	13	65	83	4.509738e-07	2.254869e-06	2.879294e-06	-5.540714e+00	...	5	28770325	...	1.737902e-07
TCGA-AN-A0FK-01A-11W-A050-09	45	45	0	34	0	exome+100bp flanks	2	35956486	...	11	24	42	3.059253e-07	6.674735e-07	1.168079e-06	-5.932528e+00	...	7	32224023	...	2.172292e-07
TCGA-AN-A0FL-01A-11W-A050-09	178	175	3	142	1.685393e-02	coding only	1	28826511	...	32	122	167	1.110089e-06	4.232215e-06	5.793278e-06	-5.237076e+00	...	13	28770325	...	4.518545e-07
TCGA-AN-A0FN-01A-11W-A050-09	32	28	4	26	1.250000e-01	exome+100bp flanks	2	35956486	...	2	10	26	5.562279e-08	2.781139e-07	7.230962e-07	-6.140804e+00	...	13	32224023	...	4.034257e-07
TCGA-AN-A0FS-01A-11W-A050-09	64	64	0	51	0	coding only	1	28826511	...	12	30	62	4.162835e-07	1.040709e-06	2.150798e-06	-5.667400e+00	...	20	28770325	...	6.951607e-07
TCGA-AN-A0FT-01A-11W-A050-09	97	96	1	71	1.030928e-02	coding only	1	28826511	...	24	56	89	8.325669e-07	1.942656e-06	3.087436e-06	-5.510402e+00	...	8	28770325	...	2.780643e-07
TCGA-AN-A0FV-01A-11W-A019-09	83	81	2	59	2.409639e-02	coding only	1	28826511	...	21	51	77	7.284961e-07	1.769205e-06	2.671152e-06	-5.573301e+00	...	5	28770325	...	1.737902e-07
TCGA-AN-A0FW-01A-11W-A050-09	97	93	4	75	4.123711e-02	exome+100bp flanks	2	35956486	...	15	60	82	4.171709e-07	1.668684e-06	2.280534e-06	-5.641963e+00	...	6	32224023	...	1.861965e-07
TCGA-AN-A0FX-01A-11W-A050-09	148	144	4	130	2.702703e-02	coding only	1	28826511	...	13	66	136	4.509738e-07	2.289559e-06	4.717879e-06	-5.326253e+00	...	55	28770325	...	1.911692e-06
TCGA-AN-A0FY-01A-11W-A050-09	51	50	1	46	1.960784e-02	coding only	1	28826511	...	4	36	49	1.387612e-07	1.248850e-06	1.699824e-06	-5.769596e+00	...	8	28770325	...	2.780643e-07
TCGA-AN-A0FZ-01A-11W-A050-09	46	46	0	39	0	exome+100bp flanks	2	35956486	...	7	36	45	1.946798e-07	1.001210e-06	1.251513e-06	-5.902565e+00	...	2	32224023	...	6.206550e-08
TCGA-AN-A0G0-01A-11W-A050-09	39	37	2	34	5.128205e-02	exome+100bp flanks	2	35956486	...	3	26	33	8.343418e-08	7.230962e-07	9.177760e-07	-6.037263e+00	...	4	32224023	...	1.241310e-07
TCGA-AN-A0XL-01A-11D-A10M-09	30	27	3	21	1.000000e-01	exome+100bp flanks	2	35956486	...	6	17	27	1.668684e-07	4.727937e-07	7.509076e-07	-6.124413e+00	...	3	32224023	...	9.309825e-08
TCGA-AN-A0XN-01A-21D-A10G-09	120	120	0	96	0	coding only	1	28826511	...	22	85	112	7.631864e-07	2.948675e-06	3.885312e-06	-5.410574e+00	...	5	28770325	...	1.737902e-07
TCGA-AN-A0XO-01A-11D-A10G-09	27	25	2	20	7.407407e-02	exome+100bp flanks	2	35956486	...	5	18	24	1.390570e-07	5.006051e-07	6.674735e-07	-6.175566e+00	...	1	32224023	...	3.103275e-08
TCGA-AN-A0XP-01A-11D-A117-09	27	26	1	21	3.703704e-02	exome+100bp flanks	2	35956486	...	5	18	26	1.390570e-07	5.006051e-07	7.230962e-07	-6.140804e+00	...	3	32224023	...	9.309825e-08
TCGA-AN-A0XR-01A-11D-A10G-09	34	32	2	27	5.882353e-02	exome+100bp flanks	2	35956486	...	5	21	30	1.390570e-07	5.840393e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-AN-A0XS-01A-22D-A10G-09	27	27	0	24	0	exome+100bp flanks	2	35956486	...	2	18	25	5.562279e-08	5.006051e-07	6.952849e-07	-6.157837e+00	...	5	32224023	...	1.551637e-07
TCGA-AN-A0XT-01A-11D-A10G-09	18	16	2	8	1.111111e-01	exome+100bp flanks	2	35956486	...	7	8	16	1.946798e-07	2.224912e-07	4.449823e-07	-6.351657e+00	...	0	32224023	...	0
TCGA-AN-A0XU-01A-11D-A10G-09	98	97	1	81	1.020408e-02	coding only	1	28826511	...	16	68	89	5.550446e-07	2.358940e-06	3.087436e-06	-5.510402e+00	...	5	28770325	...	1.737902e-07
TCGA-AN-A0XV-01A-11D-A10G-09	29	28	1	24	3.448276e-02	exome+100bp flanks	2	35956486	...	4	21	29	1.112456e-07	5.840393e-07	8.065304e-07	-6.093379e+00	...	3	32224023	...	9.309825e-08
TCGA-AN-A0XW-01A-11D-A10G-09	224	218	6	170	2.678571e-02	coding only	1	28826511	...	44	157	205	1.526373e-06	5.446375e-06	7.111509e-06	-5.148038e+00	...	3	28770325	...	1.042741e-07
TCGA-AO-A03L-01A-41W-A071-09	25	24	1	22	4.000000e-02	exome+100bp flanks	2	35956486	...	2	17	24	5.562279e-08	4.727937e-07	6.674735e-07	-6.175566e+00	...	5	32224023	...	1.551637e-07
TCGA-AO-A03M-01B-11D-A10M-09	779	743	36	573	4.621309e-02	exome+100bp flanks	2	35956486	...	162	533	720	4.505446e-06	1.482347e-05	2.002420e-05	-4.698445e+00	...	0	32224023	...	0
TCGA-AO-A03N-01B-11D-A10M-09	101	100	1	74	9.900990e-03	coding only	1	28826511	...	26	70	96	9.019475e-07	2.428320e-06	3.330268e-06	-5.477521e+00	...	0	28770325	...	0
TCGA-AO-A03O-01A-11W-A019-09	62	61	1	54	1.612903e-02	coding only	1	28826511	...	7	45	58	2.428320e-07	1.561063e-06	2.012037e-06	-5.696364e+00	...	6	28770325	...	2.085482e-07
TCGA-AO-A03P-01A-11W-A019-09	49	47	2	37	4.081633e-02	exome+100bp flanks	2	35956486	...	10	26	45	2.781139e-07	7.230962e-07	1.251513e-06	-5.902565e+00	...	8	32224023	...	2.482620e-07
TCGA-AO-A03R-01A-21W-A050-09	44	44	0	32	0	exome+100bp flanks	2	35956486	...	12	22	42	3.337367e-07	6.118507e-07	1.168079e-06	-5.932528e+00	...	8	32224023	...	2.482620e-07
TCGA-AO-A03T-01A-21W-A050-09	92	91	1	76	1.086957e-02	coding only	1	28826511	...	15	56	88	5.203543e-07	1.942656e-06	3.052745e-06	-5.515309e+00	...	17	28770325	...	5.908866e-07
TCGA-AO-A03U-01B-21D-A10M-09	8	8	0	6	0	exome+100bp flanks	2	35956486	...	1	2	6	2.781139e-08	5.562279e-08	1.668684e-07	-6.777626e+00	...	3	32224023	...	9.309825e-08
TCGA-AO-A03V-01A-11D-A10Y-09	52	51	1	44	1.923077e-02	coding only	1	28826511	...	7	42	50	2.428320e-07	1.456992e-06	1.734514e-06	-5.760822e+00	...	1	28770325	...	3.475804e-08
TCGA-AO-A0J2-01A-11W-A050-09	69	66	3	47	4.347826e-02	exome+100bp flanks	2	35956486	...	19	41	63	5.284165e-07	1.140267e-06	1.752118e-06	-5.756437e+00	...	3	32224023	...	9.309825e-08
TCGA-AO-A0J3-01A-11W-A050-09	79	78	1	64	1.265823e-02	coding only	1	28826511	...	13	49	75	4.509738e-07	1.699824e-06	2.601772e-06	-5.584731e+00	...	12	28770325	...	4.170964e-07
TCGA-AO-A0J4-01A-11W-A050-09	85	84	1	67	1.176471e-02	coding only	1	28826511	...	17	57	80	5.897349e-07	1.977346e-06	2.775223e-06	-5.556702e+00	...	6	28770325	...	2.085482e-07
TCGA-AO-A0J5-01A-11W-A050-09	56	55	1	43	1.785714e-02	coding only	1	28826511	...	12	31	54	4.162835e-07	1.075399e-06	1.873276e-06	-5.727398e+00	...	11	28770325	...	3.823384e-07
TCGA-AO-A0J6-01A-11W-A050-09	103	103	0	89	0	coding only	1	28826511	...	12	73	93	4.162835e-07	2.532391e-06	3.226197e-06	-5.491309e+00	...	8	28770325	...	2.780643e-07
TCGA-AO-A0J7-01A-11W-A050-09	22	22	0	20	0	exome+100bp flanks	2	35956486	...	2	14	20	5.562279e-08	3.893595e-07	5.562279e-07	-6.254747e+00	...	4	32224023	...	1.241310e-07
TCGA-AO-A0J8-01A-21D-A045-09	26	23	3	16	1.153846e-01	exome+100bp flanks	2	35956486	...	7	14	25	1.946798e-07	3.893595e-07	6.952849e-07	-6.157837e+00	...	2	32224023	...	6.206550e-08
TCGA-AO-A0J9-01A-11W-A050-09	97	95	2	77	2.061856e-02	coding only	1	28826511	...	14	61	88	4.856640e-07	2.116108e-06	3.052745e-06	-5.515309e+00	...	12	28770325	...	4.170964e-07
TCGA-AO-A0JA-01A-11W-A071-09	30	30	0	23	0	exome+100bp flanks	2	35956486	...	6	15	27	1.668684e-07	4.171709e-07	7.509076e-07	-6.124413e+00	...	6	32224023	...	1.861965e-07
TCGA-AO-A0JB-01A-11W-A071-09	86	85	1	72	1.162791e-02	coding only	1	28826511	...	11	49	78	3.815932e-07	1.699824e-06	2.705843e-06	-5.567697e+00	...	18	28770325	...	6.256447e-07
TCGA-AO-A0JC-01A-11W-A071-09	9	9	0	6	0	exome+100bp flanks	2	35956486	...	2	3	6	5.562279e-08	8.343418e-08	1.668684e-07	-6.777626e+00	...	1	32224023	...	3.103275e-08
TCGA-AO-A0JD-01A-11W-A071-09	105	100	5	85	4.761905e-02	exome+100bp flanks	2	35956486	...	15	73	98	4.171709e-07	2.030232e-06	2.725517e-06	-5.564551e+00	...	8	32224023	...	2.482620e-07
TCGA-AO-A0JE-01A-11W-A071-09	40	40	0	32	0	exome+100bp flanks	2	35956486	...	8	30	39	2.224912e-07	8.343418e-07	1.084644e-06	-5.964713e+00	...	1	32224023	...	3.103275e-08
TCGA-AO-A0JF-01A-11W-A071-09	29	27	2	21	6.896552e-02	exome+100bp flanks	2	35956486	...	6	12	24	1.668684e-07	3.337367e-07	6.674735e-07	-6.175566e+00	...	6	32224023	...	1.861965e-07
TCGA-AO-A0JI-01A-21W-A100-09	15	15	0	13	0	exome+100bp flanks	2	35956486	...	2	9	13	5.562279e-08	2.503025e-07	3.615481e-07	-6.441834e+00	...	2	32224023	...	6.206550e-08
TCGA-AO-A0JJ-01A-11W-A071-09	12	12	0	10	0	exome+100bp flanks	2	35956486	...	2	9	12	5.562279e-08	2.503025e-07	3.337367e-07	-6.476596e+00	...	1	32224023	...	3.103275e-08
TCGA-AO-A0JL-01A-11W-A071-09	63	63	0	49	0	coding only	1	28826511	...	13	41	61	4.509738e-07	1.422302e-06	2.116108e-06	-5.674462e+00	...	7	28770325	...	2.433063e-07
TCGA-AO-A0JM-01A-21W-A071-09	35	33	2	25	5.714286e-02	exome+100bp flanks	2	35956486	...	8	21	32	2.224912e-07	5.840393e-07	8.899646e-07	-6.050627e+00	...	3	32224023	...	9.309825e-08
TCGA-AO-A124-01A-11D-A10M-09	140	137	3	115	2.142857e-02	coding only	1	28826511	...	22	101	130	7.631864e-07	3.503719e-06	4.509738e-06	-5.345849e+00	...	5	28770325	...	1.737902e-07
TCGA-AO-A125-01A-11D-A10M-09	42	40	2	32	4.761905e-02	exome+100bp flanks	2	35956486	...	8	21	36	2.224912e-07	5.840393e-07	1.001210e-06	-5.999475e+00	...	6	32224023	...	1.861965e-07
TCGA-AO-A126-01A-11D-A10M-09	21	21	0	16	0	exome+100bp flanks	2	35956486	...	5	16	21	1.390570e-07	4.449823e-07	5.840393e-07	-6.233558e+00	...	0	32224023	...	0
TCGA-AO-A128-01A-11D-A10M-09	983	941	42	720	4.272635e-02	exome+100bp flanks	2	35956486	...	208	610	920	5.784770e-06	1.696495e-05	2.558648e-05	-4.591989e+00	...	69	32224023	...	2.141260e-06
TCGA-AO-A129-01A-21D-A10M-09	87	87	0	69	0	coding only	1	28826511	...	18	62	83	6.244252e-07	2.150798e-06	2.879294e-06	-5.540714e+00	...	3	28770325	...	1.042741e-07
TCGA-AO-A12A-01A-21D-A10Y-09	15	15	0	11	0	exome+100bp flanks	2	35956486	...	4	6	12	1.112456e-07	1.668684e-07	3.337367e-07	-6.476596e+00	...	2	32224023	...	6.206550e-08
TCGA-AO-A12B-01A-11D-A10M-09	17	16	1	14	5.882353e-02	exome+100bp flanks	2	35956486	...	1	11	14	2.781139e-08	3.059253e-07	3.893595e-07	-6.409649e+00	...	2	32224023	...	6.206550e-08
TCGA-AO-A12D-01A-11D-A10Y-09	36	36	0	31	0	exome+100bp flanks	2	35956486	...	4	24	29	1.112456e-07	6.674735e-07	8.065304e-07	-6.093379e+00	...	1	32224023	...	3.103275e-08
TCGA-AO-A12E-01A-11D-A10M-09	622	548	74	369	1.189711e-01	exome+100bp flanks	2	35956486	...	140	275	438	3.893595e-06	7.648133e-06	1.218139e-05	-4.914303e+00	...	13	32224023	...	4.034257e-07
TCGA-AO-A12F-01A-11D-A10Y-09	32	30	2	28	6.250000e-02	exome+100bp flanks	2	35956486	...	2	23	29	5.562279e-08	6.396621e-07	8.065304e-07	-6.093379e+00	...	4	32224023	...	1.241310e-07
TCGA-AO-A12G-01A-11D-A10M-09	36	34	2	29	5.555556e-02	exome+100bp flanks	2	35956486	...	4	24	32	1.112456e-07	6.674735e-07	8.899646e-07	-6.050627e+00	...	3	32224023	...	9.309825e-08
TCGA-AO-A12H-01A-11D-A10Y-09	21	20	1	16	4.761905e-02	exome+100bp flanks	2	35956486	...	4	12	17	1.112456e-07	3.337367e-07	4.727937e-07	-6.325328e+00	...	1	32224023	...	3.103275e-08
TCGA-AO-A1KO-01A-31D-A188-09	32	31	1	24	3.125000e-02	exome+100bp flanks	2	35956486	...	7	9	31	1.946798e-07	2.503025e-07	8.621532e-07	-6.064416e+00	...	15	32224023	...	4.654912e-07
TCGA-AO-A1KP-01A-11D-A13L-09	21	20	1	14	4.761905e-02	exome+100bp flanks	2	35956486	...	6	14	20	1.668684e-07	3.893595e-07	5.562279e-07	-6.254747e+00	...	0	32224023	...	0
TCGA-AO-A1KR-01A-12D-A142-09	68	67	1	48	1.470588e-02	coding only	1	28826511	...	18	44	64	6.244252e-07	1.526373e-06	2.220179e-06	-5.653612e+00	...	2	28770325	...	6.951607e-08
TCGA-AO-A1KS-01A-11D-A13L-09	42	41	1	30	2.380952e-02	exome+100bp flanks	2	35956486	...	11	26	41	3.059253e-07	7.230962e-07	1.140267e-06	-5.942993e+00	...	4	32224023	...	1.241310e-07
TCGA-AO-A1KT-01A-11D-A13L-09	39	38	1	24	2.564103e-02	exome+100bp flanks	2	35956486	...	13	22	37	3.615481e-07	6.118507e-07	1.029022e-06	-5.987576e+00	...	1	32224023	...	3.103275e-08
TCGA-AQ-A04H-01B-11D-A10M-09	69	69	0	56	0	coding only	1	28826511	...	11	51	66	3.815932e-07	1.769205e-06	2.289559e-06	-5.640248e+00	...	4	28770325	...	1.390321e-07
TCGA-AQ-A04J-01A-02W-A050-09	58	57	1	45	1.724138e-02	coding only	1	28826511	...	12	28	56	4.162835e-07	9.713281e-07	1.942656e-06	-5.711604e+00	...	15	28770325	...	5.213705e-07
TCGA-AQ-A04L-01B-21D-A10M-09	51	47	4	37	7.843137e-02	exome+100bp flanks	2	35956486	...	9	28	44	2.503025e-07	7.787190e-07	1.223701e-06	-5.912325e+00	...	6	32224023	...	1.861965e-07
TCGA-AQ-A0Y5-01A-11D-A14K-09	48	47	1	37	2.083333e-02	exome+100bp flanks	2	35956486	...	10	36	46	2.781139e-07	1.001210e-06	1.279324e-06	-5.893019e+00	...	0	32224023	...	0
TCGA-AQ-A1H2-01A-11D-A13L-09	27	27	0	23	0	exome+100bp flanks	2	35956486	...	4	19	27	1.112456e-07	5.284165e-07	7.509076e-07	-6.124413e+00	...	4	32224023	...	1.241310e-07
TCGA-AQ-A1H3-01A-31D-A13L-09	28	28	0	20	0	exome+100bp flanks	2	35956486	...	8	16	27	2.224912e-07	4.449823e-07	7.509076e-07	-6.124413e+00	...	3	32224023	...	9.309825e-08
TCGA-AQ-A54N-01A-11D-A25Q-09	82	75	7	63	8.536585e-02	exome+100bp flanks	2	35956486	...	11	52	69	3.059253e-07	1.446192e-06	1.918986e-06	-5.716928e+00	...	4	32224023	...	1.241310e-07
TCGA-AQ-A54O-01A-11D-A25Q-09	31	28	3	22	9.677419e-02	exome+100bp flanks	2	35956486	...	6	18	31	1.668684e-07	5.006051e-07	8.621532e-07	-6.064416e+00	...	4	32224023	...	1.241310e-07
TCGA-AR-A0TS-01A-11D-A10Y-09	40	39	1	33	2.500000e-02	exome+100bp flanks	2	35956486	...	6	30	38	1.668684e-07	8.343418e-07	1.056833e-06	-5.975994e+00	...	2	32224023	...	6.206550e-08
TCGA-AR-A0TU-01A-31D-A10G-09	78	78	0	61	0	coding only	1	28826511	...	16	49	76	5.550446e-07	1.699824e-06	2.636462e-06	-5.578978e+00	...	11	28770325	...	3.823384e-07
TCGA-AR-A0TX-01A-11D-A099-09	287	281	6	222	2.090592e-02	coding only	1	28826511	...	56	205	268	1.942656e-06	7.111509e-06	9.296997e-06	-5.031657e+00	...	4	28770325	...	1.390321e-07
TCGA-AR-A0TY-01A-12W-A12T-09	92	89	3	79	3.260870e-02	exome+100bp flanks	2	35956486	...	10	36	86	2.781139e-07	1.001210e-06	2.391780e-06	-5.621279e+00	...	38	32224023	...	1.179244e-06
TCGA-AR-A0U0-01A-11D-A10G-09	49	48	1	42	2.040816e-02	exome+100bp flanks	2	35956486	...	6	21	46	1.668684e-07	5.840393e-07	1.279324e-06	-5.893019e+00	...	18	32224023	...	5.585895e-07
TCGA-AR-A0U1-01A-11D-A10Y-09	68	65	3	54	4.411765e-02	exome+100bp flanks	2	35956486	...	10	49	63	2.781139e-07	1.362758e-06	1.752118e-06	-5.756437e+00	...	2	32224023	...	6.206550e-08
TCGA-AR-A0U2-01A-11D-A10G-09	57	56	1	47	1.754386e-02	coding only	1	28826511	...	8	33	52	2.775223e-07	1.144780e-06	1.803895e-06	-5.743789e+00	...	11	28770325	...	3.823384e-07
TCGA-AR-A0U3-01A-11D-A10G-09	35	34	1	27	2.857143e-02	exome+100bp flanks	2	35956486	...	7	20	30	1.946798e-07	5.562279e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A1AH-01A-11D-A12B-09	94	92	2	66	2.127660e-02	coding only	1	28826511	...	24	58	88	8.325669e-07	2.012037e-06	3.052745e-06	-5.515309e+00	...	5	28770325	...	1.737902e-07
TCGA-AR-A1AI-01A-11D-A12Q-09	61	61	0	51	0	coding only	1	28826511	...	10	38	57	3.469029e-07	1.318231e-06	1.977346e-06	-5.703917e+00	...	9	28770325	...	3.128223e-07
TCGA-AR-A1AJ-01A-21D-A12Q-09	25	24	1	21	4.000000e-02	exome+100bp flanks	2	35956486	...	2	16	21	5.562279e-08	4.449823e-07	5.840393e-07	-6.233558e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A1AK-01A-21D-A12Q-09	64	60	4	49	6.250000e-02	exome+100bp flanks	2	35956486	...	10	45	59	2.781139e-07	1.251513e-06	1.640872e-06	-5.784925e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A1AL-01A-21D-A12Q-09	25	24	1	19	4.000000e-02	exome+100bp flanks	2	35956486	...	5	16	24	1.390570e-07	4.449823e-07	6.674735e-07	-6.175566e+00	...	2	32224023	...	6.206550e-08
