[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
                                                 Clinical feature                                  
Time to Death                                    "Time to Death"                                   
AGE                                              "AGE"                                             
AGE_mutation.rate                                "AGE_mutation rate"                               
PATHOLOGY.T.STAGE                                "PATHOLOGY T STAGE"                               
PATHOLOGY.N.STAGE                                "PATHOLOGY N STAGE"                               
PATHOLOGY.M.STAGE                                "PATHOLOGY M STAGE"                               
HISTOLOGICAL.TYPE                                "HISTOLOGICAL TYPE"                               
RADIATIONS.RADIATION.REGIMENINDICATION           "RADIATIONS RADIATION REGIMENINDICATION"          
NUMBERPACKYEARSSMOKED                            "NUMBERPACKYEARSSMOKED"                           
NUMBER.OF.LYMPH.NODES                            "NUMBER OF LYMPH NODES"                           
RACE                                             "RACE"                                            
WEIGHT_KG_AT_DIAGNOSIS                           "WEIGHT_KG_AT_DIAGNOSIS"                          
TUMOR_STATUS                                     "TUMOR_STATUS"                                    
NEOPLASMHISTOLOGICGRADE                          "NEOPLASMHISTOLOGICGRADE"                         
TOBACCO_SMOKING_YEAR_STOPPED                     "TOBACCO_SMOKING_YEAR_STOPPED"                    
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "TOBACCO_SMOKING_PACK_YEARS_SMOKED"               
TOBACCO_SMOKING_HISTORY                          "TOBACCO_SMOKING_HISTORY"                         
PATIENT.AGEBEGANSMOKINGINYEARS                   "PATIENT AGEBEGANSMOKINGINYEARS"                  
RADIATION_THERAPY_TYPE                           "RADIATION_THERAPY_TYPE"                          
PREGNANCIES_COUNT_TOTAL                          "PREGNANCIES_COUNT_TOTAL"                         
PREGNANCIES_COUNT_STILLBIRTH                     "PREGNANCIES_COUNT_STILLBIRTH"                    
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "PATIENT PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT"
PREGNANCIES_COUNT_LIVE_BIRTH                     "PREGNANCIES_COUNT_LIVE_BIRTH"                    
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "PATIENT PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT"
PREGNANCIES_COUNT_ECTOPIC                        "PREGNANCIES_COUNT_ECTOPIC"                       
LYMPH_NODE_LOCATION                              "LYMPH_NODE_LOCATION"                             
LOCATION_OF_POSITIVE_MARGINS                     "LOCATION_OF_POSITIVE_MARGINS"                    
MENOPAUSE_STATUS                                 "MENOPAUSE_STATUS"                                
LYMPHOVASCULAR_INVOLVEMENT                       "LYMPHOVASCULAR_INVOLVEMENT"                      
LYMPH_NODES_EXAMINED_HE_COUNT                    "LYMPH_NODES_EXAMINED_HE_COUNT"                   
LYMPH_NODES_EXAMINED                             "LYMPH_NODES_EXAMINED"                            
KERATINIZATION_SQUAMOUS_CELL                     "KERATINIZATION_SQUAMOUS_CELL"                    
INITIAL_PATHOLOGIC_DX_YEAR                       "INITIAL_PATHOLOGIC_DX_YEAR"                      
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "HISTORY_HORMONAL_CONTRACEPTIVES_USE"             
HEIGHT_CM_AT_DIAGNOSIS                           "HEIGHT_CM_AT_DIAGNOSIS"                          
CORPUS_INVOLVEMENT                               "CORPUS_INVOLVEMENT"                              
CERVIX_SUV_RESULTS                               "CERVIX_SUV_RESULTS"                              
AJCC_TUMOR_PATHOLOGIC_PT                         "AJCC_TUMOR_PATHOLOGIC_PT"                        
AGE_AT_DIAGNOSIS                                 "AGE_AT_DIAGNOSIS"                                
                                                 Statistical test            
Time to Death                                    "Cox regression test"       
AGE                                              "Spearman correlation test" 
AGE_mutation.rate                                "Linear Regression Analysis"
PATHOLOGY.T.STAGE                                "Spearman correlation test" 
PATHOLOGY.N.STAGE                                "Wilcoxon test"             
PATHOLOGY.M.STAGE                                "Wilcoxon test"             
HISTOLOGICAL.TYPE                                "Wilcoxon test"             
RADIATIONS.RADIATION.REGIMENINDICATION           "Wilcoxon test"             
NUMBERPACKYEARSSMOKED                            "Spearman correlation test" 
NUMBER.OF.LYMPH.NODES                            "Spearman correlation test" 
RACE                                             "Kruskal-Wallis test"       
WEIGHT_KG_AT_DIAGNOSIS                           "Spearman correlation test" 
TUMOR_STATUS                                     "Wilcoxon test"             
NEOPLASMHISTOLOGICGRADE                          "Kruskal-Wallis test"       
