[1] "libdir: /xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/ClinicalAnalysisAllGenes_new/broadinstitute.org/cancer.genome.analysis/00333/58/"
[1] "terrence_modification_tag: TRUE"
[1] "op: MUTATION_RATE"
[1] "dfn: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/CESC-TP/5093486/CESC-TP.patients.counts_and_rates.txt"
[1] "cfn: /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/10005797/CESC-TP.merged_data.txt"
[1] "gv: ALL"
[1] "gfn: "
[1] "sfn: "
[1] "fv: ALL"
[1] "ofn: "
[1] "dx: "
[1] "cfn"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/10005797/CESC-TP.merged_data.txt"
[1] "ok3"

nSamples in clinical file=200, in expression file=39, common to both=38
Number of genes in original expression dataset=2
[1] "ALL"
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                                    
 [2] "VITALSTATUS"                                     
 [3] "DAYSTODEATH"                                     
 [4] "DAYSTOLASTFOLLOWUP"                              
 [5] "PRIMARYSITEOFDESEASE"                            
 [6] "NEOPLASM.DISEASESTAGE"                           
 [7] "PATHOLOGY.T.STAGE"                               
 [8] "PATHOLOGY.N.STAGE"                               
 [9] "PATHOLOGY.M.STAGE"                               
[10] "DCCUPLOADDATE"                                   
[11] "GENDER"                                          
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"                
[13] "HISTOLOGICALTYPE"                                
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"          
[15] "NUMBERPACKYEARSSMOKED"                           
[16] "NUMBER.OF.LYMPH.NODES"                           
[17] "RACE"                                            
[18] "ETHNICITY"                                       
[19] "BATCHNUMBER"                                     
[20] "WEIGHT_KG_AT_DIAGNOSIS"                          
[21] "TUMOR_STATUS"                                    
[22] "TUMOR_SAMPLE_PROCUREMENT_COUNTRY"                
[23] "NEOPLASMHISTOLOGICGRADE"                         
[24] "TOBACCO_SMOKING_YEAR_STOPPED"                    
[25] "TOBACCO_SMOKING_PACK_YEARS_SMOKED"               
[26] "TOBACCO_SMOKING_HISTORY"                         
[27] "PATIENT.AGEBEGANSMOKINGINYEARS"                  
[28] "RADIATION_TREATMENT_ADJUVANT"                    
[29] "RADIATION_THERAPY_TYPE"                          
[30] "RADIATION_THERAPY_STATUS"                        
[31] "RADIATION_ADJUVANT_UNITS"                        
[32] "PREGNANCIES_COUNT_TOTAL"                         
[33] "PREGNANCIES_COUNT_STILLBIRTH"                    
[34] "PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT"
[35] "PREGNANCIES_COUNT_LIVE_BIRTH"                    
[36] "PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT"
[37] "PREGNANCIES_COUNT_ECTOPIC"                       
[38] "PATIENT.CERVICALCARCINOMAPELVICEXTENSIONTEXT"    
[39] "LYMPH_NODE_LOCATION"                             
[40] "LOCATION_OF_POSITIVE_MARGINS"                    
[41] "MENOPAUSE_STATUS"                                
[42] "LYMPHOVASCULAR_INVOLVEMENT"                      
[43] "LYMPH_NODES_EXAMINED_HE_COUNT"                   
[44] "LYMPH_NODES_EXAMINED"                            
[45] "KERATINIZATION_SQUAMOUS_CELL"                    
[46] "INITIAL_PATHOLOGIC_DX_YEAR"                      
[47] "HYSTERECTOMY_TYPE"                               
[48] "HISTORY_HORMONAL_CONTRACEPTIVES_USE"             
[49] "HEIGHT_CM_AT_DIAGNOSIS"                          
[50] "FEDPET_OR_CT_RESULTS"                            
[51] "CORPUS_INVOLVEMENT"                              
[52] "CHEMO_CONCURRENT_TYPE"                           
[53] "CERVIX_SUV_RESULTS"                              
[54] "CAUSE_OF_DEATH"                                  
[55] "AJCC_TUMOR_PATHOLOGIC_PT"                        
[56] "AGE_AT_DIAGNOSIS"                                

Input Data has 56 rows and 38 columns.