TCGA-AR-A1AM-01A-41D-A228-09	29	26	3	21	1.034483e-01	exome+100bp flanks	2	35956486	...	4	18	26	1.112456e-07	5.006051e-07	7.230962e-07	-6.140804e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A1AN-01A-11D-A12Q-09	18	18	0	14	0	exome+100bp flanks	2	35956486	...	4	13	18	1.112456e-07	3.615481e-07	5.006051e-07	-6.300505e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A1AO-01A-11D-A12Q-09	8	8	0	5	0	exome+100bp flanks	2	35956486	...	3	5	8	8.343418e-08	1.390570e-07	2.224912e-07	-6.652687e+00	...	0	32224023	...	0
TCGA-AR-A1AP-01A-11D-A12Q-09	34	33	1	31	2.941176e-02	exome+100bp flanks	2	35956486	...	1	27	29	2.781139e-08	7.509076e-07	8.065304e-07	-6.093379e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A1AQ-01A-11D-A12Q-09	43	43	0	36	0	exome+100bp flanks	2	35956486	...	6	25	37	1.668684e-07	6.952849e-07	1.029022e-06	-5.987576e+00	...	6	32224023	...	1.861965e-07
TCGA-AR-A1AR-01A-31D-A135-09	53	51	2	41	3.773585e-02	exome+100bp flanks	2	35956486	...	10	36	49	2.781139e-07	1.001210e-06	1.362758e-06	-5.865581e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A1AS-01A-11D-A12Q-09	40	39	1	29	2.500000e-02	exome+100bp flanks	2	35956486	...	9	25	38	2.503025e-07	6.952849e-07	1.056833e-06	-5.975994e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A1AT-01A-11D-A12Q-09	30	29	1	22	3.333333e-02	exome+100bp flanks	2	35956486	...	7	15	27	1.946798e-07	4.171709e-07	7.509076e-07	-6.124413e+00	...	5	32224023	...	1.551637e-07
TCGA-AR-A1AU-01A-11D-A12Q-09	20	18	2	14	1.000000e-01	exome+100bp flanks	2	35956486	...	4	12	18	1.112456e-07	3.337367e-07	5.006051e-07	-6.300505e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A1AV-01A-21D-A12Q-09	40	39	1	34	2.500000e-02	exome+100bp flanks	2	35956486	...	5	28	37	1.390570e-07	7.787190e-07	1.029022e-06	-5.987576e+00	...	4	32224023	...	1.241310e-07
TCGA-AR-A1AW-01A-21D-A12Q-09	20	19	1	16	5.000000e-02	exome+100bp flanks	2	35956486	...	3	15	19	8.343418e-08	4.171709e-07	5.284165e-07	-6.277024e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A1AX-01A-11D-A12Q-09	14	13	1	11	7.142857e-02	exome+100bp flanks	2	35956486	...	2	10	13	5.562279e-08	2.781139e-07	3.615481e-07	-6.441834e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A1AY-01A-21D-A12Q-09	49	48	1	38	2.040816e-02	exome+100bp flanks	2	35956486	...	10	33	46	2.781139e-07	9.177760e-07	1.279324e-06	-5.893019e+00	...	2	32224023	...	6.206550e-08
TCGA-AR-A24H-01A-11D-A167-09	127	125	2	104	1.574803e-02	coding only	1	28826511	...	20	92	119	6.938058e-07	3.191507e-06	4.128144e-06	-5.384245e+00	...	6	28770325	...	2.085482e-07
TCGA-AR-A24K-01A-11D-A167-09	27	26	1	20	3.703704e-02	exome+100bp flanks	2	35956486	...	5	17	24	1.390570e-07	4.727937e-07	6.674735e-07	-6.175566e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A24L-01A-11D-A167-09	43	43	0	33	0	exome+100bp flanks	2	35956486	...	10	28	41	2.781139e-07	7.787190e-07	1.140267e-06	-5.942993e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A24M-01A-11D-A167-09	22	20	2	15	9.090909e-02	exome+100bp flanks	2	35956486	...	4	14	19	1.112456e-07	3.893595e-07	5.284165e-07	-6.277024e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A24N-01A-11D-A167-09	33	31	2	25	6.060606e-02	exome+100bp flanks	2	35956486	...	6	21	31	1.668684e-07	5.840393e-07	8.621532e-07	-6.064416e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A24O-01A-11D-A167-09	18	18	0	16	0	exome+100bp flanks	2	35956486	...	2	14	16	5.562279e-08	3.893595e-07	4.449823e-07	-6.351657e+00	...	0	32224023	...	0
TCGA-AR-A24P-01A-11D-A167-09	18	18	0	17	0	exome+100bp flanks	2	35956486	...	1	13	17	2.781139e-08	3.615481e-07	4.727937e-07	-6.325328e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A24Q-01A-12D-A167-09	144	142	2	106	1.388889e-02	coding only	1	28826511	...	33	96	136	1.144780e-06	3.330268e-06	4.717879e-06	-5.326253e+00	...	6	28770325	...	2.085482e-07
TCGA-AR-A24R-01A-11D-A167-09	24	24	0	20	0	exome+100bp flanks	2	35956486	...	4	15	24	1.112456e-07	4.171709e-07	6.674735e-07	-6.175566e+00	...	5	32224023	...	1.551637e-07
TCGA-AR-A24S-01A-11D-A167-09	42	40	2	31	4.761905e-02	exome+100bp flanks	2	35956486	...	8	29	38	2.224912e-07	8.065304e-07	1.056833e-06	-5.975994e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A24T-01A-11D-A167-09	21	21	0	18	0	exome+100bp flanks	2	35956486	...	2	12	16	5.562279e-08	3.337367e-07	4.449823e-07	-6.351657e+00	...	2	32224023	...	6.206550e-08
TCGA-AR-A24U-01A-11D-A167-09	20	19	1	14	5.000000e-02	exome+100bp flanks	2	35956486	...	5	13	19	1.390570e-07	3.615481e-07	5.284165e-07	-6.277024e+00	...	0	32224023	...	0
TCGA-AR-A24V-01A-21D-A167-09	26	26	0	19	0	exome+100bp flanks	2	35956486	...	5	17	22	1.390570e-07	4.727937e-07	6.118507e-07	-6.213355e+00	...	0	32224023	...	0
TCGA-AR-A24W-01A-11D-A17G-09	7	6	1	6	1.428571e-01	exome+100bp flanks	2	35956486	...	0	5	5	0	1.390570e-07	1.390570e-07	-6.856807e+00	...	0	32224023	...	0
TCGA-AR-A24X-01A-11D-A167-09	29	28	1	19	3.448276e-02	exome+100bp flanks	2	35956486	...	8	16	26	2.224912e-07	4.449823e-07	7.230962e-07	-6.140804e+00	...	2	32224023	...	6.206550e-08
TCGA-AR-A24Z-01A-11D-A167-09	39	39	0	32	0	exome+100bp flanks	2	35956486	...	6	30	38	1.668684e-07	8.343418e-07	1.056833e-06	-5.975994e+00	...	2	32224023	...	6.206550e-08
TCGA-AR-A250-01A-31D-A167-09	67	66	1	51	1.492537e-02	coding only	1	28826511	...	13	44	61	4.509738e-07	1.526373e-06	2.116108e-06	-5.674462e+00	...	3	28770325	...	1.042741e-07
TCGA-AR-A251-01A-12D-A167-09	153	153	0	125	0	coding only	1	28826511	...	28	112	147	9.713281e-07	3.885312e-06	5.099472e-06	-5.292475e+00	...	7	28770325	...	2.433063e-07
TCGA-AR-A252-01A-11D-A167-09	9	8	1	7	1.111111e-01	exome+100bp flanks	2	35956486	...	1	6	8	2.781139e-08	1.668684e-07	2.224912e-07	-6.652687e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A254-01A-21D-A167-09	32	32	0	28	0	exome+100bp flanks	2	35956486	...	4	25	32	1.112456e-07	6.952849e-07	8.899646e-07	-6.050627e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A255-01A-11D-A167-09	57	54	3	46	5.263158e-02	exome+100bp flanks	2	35956486	...	8	39	51	2.224912e-07	1.084644e-06	1.418381e-06	-5.848207e+00	...	3	32224023	...	9.309825e-08
TCGA-AR-A256-01A-11D-A167-09	186	184	2	146	1.075269e-02	coding only	1	28826511	...	37	131	177	1.283541e-06	4.544428e-06	6.140181e-06	-5.211819e+00	...	9	28770325	...	3.128223e-07
TCGA-AR-A2LE-01A-11D-A17W-09	315	306	9	234	2.857143e-02	coding only	1	28826511	...	67	226	300	2.324249e-06	7.840005e-06	1.040709e-05	-4.982671e+00	...	3	28770325	...	1.042741e-07
TCGA-AR-A2LH-01A-31D-A18P-09	21	21	0	18	0	exome+100bp flanks	2	35956486	...	3	16	19	8.343418e-08	4.449823e-07	5.284165e-07	-6.277024e+00	...	0	32224023	...	0
TCGA-AR-A2LJ-01A-12D-A19Y-09	15	13	2	11	1.333333e-01	exome+100bp flanks	2	35956486	...	2	11	14	5.562279e-08	3.059253e-07	3.893595e-07	-6.409649e+00	...	0	32224023	...	0
TCGA-AR-A2LK-01A-11D-A17W-09	37	37	0	28	0	exome+100bp flanks	2	35956486	...	9	25	36	2.503025e-07	6.952849e-07	1.001210e-06	-5.999475e+00	...	2	32224023	...	6.206550e-08
TCGA-AR-A2LL-01A-11D-A17W-09	29	29	0	25	0	exome+100bp flanks	2	35956486	...	2	24	27	5.562279e-08	6.674735e-07	7.509076e-07	-6.124413e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A2LM-01A-11D-A17W-09	15	15	0	11	0	exome+100bp flanks	2	35956486	...	3	10	14	8.343418e-08	2.781139e-07	3.893595e-07	-6.409649e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A2LN-01A-21D-A18P-09	37	37	0	26	0	exome+100bp flanks	2	35956486	...	10	22	33	2.781139e-07	6.118507e-07	9.177760e-07	-6.037263e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A2LO-01A-31D-A18P-09	12	12	0	11	0	exome+100bp flanks	2	35956486	...	1	10	12	2.781139e-08	2.781139e-07	3.337367e-07	-6.476596e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A2LQ-01A-22D-A18P-09	6	5	1	4	1.666667e-01	exome+100bp flanks	2	35956486	...	1	3	4	2.781139e-08	8.343418e-08	1.112456e-07	-6.953717e+00	...	0	32224023	...	0
TCGA-AR-A2LR-01A-12D-A18P-09	63	62	1	50	1.587302e-02	coding only	1	28826511	...	12	41	59	4.162835e-07	1.422302e-06	2.046727e-06	-5.688940e+00	...	6	28770325	...	2.085482e-07
TCGA-AR-A5QM-01A-11D-A27P-09	34	29	5	24	1.470588e-01	exome+100bp flanks	2	35956486	...	5	23	33	1.390570e-07	6.396621e-07	9.177760e-07	-6.037263e+00	...	1	32224023	...	3.103275e-08
TCGA-AR-A5QN-01A-12D-A28B-09	43	38	5	28	1.162791e-01	exome+100bp flanks	2	35956486	...	9	21	38	2.503025e-07	5.840393e-07	1.056833e-06	-5.975994e+00	...	5	32224023	...	1.551637e-07
TCGA-AR-A5QP-01A-11D-A28B-09	26	23	3	21	1.153846e-01	exome+100bp flanks	2	35956486	...	1	16	22	2.781139e-08	4.449823e-07	6.118507e-07	-6.213355e+00	...	4	32224023	...	1.241310e-07
TCGA-AR-A5QQ-01A-11D-A28B-09	61	53	8	42	1.311475e-01	exome+100bp flanks	2	35956486	...	10	35	53	2.781139e-07	9.733988e-07	1.474004e-06	-5.831501e+00	...	4	32224023	...	1.241310e-07
TCGA-B6-A0I1-01A-11D-A21Q-09	64	53	11	39	1.718750e-01	exome+100bp flanks	2	35956486	...	13	31	52	3.615481e-07	8.621532e-07	1.446192e-06	-5.839774e+00	...	2	32224023	...	6.206550e-08
TCGA-B6-A0I2-01A-11W-A050-09	51	50	1	41	1.960784e-02	coding only	1	28826511	...	8	37	47	2.775223e-07	1.283541e-06	1.630444e-06	-5.787694e+00	...	2	28770325	...	6.951607e-08
TCGA-B6-A0I5-01A-11W-A100-09	23	22	1	18	4.347826e-02	exome+100bp flanks	2	35956486	...	4	14	21	1.112456e-07	3.893595e-07	5.840393e-07	-6.233558e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A0I6-01A-11D-A128-09	102	95	7	74	6.862745e-02	exome+100bp flanks	2	35956486	...	17	72	96	4.727937e-07	2.002420e-06	2.669894e-06	-5.573506e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0I8-01A-11W-A050-09	106	105	1	79	9.433962e-03	coding only	1	28826511	...	25	63	100	8.672572e-07	2.185488e-06	3.469029e-06	-5.459792e+00	...	11	28770325	...	3.823384e-07
TCGA-B6-A0I9-01A-11W-A050-09	73	69	4	58	5.479452e-02	exome+100bp flanks	2	35956486	...	11	51	70	3.059253e-07	1.418381e-06	1.946798e-06	-5.710679e+00	...	6	32224023	...	1.861965e-07
TCGA-B6-A0IA-01A-11W-A050-09	48	47	1	41	2.083333e-02	exome+100bp flanks	2	35956486	...	5	10	45	1.390570e-07	2.781139e-07	1.251513e-06	-5.902565e+00	...	29	32224023	...	8.999497e-07
TCGA-B6-A0IB-01A-11W-A050-09	57	56	1	50	1.754386e-02	coding only	1	28826511	...	6	36	53	2.081417e-07	1.248850e-06	1.838585e-06	-5.735516e+00	...	10	28770325	...	3.475804e-07
TCGA-B6-A0IC-01A-11W-A050-09	47	44	3	37	6.382979e-02	exome+100bp flanks	2	35956486	...	7	24	43	1.946798e-07	6.674735e-07	1.195890e-06	-5.922309e+00	...	11	32224023	...	3.413602e-07
TCGA-B6-A0IE-01A-11W-A050-09	31	31	0	27	0	exome+100bp flanks	2	35956486	...	4	22	30	1.112456e-07	6.118507e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-B6-A0IG-01A-11W-A050-09	45	45	0	40	0	exome+100bp flanks	2	35956486	...	5	26	43	1.390570e-07	7.230962e-07	1.195890e-06	-5.922309e+00	...	12	32224023	...	3.723930e-07
TCGA-B6-A0IH-01A-11D-A10Y-09	23	23	0	21	0	exome+100bp flanks	2	35956486	...	2	20	23	5.562279e-08	5.562279e-07	6.396621e-07	-6.194049e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0IJ-01A-11W-A050-09	136	133	3	113	2.205882e-02	coding only	1	28826511	...	19	100	125	6.591155e-07	3.469029e-06	4.336286e-06	-5.362882e+00	...	5	28770325	...	1.737902e-07
TCGA-B6-A0IK-01A-12W-A071-09	150	145	5	113	3.333333e-02	exome+100bp flanks	2	35956486	...	29	89	139	8.065304e-07	2.475214e-06	3.865784e-06	-5.412762e+00	...	20	32224023	...	6.206550e-07
TCGA-B6-A0IM-01A-11W-A050-09	35	33	2	27	5.714286e-02	exome+100bp flanks	2	35956486	...	6	19	32	1.668684e-07	5.284165e-07	8.899646e-07	-6.050627e+00	...	7	32224023	...	2.172292e-07
TCGA-B6-A0IN-01A-11W-A050-09	41	39	2	30	4.878049e-02	exome+100bp flanks	2	35956486	...	9	15	39	2.503025e-07	4.171709e-07	1.084644e-06	-5.964713e+00	...	14	32224023	...	4.344585e-07
TCGA-B6-A0IO-01A-11W-A050-09	68	64	4	50	5.882353e-02	exome+100bp flanks	2	35956486	...	14	39	65	3.893595e-07	1.084644e-06	1.807741e-06	-5.742864e+00	...	11	32224023	...	3.413602e-07
TCGA-B6-A0IP-01A-11D-A045-09	26	25	1	22	3.846154e-02	exome+100bp flanks	2	35956486	...	3	17	23	8.343418e-08	4.727937e-07	6.396621e-07	-6.194049e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A0IQ-01A-11W-A050-09	58	56	2	46	3.448276e-02	exome+100bp flanks	2	35956486	...	9	35	53	2.503025e-07	9.733988e-07	1.474004e-06	-5.831501e+00	...	9	32224023	...	2.792947e-07
TCGA-B6-A0RE-01A-11W-A071-09	103	100	3	80	2.912621e-02	coding only	1	28826511	...	20	64	95	6.938058e-07	2.220179e-06	3.295577e-06	-5.482068e+00	...	11	28770325	...	3.823384e-07
TCGA-B6-A0RG-01A-11W-A071-09	60	58	2	49	3.333333e-02	exome+100bp flanks	2	35956486	...	9	38	57	2.503025e-07	1.056833e-06	1.585249e-06	-5.799902e+00	...	10	32224023	...	3.103275e-07
TCGA-B6-A0RH-01A-21D-A10Y-09	40	36	4	30	1.000000e-01	exome+100bp flanks	2	35956486	...	6	25	35	1.668684e-07	6.952849e-07	9.733988e-07	-6.011709e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A0RI-01A-11W-A071-09	17	17	0	15	0	exome+100bp flanks	2	35956486	...	2	9	16	5.562279e-08	2.503025e-07	4.449823e-07	-6.351657e+00	...	5	32224023	...	1.551637e-07
TCGA-B6-A0RN-01A-12D-A099-09	39	38	1	29	2.564103e-02	exome+100bp flanks	2	35956486	...	9	24	37	2.503025e-07	6.674735e-07	1.029022e-06	-5.987576e+00	...	4	32224023	...	1.241310e-07
TCGA-B6-A0RO-01A-22D-A099-09	37	35	2	29	5.405405e-02	exome+100bp flanks	2	35956486	...	6	20	30	1.668684e-07	5.562279e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-B6-A0RP-01A-21D-A099-09	20	20	0	18	0	exome+100bp flanks	2	35956486	...	2	15	17	5.562279e-08	4.171709e-07	4.727937e-07	-6.325328e+00	...	0	32224023	...	0
TCGA-B6-A0RQ-01A-11D-A10Y-09	17	16	1	12	5.882353e-02	exome+100bp flanks	2	35956486	...	3	10	15	8.343418e-08	2.781139e-07	4.171709e-07	-6.379686e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0RT-01A-21D-A099-09	12	12	0	11	0	exome+100bp flanks	2	35956486	...	1	10	12	2.781139e-08	2.781139e-07	3.337367e-07	-6.476596e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0RU-01A-11D-A099-09	43	42	1	36	2.325581e-02	exome+100bp flanks	2	35956486	...	6	27	40	1.668684e-07	7.509076e-07	1.112456e-06	-5.953717e+00	...	6	32224023	...	1.861965e-07
TCGA-B6-A0RV-01A-11D-A099-09	46	45	1	31	2.173913e-02	exome+100bp flanks	2	35956486	...	14	27	43	3.893595e-07	7.509076e-07	1.195890e-06	-5.922309e+00	...	2	32224023	...	6.206550e-08
TCGA-B6-A0WS-01A-11D-A10Y-09	22	22	0	12	0	exome+100bp flanks	2	35956486	...	9	11	21	2.503025e-07	3.059253e-07	5.840393e-07	-6.233558e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0WT-01A-11D-A10G-09	19	19	0	15	0	exome+100bp flanks	2	35956486	...	4	13	18	1.112456e-07	3.615481e-07	5.006051e-07	-6.300505e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0WV-01A-11D-A10G-09	29	27	2	23	6.896552e-02	exome+100bp flanks	2	35956486	...	4	16	27	1.112456e-07	4.449823e-07	7.509076e-07	-6.124413e+00	...	7	32224023	...	2.172292e-07
TCGA-B6-A0WW-01A-11D-A10G-09	38	38	0	29	0	exome+100bp flanks	2	35956486	...	9	24	36	2.503025e-07	6.674735e-07	1.001210e-06	-5.999475e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A0WX-01A-11D-A10G-09	30	30	0	22	0	exome+100bp flanks	2	35956486	...	7	20	28	1.946798e-07	5.562279e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0WY-01A-11D-A10G-09	15	13	2	12	1.333333e-01	exome+100bp flanks	2	35956486	...	1	11	13	2.781139e-08	3.059253e-07	3.615481e-07	-6.441834e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0WZ-01A-11D-A10G-09	39	39	0	25	0	exome+100bp flanks	2	35956486	...	12	24	36	3.337367e-07	6.674735e-07	1.001210e-06	-5.999475e+00	...	0	32224023	...	0