TOBACCO_SMOKING_YEAR_STOPPED                     "Spearman correlation test" 
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "Spearman correlation test" 
TOBACCO_SMOKING_HISTORY                          "Kruskal-Wallis test"       
PATIENT.AGEBEGANSMOKINGINYEARS                   "Spearman correlation test" 
RADIATION_THERAPY_TYPE                           "Kruskal-Wallis test"       
PREGNANCIES_COUNT_TOTAL                          "Spearman correlation test" 
PREGNANCIES_COUNT_STILLBIRTH                     "Spearman correlation test" 
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "Spearman correlation test" 
PREGNANCIES_COUNT_LIVE_BIRTH                     "Spearman correlation test" 
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "Spearman correlation test" 
PREGNANCIES_COUNT_ECTOPIC                        "Wilcoxon test"             
LYMPH_NODE_LOCATION                              "Kruskal-Wallis test"       
LOCATION_OF_POSITIVE_MARGINS                     "Kruskal-Wallis test"       
MENOPAUSE_STATUS                                 "Kruskal-Wallis test"       
LYMPHOVASCULAR_INVOLVEMENT                       "Wilcoxon test"             
LYMPH_NODES_EXAMINED_HE_COUNT                    "Spearman correlation test" 
LYMPH_NODES_EXAMINED                             "Spearman correlation test" 
KERATINIZATION_SQUAMOUS_CELL                     "Wilcoxon test"             
INITIAL_PATHOLOGIC_DX_YEAR                       "Spearman correlation test" 
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "Wilcoxon test"             
HEIGHT_CM_AT_DIAGNOSIS                           "Spearman correlation test" 
CORPUS_INVOLVEMENT                               "Wilcoxon test"             
CERVIX_SUV_RESULTS                               "Spearman correlation test" 
AJCC_TUMOR_PATHOLOGIC_PT                         "Kruskal-Wallis test"       
AGE_AT_DIAGNOSIS                                 "Spearman correlation test" 
                                                 Significant variables
Time to Death                                    "N=0"                
AGE                                              "N=0"                
AGE_mutation.rate                                "N=1"                
PATHOLOGY.T.STAGE                                "N=0"                
PATHOLOGY.N.STAGE                                "N=0"                
PATHOLOGY.M.STAGE                                "N=0"                
HISTOLOGICAL.TYPE                                "N=0"                
RADIATIONS.RADIATION.REGIMENINDICATION           "N=0"                
NUMBERPACKYEARSSMOKED                            "N=0"                
NUMBER.OF.LYMPH.NODES                            "N=0"                
RACE                                             "N=0"                
WEIGHT_KG_AT_DIAGNOSIS                           "N=0"                
TUMOR_STATUS                                     "N=0"                
NEOPLASMHISTOLOGICGRADE                          "N=0"                
TOBACCO_SMOKING_YEAR_STOPPED                     "N=0"                
TOBACCO_SMOKING_PACK_YEARS_SMOKED                "N=0"                
TOBACCO_SMOKING_HISTORY                          "N=0"                
PATIENT.AGEBEGANSMOKINGINYEARS                   "N=0"                
RADIATION_THERAPY_TYPE                           "N=0"                
PREGNANCIES_COUNT_TOTAL                          "N=0"                
PREGNANCIES_COUNT_STILLBIRTH                     "N=0"                
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT "N=0"                
PREGNANCIES_COUNT_LIVE_BIRTH                     "N=0"                
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT "N=0"                
PREGNANCIES_COUNT_ECTOPIC                        "N=0"                
LYMPH_NODE_LOCATION                              "N=0"                
LOCATION_OF_POSITIVE_MARGINS                     "N=2"                
MENOPAUSE_STATUS                                 "N=0"                
LYMPHOVASCULAR_INVOLVEMENT                       "N=0"                
LYMPH_NODES_EXAMINED_HE_COUNT                    "N=0"                
LYMPH_NODES_EXAMINED                             "N=0"                
KERATINIZATION_SQUAMOUS_CELL                     "N=0"                
INITIAL_PATHOLOGIC_DX_YEAR                       "N=0"                
HISTORY_HORMONAL_CONTRACEPTIVES_USE              "N=0"                
HEIGHT_CM_AT_DIAGNOSIS                           "N=0"                
CORPUS_INVOLVEMENT                               "N=0"                
CERVIX_SUV_RESULTS                               "N=0"                
AJCC_TUMOR_PATHOLOGIC_PT                         "N=0"                
AGE_AT_DIAGNOSIS                                 "N=0"                
                                                 Associated with
Time to Death                                    " "            
AGE                                              " "            
AGE_mutation.rate                                " "            
PATHOLOGY.T.STAGE                                " "            
PATHOLOGY.N.STAGE                                " "            
PATHOLOGY.M.STAGE                                " "            