[1] "Batch" "19"   
[1] "Last Follow UP"
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-BI-A20A TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF 
        1505         1735          720           NA           NA           NA 
TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN 
        1112         4385         5385         5271           NA           NA 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1ME 
          NA           NA         1409          919           NA         1756 
TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN 
        1617           NA           NA           NA           NA           NA 
TCGA-C5-A1MP TCGA-C5-A1MQ TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
         109         1031         2669         1791           NA           81 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A1OC TCGA-DS-A1OD TCGA-EA-A1QT TCGA-EX-A1H5 
        3589         3609          376         3874          376          619 
TCGA-FU-A23K TCGA-FU-A23L 
          37          725 
Variable 1:'AGE':	nDistinctValues=29,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=23,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NUMBERPACKYEARSSMOKED':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'RACE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'ETHNICITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'BATCH.NUMBER':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'WEIGHT_KG_AT_DIAGNOSIS':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'TUMOR_STATUS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 22:'TUMOR_SAMPLE_PROCUREMENT_COUNTRY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'NEOPLASMHISTOLOGICGRADE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 24:'TOBACCO_SMOKING_YEAR_STOPPED':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 25:'TOBACCO_SMOKING_PACK_YEARS_SMOKED':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 26:'TOBACCO_SMOKING_HISTORY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 27:'PATIENT.AGEBEGANSMOKINGINYEARS':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 28:'RADIATION_TREATMENT_ADJUVANT':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 29:'RADIATION_THERAPY_TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 30:'RADIATION_THERAPY_STATUS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 31:'RADIATION_ADJUVANT_UNITS':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 32:'PREGNANCIES_COUNT_TOTAL':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 33:'PREGNANCIES_COUNT_STILLBIRTH':	nDistinctValues=3,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 34:'PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT':	nDistinctValues=3,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 35:'PREGNANCIES_COUNT_LIVE_BIRTH':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 36:'PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 37:'PREGNANCIES_COUNT_ECTOPIC':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 38:'PATIENT.CERVICALCARCINOMAPELVICEXTENSIONTEXT':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 39:'LYMPH_NODE_LOCATION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 40:'LOCATION_OF_POSITIVE_MARGINS':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 41:'MENOPAUSE_STATUS':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 42:'LYMPHOVASCULAR_INVOLVEMENT':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 43:'LYMPH_NODES_EXAMINED_HE_COUNT':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 44:'LYMPH_NODES_EXAMINED':	nDistinctValues=23,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 45:'KERATINIZATION_SQUAMOUS_CELL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 46:'INITIAL_PATHOLOGIC_DX_YEAR':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 47:'HYSTERECTOMY_TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 48:'HISTORY_HORMONAL_CONTRACEPTIVES_USE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 49:'HEIGHT_CM_AT_DIAGNOSIS':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 50:'FEDPET_OR_CT_RESULTS':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 51:'CORPUS_INVOLVEMENT':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 52:'CHEMO_CONCURRENT_TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 53:'CERVIX_SUV_RESULTS':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 54:'CAUSE_OF_DEATH':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 55:'AJCC_TUMOR_PATHOLOGIC_PT':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 56:'AGE_AT_DIAGNOSIS':	nDistinctValues=29,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                             
 [2] "PATHOLOGY.T.STAGE"                               
 [3] "PATHOLOGY.N.STAGE"                               
 [4] "PATHOLOGY.M.STAGE"                               
 [5] "HISTOLOGICAL.TYPE"                               
 [6] "RADIATIONS.RADIATION.REGIMENINDICATION"          
 [7] "NUMBERPACKYEARSSMOKED"                           
 [8] "NUMBER.OF.LYMPH.NODES"                           
 [9] "RACE"                                            
[10] "WEIGHT_KG_AT_DIAGNOSIS"                          
[11] "TUMOR_STATUS"                                    
[12] "NEOPLASMHISTOLOGICGRADE"                         
[13] "TOBACCO_SMOKING_YEAR_STOPPED"                    
[14] "TOBACCO_SMOKING_PACK_YEARS_SMOKED"               
[15] "TOBACCO_SMOKING_HISTORY"                         
[16] "PATIENT.AGEBEGANSMOKINGINYEARS"                  
[17] "RADIATION_THERAPY_TYPE"                          
[18] "PREGNANCIES_COUNT_TOTAL"                         
[19] "PREGNANCIES_COUNT_STILLBIRTH"                    
[20] "PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT"
[21] "PREGNANCIES_COUNT_LIVE_BIRTH"                    
[22] "PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT"
[23] "PREGNANCIES_COUNT_ECTOPIC"                       
[24] "LYMPH_NODE_LOCATION"                             
[25] "LOCATION_OF_POSITIVE_MARGINS"                    
[26] "MENOPAUSE_STATUS"                                
[27] "LYMPHOVASCULAR_INVOLVEMENT"                      
[28] "LYMPH_NODES_EXAMINED_HE_COUNT"                   
[29] "LYMPH_NODES_EXAMINED"                            
[30] "KERATINIZATION_SQUAMOUS_CELL"                    
[31] "INITIAL_PATHOLOGIC_DX_YEAR"                      
[32] "HISTORY_HORMONAL_CONTRACEPTIVES_USE"             
[33] "HEIGHT_CM_AT_DIAGNOSIS"                          
[34] "CORPUS_INVOLVEMENT"                              
[35] "CERVIX_SUV_RESULTS"                              
[36] "AJCC_TUMOR_PATHOLOGIC_PT"                        
[37] "AGE_AT_DIAGNOSIS"                                
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 38 columns, 1 survival variables, and 37 non-survival variables.
[1] "changed to 38 non-survival variables adding another age variable for linear regression analysis on mutaion rate."
                              D                 
            "D" "Time to Death"         "Month" 
AGE, nv=29, binary=FALSE, numeric=TRUE
AGE_mutation.rate, nv=29, binary=FALSE, numeric=TRUE
$MUTATIONRATE_NONSYNONYMOUS