TCGA-B6-A0X0-01A-21D-A10Y-09	21	21	0	16	0	exome+100bp flanks	2	35956486	...	5	14	20	1.390570e-07	3.893595e-07	5.562279e-07	-6.254747e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A0X1-01A-11D-A10G-09	64	60	4	47	6.250000e-02	exome+100bp flanks	2	35956486	...	12	42	57	3.337367e-07	1.168079e-06	1.585249e-06	-5.799902e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A0X4-01A-11D-A10G-09	19	19	0	16	0	exome+100bp flanks	2	35956486	...	3	14	19	8.343418e-08	3.893595e-07	5.284165e-07	-6.277024e+00	...	2	32224023	...	6.206550e-08
TCGA-B6-A0X5-01A-21D-A10G-09	33	32	1	22	3.030303e-02	exome+100bp flanks	2	35956486	...	10	17	30	2.781139e-07	4.727937e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A0X7-01A-11D-A10M-09	19	18	1	11	5.263158e-02	exome+100bp flanks	2	35956486	...	6	8	17	1.668684e-07	2.224912e-07	4.727937e-07	-6.325328e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A1KC-01B-11D-A159-09	26	25	1	19	3.846154e-02	exome+100bp flanks	2	35956486	...	6	15	24	1.668684e-07	4.171709e-07	6.674735e-07	-6.175566e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A1KF-01A-11D-A13L-09	52	51	1	40	1.923077e-02	coding only	1	28826511	...	7	32	44	2.428320e-07	1.110089e-06	1.526373e-06	-5.816339e+00	...	5	28770325	...	1.737902e-07
TCGA-B6-A1KI-01A-11D-A14K-09	20	19	1	15	5.000000e-02	exome+100bp flanks	2	35956486	...	4	11	17	1.112456e-07	3.059253e-07	4.727937e-07	-6.325328e+00	...	2	32224023	...	6.206550e-08
TCGA-B6-A1KN-01A-11D-A13L-09	55	53	2	46	3.636364e-02	exome+100bp flanks	2	35956486	...	7	41	52	1.946798e-07	1.140267e-06	1.446192e-06	-5.839774e+00	...	3	32224023	...	9.309825e-08
TCGA-B6-A2IU-01A-32D-A19T-09	43	42	1	33	2.325581e-02	exome+100bp flanks	2	35956486	...	8	28	36	2.224912e-07	7.787190e-07	1.001210e-06	-5.999475e+00	...	0	32224023	...	0
TCGA-B6-A3ZX-01A-11D-A23C-09	57	49	8	36	1.403509e-01	exome+100bp flanks	2	35956486	...	13	30	46	3.615481e-07	8.343418e-07	1.279324e-06	-5.893019e+00	...	2	32224023	...	6.206550e-08
TCGA-B6-A400-01A-11D-A23C-09	134	119	15	97	1.119403e-01	exome+100bp flanks	2	35956486	...	21	88	123	5.840393e-07	2.447403e-06	3.420801e-06	-5.465872e+00	...	6	32224023	...	1.861965e-07
TCGA-B6-A401-01A-11D-A23C-09	24	20	4	16	1.666667e-01	exome+100bp flanks	2	35956486	...	4	14	21	1.112456e-07	3.893595e-07	5.840393e-07	-6.233558e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A402-01A-11D-A23C-09	67	56	11	41	1.641791e-01	exome+100bp flanks	2	35956486	...	11	33	52	3.059253e-07	9.177760e-07	1.446192e-06	-5.839774e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A408-01A-12D-A243-09	52	44	8	31	1.538462e-01	exome+100bp flanks	2	35956486	...	12	23	45	3.337367e-07	6.396621e-07	1.251513e-06	-5.902565e+00	...	7	32224023	...	2.172292e-07
TCGA-B6-A409-01A-11D-A243-09	38	35	3	24	7.894737e-02	exome+100bp flanks	2	35956486	...	10	22	34	2.781139e-07	6.118507e-07	9.455874e-07	-6.024298e+00	...	1	32224023	...	3.103275e-08
TCGA-B6-A40B-01A-11D-A23C-09	64	55	9	44	1.406250e-01	exome+100bp flanks	2	35956486	...	9	40	54	2.503025e-07	1.112456e-06	1.501815e-06	-5.823383e+00	...	0	32224023	...	0
TCGA-B6-A40C-01A-11D-A23C-09	40	39	1	29	2.500000e-02	exome+100bp flanks	2	35956486	...	9	24	36	2.503025e-07	6.674735e-07	1.001210e-06	-5.999475e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0AU-01A-11D-A12Q-09	20	20	0	14	0	exome+100bp flanks	2	35956486	...	6	11	19	1.668684e-07	3.059253e-07	5.284165e-07	-6.277024e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0AV-01A-31D-A10Y-09	67	65	2	47	2.985075e-02	coding only	1	28826511	...	16	42	62	5.550446e-07	1.456992e-06	2.150798e-06	-5.667400e+00	...	4	28770325	...	1.390321e-07
TCGA-BH-A0AW-01A-11W-A071-09	146	143	3	108	2.054795e-02	coding only	1	28826511	...	34	93	137	1.179470e-06	3.226197e-06	4.752570e-06	-5.323072e+00	...	9	28770325	...	3.128223e-07
TCGA-BH-A0AY-01A-21W-A019-09	57	54	3	44	5.263158e-02	exome+100bp flanks	2	35956486	...	10	29	54	2.781139e-07	8.065304e-07	1.501815e-06	-5.823383e+00	...	14	32224023	...	4.344585e-07
TCGA-BH-A0AZ-01A-21D-A12Q-09	59	58	1	45	1.694915e-02	coding only	1	28826511	...	12	38	53	4.162835e-07	1.318231e-06	1.838585e-06	-5.735516e+00	...	3	28770325	...	1.042741e-07
TCGA-BH-A0B0-01A-21D-A10Y-09	51	49	2	38	3.921569e-02	exome+100bp flanks	2	35956486	...	9	33	43	2.503025e-07	9.177760e-07	1.195890e-06	-5.922309e+00	...	0	32224023	...	0
TCGA-BH-A0B1-01A-12W-A071-09	60	60	0	50	0	coding only	1	28826511	...	10	30	57	3.469029e-07	1.040709e-06	1.977346e-06	-5.703917e+00	...	17	28770325	...	5.908866e-07
TCGA-BH-A0B3-01A-11W-A071-09	39	35	4	28	1.025641e-01	exome+100bp flanks	2	35956486	...	7	23	33	1.946798e-07	6.396621e-07	9.177760e-07	-6.037263e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0B4-01A-11W-A019-09	65	64	1	57	1.538462e-02	coding only	1	28826511	...	7	49	61	2.428320e-07	1.699824e-06	2.116108e-06	-5.674462e+00	...	5	28770325	...	1.737902e-07
TCGA-BH-A0B5-01A-11D-A12Q-09	64	63	1	52	1.562500e-02	coding only	1	28826511	...	9	46	58	3.122126e-07	1.595753e-06	2.012037e-06	-5.696364e+00	...	3	28770325	...	1.042741e-07
TCGA-BH-A0B6-01A-11D-A19Y-09	830	741	89	540	1.072289e-01	exome+100bp flanks	2	35956486	...	183	506	751	5.089485e-06	1.407257e-05	2.088636e-05	-4.680137e+00	...	0	32224023	...	0
TCGA-BH-A0B7-01A-12D-A10Y-09	14	13	1	12	7.142857e-02	exome+100bp flanks	2	35956486	...	1	12	14	2.781139e-08	3.337367e-07	3.893595e-07	-6.409649e+00	...	0	32224023	...	0
TCGA-BH-A0B8-01A-21W-A071-09	42	41	1	34	2.380952e-02	exome+100bp flanks	2	35956486	...	7	22	40	1.946798e-07	6.118507e-07	1.112456e-06	-5.953717e+00	...	11	32224023	...	3.413602e-07
TCGA-BH-A0B9-01A-11W-A071-09	38	38	0	32	0	exome+100bp flanks	2	35956486	...	6	24	36	1.668684e-07	6.674735e-07	1.001210e-06	-5.999475e+00	...	6	32224023	...	1.861965e-07
TCGA-BH-A0BA-01A-11W-A071-09	31	28	3	23	9.677419e-02	exome+100bp flanks	2	35956486	...	5	20	27	1.390570e-07	5.562279e-07	7.509076e-07	-6.124413e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0BC-01A-22D-A099-09	34	33	1	25	2.941176e-02	exome+100bp flanks	2	35956486	...	8	23	32	2.224912e-07	6.396621e-07	8.899646e-07	-6.050627e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0BD-01A-11W-A050-09	18	17	1	15	5.555556e-02	exome+100bp flanks	2	35956486	...	2	11	17	5.562279e-08	3.059253e-07	4.727937e-07	-6.325328e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0BF-01A-21D-A12Q-09	31	28	3	20	9.677419e-02	exome+100bp flanks	2	35956486	...	8	17	30	2.224912e-07	4.727937e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0BG-01A-11D-A10Y-09	43	39	4	29	9.302326e-02	exome+100bp flanks	2	35956486	...	10	25	37	2.781139e-07	6.952849e-07	1.029022e-06	-5.987576e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0BJ-01A-11W-A071-09	28	27	1	24	3.571429e-02	exome+100bp flanks	2	35956486	...	3	12	28	8.343418e-08	3.337367e-07	7.787190e-07	-6.108619e+00	...	12	32224023	...	3.723930e-07
TCGA-BH-A0BL-01A-11D-A10Y-09	54	53	1	47	1.851852e-02	coding only	1	28826511	...	6	41	51	2.081417e-07	1.422302e-06	1.769205e-06	-5.752222e+00	...	4	28770325	...	1.390321e-07
TCGA-BH-A0BM-01A-11W-A071-09	40	38	2	30	5.000000e-02	exome+100bp flanks	2	35956486	...	8	13	38	2.224912e-07	3.615481e-07	1.056833e-06	-5.975994e+00	...	17	32224023	...	5.275567e-07
TCGA-BH-A0BO-01A-23D-A12B-09	24	24	0	22	0	exome+100bp flanks	2	35956486	...	2	17	22	5.562279e-08	4.727937e-07	6.118507e-07	-6.213355e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0BP-01A-11D-A10Y-09	136	134	2	109	1.470588e-02	coding only	1	28826511	...	24	96	126	8.325669e-07	3.330268e-06	4.370976e-06	-5.359422e+00	...	5	28770325	...	1.737902e-07
TCGA-BH-A0BQ-01A-21D-A10Y-09	22	21	1	16	4.545455e-02	exome+100bp flanks	2	35956486	...	5	15	20	1.390570e-07	4.171709e-07	5.562279e-07	-6.254747e+00	...	0	32224023	...	0
TCGA-BH-A0BR-01A-21W-A12T-09	59	58	1	50	1.694915e-02	coding only	1	28826511	...	7	36	53	2.428320e-07	1.248850e-06	1.838585e-06	-5.735516e+00	...	10	28770325	...	3.475804e-07
TCGA-BH-A0BS-01A-11D-A12Q-09	14	14	0	10	0	exome+100bp flanks	2	35956486	...	4	7	13	1.112456e-07	1.946798e-07	3.615481e-07	-6.441834e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0BT-01A-11D-A12Q-09	35	34	1	28	2.857143e-02	exome+100bp flanks	2	35956486	...	3	26	31	8.343418e-08	7.230962e-07	8.621532e-07	-6.064416e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0BV-01A-11W-A019-09	33	32	1	27	3.030303e-02	exome+100bp flanks	2	35956486	...	5	19	31	1.390570e-07	5.284165e-07	8.621532e-07	-6.064416e+00	...	6	32224023	...	1.861965e-07
TCGA-BH-A0BW-01A-11D-A10Y-09	92	90	2	76	2.173913e-02	coding only	1	28826511	...	13	56	82	4.509738e-07	1.942656e-06	2.844604e-06	-5.545978e+00	...	13	28770325	...	4.518545e-07
TCGA-BH-A0BZ-01A-31D-A12Q-09	222	219	3	183	1.351351e-02	coding only	1	28826511	...	36	168	215	1.248850e-06	5.827969e-06	7.458412e-06	-5.127354e+00	...	10	28770325	...	3.475804e-07
TCGA-BH-A0C0-01A-21W-A071-09	74	71	3	62	4.054054e-02	exome+100bp flanks	2	35956486	...	8	57	68	2.224912e-07	1.585249e-06	1.891175e-06	-5.723268e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0C1-01B-11D-A12B-09	33	30	3	22	9.090909e-02	exome+100bp flanks	2	35956486	...	7	19	27	1.946798e-07	5.284165e-07	7.509076e-07	-6.124413e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0C3-01A-21D-A12Q-09	14	14	0	10	0	exome+100bp flanks	2	35956486	...	4	8	13	1.112456e-07	2.224912e-07	3.615481e-07	-6.441834e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0C7-01B-11D-A10Y-09	37	36	1	30	2.702703e-02	exome+100bp flanks	2	35956486	...	6	25	35	1.668684e-07	6.952849e-07	9.733988e-07	-6.011709e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A0DD-01A-31D-A12Q-09	21	21	0	13	0	exome+100bp flanks	2	35956486	...	7	10	18	1.946798e-07	2.781139e-07	5.006051e-07	-6.300505e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0DE-01A-11D-A10Y-09	31	29	2	24	6.451613e-02	exome+100bp flanks	2	35956486	...	5	22	28	1.390570e-07	6.118507e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0DG-01A-21D-A12Q-09	24	24	0	23	0	exome+100bp flanks	2	35956486	...	1	21	23	2.781139e-08	5.840393e-07	6.396621e-07	-6.194049e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0DH-01A-11D-A099-09	40	37	3	31	7.500000e-02	exome+100bp flanks	2	35956486	...	5	26	35	1.390570e-07	7.230962e-07	9.733988e-07	-6.011709e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0DI-01A-21D-A12Q-09	31	30	1	23	3.225806e-02	exome+100bp flanks	2	35956486	...	6	23	29	1.668684e-07	6.396621e-07	8.065304e-07	-6.093379e+00	...	0	32224023	...	0
TCGA-BH-A0DK-01A-21W-A071-09	89	84	5	72	5.617978e-02	exome+100bp flanks	2	35956486	...	12	63	82	3.337367e-07	1.752118e-06	2.280534e-06	-5.641963e+00	...	7	32224023	...	2.172292e-07
TCGA-BH-A0DL-01A-11D-A10Y-09	43	42	1	36	2.325581e-02	exome+100bp flanks	2	35956486	...	5	32	39	1.390570e-07	8.899646e-07	1.084644e-06	-5.964713e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0DO-01B-11D-A12B-09	22	20	2	13	9.090909e-02	exome+100bp flanks	2	35956486	...	5	10	19	1.390570e-07	2.781139e-07	5.284165e-07	-6.277024e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0DP-01A-21W-A071-09	40	38	2	33	5.000000e-02	exome+100bp flanks	2	35956486	...	4	20	35	1.112456e-07	5.562279e-07	9.733988e-07	-6.011709e+00	...	11	32224023	...	3.413602e-07
TCGA-BH-A0DQ-01A-11D-A099-09	27	27	0	24	0	exome+100bp flanks	2	35956486	...	3	19	25	8.343418e-08	5.284165e-07	6.952849e-07	-6.157837e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0DS-01A-11W-A071-09	31	29	2	22	6.451613e-02	exome+100bp flanks	2	35956486	...	6	16	26	1.668684e-07	4.449823e-07	7.230962e-07	-6.140804e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A0DT-01A-21D-A12B-09	14	14	0	12	0	exome+100bp flanks	2	35956486	...	2	7	13	5.562279e-08	1.946798e-07	3.615481e-07	-6.441834e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A0DV-01A-21D-A12Q-09	5	5	0	4	0	exome+100bp flanks	2	35956486	...	1	3	5	2.781139e-08	8.343418e-08	1.390570e-07	-6.856807e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0DX-01A-11D-A10Y-09	61	61	0	55	0	coding only	1	28826511	...	4	50	55	1.387612e-07	1.734514e-06	1.907966e-06	-5.719429e+00	...	1	28770325	...	3.475804e-08
TCGA-BH-A0DZ-01A-11W-A019-09	267	261	6	187	2.247191e-02	coding only	1	28826511	...	69	177	250	2.393630e-06	6.140181e-06	8.672572e-06	-5.061852e+00	...	4	28770325	...	1.390321e-07
TCGA-BH-A0E0-01A-11W-A071-09	29	29	0	24	0	exome+100bp flanks	2	35956486	...	5	20	27	1.390570e-07	5.562279e-07	7.509076e-07	-6.124413e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0E1-01A-11W-A071-09	34	34	0	24	0	exome+100bp flanks	2	35956486	...	9	20	33	2.503025e-07	5.562279e-07	9.177760e-07	-6.037263e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A0E2-01A-11W-A071-09	36	36	0	30	0	exome+100bp flanks	2	35956486	...	6	22	36	1.668684e-07	6.118507e-07	1.001210e-06	-5.999475e+00	...	8	32224023	...	2.482620e-07
TCGA-BH-A0E6-01A-11W-A050-09	55	53	2	45	3.636364e-02	exome+100bp flanks	2	35956486	...	8	34	52	2.224912e-07	9.455874e-07	1.446192e-06	-5.839774e+00	...	10	32224023	...	3.103275e-07
TCGA-BH-A0E7-01A-11W-A050-09	48	48	0	39	0	exome+100bp flanks	2	35956486	...	8	26	44	2.224912e-07	7.230962e-07	1.223701e-06	-5.912325e+00	...	10	32224023	...	3.103275e-07
TCGA-BH-A0E9-01B-11D-A10Y-09	12	11	1	9	8.333333e-02	exome+100bp flanks	2	35956486	...	2	4	12	5.562279e-08	1.112456e-07	3.337367e-07	-6.476596e+00	...	5	32224023	...	1.551637e-07
TCGA-BH-A0EA-01A-11D-A10Y-09	21	21	0	17	0	exome+100bp flanks	2	35956486	...	4	16	21	1.112456e-07	4.449823e-07	5.840393e-07	-6.233558e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0EB-01A-11W-A050-09	38	36	2	27	5.263158e-02	exome+100bp flanks	2	35956486	...	8	21	32	2.224912e-07	5.840393e-07	8.899646e-07	-6.050627e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0EE-01A-11W-A050-09	80	76	4	66	5.000000e-02	exome+100bp flanks	2	35956486	...	9	59	75	2.503025e-07	1.640872e-06	2.085855e-06	-5.680716e+00	...	6	32224023	...	1.861965e-07
TCGA-BH-A0EI-01A-11D-A10Y-09	18	16	2	13	1.111111e-01	exome+100bp flanks	2	35956486	...	3	12	16	8.343418e-08	3.337367e-07	4.449823e-07	-6.351657e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0GY-01A-11W-A071-09	45	44	1	38	2.222222e-02	exome+100bp flanks	2	35956486	...	6	20	41	1.668684e-07	5.562279e-07	1.140267e-06	-5.942993e+00	...	15	32224023	...	4.654912e-07
TCGA-BH-A0GZ-01A-11W-A071-09	28	27	1	23	3.571429e-02	exome+100bp flanks	2	35956486	...	3	19	26	8.343418e-08	5.284165e-07	7.230962e-07	-6.140804e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A0H0-01A-11W-A071-09	20	20	0	14	0	exome+100bp flanks	2	35956486	...	5	11	18	1.390570e-07	3.059253e-07	5.006051e-07	-6.300505e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0H3-01A-11D-A12Q-09	16	16	0	13	0	exome+100bp flanks	2	35956486	...	1	10	14	2.781139e-08	2.781139e-07	3.893595e-07	-6.409649e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0H5-01A-21D-A10Y-09	8	7	1	5	1.250000e-01	exome+100bp flanks	2	35956486	...	2	4	6	5.562279e-08	1.112456e-07	1.668684e-07	-6.777626e+00	...	0	32224023	...	0
TCGA-BH-A0H6-01A-21W-A071-09	17	16	1	12	5.882353e-02	exome+100bp flanks	2	35956486	...	4	11	17	1.112456e-07	3.059253e-07	4.727937e-07	-6.325328e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A0H7-01A-13W-A071-09	63	61	2	50	3.174603e-02	exome+100bp flanks	2	35956486	...	11	36	60	3.059253e-07	1.001210e-06	1.668684e-06	-5.777626e+00	...	13	32224023	...	4.034257e-07
TCGA-BH-A0H9-01A-11W-A071-09	41	39	2	32	4.878049e-02	exome+100bp flanks	2	35956486	...	7	26	39	1.946798e-07	7.230962e-07	1.084644e-06	-5.964713e+00	...	5	32224023	...	1.551637e-07