HISTOLOGICAL.TYPE                                " "            
RADIATIONS.RADIATION.REGIMENINDICATION           " "            
NUMBERPACKYEARSSMOKED                            " "            
NUMBER.OF.LYMPH.NODES                            " "            
RACE                                             " "            
WEIGHT_KG_AT_DIAGNOSIS                           " "            
TUMOR_STATUS                                     " "            
NEOPLASMHISTOLOGICGRADE                          " "            
TOBACCO_SMOKING_YEAR_STOPPED                     " "            
TOBACCO_SMOKING_PACK_YEARS_SMOKED                " "            
TOBACCO_SMOKING_HISTORY                          " "            
PATIENT.AGEBEGANSMOKINGINYEARS                   " "            
RADIATION_THERAPY_TYPE                           " "            
PREGNANCIES_COUNT_TOTAL                          " "            
PREGNANCIES_COUNT_STILLBIRTH                     " "            
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT " "            
PREGNANCIES_COUNT_LIVE_BIRTH                     " "            
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "            
PREGNANCIES_COUNT_ECTOPIC                        " "            
LYMPH_NODE_LOCATION                              " "            
LOCATION_OF_POSITIVE_MARGINS                     " "            
MENOPAUSE_STATUS                                 " "            
LYMPHOVASCULAR_INVOLVEMENT                       " "            
LYMPH_NODES_EXAMINED_HE_COUNT                    " "            
LYMPH_NODES_EXAMINED                             " "            
KERATINIZATION_SQUAMOUS_CELL                     " "            
INITIAL_PATHOLOGIC_DX_YEAR                       " "            
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "            
HEIGHT_CM_AT_DIAGNOSIS                           " "            
CORPUS_INVOLVEMENT                               " "            
CERVIX_SUV_RESULTS                               " "            
AJCC_TUMOR_PATHOLOGIC_PT                         " "            
AGE_AT_DIAGNOSIS                                 " "            
                                                 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
Time to Death                                    " "                                                                                       
AGE                                              " "                                                                                       
AGE_mutation.rate                                " "                                                                                       
PATHOLOGY.T.STAGE                                " "                                                                                       
PATHOLOGY.N.STAGE                                " "                                                                                       
PATHOLOGY.M.STAGE                                " "                                                                                       
HISTOLOGICAL.TYPE                                " "                                                                                       
RADIATIONS.RADIATION.REGIMENINDICATION           " "                                                                                       
NUMBERPACKYEARSSMOKED                            " "                                                                                       
NUMBER.OF.LYMPH.NODES                            " "                                                                                       
RACE                                             " "                                                                                       
WEIGHT_KG_AT_DIAGNOSIS                           " "                                                                                       
TUMOR_STATUS                                     " "                                                                                       
NEOPLASMHISTOLOGICGRADE                          " "                                                                                       
TOBACCO_SMOKING_YEAR_STOPPED                     " "                                                                                       
TOBACCO_SMOKING_PACK_YEARS_SMOKED                " "                                                                                       
TOBACCO_SMOKING_HISTORY                          " "                                                                                       
PATIENT.AGEBEGANSMOKINGINYEARS                   " "                                                                                       
RADIATION_THERAPY_TYPE                           " "                                                                                       
PREGNANCIES_COUNT_TOTAL                          " "                                                                                       
PREGNANCIES_COUNT_STILLBIRTH                     " "                                                                                       