Call:
lm(formula = as.numeric(i) ~ vv)

Residuals:
       Min         1Q     Median         3Q        Max 
-6.292e-06 -3.154e-06 -1.781e-06  7.280e-07  3.432e-05 

Coefficients:
              Estimate Std. Error t value Pr(>|t|)  
(Intercept) -2.586e-06  4.064e-06  -0.636   0.5287  
vv           1.698e-07  8.317e-08   2.042   0.0485 *
---
Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 

Residual standard error: 6.951e-06 on 36 degrees of freedom
Multiple R-squared: 0.1038,	Adjusted R-squared: 0.0789 
F-statistic: 4.169 on 1 and 36 DF,  p-value: 0.04854 


$MUTATIONRATE_SILENT

Call:
lm(formula = as.numeric(i) ~ vv)

Residuals:
       Min         1Q     Median         3Q        Max 
-2.634e-06 -1.376e-06 -7.359e-07  3.060e-08  1.117e-05 

Coefficients:
              Estimate Std. Error t value Pr(>|t|)
(Intercept) -5.457e-07  1.641e-06  -0.333    0.741
vv           5.621e-08  3.358e-08   1.674    0.103

Residual standard error: 2.806e-06 on 36 degrees of freedom
Multiple R-squared: 0.07222,	Adjusted R-squared: 0.04644 
F-statistic: 2.802 on 1 and 36 DF,  p-value: 0.1028 