TCGA-BH-A0HA-01A-11D-A12Q-09	287	281	6	227	2.090592e-02	coding only	1	28826511	...	48	158	268	1.665134e-06	5.481066e-06	9.296997e-06	-5.031657e+00	...	62	28770325	...	2.154998e-06
TCGA-BH-A0HB-01A-11W-A071-09	33	32	1	27	3.030303e-02	exome+100bp flanks	2	35956486	...	5	22	31	1.390570e-07	6.118507e-07	8.621532e-07	-6.064416e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A0HF-01A-11W-A071-09	929	877	52	600	5.597417e-02	exome+100bp flanks	2	35956486	...	269	556	890	7.481265e-06	1.546314e-05	2.475214e-05	-4.606387e+00	...	27	32224023	...	8.378842e-07
TCGA-BH-A0HI-01A-11D-A099-09	25	25	0	22	0	exome+100bp flanks	2	35956486	...	3	15	22	8.343418e-08	4.171709e-07	6.118507e-07	-6.213355e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A0HK-01A-11W-A071-09	105	103	2	80	1.904762e-02	coding only	1	28826511	...	22	61	96	7.631864e-07	2.116108e-06	3.330268e-06	-5.477521e+00	...	13	28770325	...	4.518545e-07
TCGA-BH-A0HL-01A-11W-A050-09	36	36	0	29	0	exome+100bp flanks	2	35956486	...	6	16	34	1.668684e-07	4.449823e-07	9.455874e-07	-6.024298e+00	...	12	32224023	...	3.723930e-07
TCGA-BH-A0HN-01A-11D-A099-09	27	25	2	20	7.407407e-02	exome+100bp flanks	2	35956486	...	4	18	25	1.112456e-07	5.006051e-07	6.952849e-07	-6.157837e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0HO-01A-11W-A050-09	22	21	1	15	4.545455e-02	exome+100bp flanks	2	35956486	...	6	11	21	1.668684e-07	3.059253e-07	5.840393e-07	-6.233558e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A0HP-01A-12D-A099-09	237	234	3	179	1.265823e-02	coding only	1	28826511	...	50	167	219	1.734514e-06	5.793278e-06	7.597173e-06	-5.119348e+00	...	2	28770325	...	6.951607e-08
TCGA-BH-A0HQ-01A-11W-A050-09	32	30	2	25	6.250000e-02	exome+100bp flanks	2	35956486	...	5	15	27	1.390570e-07	4.171709e-07	7.509076e-07	-6.124413e+00	...	7	32224023	...	2.172292e-07
TCGA-BH-A0HU-01A-11W-A050-09	34	33	1	27	2.941176e-02	exome+100bp flanks	2	35956486	...	4	23	29	1.112456e-07	6.396621e-07	8.065304e-07	-6.093379e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0HW-01A-11W-A050-09	39	38	1	31	2.564103e-02	exome+100bp flanks	2	35956486	...	7	22	39	1.946798e-07	6.118507e-07	1.084644e-06	-5.964713e+00	...	9	32224023	...	2.792947e-07
TCGA-BH-A0HX-01A-21W-A071-09	57	57	0	44	0	coding only	1	28826511	...	13	34	57	4.509738e-07	1.179470e-06	1.977346e-06	-5.703917e+00	...	10	28770325	...	3.475804e-07
TCGA-BH-A0HY-01A-11W-A071-09	53	53	0	41	0	coding only	1	28826511	...	10	34	49	3.469029e-07	1.179470e-06	1.699824e-06	-5.769596e+00	...	5	28770325	...	1.737902e-07
TCGA-BH-A0RX-01A-21D-A099-09	19	19	0	15	0	exome+100bp flanks	2	35956486	...	4	11	18	1.112456e-07	3.059253e-07	5.006051e-07	-6.300505e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A0W3-01A-11D-A10G-09	20	20	0	13	0	exome+100bp flanks	2	35956486	...	6	11	19	1.668684e-07	3.059253e-07	5.284165e-07	-6.277024e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0W4-01A-11D-A10G-09	30	30	0	26	0	exome+100bp flanks	2	35956486	...	4	21	27	1.112456e-07	5.840393e-07	7.509076e-07	-6.124413e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0W5-01A-11D-A10G-09	25	24	1	21	4.000000e-02	exome+100bp flanks	2	35956486	...	3	18	23	8.343418e-08	5.006051e-07	6.396621e-07	-6.194049e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A0W7-01A-11D-A10Y-09	176	173	3	124	1.704545e-02	coding only	1	28826511	...	46	116	164	1.595753e-06	4.024074e-06	5.689207e-06	-5.244948e+00	...	0	28770325	...	0
TCGA-BH-A0WA-01A-11D-A10G-09	89	86	3	70	3.370787e-02	exome+100bp flanks	2	35956486	...	15	66	84	4.171709e-07	1.835552e-06	2.336157e-06	-5.631498e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A18F-01A-11D-A12B-09	54	52	2	39	3.703704e-02	exome+100bp flanks	2	35956486	...	13	34	51	3.615481e-07	9.455874e-07	1.418381e-06	-5.848207e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A18G-01A-11D-A12B-09	1474	1361	113	1068	7.666214e-02	exome+100bp flanks	2	35956486	...	277	828	1369	7.703756e-06	2.302783e-05	3.807380e-05	-4.419374e+00	...	184	32224023	...	5.710026e-06
TCGA-BH-A18H-01A-11D-A12B-09	29	29	0	24	0	exome+100bp flanks	2	35956486	...	5	22	28	1.390570e-07	6.118507e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A18I-01A-11D-A12B-09	24	24	0	19	0	exome+100bp flanks	2	35956486	...	5	16	24	1.390570e-07	4.449823e-07	6.674735e-07	-6.175566e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A18J-01A-11D-A12B-09	63	60	3	48	4.761905e-02	exome+100bp flanks	2	35956486	...	12	45	58	3.337367e-07	1.251513e-06	1.613061e-06	-5.792349e+00	...	0	32224023	...	0
TCGA-BH-A18K-01A-11D-A12B-09	43	43	0	30	0	exome+100bp flanks	2	35956486	...	12	22	40	3.337367e-07	6.118507e-07	1.112456e-06	-5.953717e+00	...	6	32224023	...	1.861965e-07
TCGA-BH-A18L-01A-32D-A12B-09	40	38	2	30	5.000000e-02	exome+100bp flanks	2	35956486	...	8	27	38	2.224912e-07	7.509076e-07	1.056833e-06	-5.975994e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A18M-01A-11D-A12B-09	13	12	1	11	7.692308e-02	exome+100bp flanks	2	35956486	...	1	9	13	2.781139e-08	2.503025e-07	3.615481e-07	-6.441834e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A18N-01A-11D-A12B-09	31	31	0	27	0	exome+100bp flanks	2	35956486	...	4	23	30	1.112456e-07	6.396621e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A18P-01A-11D-A12B-09	315	310	5	233	1.587302e-02	coding only	1	28826511	...	73	219	298	2.532391e-06	7.597173e-06	1.033771e-05	-4.985576e+00	...	5	28770325	...	1.737902e-07
TCGA-BH-A18Q-01A-12D-A12B-09	78	78	0	59	0	coding only	1	28826511	...	19	53	76	6.591155e-07	1.838585e-06	2.636462e-06	-5.578978e+00	...	4	28770325	...	1.390321e-07
TCGA-BH-A18R-01A-11D-A12B-09	26	25	1	18	3.846154e-02	exome+100bp flanks	2	35956486	...	7	13	22	1.946798e-07	3.615481e-07	6.118507e-07	-6.213355e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A18S-01A-11D-A12B-09	25	24	1	18	4.000000e-02	exome+100bp flanks	2	35956486	...	6	17	24	1.668684e-07	4.727937e-07	6.674735e-07	-6.175566e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A18T-01A-11D-A12B-09	73	72	1	55	1.369863e-02	coding only	1	28826511	...	16	53	71	5.550446e-07	1.838585e-06	2.463011e-06	-5.608534e+00	...	1	28770325	...	3.475804e-08
TCGA-BH-A18U-01A-21D-A12B-09	96	94	2	64	2.083333e-02	coding only	1	28826511	...	28	57	90	9.713281e-07	1.977346e-06	3.122126e-06	-5.505550e+00	...	5	28770325	...	1.737902e-07
TCGA-BH-A18V-01A-11D-A12B-09	183	179	4	143	2.185792e-02	coding only	1	28826511	...	34	131	169	1.179470e-06	4.544428e-06	5.862659e-06	-5.231905e+00	...	2	28770325	...	6.951607e-08
TCGA-BH-A1EN-01A-11D-A17G-09	47	46	1	35	2.127660e-02	exome+100bp flanks	2	35956486	...	11	31	44	3.059253e-07	8.621532e-07	1.223701e-06	-5.912325e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A1EO-01A-11D-A135-09	33	30	3	27	9.090909e-02	exome+100bp flanks	2	35956486	...	2	23	27	5.562279e-08	6.396621e-07	7.509076e-07	-6.124413e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A1ES-01A-11D-A135-09	18	17	1	16	5.555556e-02	exome+100bp flanks	2	35956486	...	1	13	17	2.781139e-08	3.615481e-07	4.727937e-07	-6.325328e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A1ET-01A-11D-A135-09	23	23	0	18	0	exome+100bp flanks	2	35956486	...	4	14	18	1.112456e-07	3.893595e-07	5.006051e-07	-6.300505e+00	...	0	32224023	...	0
TCGA-BH-A1EU-01A-11D-A135-09	16	16	0	13	0	exome+100bp flanks	2	35956486	...	3	11	16	8.343418e-08	3.059253e-07	4.449823e-07	-6.351657e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A1EV-01A-11D-A135-09	84	84	0	67	0	coding only	1	28826511	...	16	62	79	5.550446e-07	2.150798e-06	2.740533e-06	-5.562165e+00	...	1	28770325	...	3.475804e-08
TCGA-BH-A1EW-01A-11D-A135-09	14	13	1	9	7.142857e-02	exome+100bp flanks	2	35956486	...	4	7	11	1.112456e-07	1.946798e-07	3.059253e-07	-6.514385e+00	...	0	32224023	...	0
TCGA-BH-A1EX-01A-11D-A13L-09	13	12	1	11	7.692308e-02	exome+100bp flanks	2	35956486	...	1	11	12	2.781139e-08	3.059253e-07	3.337367e-07	-6.476596e+00	...	0	32224023	...	0
TCGA-BH-A1EY-01A-11D-A13L-09	43	43	0	28	0	exome+100bp flanks	2	35956486	...	15	27	42	4.171709e-07	7.509076e-07	1.168079e-06	-5.932528e+00	...	0	32224023	...	0
TCGA-BH-A1F0-01A-11D-A135-09	21	21	0	15	0	exome+100bp flanks	2	35956486	...	6	12	19	1.668684e-07	3.337367e-07	5.284165e-07	-6.277024e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A1F2-01A-31D-A13L-09	46	44	2	30	4.347826e-02	exome+100bp flanks	2	35956486	...	14	26	41	3.893595e-07	7.230962e-07	1.140267e-06	-5.942993e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A1F5-01A-12D-A13L-09	31	31	0	25	0	exome+100bp flanks	2	35956486	...	6	20	27	1.668684e-07	5.562279e-07	7.509076e-07	-6.124413e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A1F6-01A-11D-A13L-09	67	64	3	45	4.477612e-02	exome+100bp flanks	2	35956486	...	19	28	61	5.284165e-07	7.787190e-07	1.696495e-06	-5.770447e+00	...	14	32224023	...	4.344585e-07
TCGA-BH-A1F8-01A-11D-A13L-09	135	135	0	106	0	coding only	1	28826511	...	28	93	124	9.713281e-07	3.226197e-06	4.301596e-06	-5.366370e+00	...	3	28770325	...	1.042741e-07
TCGA-BH-A1FC-01A-11D-A13L-09	74	72	2	63	2.702703e-02	coding only	1	28826511	...	7	54	64	2.428320e-07	1.873276e-06	2.220179e-06	-5.653612e+00	...	3	28770325	...	1.042741e-07
TCGA-BH-A1FD-01A-11W-A14Q-09	28	27	1	22	3.571429e-02	exome+100bp flanks	2	35956486	...	5	16	24	1.390570e-07	4.449823e-07	6.674735e-07	-6.175566e+00	...	3	32224023	...	9.309825e-08
TCGA-BH-A1FE-01A-11D-A13L-09	13	12	1	11	7.692308e-02	exome+100bp flanks	2	35956486	...	1	10	13	2.781139e-08	2.781139e-07	3.615481e-07	-6.441834e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A1FG-01A-11D-A13L-09	18	17	1	13	5.555556e-02	exome+100bp flanks	2	35956486	...	3	12	16	8.343418e-08	3.337367e-07	4.449823e-07	-6.351657e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A1FH-01A-12D-A13L-09	4	4	0	2	0	exome+100bp flanks	2	35956486	...	2	1	4	5.562279e-08	2.781139e-08	1.112456e-07	-6.953717e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A1FJ-01A-11D-A13L-09	27	27	0	20	0	exome+100bp flanks	2	35956486	...	7	18	27	1.946798e-07	5.006051e-07	7.509076e-07	-6.124413e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A1FL-01A-11D-A13L-09	23	22	1	20	4.347826e-02	exome+100bp flanks	2	35956486	...	1	17	20	2.781139e-08	4.727937e-07	5.562279e-07	-6.254747e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A1FM-01A-11D-A13L-09	37	36	1	31	2.702703e-02	exome+100bp flanks	2	35956486	...	5	28	35	1.390570e-07	7.787190e-07	9.733988e-07	-6.011709e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A1FN-01A-11D-A13L-09	109	108	1	85	9.174312e-03	coding only	1	28826511	...	22	74	100	7.631864e-07	2.567081e-06	3.469029e-06	-5.459792e+00	...	4	28770325	...	1.390321e-07
TCGA-BH-A1FR-01A-11D-A13L-09	14	13	1	12	7.142857e-02	exome+100bp flanks	2	35956486	...	1	10	11	2.781139e-08	2.781139e-07	3.059253e-07	-6.514385e+00	...	0	32224023	...	0
TCGA-BH-A1FU-01A-11D-A14G-09	27	27	0	21	0	exome+100bp flanks	2	35956486	...	6	19	26	1.668684e-07	5.284165e-07	7.230962e-07	-6.140804e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A201-01A-11D-A14K-09	17	16	1	14	5.882353e-02	exome+100bp flanks	2	35956486	...	2	14	16	5.562279e-08	3.893595e-07	4.449823e-07	-6.351657e+00	...	0	32224023	...	0
TCGA-BH-A202-01A-11D-A14K-09	28	28	0	24	0	exome+100bp flanks	2	35956486	...	4	20	28	1.112456e-07	5.562279e-07	7.787190e-07	-6.108619e+00	...	4	32224023	...	1.241310e-07
TCGA-BH-A203-01A-12D-A167-09	59	59	0	43	0	coding only	1	28826511	...	16	38	55	5.550446e-07	1.318231e-06	1.907966e-06	-5.719429e+00	...	1	28770325	...	3.475804e-08
TCGA-BH-A204-01A-11D-A159-09	40	39	1	34	2.500000e-02	exome+100bp flanks	2	35956486	...	5	29	37	1.390570e-07	8.065304e-07	1.029022e-06	-5.987576e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A208-01A-11D-A159-09	57	55	2	45	3.508772e-02	exome+100bp flanks	2	35956486	...	10	40	53	2.781139e-07	1.112456e-06	1.474004e-06	-5.831501e+00	...	2	32224023	...	6.206550e-08
TCGA-BH-A209-01A-11D-A17G-09	75	73	2	54	2.666667e-02	coding only	1	28826511	...	19	46	71	6.591155e-07	1.595753e-06	2.463011e-06	-5.608534e+00	...	4	28770325	...	1.390321e-07
TCGA-BH-A28O-01A-11D-A228-09	24	19	5	12	2.083333e-01	exome+100bp flanks	2	35956486	...	5	11	18	1.390570e-07	3.059253e-07	5.006051e-07	-6.300505e+00	...	0	32224023	...	0
TCGA-BH-A28Q-01A-11D-A16D-09	23	22	1	16	4.347826e-02	exome+100bp flanks	2	35956486	...	3	16	20	8.343418e-08	4.449823e-07	5.562279e-07	-6.254747e+00	...	0	32224023	...	0
TCGA-BH-A2L8-01A-11D-A18P-09	416	413	3	312	7.211538e-03	coding only	1	28826511	...	99	285	387	3.434339e-06	9.886732e-06	1.342514e-05	-4.872081e+00	...	2	28770325	...	6.951607e-08
TCGA-BH-A42T-01A-11D-A243-09	37	34	3	26	8.108108e-02	exome+100bp flanks	2	35956486	...	6	23	31	1.668684e-07	6.396621e-07	8.621532e-07	-6.064416e+00	...	0	32224023	...	0
TCGA-BH-A42U-01A-12D-A243-09	14	11	3	10	2.142857e-01	exome+100bp flanks	2	35956486	...	0	7	9	0	1.946798e-07	2.503025e-07	-6.601535e+00	...	0	32224023	...	0
TCGA-BH-A42V-01A-11D-A243-09	37	34	3	30	8.108108e-02	exome+100bp flanks	2	35956486	...	3	28	35	8.343418e-08	7.787190e-07	9.733988e-07	-6.011709e+00	...	1	32224023	...	3.103275e-08
TCGA-BH-A5IZ-01A-11D-A27P-09	93	80	13	63	1.397849e-01	exome+100bp flanks	2	35956486	...	15	54	79	4.171709e-07	1.501815e-06	2.197100e-06	-5.658150e+00	...	5	32224023	...	1.551637e-07
TCGA-BH-A5J0-01A-11D-A27P-09	67	61	6	51	8.955224e-02	exome+100bp flanks	2	35956486	...	10	47	63	2.781139e-07	1.307136e-06	1.752118e-06	-5.756437e+00	...	3	32224023	...	9.309825e-08
TCGA-C8-A12K-01A-21D-A10Y-09	108	108	0	83	0	coding only	1	28826511	...	25	76	105	8.672572e-07	2.636462e-06	3.642480e-06	-5.438603e+00	...	4	28770325	...	1.390321e-07
TCGA-C8-A12L-01A-11D-A10Y-09	72	71	1	59	1.388889e-02	coding only	1	28826511	...	12	53	71	4.162835e-07	1.838585e-06	2.463011e-06	-5.608534e+00	...	5	28770325	...	1.737902e-07
TCGA-C8-A12M-01A-11D-A135-09	57	57	0	46	0	coding only	1	28826511	...	10	38	52	3.469029e-07	1.318231e-06	1.803895e-06	-5.743789e+00	...	4	28770325	...	1.390321e-07
TCGA-C8-A12N-01A-11D-A10Y-09	24	24	0	17	0	exome+100bp flanks	2	35956486	...	7	14	24	1.946798e-07	3.893595e-07	6.674735e-07	-6.175566e+00	...	3	32224023	...	9.309825e-08
TCGA-C8-A12O-01A-11D-A10Y-09	30	28	2	24	6.666667e-02	exome+100bp flanks	2	35956486	...	4	23	28	1.112456e-07	6.396621e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-C8-A12P-01A-11D-A10Y-09	155	150	5	116	3.225806e-02	exome+100bp flanks	2	35956486	...	33	107	148	9.177760e-07	2.975819e-06	4.116086e-06	-5.385516e+00	...	5	32224023	...	1.551637e-07
TCGA-C8-A12Q-01A-11D-A10Y-09	100	100	0	77	0	coding only	1	28826511	...	18	72	92	6.244252e-07	2.497701e-06	3.191507e-06	-5.496004e+00	...	2	28770325	...	6.951607e-08
TCGA-C8-A12T-01A-11D-A10Y-09	154	151	3	123	1.948052e-02	coding only	1	28826511	...	26	114	142	9.019475e-07	3.954693e-06	4.926021e-06	-5.307504e+00	...	1	28770325	...	3.475804e-08
TCGA-C8-A12U-01A-11D-A10Y-09	36	36	0	29	0	exome+100bp flanks	2	35956486	...	7	24	33	1.946798e-07	6.674735e-07	9.177760e-07	-6.037263e+00	...	2	32224023	...	6.206550e-08
TCGA-C8-A12V-01A-11D-A10Y-09	15	15	0	13	0	exome+100bp flanks	2	35956486	...	2	13	15	5.562279e-08	3.615481e-07	4.171709e-07	-6.379686e+00	...	0	32224023	...	0
TCGA-C8-A12W-01A-11D-A10Y-09	47	47	0	38	0	exome+100bp flanks	2	35956486	...	8	35	46	2.224912e-07	9.733988e-07	1.279324e-06	-5.893019e+00	...	3	32224023	...	9.309825e-08