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT " "                                                                                       
PREGNANCIES_COUNT_LIVE_BIRTH                     " "                                                                                       
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "                                                                                       
PREGNANCIES_COUNT_ECTOPIC                        " "                                                                                       
LYMPH_NODE_LOCATION                              " "                                                                                       
LOCATION_OF_POSITIVE_MARGINS                     " "                                                                                       
MENOPAUSE_STATUS                                 " "                                                                                       
LYMPHOVASCULAR_INVOLVEMENT                       " "                                                                                       
LYMPH_NODES_EXAMINED_HE_COUNT                    " "                                                                                       
LYMPH_NODES_EXAMINED                             " "                                                                                       
KERATINIZATION_SQUAMOUS_CELL                     " "                                                                                       
INITIAL_PATHOLOGIC_DX_YEAR                       " "                                                                                       
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "                                                                                       
HEIGHT_CM_AT_DIAGNOSIS                           " "                                                                                       
CORPUS_INVOLVEMENT                               " "                                                                                       
CERVIX_SUV_RESULTS                               " "                                                                                       
AJCC_TUMOR_PATHOLOGIC_PT                         " "                                                                                       
AGE_AT_DIAGNOSIS                                 " "                                                                                       
                                                 Associated with    
Time to Death                                    " "             " "
AGE                                              " "             " "
AGE_mutation.rate                                " "             " "
PATHOLOGY.T.STAGE                                " "             " "
PATHOLOGY.N.STAGE                                " "             " "
PATHOLOGY.M.STAGE                                " "             " "
HISTOLOGICAL.TYPE                                " "             " "
RADIATIONS.RADIATION.REGIMENINDICATION           " "             " "
NUMBERPACKYEARSSMOKED                            " "             " "
NUMBER.OF.LYMPH.NODES                            " "             " "
RACE                                             " "             " "
WEIGHT_KG_AT_DIAGNOSIS                           " "             " "
TUMOR_STATUS                                     " "             " "
NEOPLASMHISTOLOGICGRADE                          " "             " "
TOBACCO_SMOKING_YEAR_STOPPED                     " "             " "
TOBACCO_SMOKING_PACK_YEARS_SMOKED                " "             " "
TOBACCO_SMOKING_HISTORY                          " "             " "
PATIENT.AGEBEGANSMOKINGINYEARS                   " "             " "
RADIATION_THERAPY_TYPE                           " "             " "
PREGNANCIES_COUNT_TOTAL                          " "             " "
PREGNANCIES_COUNT_STILLBIRTH                     " "             " "
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT " "             " "
PREGNANCIES_COUNT_LIVE_BIRTH                     " "             " "
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT " "             " "
PREGNANCIES_COUNT_ECTOPIC                        " "             " "
LYMPH_NODE_LOCATION                              " "             " "
LOCATION_OF_POSITIVE_MARGINS                     " "             " "
MENOPAUSE_STATUS                                 " "             " "
LYMPHOVASCULAR_INVOLVEMENT                       " "             " "
LYMPH_NODES_EXAMINED_HE_COUNT                    " "             " "
LYMPH_NODES_EXAMINED                             " "             " "
KERATINIZATION_SQUAMOUS_CELL                     " "             " "
INITIAL_PATHOLOGIC_DX_YEAR                       " "             " "
HISTORY_HORMONAL_CONTRACEPTIVES_USE              " "             " "
HEIGHT_CM_AT_DIAGNOSIS                           " "             " "
CORPUS_INVOLVEMENT                               " "             " "
CERVIX_SUV_RESULTS                               " "             " "
AJCC_TUMOR_PATHOLOGIC_PT                         " "             " "
AGE_AT_DIAGNOSIS                                 " "             " "