PATHOLOGY.T.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "PATHOLOGY.T.STAGE"
[1] "num to class table"
vv1
 1  2  3 
24  6  1 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=10, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=7, binary=FALSE, numeric=TRUE
RACE, nv=3, binary=FALSE, numeric=FALSE
WEIGHT_KG_AT_DIAGNOSIS, nv=22, binary=FALSE, numeric=TRUE
TUMOR_STATUS, nv=2, binary=FALSE, numeric=FALSE
NEOPLASMHISTOLOGICGRADE, nv=3, binary=FALSE, numeric=FALSE
TOBACCO_SMOKING_YEAR_STOPPED, nv=4, binary=FALSE, numeric=TRUE
[1] "TOBACCO_SMOKING_YEAR_STOPPED"
[1] "num to class table"
vv1
1988 1995 1997 2003 
   1    2    1    2 
TOBACCO_SMOKING_PACK_YEARS_SMOKED, nv=10, binary=FALSE, numeric=TRUE
TOBACCO_SMOKING_HISTORY, nv=4, binary=FALSE, numeric=FALSE
PATIENT.AGEBEGANSMOKINGINYEARS, nv=8, binary=FALSE, numeric=TRUE
RADIATION_THERAPY_TYPE, nv=3, binary=FALSE, numeric=FALSE
PREGNANCIES_COUNT_TOTAL, nv=8, binary=FALSE, numeric=TRUE
PREGNANCIES_COUNT_STILLBIRTH, nv=3, binary=FALSE, numeric=TRUE
[1] "PREGNANCIES_COUNT_STILLBIRTH"
[1] "num to class table"
vv1
 0  1  3 
28  2  1 
PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT, nv=3, binary=FALSE, numeric=TRUE
[1] "PATIENT.PATIENTPREGNANCYSPONTANEOUSABORTIONCOUNT"
[1] "num to class table"
vv1
 0  1  2 
25  5  3 
PREGNANCIES_COUNT_LIVE_BIRTH, nv=5, binary=FALSE, numeric=TRUE
[1] "PREGNANCIES_COUNT_LIVE_BIRTH"
[1] "num to class table"
vv1
 0  1  2  3  4 
 5  7 13  4  8 
PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT, nv=4, binary=FALSE, numeric=TRUE
[1] "PATIENT.PATIENTPREGNANCYTHERAPEUTICABORTIONCOUNT"
[1] "num to class table"
vv1
 0  1  2  3 
20  4  4  3 
PREGNANCIES_COUNT_ECTOPIC, nv=2, binary=TRUE, numeric=TRUE
LYMPH_NODE_LOCATION, nv=4, binary=FALSE, numeric=FALSE
LOCATION_OF_POSITIVE_MARGINS, nv=3, binary=FALSE, numeric=FALSE
MENOPAUSE_STATUS, nv=4, binary=FALSE, numeric=FALSE
LYMPHOVASCULAR_INVOLVEMENT, nv=2, binary=FALSE, numeric=FALSE
LYMPH_NODES_EXAMINED_HE_COUNT, nv=7, binary=FALSE, numeric=TRUE
LYMPH_NODES_EXAMINED, nv=23, binary=FALSE, numeric=TRUE
KERATINIZATION_SQUAMOUS_CELL, nv=2, binary=FALSE, numeric=FALSE
INITIAL_PATHOLOGIC_DX_YEAR, nv=16, binary=FALSE, numeric=TRUE
HISTORY_HORMONAL_CONTRACEPTIVES_USE, nv=2, binary=FALSE, numeric=FALSE
HEIGHT_CM_AT_DIAGNOSIS, nv=14, binary=FALSE, numeric=TRUE
CORPUS_INVOLVEMENT, nv=2, binary=FALSE, numeric=FALSE
CERVIX_SUV_RESULTS, nv=4, binary=FALSE, numeric=TRUE
[1] "CERVIX_SUV_RESULTS"
[1] "num to class table"
vv1
  8.7  9.95 16.92 17.36 
    1     1     1     1 
AJCC_TUMOR_PATHOLOGIC_PT, nv=8, binary=FALSE, numeric=FALSE
AGE_AT_DIAGNOSIS, nv=29, binary=FALSE, numeric=TRUE
[1] "saved param, results, example.expr in analysis.result.Rdata "