TCGA-C8-A12X-01A-11D-A10Y-09	44	43	1	33	2.272727e-02	exome+100bp flanks	2	35956486	...	9	32	42	2.503025e-07	8.899646e-07	1.168079e-06	-5.932528e+00	...	1	32224023	...	3.103275e-08
TCGA-C8-A12Y-01A-11D-A12B-09	32	30	2	22	6.250000e-02	exome+100bp flanks	2	35956486	...	8	21	32	2.224912e-07	5.840393e-07	8.899646e-07	-6.050627e+00	...	1	32224023	...	3.103275e-08
TCGA-C8-A12Z-01A-11D-A10Y-09	48	47	1	38	2.083333e-02	exome+100bp flanks	2	35956486	...	8	35	45	2.224912e-07	9.733988e-07	1.251513e-06	-5.902565e+00	...	2	32224023	...	6.206550e-08
TCGA-C8-A130-01A-31D-A10Y-09	39	37	2	26	5.128205e-02	exome+100bp flanks	2	35956486	...	11	22	34	3.059253e-07	6.118507e-07	9.455874e-07	-6.024298e+00	...	1	32224023	...	3.103275e-08
TCGA-C8-A131-01A-11D-A10Y-09	56	56	0	47	0	coding only	1	28826511	...	8	40	53	2.775223e-07	1.387612e-06	1.838585e-06	-5.735516e+00	...	5	28770325	...	1.737902e-07
TCGA-C8-A132-01A-31D-A10Y-09	50	49	1	40	2.000000e-02	coding only	1	28826511	...	9	36	48	3.122126e-07	1.248850e-06	1.665134e-06	-5.778551e+00	...	3	28770325	...	1.042741e-07
TCGA-C8-A133-01A-32D-A12B-09	23	23	0	19	0	exome+100bp flanks	2	35956486	...	4	17	22	1.112456e-07	4.727937e-07	6.118507e-07	-6.213355e+00	...	1	32224023	...	3.103275e-08
TCGA-C8-A134-01A-11D-A10Y-09	96	95	1	75	1.041667e-02	coding only	1	28826511	...	18	67	90	6.244252e-07	2.324249e-06	3.122126e-06	-5.505550e+00	...	4	28770325	...	1.390321e-07
TCGA-C8-A135-01A-11D-A10Y-09	49	49	0	39	0	exome+100bp flanks	2	35956486	...	10	33	46	2.781139e-07	9.177760e-07	1.279324e-06	-5.893019e+00	...	3	32224023	...	9.309825e-08
TCGA-C8-A137-01A-11D-A10Y-09	47	47	0	37	0	exome+100bp flanks	2	35956486	...	9	32	42	2.503025e-07	8.899646e-07	1.168079e-06	-5.932528e+00	...	1	32224023	...	3.103275e-08
TCGA-C8-A138-01A-11D-A10Y-09	50	49	1	40	2.000000e-02	coding only	1	28826511	...	9	33	49	3.122126e-07	1.144780e-06	1.699824e-06	-5.769596e+00	...	6	28770325	...	2.085482e-07
TCGA-C8-A1HE-01A-11D-A188-09	39	39	0	31	0	exome+100bp flanks	2	35956486	...	8	27	35	2.224912e-07	7.509076e-07	9.733988e-07	-6.011709e+00	...	0	32224023	...	0
TCGA-C8-A1HF-01A-11D-A135-09	33	30	3	22	9.090909e-02	exome+100bp flanks	2	35956486	...	8	20	31	2.224912e-07	5.562279e-07	8.621532e-07	-6.064416e+00	...	1	32224023	...	3.103275e-08
TCGA-C8-A1HG-01A-11D-A135-09	45	45	0	28	0	exome+100bp flanks	2	35956486	...	16	24	43	4.449823e-07	6.674735e-07	1.195890e-06	-5.922309e+00	...	3	32224023	...	9.309825e-08
TCGA-C8-A1HI-01A-11D-A135-09	37	36	1	27	2.702703e-02	exome+100bp flanks	2	35956486	...	9	23	35	2.503025e-07	6.396621e-07	9.733988e-07	-6.011709e+00	...	2	32224023	...	6.206550e-08
TCGA-C8-A1HJ-01A-11D-A13L-09	117	115	2	92	1.709402e-02	coding only	1	28826511	...	21	75	108	7.284961e-07	2.601772e-06	3.746551e-06	-5.426368e+00	...	12	28770325	...	4.170964e-07
TCGA-C8-A1HK-01A-21D-A13L-09	50	49	1	40	2.000000e-02	coding only	1	28826511	...	9	38	49	3.122126e-07	1.318231e-06	1.699824e-06	-5.769596e+00	...	2	28770325	...	6.951607e-08
TCGA-C8-A1HL-01A-11D-A135-09	29	29	0	23	0	exome+100bp flanks	2	35956486	...	5	20	27	1.390570e-07	5.562279e-07	7.509076e-07	-6.124413e+00	...	2	32224023	...	6.206550e-08
TCGA-C8-A1HM-01A-12D-A135-09	300	295	5	239	1.666667e-02	coding only	1	28826511	...	50	224	279	1.734514e-06	7.770625e-06	9.678591e-06	-5.014188e+00	...	3	28770325	...	1.042741e-07
TCGA-C8-A1HN-01A-11D-A135-09	49	49	0	37	0	exome+100bp flanks	2	35956486	...	10	29	44	2.781139e-07	8.065304e-07	1.223701e-06	-5.912325e+00	...	5	32224023	...	1.551637e-07
TCGA-C8-A1HO-01A-11D-A13L-09	26	26	0	18	0	exome+100bp flanks	2	35956486	...	7	16	25	1.946798e-07	4.449823e-07	6.952849e-07	-6.157837e+00	...	2	32224023	...	6.206550e-08
TCGA-C8-A26V-01A-11D-A16D-09	75	74	1	57	1.333333e-02	coding only	1	28826511	...	16	54	71	5.550446e-07	1.873276e-06	2.463011e-06	-5.608534e+00	...	1	28770325	...	3.475804e-08
TCGA-C8-A26W-01A-11D-A16D-09	50	50	0	37	0	coding only	1	28826511	...	12	35	48	4.162835e-07	1.214160e-06	1.665134e-06	-5.778551e+00	...	1	28770325	...	3.475804e-08
TCGA-C8-A26X-01A-31D-A16D-09	45	44	1	39	2.222222e-02	exome+100bp flanks	2	35956486	...	5	32	43	1.390570e-07	8.899646e-07	1.195890e-06	-5.922309e+00	...	6	32224023	...	1.861965e-07
TCGA-C8-A26Y-01A-11D-A16D-09	695	684	11	534	1.582734e-02	coding only	1	28826511	...	138	495	649	4.787260e-06	1.717169e-05	2.251400e-05	-4.647547e+00	...	13	28770325	...	4.518545e-07
TCGA-C8-A26Z-01A-11D-A16D-09	42	42	0	36	0	exome+100bp flanks	2	35956486	...	5	32	40	1.390570e-07	8.899646e-07	1.112456e-06	-5.953717e+00	...	3	32224023	...	9.309825e-08
TCGA-C8-A273-01A-11D-A16D-09	18	18	0	12	0	exome+100bp flanks	2	35956486	...	6	11	18	1.668684e-07	3.059253e-07	5.006051e-07	-6.300505e+00	...	1	32224023	...	3.103275e-08
TCGA-C8-A274-01A-11D-A16D-09	192	187	5	143	2.604167e-02	coding only	1	28826511	...	41	132	181	1.422302e-06	4.579118e-06	6.278942e-06	-5.202114e+00	...	7	28770325	...	2.433063e-07
TCGA-C8-A275-01A-21D-A16D-09	121	120	1	92	8.264463e-03	coding only	1	28826511	...	28	81	112	9.713281e-07	2.809913e-06	3.885312e-06	-5.410574e+00	...	2	28770325	...	6.951607e-08
TCGA-C8-A278-01A-11D-A167-09	27	27	0	24	0	exome+100bp flanks	2	35956486	...	3	23	26	8.343418e-08	6.396621e-07	7.230962e-07	-6.140804e+00	...	0	32224023	...	0
TCGA-C8-A27A-01A-11D-A167-09	24	23	1	18	4.166667e-02	exome+100bp flanks	2	35956486	...	5	17	22	1.390570e-07	4.727937e-07	6.118507e-07	-6.213355e+00	...	0	32224023	...	0
TCGA-C8-A27B-01A-11D-A167-09	138	136	2	114	1.449275e-02	coding only	1	28826511	...	17	105	126	5.897349e-07	3.642480e-06	4.370976e-06	-5.359422e+00	...	3	28770325	...	1.042741e-07
TCGA-C8-A3M7-01A-12D-A21Q-09	179	155	24	116	1.340782e-01	exome+100bp flanks	2	35956486	...	38	113	166	1.056833e-06	3.142688e-06	4.616691e-06	-5.335669e+00	...	2	32224023	...	6.206550e-08
TCGA-C8-A3M8-01A-11D-A20S-09	60	50	10	41	1.666667e-01	exome+100bp flanks	2	35956486	...	8	35	52	2.224912e-07	9.733988e-07	1.446192e-06	-5.839774e+00	...	5	32224023	...	1.551637e-07
TCGA-D8-A13Y-01A-11D-A10Y-09	67	66	1	52	1.492537e-02	coding only	1	28826511	...	14	49	67	4.856640e-07	1.699824e-06	2.324249e-06	-5.633717e+00	...	3	28770325	...	1.042741e-07
TCGA-D8-A13Z-01A-11D-A10Y-09	62	62	0	54	0	coding only	1	28826511	...	7	49	58	2.428320e-07	1.699824e-06	2.012037e-06	-5.696364e+00	...	2	28770325	...	6.951607e-08
TCGA-D8-A140-01A-11D-A10Y-09	91	87	4	67	4.395604e-02	exome+100bp flanks	2	35956486	...	19	58	84	5.284165e-07	1.613061e-06	2.336157e-06	-5.631498e+00	...	6	32224023	...	1.861965e-07
TCGA-D8-A141-01A-11D-A10Y-09	17	16	1	13	5.882353e-02	exome+100bp flanks	2	35956486	...	3	10	15	8.343418e-08	2.781139e-07	4.171709e-07	-6.379686e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A142-01A-11D-A10Y-09	65	64	1	45	1.538462e-02	coding only	1	28826511	...	18	43	62	6.244252e-07	1.491682e-06	2.150798e-06	-5.667400e+00	...	1	28770325	...	3.475804e-08
TCGA-D8-A143-01A-11D-A10Y-09	42	42	0	36	0	exome+100bp flanks	2	35956486	...	5	30	40	1.390570e-07	8.343418e-07	1.112456e-06	-5.953717e+00	...	5	32224023	...	1.551637e-07
TCGA-D8-A145-01A-11D-A10Y-09	27	26	1	19	3.703704e-02	exome+100bp flanks	2	35956486	...	7	16	27	1.946798e-07	4.449823e-07	7.509076e-07	-6.124413e+00	...	3	32224023	...	9.309825e-08
TCGA-D8-A146-01A-31D-A10Y-09	30	30	0	26	0	exome+100bp flanks	2	35956486	...	4	23	28	1.112456e-07	6.396621e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A147-01A-11D-A10Y-09	120	119	1	96	8.333333e-03	coding only	1	28826511	...	21	86	110	7.284961e-07	2.983365e-06	3.815932e-06	-5.418399e+00	...	3	28770325	...	1.042741e-07
TCGA-D8-A1J8-01A-11D-A13L-09	730	724	6	576	8.219178e-03	coding only	1	28826511	...	142	498	679	4.926021e-06	1.727576e-05	2.355471e-05	-4.627922e+00	...	38	28770325	...	1.320805e-06
TCGA-D8-A1J9-01A-11D-A13L-09	168	165	3	120	1.785714e-02	coding only	1	28826511	...	43	111	156	1.491682e-06	3.850622e-06	5.411685e-06	-5.266667e+00	...	1	28770325	...	3.475804e-08
TCGA-D8-A1JA-01A-11D-A13L-09	943	923	20	728	2.120891e-02	coding only	1	28826511	...	188	680	886	6.521774e-06	2.358940e-05	3.073560e-05	-4.512358e+00	...	10	28770325	...	3.475804e-07
TCGA-D8-A1JB-01A-11D-A13L-09	26	25	1	21	3.846154e-02	exome+100bp flanks	2	35956486	...	3	20	23	8.343418e-08	5.562279e-07	6.396621e-07	-6.194049e+00	...	0	32224023	...	0
TCGA-D8-A1JC-01A-11D-A13L-09	82	78	4	60	4.878049e-02	exome+100bp flanks	2	35956486	...	15	55	71	4.171709e-07	1.529627e-06	1.974609e-06	-5.704519e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A1JD-01A-11D-A13L-09	79	78	1	66	1.265823e-02	coding only	1	28826511	...	10	59	72	3.469029e-07	2.046727e-06	2.497701e-06	-5.602460e+00	...	3	28770325	...	1.042741e-07
TCGA-D8-A1JE-01A-11D-A13L-09	34	33	1	29	2.941176e-02	exome+100bp flanks	2	35956486	...	2	26	29	5.562279e-08	7.230962e-07	8.065304e-07	-6.093379e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A1JF-01A-11D-A13L-09	44	43	1	36	2.272727e-02	exome+100bp flanks	2	35956486	...	7	27	40	1.946798e-07	7.509076e-07	1.112456e-06	-5.953717e+00	...	6	32224023	...	1.861965e-07
TCGA-D8-A1JG-01B-11D-A13L-09	111	109	2	84	1.801802e-02	coding only	1	28826511	...	24	77	104	8.325669e-07	2.671152e-06	3.607790e-06	-5.442759e+00	...	3	28770325	...	1.042741e-07
TCGA-D8-A1JH-01A-11D-A188-09	19	18	1	15	5.263158e-02	exome+100bp flanks	2	35956486	...	3	13	18	8.343418e-08	3.615481e-07	5.006051e-07	-6.300505e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A1JI-01A-11D-A13L-09	35	34	1	25	2.857143e-02	exome+100bp flanks	2	35956486	...	9	21	34	2.503025e-07	5.840393e-07	9.455874e-07	-6.024298e+00	...	3	32224023	...	9.309825e-08
TCGA-D8-A1JJ-01A-31D-A14K-09	72	69	3	49	4.166667e-02	exome+100bp flanks	2	35956486	...	20	41	61	5.562279e-07	1.140267e-06	1.696495e-06	-5.770447e+00	...	0	32224023	...	0
TCGA-D8-A1JK-01A-11D-A13L-09	180	175	5	136	2.777778e-02	coding only	1	28826511	...	37	112	164	1.283541e-06	3.885312e-06	5.689207e-06	-5.244948e+00	...	15	28770325	...	5.213705e-07
TCGA-D8-A1JL-01A-11D-A13L-09	107	104	3	76	2.803738e-02	coding only	1	28826511	...	23	69	94	7.978766e-07	2.393630e-06	3.260887e-06	-5.486664e+00	...	2	28770325	...	6.951607e-08
TCGA-D8-A1JM-01A-11D-A13L-09	42	42	0	28	0	exome+100bp flanks	2	35956486	...	13	24	39	3.615481e-07	6.674735e-07	1.084644e-06	-5.964713e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A1JN-01A-11D-A13L-09	172	168	4	118	2.325581e-02	coding only	1	28826511	...	48	111	162	1.665134e-06	3.850622e-06	5.619827e-06	-5.250277e+00	...	2	28770325	...	6.951607e-08
TCGA-D8-A1JP-01A-11D-A13L-09	108	106	2	84	1.851852e-02	coding only	1	28826511	...	20	76	99	6.938058e-07	2.636462e-06	3.434339e-06	-5.464157e+00	...	3	28770325	...	1.042741e-07
TCGA-D8-A1JS-01A-11D-A13L-09	21	21	0	15	0	exome+100bp flanks	2	35956486	...	5	14	20	1.390570e-07	3.893595e-07	5.562279e-07	-6.254747e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A1JT-01A-31D-A13L-09	32	32	0	25	0	exome+100bp flanks	2	35956486	...	6	20	30	1.668684e-07	5.562279e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-D8-A1JU-01A-11D-A13L-09	12	12	0	8	0	exome+100bp flanks	2	35956486	...	4	6	12	1.112456e-07	1.668684e-07	3.337367e-07	-6.476596e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A1X5-01A-11D-A14G-09	48	48	0	32	0	exome+100bp flanks	2	35956486	...	16	28	48	4.449823e-07	7.787190e-07	1.334947e-06	-5.874536e+00	...	4	32224023	...	1.241310e-07
TCGA-D8-A1X6-01A-11D-A14K-09	40	39	1	35	2.500000e-02	exome+100bp flanks	2	35956486	...	4	29	37	1.112456e-07	8.065304e-07	1.029022e-06	-5.987576e+00	...	4	32224023	...	1.241310e-07
TCGA-D8-A1X7-01A-11D-A14K-09	25	23	2	20	8.000000e-02	exome+100bp flanks	2	35956486	...	3	20	23	8.343418e-08	5.562279e-07	6.396621e-07	-6.194049e+00	...	0	32224023	...	0
TCGA-D8-A1X8-01A-11D-A14K-09	28	27	1	18	3.571429e-02	exome+100bp flanks	2	35956486	...	8	15	25	2.224912e-07	4.171709e-07	6.952849e-07	-6.157837e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A1X9-01A-12D-A159-09	89	87	2	69	2.247191e-02	coding only	1	28826511	...	17	63	83	5.897349e-07	2.185488e-06	2.879294e-06	-5.540714e+00	...	2	28770325	...	6.951607e-08
TCGA-D8-A1XA-01A-11D-A14G-09	26	26	0	22	0	exome+100bp flanks	2	35956486	...	3	16	25	8.343418e-08	4.449823e-07	6.952849e-07	-6.157837e+00	...	6	32224023	...	1.861965e-07
TCGA-D8-A1XB-01A-11D-A14G-09	29	29	0	23	0	exome+100bp flanks	2	35956486	...	5	19	25	1.390570e-07	5.284165e-07	6.952849e-07	-6.157837e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A1XC-01A-11D-A14G-09	29	29	0	24	0	exome+100bp flanks	2	35956486	...	4	23	27	1.112456e-07	6.396621e-07	7.509076e-07	-6.124413e+00	...	0	32224023	...	0
TCGA-D8-A1XF-01A-11D-A14G-09	40	39	1	30	2.500000e-02	exome+100bp flanks	2	35956486	...	9	26	39	2.503025e-07	7.230962e-07	1.084644e-06	-5.964713e+00	...	4	32224023	...	1.241310e-07
TCGA-D8-A1XG-01A-11D-A14G-09	24	24	0	18	0	exome+100bp flanks	2	35956486	...	5	15	23	1.390570e-07	4.171709e-07	6.396621e-07	-6.194049e+00	...	3	32224023	...	9.309825e-08
TCGA-D8-A1XJ-01A-11D-A14K-09	80	77	3	61	3.750000e-02	exome+100bp flanks	2	35956486	...	14	54	76	3.893595e-07	1.501815e-06	2.113666e-06	-5.674964e+00	...	6	32224023	...	1.861965e-07
TCGA-D8-A1XK-01A-21D-A14K-09	944	924	20	727	2.118644e-02	coding only	1	28826511	...	190	614	891	6.591155e-06	2.129984e-05	3.090905e-05	-4.509914e+00	...	77	28770325	...	2.676369e-06
TCGA-D8-A1XL-01A-11D-A14K-09	92	89	3	81	3.260870e-02	exome+100bp flanks	2	35956486	...	7	75	88	1.946798e-07	2.085855e-06	2.447403e-06	-5.611295e+00	...	5	32224023	...	1.551637e-07
TCGA-D8-A1XM-01A-21D-A14K-09	58	53	5	41	8.620690e-02	exome+100bp flanks	2	35956486	...	11	38	51	3.059253e-07	1.056833e-06	1.418381e-06	-5.848207e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A1XO-01A-11D-A14K-09	18	17	1	11	5.555556e-02	exome+100bp flanks	2	35956486	...	6	11	18	1.668684e-07	3.059253e-07	5.006051e-07	-6.300505e+00	...	0	32224023	...	0
TCGA-D8-A1XQ-01A-11D-A14K-09	728	720	8	569	1.098901e-02	coding only	1	28826511	...	141	456	685	4.891331e-06	1.581877e-05	2.376285e-05	-4.624102e+00	...	86	28770325	...	2.989191e-06
TCGA-D8-A1XR-01A-11D-A14K-09	24	24	0	21	0	exome+100bp flanks	2	35956486	...	2	20	23	5.562279e-08	5.562279e-07	6.396621e-07	-6.194049e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A1XS-01A-11D-A14K-09	20	20	0	11	0	exome+100bp flanks	2	35956486	...	8	9	19	2.224912e-07	2.503025e-07	5.284165e-07	-6.277024e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A1XT-01A-11D-A14K-09	46	43	3	34	6.521739e-02	exome+100bp flanks	2	35956486	...	9	31	43	2.503025e-07	8.621532e-07	1.195890e-06	-5.922309e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A1XU-01A-11D-A14K-09	27	27	0	16	0	exome+100bp flanks	2	35956486	...	8	14	23	2.224912e-07	3.893595e-07	6.396621e-07	-6.194049e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A1XV-01A-11D-A14K-09	29	29	0	23	0	exome+100bp flanks	2	35956486	...	6	20	27	1.668684e-07	5.562279e-07	7.509076e-07	-6.124413e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A1XW-01A-11D-A14K-09	89	87	2	69	2.247191e-02	coding only	1	28826511	...	18	64	85	6.244252e-07	2.220179e-06	2.948675e-06	-5.530373e+00	...	3	28770325	...	1.042741e-07
TCGA-D8-A1XY-01A-11D-A14K-09	41	40	1	30	2.439024e-02	exome+100bp flanks	2	35956486	...	10	25	37	2.781139e-07	6.952849e-07	1.029022e-06	-5.987576e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A1XZ-01A-11D-A14K-09	60	60	0	48	0	coding only	1	28826511	...	12	39	55	4.162835e-07	1.352921e-06	1.907966e-06	-5.719429e+00	...	4	28770325	...	1.390321e-07
TCGA-D8-A1Y0-01A-11D-A14K-09	67	62	5	48	7.462687e-02	exome+100bp flanks	2	35956486	...	14	45	61	3.893595e-07	1.251513e-06	1.696495e-06	-5.770447e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A1Y1-01A-21D-A14K-09	194	193	1	151	5.154639e-03	coding only	1	28826511	...	42	110	181	1.456992e-06	3.815932e-06	6.278942e-06	-5.202114e+00	...	29	28770325	...	1.007983e-06
TCGA-D8-A1Y2-01A-11D-A159-09	23	22	1	17	4.347826e-02	exome+100bp flanks	2	35956486	...	5	14	23	1.390570e-07	3.893595e-07	6.396621e-07	-6.194049e+00	...	3	32224023	...	9.309825e-08
TCGA-D8-A1Y3-01A-11D-A159-09	53	52	1	39	1.886792e-02	coding only	1	28826511	...	13	35	49	4.509738e-07	1.214160e-06	1.699824e-06	-5.769596e+00	...	1	28770325	...	3.475804e-08
TCGA-D8-A27E-01A-11D-A16D-09	8	8	0	8	0	exome+100bp flanks	2	35956486	...	0	7	7	0	1.946798e-07	1.946798e-07	-6.710679e+00	...	0	32224023	...	0
TCGA-D8-A27F-01A-11D-A16D-09	56	54	2	42	3.571429e-02	exome+100bp flanks	2	35956486	...	10	38	50	2.781139e-07	1.056833e-06	1.390570e-06	-5.856807e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A27G-01A-11D-A16D-09	977	933	44	749	4.503582e-02	exome+100bp flanks	2	35956486	...	176	706	922	4.894805e-06	1.963484e-05	2.564211e-05	-4.591046e+00	...	5	32224023	...	1.551637e-07
TCGA-D8-A27H-01A-11D-A16D-09	116	114	2	93	1.724138e-02	coding only	1	28826511	...	19	83	103	6.591155e-07	2.879294e-06	3.573100e-06	-5.446955e+00	...	1	28770325	...	3.475804e-08
TCGA-D8-A27I-01A-11D-A16D-09	33	33	0	27	0	exome+100bp flanks	2	35956486	...	6	22	32	1.668684e-07	6.118507e-07	8.899646e-07	-6.050627e+00	...	4	32224023	...	1.241310e-07
TCGA-D8-A27K-01A-11D-A16D-09	22	22	0	18	0	exome+100bp flanks	2	35956486	...	4	14	22	1.112456e-07	3.893595e-07	6.118507e-07	-6.213355e+00	...	4	32224023	...	1.241310e-07
TCGA-D8-A27L-01A-11D-A16D-09	36	35	1	26	2.777778e-02	exome+100bp flanks	2	35956486	...	8	21	32	2.224912e-07	5.840393e-07	8.899646e-07	-6.050627e+00	...	3	32224023	...	9.309825e-08
TCGA-D8-A27M-01A-11D-A16D-09	61	57	4	46	6.557377e-02	exome+100bp flanks	2	35956486	...	10	39	52	2.781139e-07	1.084644e-06	1.446192e-06	-5.839774e+00	...	3	32224023	...	9.309825e-08
TCGA-D8-A27N-01A-11D-A16D-09	46	44	2	37	4.347826e-02	exome+100bp flanks	2	35956486	...	7	31	42	1.946798e-07	8.621532e-07	1.168079e-06	-5.932528e+00	...	4	32224023	...	1.241310e-07
TCGA-D8-A27P-01A-11D-A16D-09	24	23	1	17	4.166667e-02	exome+100bp flanks	2	35956486	...	6	16	24	1.668684e-07	4.449823e-07	6.674735e-07	-6.175566e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A27R-01A-11D-A16D-09	26	25	1	22	3.846154e-02	exome+100bp flanks	2	35956486	...	3	19	24	8.343418e-08	5.284165e-07	6.674735e-07	-6.175566e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A27T-01A-11D-A16D-09	22	22	0	18	0	exome+100bp flanks	2	35956486	...	4	16	22	1.112456e-07	4.449823e-07	6.118507e-07	-6.213355e+00	...	2	32224023	...	6.206550e-08
TCGA-D8-A27V-01A-12D-A17D-09	229	215	14	168	6.113537e-02	exome+100bp flanks	2	35956486	...	43	158	211	1.195890e-06	4.394200e-06	5.868204e-06	-5.231495e+00	...	1	32224023	...	3.103275e-08
TCGA-D8-A27W-01A-11D-A16D-09	20	20	0	18	0	exome+100bp flanks	2	35956486	...	2	18	20	5.562279e-08	5.006051e-07	5.562279e-07	-6.254747e+00	...	0	32224023	...	0
TCGA-D8-A3Z5-01A-41D-A243-09	30	23	7	14	2.333333e-01	exome+100bp flanks	2	35956486	...	7	8	24	1.946798e-07	2.224912e-07	6.674735e-07	-6.175566e+00	...	5	32224023	...	1.551637e-07
TCGA-D8-A3Z6-01A-11D-A23C-09	34	32	2	24	5.882353e-02	exome+100bp flanks	2	35956486	...	7	17	29	1.946798e-07	4.727937e-07	8.065304e-07	-6.093379e+00	...	4	32224023	...	1.241310e-07
TCGA-D8-A4Z1-01A-21D-A25Q-09	16	15	1	9	6.250000e-02	exome+100bp flanks	2	35956486	...	6	8	15	1.668684e-07	2.224912e-07	4.171709e-07	-6.379686e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A105-01A-11D-A10M-09	59	59	0	49	0	coding only	1	28826511	...	10	38	58	3.469029e-07	1.318231e-06	2.012037e-06	-5.696364e+00	...	10	28770325	...	3.475804e-07
TCGA-E2-A107-01A-11D-A10M-09	31	29	2	21	6.451613e-02	exome+100bp flanks	2	35956486	...	7	17	26	1.946798e-07	4.727937e-07	7.230962e-07	-6.140804e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A108-01A-13D-A10M-09	53	53	0	40	0	coding only	1	28826511	...	11	36	48	3.815932e-07	1.248850e-06	1.665134e-06	-5.778551e+00	...	1	28770325	...	3.475804e-08
TCGA-E2-A109-01A-11D-A10M-09	82	81	1	69	1.219512e-02	coding only	1	28826511	...	11	47	78	3.815932e-07	1.630444e-06	2.705843e-06	-5.567697e+00	...	20	28770325	...	6.951607e-07
TCGA-E2-A10A-01A-21D-A10Y-09	20	20	0	15	0	exome+100bp flanks	2	35956486	...	5	11	20	1.390570e-07	3.059253e-07	5.562279e-07	-6.254747e+00	...	4	32224023	...	1.241310e-07
TCGA-E2-A10B-01A-11D-A10M-09	38	38	0	30	0	exome+100bp flanks	2	35956486	...	7	29	37	1.946798e-07	8.065304e-07	1.029022e-06	-5.987576e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A10C-01A-21D-A10M-09	355	352	3	274	8.450704e-03	coding only	1	28826511	...	74	256	330	2.567081e-06	8.880714e-06	1.144780e-05	-4.941278e+00	...	0	28770325	...	0
TCGA-E2-A10E-01A-21D-A10M-09	25	25	0	22	0	exome+100bp flanks	2	35956486	...	3	21	25	8.343418e-08	5.840393e-07	6.952849e-07	-6.157837e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A10F-01A-11D-A10M-09	28	26	2	21	7.142857e-02	exome+100bp flanks	2	35956486	...	5	19	25	1.390570e-07	5.284165e-07	6.952849e-07	-6.157837e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A14N-01A-31D-A135-09	57	57	0	46	0	coding only	1	28826511	...	11	45	56	3.815932e-07	1.561063e-06	1.942656e-06	-5.711604e+00	...	0	28770325	...	0
TCGA-E2-A14O-01A-31D-A10Y-09	35	34	1	32	2.857143e-02	exome+100bp flanks	2	35956486	...	2	24	30	5.562279e-08	6.674735e-07	8.343418e-07	-6.078656e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A14P-01A-31D-A12B-09	82	78	4	54	4.878049e-02	exome+100bp flanks	2	35956486	...	22	48	73	6.118507e-07	1.334947e-06	2.030232e-06	-5.692454e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A14Q-01A-11D-A12B-09	23	22	1	17	4.347826e-02	exome+100bp flanks	2	35956486	...	5	15	22	1.390570e-07	4.171709e-07	6.118507e-07	-6.213355e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A14R-01A-11D-A10Y-09	105	102	3	88	2.857143e-02	coding only	1	28826511	...	12	77	91	4.162835e-07	2.671152e-06	3.156816e-06	-5.500751e+00	...	2	28770325	...	6.951607e-08
TCGA-E2-A14S-01A-11D-A12B-09	35	32	3	25	8.571429e-02	exome+100bp flanks	2	35956486	...	6	22	30	1.668684e-07	6.118507e-07	8.343418e-07	-6.078656e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A14T-01A-11D-A10Y-09	32	32	0	26	0	exome+100bp flanks	2	35956486	...	6	19	31	1.668684e-07	5.284165e-07	8.621532e-07	-6.064416e+00	...	6	32224023	...	1.861965e-07
TCGA-E2-A14U-01A-11D-A228-09	20	16	4	11	2.000000e-01	exome+100bp flanks	2	35956486	...	5	9	16	1.390570e-07	2.503025e-07	4.449823e-07	-6.351657e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A14V-01A-11D-A12B-09	75	73	2	62	2.666667e-02	coding only	1	28826511	...	11	52	68	3.815932e-07	1.803895e-06	2.358940e-06	-5.627283e+00	...	4	28770325	...	1.390321e-07
TCGA-E2-A14W-01A-11D-A12B-09	84	83	1	68	1.190476e-02	coding only	1	28826511	...	13	53	76	4.509738e-07	1.838585e-06	2.636462e-06	-5.578978e+00	...	10	28770325	...	3.475804e-07
TCGA-E2-A14X-01A-11D-A10Y-09	24	24	0	18	0	exome+100bp flanks	2	35956486	...	6	17	24	1.668684e-07	4.727937e-07	6.674735e-07	-6.175566e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A14Y-01A-21D-A12B-09	35	33	2	26	5.714286e-02	exome+100bp flanks	2	35956486	...	7	21	33	1.946798e-07	5.840393e-07	9.177760e-07	-6.037263e+00	...	5	32224023	...	1.551637e-07
TCGA-E2-A14Z-01A-11D-A10Y-09	63	62	1	44	1.587302e-02	coding only	1	28826511	...	18	40	60	6.244252e-07	1.387612e-06	2.081417e-06	-5.681641e+00	...	2	28770325	...	6.951607e-08
TCGA-E2-A150-01A-11D-A12B-09	47	46	1	37	2.127660e-02	exome+100bp flanks	2	35956486	...	8	34	43	2.224912e-07	9.455874e-07	1.195890e-06	-5.922309e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A152-01A-11D-A12B-09	121	120	1	97	8.264463e-03	coding only	1	28826511	...	21	86	108	7.284961e-07	2.983365e-06	3.746551e-06	-5.426368e+00	...	1	28770325	...	3.475804e-08
TCGA-E2-A153-01A-12D-A12B-09	23	23	0	18	0	exome+100bp flanks	2	35956486	...	4	15	20	1.112456e-07	4.171709e-07	5.562279e-07	-6.254747e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A154-01A-11D-A10Y-09	41	41	0	33	0	exome+100bp flanks	2	35956486	...	8	29	38	2.224912e-07	8.065304e-07	1.056833e-06	-5.975994e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A155-01A-11D-A12B-09	55	54	1	40	1.818182e-02	coding only	1	28826511	...	14	34	51	4.856640e-07	1.179470e-06	1.769205e-06	-5.752222e+00	...	3	28770325	...	1.042741e-07
TCGA-E2-A156-01A-11D-A12B-09	17	17	0	17	0	exome+100bp flanks	2	35956486	...	0	11	15	0	3.059253e-07	4.171709e-07	-6.379686e+00	...	4	32224023	...	1.241310e-07
TCGA-E2-A158-01A-11D-A12B-09	87	85	2	76	2.298851e-02	coding only	1	28826511	...	9	71	82	3.122126e-07	2.463011e-06	2.844604e-06	-5.545978e+00	...	2	28770325	...	6.951607e-08
TCGA-E2-A159-01A-11D-A10Y-09	148	147	1	114	6.756757e-03	coding only	1	28826511	...	32	109	143	1.110089e-06	3.781242e-06	4.960711e-06	-5.304456e+00	...	1	28770325	...	3.475804e-08
TCGA-E2-A15A-01A-11D-A12B-09	40	38	2	36	5.000000e-02	exome+100bp flanks	2	35956486	...	2	33	37	5.562279e-08	9.177760e-07	1.029022e-06	-5.987576e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A15C-01A-31D-A12B-09	29	28	1	22	3.448276e-02	exome+100bp flanks	2	35956486	...	6	19	29	1.668684e-07	5.284165e-07	8.065304e-07	-6.093379e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A15D-01A-11D-A10Y-09	28	28	0	26	0	exome+100bp flanks	2	35956486	...	2	23	26	5.562279e-08	6.396621e-07	7.230962e-07	-6.140804e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A15E-01A-11D-A12B-09	28	28	0	25	0	exome+100bp flanks	2	35956486	...	3	22	26	8.343418e-08	6.118507e-07	7.230962e-07	-6.140804e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A15F-01A-11D-A10Y-09	22	22	0	19	0	exome+100bp flanks	2	35956486	...	3	17	22	8.343418e-08	4.727937e-07	6.118507e-07	-6.213355e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A15G-01A-11D-A12B-09	59	58	1	41	1.694915e-02	coding only	1	28826511	...	17	35	56	5.897349e-07	1.214160e-06	1.942656e-06	-5.711604e+00	...	4	28770325	...	1.390321e-07
TCGA-E2-A15H-01A-11D-A12B-09	32	31	1	27	3.125000e-02	exome+100bp flanks	2	35956486	...	4	22	30	1.112456e-07	6.118507e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-E2-A15I-01A-21D-A135-09	127	108	19	82	1.496063e-01	exome+100bp flanks	2	35956486	...	26	76	121	7.230962e-07	2.113666e-06	3.365179e-06	-5.472992e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A15J-01A-11D-A12Q-09	24	24	0	19	0	exome+100bp flanks	2	35956486	...	5	17	23	1.390570e-07	4.727937e-07	6.396621e-07	-6.194049e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A15K-01A-11D-A12Q-09	40	40	0	33	0	exome+100bp flanks	2	35956486	...	6	29	38	1.668684e-07	8.065304e-07	1.056833e-06	-5.975994e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A15L-01A-11D-A12B-09	32	31	1	29	3.125000e-02	exome+100bp flanks	2	35956486	...	2	26	30	5.562279e-08	7.230962e-07	8.343418e-07	-6.078656e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A15M-01A-11D-A12B-09	66	66	0	50	0	coding only	1	28826511	...	16	46	66	5.550446e-07	1.595753e-06	2.289559e-06	-5.640248e+00	...	4	28770325	...	1.390321e-07
TCGA-E2-A15O-01A-11D-A10Y-09	35	33	2	25	5.714286e-02	exome+100bp flanks	2	35956486	...	7	20	32	1.946798e-07	5.562279e-07	8.899646e-07	-6.050627e+00	...	5	32224023	...	1.551637e-07
TCGA-E2-A15P-01A-11D-A10Y-09	45	44	1	39	2.222222e-02	exome+100bp flanks	2	35956486	...	5	15	43	1.390570e-07	4.171709e-07	1.195890e-06	-5.922309e+00	...	23	32224023	...	7.137532e-07
TCGA-E2-A15R-01A-11D-A10Y-09	42	40	2	31	4.761905e-02	exome+100bp flanks	2	35956486	...	8	27	37	2.224912e-07	7.509076e-07	1.029022e-06	-5.987576e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A15S-01A-11D-A10Y-09	45	45	0	35	0	exome+100bp flanks	2	35956486	...	10	31	43	2.781139e-07	8.621532e-07	1.195890e-06	-5.922309e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A15T-01A-11D-A10Y-09	43	43	0	33	0	exome+100bp flanks	2	35956486	...	10	21	39	2.781139e-07	5.840393e-07	1.084644e-06	-5.964713e+00	...	8	32224023	...	2.482620e-07
TCGA-E2-A1AZ-01A-11D-A12Q-09	54	52	2	39	3.703704e-02	exome+100bp flanks	2	35956486	...	13	37	52	3.615481e-07	1.029022e-06	1.446192e-06	-5.839774e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A1B0-01A-11D-A12Q-09	40	40	0	27	0	exome+100bp flanks	2	35956486	...	12	24	38	3.337367e-07	6.674735e-07	1.056833e-06	-5.975994e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A1B1-01A-21D-A12Q-09	14	14	0	10	0	exome+100bp flanks	2	35956486	...	4	9	14	1.112456e-07	2.503025e-07	3.893595e-07	-6.409649e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A1B4-01A-11D-A12Q-09	34	31	3	29	8.823529e-02	exome+100bp flanks	2	35956486	...	2	26	31	5.562279e-08	7.230962e-07	8.621532e-07	-6.064416e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A1B5-01A-21D-A12Q-09	15	15	0	13	0	exome+100bp flanks	2	35956486	...	2	8	15	5.562279e-08	2.224912e-07	4.171709e-07	-6.379686e+00	...	5	32224023	...	1.551637e-07
TCGA-E2-A1B6-01A-31D-A12Q-09	11	10	1	8	9.090909e-02	exome+100bp flanks	2	35956486	...	1	8	9	2.781139e-08	2.224912e-07	2.503025e-07	-6.601535e+00	...	0	32224023	...	0
TCGA-E2-A1BC-01A-11D-A14G-09	34	31	3	24	8.823529e-02	exome+100bp flanks	2	35956486	...	7	18	28	1.946798e-07	5.006051e-07	7.787190e-07	-6.108619e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A1BD-01A-11D-A12Q-09	29	29	0	24	0	exome+100bp flanks	2	35956486	...	4	20	28	1.112456e-07	5.562279e-07	7.787190e-07	-6.108619e+00	...	4	32224023	...	1.241310e-07
TCGA-E2-A1IE-01A-11D-A188-09	20	18	2	17	1.000000e-01	exome+100bp flanks	2	35956486	...	1	16	17	2.781139e-08	4.449823e-07	4.727937e-07	-6.325328e+00	...	0	32224023	...	0
TCGA-E2-A1IF-01A-11D-A142-09	15	15	0	14	0	exome+100bp flanks	2	35956486	...	1	11	14	2.781139e-08	3.059253e-07	3.893595e-07	-6.409649e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A1IG-01A-11D-A142-09	41	40	1	31	2.439024e-02	exome+100bp flanks	2	35956486	...	8	23	37	2.224912e-07	6.396621e-07	1.029022e-06	-5.987576e+00	...	5	32224023	...	1.551637e-07
TCGA-E2-A1IH-01A-11D-A188-09	63	63	0	53	0	coding only	1	28826511	...	9	49	60	3.122126e-07	1.699824e-06	2.081417e-06	-5.681641e+00	...	2	28770325	...	6.951607e-08
TCGA-E2-A1II-01A-11D-A142-09	27	27	0	21	0	exome+100bp flanks	2	35956486	...	6	17	26	1.668684e-07	4.727937e-07	7.230962e-07	-6.140804e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A1IJ-01A-11D-A142-09	19	18	1	17	5.263158e-02	exome+100bp flanks	2	35956486	...	1	12	17	2.781139e-08	3.337367e-07	4.727937e-07	-6.325328e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A1IK-01A-11D-A17G-09	17	15	2	11	1.176471e-01	exome+100bp flanks	2	35956486	...	3	9	14	8.343418e-08	2.503025e-07	3.893595e-07	-6.409649e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A1IL-01A-11D-A14G-09	21	21	0	17	0	exome+100bp flanks	2	35956486	...	3	13	19	8.343418e-08	3.615481e-07	5.284165e-07	-6.277024e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A1IN-01A-11D-A13L-09	194	190	4	140	2.061856e-02	coding only	1	28826511	...	48	130	181	1.665134e-06	4.509738e-06	6.278942e-06	-5.202114e+00	...	2	28770325	...	6.951607e-08
TCGA-E2-A1IO-01A-11D-A142-09	14	14	0	13	0	exome+100bp flanks	2	35956486	...	1	11	14	2.781139e-08	3.059253e-07	3.893595e-07	-6.409649e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A1IU-01A-11D-A14G-09	24	22	2	16	8.333333e-02	exome+100bp flanks	2	35956486	...	5	11	19	1.390570e-07	3.059253e-07	5.284165e-07	-6.277024e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A1L6-01A-11D-A13L-09	19	18	1	15	5.263158e-02	exome+100bp flanks	2	35956486	...	3	13	18	8.343418e-08	3.615481e-07	5.006051e-07	-6.300505e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A1L7-01A-11D-A142-09	65	63	2	56	3.076923e-02	exome+100bp flanks	2	35956486	...	7	52	62	1.946798e-07	1.446192e-06	1.724306e-06	-5.763386e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A1L8-01A-11D-A13L-09	30	29	1	23	3.333333e-02	exome+100bp flanks	2	35956486	...	4	20	25	1.112456e-07	5.562279e-07	6.952849e-07	-6.157837e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A1L9-01A-11D-A13L-09	23	23	0	19	0	exome+100bp flanks	2	35956486	...	4	15	21	1.112456e-07	4.171709e-07	5.840393e-07	-6.233558e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A1LA-01A-11D-A142-09	84	83	1	63	1.190476e-02	coding only	1	28826511	...	20	54	78	6.938058e-07	1.873276e-06	2.705843e-06	-5.567697e+00	...	4	28770325	...	1.390321e-07
TCGA-E2-A1LB-01A-11D-A142-09	40	40	0	31	0	exome+100bp flanks	2	35956486	...	8	26	36	2.224912e-07	7.230962e-07	1.001210e-06	-5.999475e+00	...	2	32224023	...	6.206550e-08
TCGA-E2-A1LE-01A-12D-A19Y-09	82	69	13	55	1.585366e-01	exome+100bp flanks	2	35956486	...	12	49	70	3.337367e-07	1.362758e-06	1.946798e-06	-5.710679e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A1LG-01A-21D-A14K-09	127	122	5	93	3.937008e-02	exome+100bp flanks	2	35956486	...	28	87	121	7.787190e-07	2.419591e-06	3.365179e-06	-5.472992e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A1LH-01A-11D-A14G-09	152	151	1	126	6.578947e-03	coding only	1	28826511	...	25	111	144	8.672572e-07	3.850622e-06	4.995402e-06	-5.301430e+00	...	8	28770325	...	2.780643e-07
TCGA-E2-A1LI-01A-12D-A159-09	14	12	2	9	1.428571e-01	exome+100bp flanks	2	35956486	...	2	9	12	5.562279e-08	2.503025e-07	3.337367e-07	-6.476596e+00	...	0	32224023	...	0
TCGA-E2-A1LK-01A-21D-A14G-09	45	43	2	30	4.444444e-02	exome+100bp flanks	2	35956486	...	13	20	41	3.615481e-07	5.562279e-07	1.140267e-06	-5.942993e+00	...	8	32224023	...	2.482620e-07
TCGA-E2-A1LL-01A-11D-A142-09	25	24	1	19	4.000000e-02	exome+100bp flanks	2	35956486	...	4	16	21	1.112456e-07	4.449823e-07	5.840393e-07	-6.233558e+00	...	1	32224023	...	3.103275e-08
TCGA-E2-A1LS-01A-12D-A159-09	74	70	4	57	5.405405e-02	exome+100bp flanks	2	35956486	...	12	47	69	3.337367e-07	1.307136e-06	1.918986e-06	-5.716928e+00	...	9	32224023	...	2.792947e-07
TCGA-E2-A2P5-01A-11D-A19Y-09	105	92	13	71	1.238095e-01	exome+100bp flanks	2	35956486	...	20	62	94	5.562279e-07	1.724306e-06	2.614271e-06	-5.582649e+00	...	4	32224023	...	1.241310e-07
TCGA-E2-A2P6-01A-11D-A19Y-09	165	145	20	101	1.212121e-01	exome+100bp flanks	2	35956486	...	39	92	153	1.084644e-06	2.558648e-06	4.255143e-06	-5.371086e+00	...	6	32224023	...	1.861965e-07
TCGA-E2-A3DX-01A-21D-A20S-09	21	14	7	9	3.333333e-01	all capture (no interval list)	3	65785381	...	3	7	15	4.560284e-08	1.064066e-07	2.280142e-07	-6.642038e+00	...	1	31868074	...	3.137937e-08
TCGA-E2-A56Z-01A-12D-A29N-09	54	51	3	45	5.555556e-02	exome+100bp flanks	2	35956486	...	6	33	49	1.668684e-07	9.177760e-07	1.362758e-06	-5.865581e+00	...	9	32224023	...	2.792947e-07
TCGA-E2-A570-01A-11D-A29N-09	33	28	5	20	1.515152e-01	exome+100bp flanks	2	35956486	...	8	14	28	2.224912e-07	3.893595e-07	7.787190e-07	-6.108619e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A573-01A-11D-A29N-09	61	55	6	44	9.836066e-02	exome+100bp flanks	2	35956486	...	10	38	53	2.781139e-07	1.056833e-06	1.474004e-06	-5.831501e+00	...	3	32224023	...	9.309825e-08
TCGA-E2-A574-01A-11D-A29N-09	121	109	12	85	9.917355e-02	exome+100bp flanks	2	35956486	...	23	76	113	6.396621e-07	2.113666e-06	3.142688e-06	-5.502699e+00	...	6	32224023	...	1.861965e-07
TCGA-E9-A1N3-01A-12D-A159-09	27	25	2	22	7.407407e-02	exome+100bp flanks	2	35956486	...	3	20	25	8.343418e-08	5.562279e-07	6.952849e-07	-6.157837e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A1N4-01A-11D-A14K-09	27	26	1	17	3.703704e-02	exome+100bp flanks	2	35956486	...	8	17	25	2.224912e-07	4.727937e-07	6.952849e-07	-6.157837e+00	...	0	32224023	...	0
TCGA-E9-A1N5-01A-11D-A14G-09	30	29	1	24	3.333333e-02	exome+100bp flanks	2	35956486	...	5	24	30	1.390570e-07	6.674735e-07	8.343418e-07	-6.078656e+00	...	0	32224023	...	0
TCGA-E9-A1N8-01A-11D-A142-09	28	25	3	23	1.071429e-01	exome+100bp flanks	2	35956486	...	2	20	26	5.562279e-08	5.562279e-07	7.230962e-07	-6.140804e+00	...	3	32224023	...	9.309825e-08
TCGA-E9-A1N9-01A-11D-A14G-09	50	50	0	42	0	coding only	1	28826511	...	7	39	49	2.428320e-07	1.352921e-06	1.699824e-06	-5.769596e+00	...	3	28770325	...	1.042741e-07
TCGA-E9-A1NA-01A-11D-A142-09	92	90	2	74	2.173913e-02	coding only	1	28826511	...	16	62	88	5.550446e-07	2.150798e-06	3.052745e-06	-5.515309e+00	...	9	28770325	...	3.128223e-07
TCGA-E9-A1NC-01A-12W-A16L-09	112	111	1	100	8.928571e-03	coding only	1	28826511	...	11	39	104	3.815932e-07	1.352921e-06	3.607790e-06	-5.442759e+00	...	54	28770325	...	1.876934e-06
TCGA-E9-A1ND-01A-11D-A142-09	67	65	2	55	2.985075e-02	coding only	1	28826511	...	10	52	64	3.469029e-07	1.803895e-06	2.220179e-06	-5.653612e+00	...	2	28770325	...	6.951607e-08
TCGA-E9-A1NE-01A-21D-A14K-09	34	33	1	31	2.941176e-02	exome+100bp flanks	2	35956486	...	2	27	30	5.562279e-08	7.509076e-07	8.343418e-07	-6.078656e+00	...	1	32224023	...	3.103275e-08
TCGA-E9-A1NF-01A-11D-A14G-09	44	43	1	37	2.272727e-02	exome+100bp flanks	2	35956486	...	6	30	40	1.668684e-07	8.343418e-07	1.112456e-06	-5.953717e+00	...	4	32224023	...	1.241310e-07
TCGA-E9-A1NG-01A-21D-A14K-09	19	17	2	14	1.052632e-01	exome+100bp flanks	2	35956486	...	3	13	16	8.343418e-08	3.615481e-07	4.449823e-07	-6.351657e+00	...	0	32224023	...	0
TCGA-E9-A1NH-01A-11D-A14G-09	27	26	1	19	3.703704e-02	exome+100bp flanks	2	35956486	...	7	15	26	1.946798e-07	4.171709e-07	7.230962e-07	-6.140804e+00	...	4	32224023	...	1.241310e-07
TCGA-E9-A1NI-01A-11W-A16H-09	90	87	3	83	3.333333e-02	exome+100bp flanks	2	35956486	...	4	13	83	1.112456e-07	3.615481e-07	2.308346e-06	-5.636699e+00	...	65	32224023	...	2.017129e-06
TCGA-E9-A1QZ-01A-21D-A167-09	10	9	1	8	1.000000e-01	exome+100bp flanks	2	35956486	...	1	6	9	2.781139e-08	1.668684e-07	2.503025e-07	-6.601535e+00	...	1	32224023	...	3.103275e-08
TCGA-E9-A1R0-01A-22D-A16D-09	25	25	0	19	0	exome+100bp flanks	2	35956486	...	5	18	23	1.390570e-07	5.006051e-07	6.396621e-07	-6.194049e+00	...	0	32224023	...	0
TCGA-E9-A1R2-01A-11D-A14G-09	54	51	3	42	5.555556e-02	exome+100bp flanks	2	35956486	...	9	34	48	2.503025e-07	9.455874e-07	1.334947e-06	-5.874536e+00	...	4	32224023	...	1.241310e-07
TCGA-E9-A1R3-01A-31D-A14K-09	24	24	0	19	0	exome+100bp flanks	2	35956486	...	5	17	24	1.390570e-07	4.727937e-07	6.674735e-07	-6.175566e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A1R4-01A-21D-A14G-09	97	97	0	77	0	coding only	1	28826511	...	20	72	94	6.938058e-07	2.497701e-06	3.260887e-06	-5.486664e+00	...	2	28770325	...	6.951607e-08
TCGA-E9-A1R5-01A-11D-A14K-09	34	34	0	26	0	exome+100bp flanks	2	35956486	...	8	24	34	2.224912e-07	6.674735e-07	9.455874e-07	-6.024298e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A1R6-01A-11D-A14G-09	26	26	0	20	0	exome+100bp flanks	2	35956486	...	6	14	24	1.668684e-07	3.893595e-07	6.674735e-07	-6.175566e+00	...	4	32224023	...	1.241310e-07
TCGA-E9-A1R7-01A-11D-A14K-09	53	52	1	39	1.886792e-02	coding only	1	28826511	...	11	36	49	3.815932e-07	1.248850e-06	1.699824e-06	-5.769596e+00	...	2	28770325	...	6.951607e-08
TCGA-E9-A1RA-01A-11D-A14G-09	21	20	1	12	4.761905e-02	exome+100bp flanks	2	35956486	...	7	12	19	1.946798e-07	3.337367e-07	5.284165e-07	-6.277024e+00	...	0	32224023	...	0
TCGA-E9-A1RB-01A-11D-A17G-09	31	29	2	20	6.451613e-02	exome+100bp flanks	2	35956486	...	8	18	28	2.224912e-07	5.006051e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-E9-A1RC-01A-11D-A159-09	48	47	1	35	2.083333e-02	exome+100bp flanks	2	35956486	...	12	30	46	3.337367e-07	8.343418e-07	1.279324e-06	-5.893019e+00	...	3	32224023	...	9.309825e-08
TCGA-E9-A1RD-01A-11D-A159-09	25	25	0	19	0	exome+100bp flanks	2	35956486	...	5	17	24	1.390570e-07	4.727937e-07	6.674735e-07	-6.175566e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A1RE-01A-11D-A159-09	48	46	2	37	4.166667e-02	exome+100bp flanks	2	35956486	...	9	31	45	2.503025e-07	8.621532e-07	1.251513e-06	-5.902565e+00	...	3	32224023	...	9.309825e-08
TCGA-E9-A1RF-01A-11D-A159-09	130	128	2	104	1.538462e-02	coding only	1	28826511	...	23	92	121	7.978766e-07	3.191507e-06	4.197525e-06	-5.377007e+00	...	6	28770325	...	2.085482e-07
TCGA-E9-A1RG-01A-11D-A14G-09	38	38	0	32	0	exome+100bp flanks	2	35956486	...	6	28	35	1.668684e-07	7.787190e-07	9.733988e-07	-6.011709e+00	...	1	32224023	...	3.103275e-08
TCGA-E9-A1RH-01A-21D-A167-09	81	79	2	64	2.469136e-02	coding only	1	28826511	...	15	55	75	5.203543e-07	1.907966e-06	2.601772e-06	-5.584731e+00	...	5	28770325	...	1.737902e-07
TCGA-E9-A1RI-01A-11D-A167-09	16	16	0	8	0	exome+100bp flanks	2	35956486	...	7	6	15	1.946798e-07	1.668684e-07	4.171709e-07	-6.379686e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A226-01A-21D-A159-09	31	31	0	22	0	exome+100bp flanks	2	35956486	...	9	18	31	2.503025e-07	5.006051e-07	8.621532e-07	-6.064416e+00	...	4	32224023	...	1.241310e-07
TCGA-E9-A227-01A-11D-A159-09	14	13	1	10	7.142857e-02	exome+100bp flanks	2	35956486	...	3	8	13	8.343418e-08	2.224912e-07	3.615481e-07	-6.441834e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A228-01A-31D-A159-09	42	41	1	30	2.380952e-02	exome+100bp flanks	2	35956486	...	10	28	38	2.781139e-07	7.787190e-07	1.056833e-06	-5.975994e+00	...	0	32224023	...	0
TCGA-E9-A229-01A-31D-A17G-09	21	21	0	14	0	exome+100bp flanks	2	35956486	...	6	11	19	1.668684e-07	3.059253e-07	5.284165e-07	-6.277024e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A22A-01A-11D-A159-09	29	29	0	23	0	exome+100bp flanks	2	35956486	...	6	21	28	1.668684e-07	5.840393e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-E9-A22B-01A-11D-A159-09	52	51	1	39	1.923077e-02	coding only	1	28826511	...	11	37	48	3.815932e-07	1.283541e-06	1.665134e-06	-5.778551e+00	...	0	28770325	...	0
TCGA-E9-A22D-01A-11D-A159-09	19	19	0	14	0	exome+100bp flanks	2	35956486	...	4	11	17	1.112456e-07	3.059253e-07	4.727937e-07	-6.325328e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A22E-01A-11D-A159-09	86	85	1	68	1.162791e-02	coding only	1	28826511	...	16	58	77	5.550446e-07	2.012037e-06	2.671152e-06	-5.573301e+00	...	3	28770325	...	1.042741e-07
TCGA-E9-A22G-01A-11D-A159-09	101	98	3	77	2.970297e-02	coding only	1	28826511	...	17	65	90	5.897349e-07	2.254869e-06	3.122126e-06	-5.505550e+00	...	7	28770325	...	2.433063e-07
TCGA-E9-A22H-01A-11D-A159-09	19	19	0	18	0	exome+100bp flanks	2	35956486	...	1	12	17	2.781139e-08	3.337367e-07	4.727937e-07	-6.325328e+00	...	4	32224023	...	1.241310e-07
TCGA-E9-A243-01A-21D-A167-09	62	61	1	50	1.612903e-02	coding only	1	28826511	...	10	45	58	3.469029e-07	1.561063e-06	2.012037e-06	-5.696364e+00	...	2	28770325	...	6.951607e-08
TCGA-E9-A244-01A-11D-A167-09	87	83	4	65	4.597701e-02	exome+100bp flanks	2	35956486	...	18	55	76	5.006051e-07	1.529627e-06	2.113666e-06	-5.674964e+00	...	3	32224023	...	9.309825e-08
TCGA-E9-A245-01A-22D-A16D-09	18	18	0	12	0	exome+100bp flanks	2	35956486	...	5	9	17	1.390570e-07	2.503025e-07	4.727937e-07	-6.325328e+00	...	3	32224023	...	9.309825e-08
TCGA-E9-A247-01A-11D-A167-09	33	33	0	28	0	exome+100bp flanks	2	35956486	...	5	25	31	1.390570e-07	6.952849e-07	8.621532e-07	-6.064416e+00	...	1	32224023	...	3.103275e-08
TCGA-E9-A248-01A-11D-A167-09	16	16	0	14	0	exome+100bp flanks	2	35956486	...	2	11	15	5.562279e-08	3.059253e-07	4.171709e-07	-6.379686e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A249-01A-11D-A167-09	15	15	0	10	0	exome+100bp flanks	2	35956486	...	5	9	15	1.390570e-07	2.503025e-07	4.171709e-07	-6.379686e+00	...	1	32224023	...	3.103275e-08
TCGA-E9-A24A-01A-11D-A167-09	18	18	0	18	0	exome+100bp flanks	2	35956486	...	0	16	18	0	4.449823e-07	5.006051e-07	-6.300505e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A295-01A-11D-A16D-09	68	68	0	59	0	coding only	1	28826511	...	9	54	67	3.122126e-07	1.873276e-06	2.324249e-06	-5.633717e+00	...	4	28770325	...	1.390321e-07
TCGA-E9-A2JS-01A-11D-A17W-09	77	68	9	52	1.168831e-01	exome+100bp flanks	2	35956486	...	16	47	73	4.449823e-07	1.307136e-06	2.030232e-06	-5.692454e+00	...	4	32224023	...	1.241310e-07
TCGA-E9-A2JT-01A-22D-A18P-09	7	6	1	4	1.428571e-01	exome+100bp flanks	2	35956486	...	1	3	5	2.781139e-08	8.343418e-08	1.390570e-07	-6.856807e+00	...	0	32224023	...	0
TCGA-E9-A3HO-01A-11D-A20S-09	75	67	8	58	1.066667e-01	exome+100bp flanks	2	35956486	...	8	47	67	2.224912e-07	1.307136e-06	1.863363e-06	-5.729702e+00	...	5	32224023	...	1.551637e-07
TCGA-E9-A3Q9-01A-11D-A21Q-09	72	44	28	34	3.888889e-01	all capture (no interval list)	3	65785381	...	10	24	56	1.520095e-07	3.648227e-07	8.512530e-07	-6.069941e+00	...	7	31868074	...	2.196556e-07
TCGA-E9-A3QA-01A-61D-A228-09	68	64	4	50	5.882353e-02	exome+100bp flanks	2	35956486	...	14	46	64	3.893595e-07	1.279324e-06	1.779929e-06	-5.749597e+00	...	1	32224023	...	3.103275e-08
TCGA-E9-A3X8-01A-31D-A22X-09	20	18	2	13	1.000000e-01	exome+100bp flanks	2	35956486	...	5	11	20	1.390570e-07	3.059253e-07	5.562279e-07	-6.254747e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A54X-01A-11D-A25Q-09	39	33	6	25	1.538462e-01	exome+100bp flanks	2	35956486	...	7	17	30	1.946798e-07	4.727937e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-E9-A54Y-01A-11D-A25Q-09	51	42	9	31	1.764706e-01	exome+100bp flanks	2	35956486	...	11	24	45	3.059253e-07	6.674735e-07	1.251513e-06	-5.902565e+00	...	5	32224023	...	1.551637e-07
TCGA-E9-A5FK-01A-11D-A27P-09	18	16	2	13	1.111111e-01	exome+100bp flanks	2	35956486	...	3	9	15	8.343418e-08	2.503025e-07	4.171709e-07	-6.379686e+00	...	2	32224023	...	6.206550e-08
TCGA-E9-A5FL-01A-11D-A27P-09	98	87	11	71	1.122449e-01	exome+100bp flanks	2	35956486	...	16	65	91	4.449823e-07	1.807741e-06	2.530837e-06	-5.596736e+00	...	3	32224023	...	9.309825e-08
TCGA-E9-A5UO-01A-11D-A28B-09	38	33	5	27	1.315789e-01	exome+100bp flanks	2	35956486	...	5	19	34	1.390570e-07	5.284165e-07	9.455874e-07	-6.024298e+00	...	7	32224023	...	2.172292e-07
TCGA-E9-A5UP-01A-11D-A28B-09	39	30	9	24	2.307692e-01	exome+100bp flanks	2	35956486	...	5	17	31	1.390570e-07	4.727937e-07	8.621532e-07	-6.064416e+00	...	3	32224023	...	9.309825e-08
TCGA-EW-A1IW-01A-11D-A13L-09	82	82	0	63	0	coding only	1	28826511	...	18	56	78	6.244252e-07	1.942656e-06	2.705843e-06	-5.567697e+00	...	4	28770325	...	1.390321e-07
TCGA-EW-A1IX-01A-12D-A142-09	22	21	1	18	4.545455e-02	exome+100bp flanks	2	35956486	...	2	11	17	5.562279e-08	3.059253e-07	4.727937e-07	-6.325328e+00	...	4	32224023	...	1.241310e-07
TCGA-EW-A1IY-01A-11D-A188-09	26	26	0	18	0	exome+100bp flanks	2	35956486	...	8	16	25	2.224912e-07	4.449823e-07	6.952849e-07	-6.157837e+00	...	1	32224023	...	3.103275e-08
TCGA-EW-A1IZ-01A-11D-A188-09	321	317	4	240	1.246106e-02	coding only	1	28826511	...	74	195	293	2.567081e-06	6.764606e-06	1.016425e-05	-4.992924e+00	...	23	28770325	...	7.994348e-07
TCGA-EW-A1J1-01A-11D-A188-09	21	21	0	14	0	exome+100bp flanks	2	35956486	...	6	12	19	1.668684e-07	3.337367e-07	5.284165e-07	-6.277024e+00	...	1	32224023	...	3.103275e-08
TCGA-EW-A1J2-01A-21D-A13L-09	29	28	1	22	3.448276e-02	exome+100bp flanks	2	35956486	...	6	21	28	1.668684e-07	5.840393e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-EW-A1J3-01A-11D-A13L-09	27	26	1	21	3.703704e-02	exome+100bp flanks	2	35956486	...	5	19	25	1.390570e-07	5.284165e-07	6.952849e-07	-6.157837e+00	...	1	32224023	...	3.103275e-08
TCGA-EW-A1J5-01A-11D-A13L-09	413	407	6	310	1.452785e-02	coding only	1	28826511	...	92	291	388	3.191507e-06	1.009487e-05	1.345983e-05	-4.870960e+00	...	2	28770325	...	6.951607e-08
TCGA-EW-A1J6-01A-11D-A188-09	43	43	0	27	0	exome+100bp flanks	2	35956486	...	16	23	42	4.449823e-07	6.396621e-07	1.168079e-06	-5.932528e+00	...	3	32224023	...	9.309825e-08
TCGA-EW-A1OV-01A-11D-A142-09	92	92	0	71	0	coding only	1	28826511	...	20	66	87	6.938058e-07	2.289559e-06	3.018055e-06	-5.520273e+00	...	1	28770325	...	3.475804e-08
TCGA-EW-A1OX-01A-11D-A142-09	24	23	1	15	4.166667e-02	exome+100bp flanks	2	35956486	...	6	7	19	1.668684e-07	1.946798e-07	5.284165e-07	-6.277024e+00	...	6	32224023	...	1.861965e-07
TCGA-EW-A1OY-01A-11D-A142-09	64	62	2	51	3.125000e-02	exome+100bp flanks	2	35956486	...	11	43	59	3.059253e-07	1.195890e-06	1.640872e-06	-5.784925e+00	...	4	32224023	...	1.241310e-07
TCGA-EW-A1OZ-01A-11D-A142-09	51	49	2	42	3.921569e-02	exome+100bp flanks	2	35956486	...	7	38	48	1.946798e-07	1.056833e-06	1.334947e-06	-5.874536e+00	...	3	32224023	...	9.309825e-08
TCGA-EW-A1P0-01A-11D-A142-09	24	24	0	19	0	exome+100bp flanks	2	35956486	...	5	14	22	1.390570e-07	3.893595e-07	6.118507e-07	-6.213355e+00	...	3	32224023	...	9.309825e-08
TCGA-EW-A1P1-01A-31D-A14G-09	3	3	0	2	0	exome+100bp flanks	2	35956486	...	1	0	1	2.781139e-08	0	2.781139e-08	-7.555777e+00	...	0	32224023	...	0
TCGA-EW-A1P3-01A-11D-A142-09	13	13	0	10	0	exome+100bp flanks	2	35956486	...	3	7	12	8.343418e-08	1.946798e-07	3.337367e-07	-6.476596e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A1P4-01A-21D-A142-09	59	58	1	48	1.694915e-02	coding only	1	28826511	...	9	41	52	3.122126e-07	1.422302e-06	1.803895e-06	-5.743789e+00	...	2	28770325	...	6.951607e-08
TCGA-EW-A1P5-01A-11D-A142-09	18	17	1	12	5.555556e-02	exome+100bp flanks	2	35956486	...	5	10	17	1.390570e-07	2.781139e-07	4.727937e-07	-6.325328e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A1P6-01A-11D-A142-09	22	19	3	17	1.363636e-01	exome+100bp flanks	2	35956486	...	2	15	20	5.562279e-08	4.171709e-07	5.562279e-07	-6.254747e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A1P7-01A-21D-A142-09	8	8	0	6	0	exome+100bp flanks	2	35956486	...	2	4	7	5.562279e-08	1.112456e-07	1.946798e-07	-6.710679e+00	...	1	32224023	...	3.103275e-08
TCGA-EW-A1P8-01A-11D-A142-09	41	39	2	28	4.878049e-02	exome+100bp flanks	2	35956486	...	9	24	35	2.503025e-07	6.674735e-07	9.733988e-07	-6.011709e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A1PA-01A-11D-A142-09	35	34	1	25	2.857143e-02	exome+100bp flanks	2	35956486	...	9	23	34	2.503025e-07	6.396621e-07	9.455874e-07	-6.024298e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A1PB-01A-11D-A142-09	138	135	3	110	2.173913e-02	coding only	1	28826511	...	25	103	132	8.672572e-07	3.573100e-06	4.579118e-06	-5.339218e+00	...	4	28770325	...	1.390321e-07
TCGA-EW-A1PC-01B-11D-A21Q-09	150	131	19	101	1.266667e-01	exome+100bp flanks	2	35956486	...	27	86	125	7.509076e-07	2.391780e-06	3.476424e-06	-5.458867e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A1PD-01A-11D-A142-09	71	70	1	58	1.408451e-02	coding only	1	28826511	...	12	50	64	4.162835e-07	1.734514e-06	2.220179e-06	-5.653612e+00	...	2	28770325	...	6.951607e-08
TCGA-EW-A1PE-01A-11D-A142-09	35	31	4	25	1.142857e-01	exome+100bp flanks	2	35956486	...	6	19	30	1.668684e-07	5.284165e-07	8.343418e-07	-6.078656e+00	...	4	32224023	...	1.241310e-07
TCGA-EW-A1PG-01A-11D-A142-09	6	6	0	6	0	exome+100bp flanks	2	35956486	...	0	6	6	0	1.668684e-07	1.668684e-07	-6.777626e+00	...	0	32224023	...	0
TCGA-EW-A1PH-01A-11D-A14K-09	43	42	1	38	2.325581e-02	exome+100bp flanks	2	35956486	...	4	34	42	1.112456e-07	9.455874e-07	1.168079e-06	-5.932528e+00	...	3	32224023	...	9.309825e-08
TCGA-EW-A2FR-01A-11D-A21Q-09	55	48	7	41	1.272727e-01	exome+100bp flanks	2	35956486	...	6	38	50	1.668684e-07	1.056833e-06	1.390570e-06	-5.856807e+00	...	0	32224023	...	0
TCGA-EW-A2FS-01A-11D-A17D-09	28	28	0	19	0	exome+100bp flanks	2	35956486	...	9	15	26	2.503025e-07	4.171709e-07	7.230962e-07	-6.140804e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A2FV-01A-11D-A17D-09	22	20	2	17	9.090909e-02	exome+100bp flanks	2	35956486	...	3	15	21	8.343418e-08	4.171709e-07	5.840393e-07	-6.233558e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A2FW-01A-11D-A17D-09	20	19	1	17	5.000000e-02	exome+100bp flanks	2	35956486	...	2	15	20	5.562279e-08	4.171709e-07	5.562279e-07	-6.254747e+00	...	2	32224023	...	6.206550e-08
TCGA-EW-A3E8-01B-11D-A243-09	101	88	13	71	1.287129e-01	exome+100bp flanks	2	35956486	...	17	65	91	4.727937e-07	1.807741e-06	2.530837e-06	-5.596736e+00	...	1	32224023	...	3.103275e-08
TCGA-EW-A3U0-01A-11D-A228-09	148	132	16	103	1.081081e-01	exome+100bp flanks	2	35956486	...	29	95	133	8.065304e-07	2.642082e-06	3.698915e-06	-5.431926e+00	...	1	32224023	...	3.103275e-08
TCGA-EW-A423-01A-11D-A243-09	70	60	10	38	1.428571e-01	exome+100bp flanks	2	35956486	...	21	34	61	5.840393e-07	9.455874e-07	1.696495e-06	-5.770447e+00	...	1	32224023	...	3.103275e-08
TCGA-GI-A2C8-01A-11D-A16D-09	109	107	2	87	1.834862e-02	coding only	1	28826511	...	18	81	101	6.244252e-07	2.809913e-06	3.503719e-06	-5.455471e+00	...	2	28770325	...	6.951607e-08
TCGA-GI-A2C9-01A-11D-A21Q-09	162	139	23	108	1.419753e-01	exome+100bp flanks	2	35956486	...	30	98	147	8.343418e-07	2.725517e-06	4.088275e-06	-5.388460e+00	...	5	32224023	...	1.551637e-07
TCGA-GM-A2D9-01A-11D-A18P-09	395	391	4	307	1.012658e-02	coding only	1	28826511	...	82	290	375	2.844604e-06	1.006018e-05	1.300886e-05	-4.885761e+00	...	1	28770325	...	3.475804e-08
TCGA-GM-A2DA-01A-11D-A18P-09	33	30	3	20	9.090909e-02	exome+100bp flanks	2	35956486	...	9	16	26	2.503025e-07	4.449823e-07	7.230962e-07	-6.140804e+00	...	1	32224023	...	3.103275e-08
TCGA-GM-A2DB-01A-31D-A19Y-09	97	95	2	84	2.061856e-02	coding only	1	28826511	...	11	65	91	3.815932e-07	2.254869e-06	3.156816e-06	-5.500751e+00	...	14	28770325	...	4.866125e-07
TCGA-GM-A2DC-01A-11D-A18P-09	20	20	0	16	0	exome+100bp flanks	2	35956486	...	4	13	19	1.112456e-07	3.615481e-07	5.284165e-07	-6.277024e+00	...	2	32224023	...	6.206550e-08
TCGA-GM-A2DD-01A-11D-A17W-09	47	45	2	36	4.255319e-02	exome+100bp flanks	2	35956486	...	9	32	43	2.503025e-07	8.899646e-07	1.195890e-06	-5.922309e+00	...	2	32224023	...	6.206550e-08
TCGA-GM-A2DF-01A-11D-A17W-09	34	32	2	26	5.882353e-02	exome+100bp flanks	2	35956486	...	5	25	31	1.390570e-07	6.952849e-07	8.621532e-07	-6.064416e+00	...	1	32224023	...	3.103275e-08
TCGA-GM-A2DH-01A-11D-A17W-09	120	115	5	96	4.166667e-02	exome+100bp flanks	2	35956486	...	18	84	104	5.006051e-07	2.336157e-06	2.892385e-06	-5.538744e+00	...	2	32224023	...	6.206550e-08
TCGA-GM-A2DI-01A-31D-A18P-09	26	26	0	20	0	exome+100bp flanks	2	35956486	...	6	19	26	1.668684e-07	5.284165e-07	7.230962e-07	-6.140804e+00	...	1	32224023	...	3.103275e-08
TCGA-GM-A2DK-01A-21D-A17W-09	24	23	1	15	4.166667e-02	exome+100bp flanks	2	35956486	...	6	14	21	1.668684e-07	3.893595e-07	5.840393e-07	-6.233558e+00	...	1	32224023	...	3.103275e-08
TCGA-GM-A2DL-01A-11D-A18P-09	43	42	1	38	2.325581e-02	exome+100bp flanks	2	35956486	...	4	34	40	1.112456e-07	9.455874e-07	1.112456e-06	-5.953717e+00	...	2	32224023	...	6.206550e-08
TCGA-GM-A2DM-01A-11D-A17W-09	20	19	1	18	5.000000e-02	exome+100bp flanks	2	35956486	...	1	16	18	2.781139e-08	4.449823e-07	5.006051e-07	-6.300505e+00	...	1	32224023	...	3.103275e-08
TCGA-GM-A2DN-01A-11D-A17W-09	21	20	1	17	4.761905e-02	exome+100bp flanks	2	35956486	...	3	16	20	8.343418e-08	4.449823e-07	5.562279e-07	-6.254747e+00	...	1	32224023	...	3.103275e-08
TCGA-GM-A2DO-01A-11D-A19Y-09	93	93	0	72	0	coding only	1	28826511	...	20	69	89	6.938058e-07	2.393630e-06	3.087436e-06	-5.510402e+00	...	0	28770325	...	0
TCGA-GM-A3NW-01A-21D-A228-09	92	85	7	65	7.608696e-02	exome+100bp flanks	2	35956486	...	16	52	78	4.449823e-07	1.446192e-06	2.169289e-06	-5.663683e+00	...	8	32224023	...	2.482620e-07
TCGA-GM-A3NY-01A-11D-A21Q-09	126	75	51	57	4.047619e-01	all capture (no interval list)	3	65785381	...	15	40	82	2.280142e-07	6.080378e-07	1.246478e-06	-5.904316e+00	...	4	31868074	...	1.255175e-07
TCGA-GM-A3XG-01A-31D-A243-09	8	6	2	5	2.500000e-01	exome+100bp flanks	2	35956486	...	0	4	5	0	1.112456e-07	1.390570e-07	-6.856807e+00	...	0	32224023	...	0
TCGA-GM-A3XL-01A-11D-A22X-09	95	86	9	71	9.473684e-02	exome+100bp flanks	2	35956486	...	13	62	85	3.615481e-07	1.724306e-06	2.363968e-06	-5.626358e+00	...	2	32224023	...	6.206550e-08
TCGA-GM-A3XN-01A-12D-A22X-09	26	20	6	14	2.307692e-01	exome+100bp flanks	2	35956486	...	5	11	20	1.390570e-07	3.059253e-07	5.562279e-07	-6.254747e+00	...	1	32224023	...	3.103275e-08
TCGA-GM-A4E0-01A-12D-A25Q-09	29	25	4	20	1.379310e-01	exome+100bp flanks	2	35956486	...	4	14	23	1.112456e-07	3.893595e-07	6.396621e-07	-6.194049e+00	...	3	32224023	...	9.309825e-08
TCGA-GM-A5PV-01A-11D-A28B-09	26	22	4	18	1.538462e-01	exome+100bp flanks	2	35956486	...	4	17	23	1.112456e-07	4.727937e-07	6.396621e-07	-6.194049e+00	...	0	32224023	...	0
TCGA-GM-A5PX-01A-12D-A28B-09	33	29	4	21	1.212121e-01	exome+100bp flanks	2	35956486	...	8	18	31	2.224912e-07	5.006051e-07	8.621532e-07	-6.064416e+00	...	1	32224023	...	3.103275e-08
TCGA-HN-A2NL-01A-11D-A18P-09	72	71	1	57	1.388889e-02	coding only	1	28826511	...	13	51	67	4.509738e-07	1.769205e-06	2.324249e-06	-5.633717e+00	...	3	28770325	...	1.042741e-07
TCGA-HN-A2OB-01A-21D-A27P-09	12	11	1	10	8.333333e-02	exome+100bp flanks	2	35956486	...	1	9	12	2.781139e-08	2.503025e-07	3.337367e-07	-6.476596e+00	...	1	32224023	...	3.103275e-08
TCGA-JL-A3YW-01A-12D-A23C-09	98	83	15	68	1.530612e-01	exome+100bp flanks	2	35956486	...	15	57	87	4.171709e-07	1.585249e-06	2.419591e-06	-5.616258e+00	...	8	32224023	...	2.482620e-07
TCGA-JL-A3YX-01A-11D-A22X-09	41	35	6	29	1.463415e-01	exome+100bp flanks	2	35956486	...	6	23	36	1.668684e-07	6.396621e-07	1.001210e-06	-5.999475e+00	...	4	32224023	...	1.241310e-07
TCGA-LL-A440-01A-11D-A243-09	8	7	1	4	1.250000e-01	exome+100bp flanks	2	35956486	...	3	4	8	8.343418e-08	1.112456e-07	2.224912e-07	-6.652687e+00	...	0	32224023	...	0
TCGA-LL-A441-01A-11D-A243-09	80	72	8	51	1.000000e-01	exome+100bp flanks	2	35956486	...	17	42	68	4.727937e-07	1.168079e-06	1.891175e-06	-5.723268e+00	...	3	32224023	...	9.309825e-08
TCGA-LL-A50Y-01A-11D-A25Q-09	43	38	5	26	1.162791e-01	exome+100bp flanks	2	35956486	...	12	21	41	3.337367e-07	5.840393e-07	1.140267e-06	-5.942993e+00	...	4	32224023	...	1.241310e-07
TCGA-LL-A5YL-01A-12D-A29N-09	78	73	5	55	6.410256e-02	exome+100bp flanks	2	35956486	...	18	45	71	5.006051e-07	1.251513e-06	1.974609e-06	-5.704519e+00	...	3	32224023	...	9.309825e-08
TCGA-LL-A5YM-01A-11D-A28B-09	30	27	3	21	1.000000e-01	exome+100bp flanks	2	35956486	...	6	15	25	1.668684e-07	4.171709e-07	6.952849e-07	-6.157837e+00	...	2	32224023	...	6.206550e-08
TCGA-LL-A5YN-01A-11D-A28B-09	28	25	3	23	1.071429e-01	exome+100bp flanks	2	35956486	...	2	21	26	5.562279e-08	5.840393e-07	7.230962e-07	-6.140804e+00	...	1	32224023	...	3.103275e-08
TCGA-LL-A5YO-01A-21D-A28B-09	39	37	2	31	5.128205e-02	exome+100bp flanks	2	35956486	...	6	29	36	1.668684e-07	8.065304e-07	1.001210e-06	-5.999475e+00	...	1	32224023	...	3.103275e-08
TCGA-LL-A5YP-01A-21D-A28B-09	94	80	14	67	1.489362e-01	exome+100bp flanks	2	35956486	...	12	60	82	3.337367e-07	1.668684e-06	2.280534e-06	-5.641963e+00	...	1	32224023	...	3.103275e-08
TCGA-LQ-A4E4-01A-11D-A25Q-09	97	85	12	64	1.237113e-01	exome+100bp flanks	2	35956486	...	21	50	80	5.840393e-07	1.390570e-06	2.224912e-06	-5.652687e+00	...	2	32224023	...	6.206550e-08
TCGA-MS-A51U-01A-31D-A25Q-09	19	15	4	11	2.105263e-01	exome+100bp flanks	2	35956486	...	4	11	18	1.112456e-07	3.059253e-07	5.006051e-07	-6.300505e+00	...	0	32224023	...	0
TCGA-OK-A5Q2-01A-11D-A27P-09	32	28	4	24	1.250000e-01	exome+100bp flanks	2	35956486	...	4	22	28	1.112456e-07	6.118507e-07	7.787190e-07	-6.108619e+00	...	1	32224023	...	3.103275e-08
TCGA-OL-A5D6-01A-21D-A27P-09	42	40	2	32	4.761905e-02	exome+100bp flanks	2	35956486	...	7	29	41	1.946798e-07	8.065304e-07	1.140267e-06	-5.942993e+00	...	3	32224023	...	9.309825e-08
TCGA-OL-A5D7-01A-11D-A27P-09	59	53	6	41	1.016949e-01	exome+100bp flanks	2	35956486	...	12	38	55	3.337367e-07	1.056833e-06	1.529627e-06	-5.815415e+00	...	1	32224023	...	3.103275e-08
TCGA-OL-A5D8-01A-11D-A27P-09	35	34	1	27	2.857143e-02	exome+100bp flanks	2	35956486	...	5	20	32	1.390570e-07	5.562279e-07	8.899646e-07	-6.050627e+00	...	6	32224023	...	1.861965e-07
TCGA-OL-A5DA-01A-11D-A27P-09	65	59	6	44	9.230769e-02	exome+100bp flanks	2	35956486	...	14	39	59	3.893595e-07	1.084644e-06	1.640872e-06	-5.784925e+00	...	2	32224023	...	6.206550e-08
TCGA-OL-A5RU-01A-11D-A28B-09	29	25	4	22	1.379310e-01	exome+100bp flanks	2	35956486	...	3	19	27	8.343418e-08	5.284165e-07	7.509076e-07	-6.124413e+00	...	2	32224023	...	6.206550e-08
TCGA-OL-A5RV-01A-12D-A28B-09	17	13	4	11	2.352941e-01	exome+100bp flanks	2	35956486	...	2	10	17	5.562279e-08	2.781139e-07	4.727937e-07	-6.325328e+00	...	1	32224023	...	3.103275e-08
TCGA-OL-A5RW-01A-11D-A28B-09	172	153	19	123	1.104651e-01	exome+100bp flanks	2	35956486	...	29	115	160	8.065304e-07	3.198310e-06	4.449823e-06	-5.351657e+00	...	3	32224023	...	9.309825e-08
TCGA-OL-A5RX-01A-11D-A28B-09	30	28	2	22	6.666667e-02	exome+100bp flanks	2	35956486	...	6	19	29	1.668684e-07	5.284165e-07	8.065304e-07	-6.093379e+00	...	2	32224023	...	6.206550e-08
TCGA-OL-A5RY-01A-21D-A28B-09	13	10	3	8	2.307692e-01	exome+100bp flanks	2	35956486	...	2	7	12	5.562279e-08	1.946798e-07	3.337367e-07	-6.476596e+00	...	0	32224023	...	0
TCGA-OL-A5RZ-01A-11D-A28B-09	118	110	8	83	6.779661e-02	exome+100bp flanks	2	35956486	...	24	76	110	6.674735e-07	2.113666e-06	3.059253e-06	-5.514385e+00	...	6	32224023	...	1.861965e-07
TCGA-OL-A5S0-01A-11D-A28B-09	43	37	6	31	1.395349e-01	exome+100bp flanks	2	35956486	...	6	18	39	1.668684e-07	5.006051e-07	1.084644e-06	-5.964713e+00	...	10	32224023	...	3.103275e-07
TCGA-OL-A66H-01A-11D-A29N-09	26	25	1	19	3.846154e-02	exome+100bp flanks	2	35956486	...	6	15	24	1.668684e-07	4.171709e-07	6.674735e-07	-6.175566e+00	...	2	32224023	...	6.206550e-08
TCGA-OL-A66I-01A-21D-A29N-09	40	38	2	29	5.000000e-02	exome+100bp flanks	2	35956486	...	9	25	38	2.503025e-07	6.952849e-07	1.056833e-06	-5.975994e+00	...	3	32224023	...	9.309825e-08
TCGA-OL-A66J-01A-11D-A29N-09	62	57	5	49	8.064516e-02	exome+100bp flanks	2	35956486	...	8	42	57	2.224912e-07	1.168079e-06	1.585249e-06	-5.799902e+00	...	4	32224023	...	1.241310e-07
TCGA-OL-A66K-01A-11D-A29N-09	32	30	2	23	6.250000e-02	exome+100bp flanks	2	35956486	...	7	17	28	1.946798e-07	4.727937e-07	7.787190e-07	-6.108619e+00	...	4	32224023	...	1.241310e-07
TCGA-PE-A5DC-01A-12D-A27P-09	128	115	13	85	1.015625e-01	exome+100bp flanks	2	35956486	...	28	76	116	7.787190e-07	2.113666e-06	3.226122e-06	-5.491319e+00	...	4	32224023	...	1.241310e-07
TCGA-PE-A5DD-01A-12D-A27P-09	65	57	8	43	1.230769e-01	exome+100bp flanks	2	35956486	...	14	35	58	3.893595e-07	9.733988e-07	1.613061e-06	-5.792349e+00	...	4	32224023	...	1.241310e-07
TCGA-PE-A5DE-01A-11D-A27P-09	433	394	39	292	9.006928e-02	exome+100bp flanks	2	35956486	...	94	273	396	2.614271e-06	7.592511e-06	1.101331e-05	-4.958082e+00	...	1	32224023	...	3.103275e-08
