[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTCESC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/10668125/CESC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/10013672/transformed.cor.cli.txt"

nPatients in clinical file=256, in cluster file=206, common to both=206
[1]  57 206
[1] "AMP PEAK  1(1P31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE 
                           67                           139 
  AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE 
                           67                           139 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          108                            98 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          108                            98 
[1] "AMP PEAK  3(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           54                           152 
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           54                           152 
[1] "AMP PEAK  4(2Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE 
                           36                           170 
  AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE 
                           36                           170 
[1] "AMP PEAK  5(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE 
                           160                             46 
  AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE 
                           160                             46 
[1] "AMP PEAK  6(3Q28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE 
                        160                          46 
  AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE 
                        160                          46 
[1] "AMP PEAK  7(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                         14                         192 
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                         14                         192 
[1] "AMP PEAK  8(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            88                            118 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            88                            118 
[1] "AMP PEAK  9(6P21.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE 
                            56                            150 
  AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE 
                            56                            150 
[1] "AMP PEAK 10(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                           34                           172 
  AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE 
                           34                           172 
[1] "AMP PEAK 11(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            84                            122 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            84                            122 
[1] "AMP PEAK 12(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           43                           163 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           43                           163 
[1] "AMP PEAK 13(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE 
                          18                          188 
  AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE 
                          18                          188 
[1] "AMP PEAK 14(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            24                            182 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            24                            182 
[1] "AMP PEAK 15(11Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE 
                            35                            171 
  AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE 
                            35                            171 
[1] "AMP PEAK 16(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE 
                            45                            161 
  AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE 
                            45                            161 
[1] "AMP PEAK 17(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            50                            156 
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            50                            156 
[1] "AMP PEAK 18(16P13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE 
                             43                             163 
  AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE 
                             43                             163 
[1] "AMP PEAK 19(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          38                          168 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          38                          168 
[1] "AMP PEAK 20(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            56                            150 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            56                            150 
[1] "AMP PEAK 21(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE 
                            62                            144 
  AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE 
                            62                            144 
[1] "AMP PEAK 22(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE 
                             92                             114 
  AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE 
                             92                             114 
[1] "AMP PEAK 23(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE 
                         50                         156 
  AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE 
                         50                         156 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            26                            180 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            26                            180 
[1] "DEL PEAK  2(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           22                           184 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           22                           184 
[1] "DEL PEAK  3(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           41                           165 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           41                           165 
[1] "DEL PEAK  4(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                           87                           119 
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                           87                           119 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           84                           122 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           84                           122 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           87                           119 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           87                           119 
[1] "DEL PEAK  7(4Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE 
                           66                           140 
  DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE 
                           66                           140 
[1] "DEL PEAK  8(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           63                           143 
  DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE 
                           63                           143 
[1] "DEL PEAK  9(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE 
                           76                           130 
  DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE 
                           76                           130 
[1] "DEL PEAK 10(5Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE 
                           52                           154 
  DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE 
                           52                           154 
[1] "DEL PEAK 11(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE 
                           53                           153 
  DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE 
                           53                           153 
[1] "DEL PEAK 12(6P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE 
                           30                           176 
  DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE 
                           30                           176 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         70                         136 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         70                         136 
[1] "DEL PEAK 14(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE 
                         45                         161 
  DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE 
                         45                         161 
[1] "DEL PEAK 15(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE 
                           73                           133 
  DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE 
                           73                           133 
[1] "DEL PEAK 16(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             60                             146 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             60                             146 
[1] "DEL PEAK 17(11P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE 
                            68                            138 
  DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE 
                            68                            138 
[1] "DEL PEAK 18(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE 
                         115                           91 
  DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE 
                         115                           91 
[1] "DEL PEAK 19(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                             73                             133 
  DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE 
                             73                             133 
[1] "DEL PEAK 20(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            81                            125 
  DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE 
                            81                            125 
[1] "DEL PEAK 21(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE 
                             32                             174 
  DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE 
                             32                             174 
[1] "DEL PEAK 22(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE 
                            40                            166 
  DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE 
                            40                            166 
[1] "DEL PEAK 23(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE 
                            41                            165 
  DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE 
                            41                            165 
[1] "DEL PEAK 24(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                            41                            165 
  DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE 
                            41                            165 
[1] "DEL PEAK 25(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE 
                          68                          138 
  DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE 
                          68                          138 
[1] "DEL PEAK 26(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                            35                            171 
  DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE 
                            35                            171 
[1] "DEL PEAK 27(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE 
                            57                            149 
  DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE 
                            57                            149 
[1] "DEL PEAK 28(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            63                            143 
  DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE 
                            63                            143 
[1] "DEL PEAK 29(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE 
                             25                             181 
  DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE 
                             25                             181 
[1] "DEL PEAK 30(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE 
                            27                            179 
  DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE 
                            27                            179 
[1] "DEL PEAK 31(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE 
                            40                            166 
  DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE 
                            40                            166 
[1] "DEL PEAK 32(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             57                             149 
  DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE 
                             57                             149 
[1] "DEL PEAK 33(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE 
                           49                           157 
  DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE 
                           49                           157 
[1] "DEL PEAK 34(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE 
                            43                            163 
  DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE 
                            43                            163 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 206 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 206 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       28     14     25
  AMP PEAK  1(1P31.3) WILD-TYPE     38     30     71
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          28                            38
  CLUS_2                          14                            30
  CLUS_3                          25                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P31.3) MUTATED       12     11     17     12     11      4
  AMP PEAK  1(1P31.3) WILD-TYPE     39     23     22     26     21      8
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          12                            39
  CLUS_2                          11                            23
  CLUS_3                          17                            22
  CLUS_4                          12                            26
  CLUS_5                          11                            21
  CLUS_6                           4                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       34     14     18
  AMP PEAK  1(1P31.3) WILD-TYPE     52     36     47
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          34                            52
  CLUS_2                          14                            36
  CLUS_3                          18                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P31.3) MUTATED       39     10      3     14
  AMP PEAK  1(1P31.3) WILD-TYPE     61     17     18     39
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          39                            61
  CLUS_2                          10                            17
  CLUS_3                           3                            18
  CLUS_4                          14                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       26     19     22
  AMP PEAK  1(1P31.3) WILD-TYPE     46     38     55
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          26                            46
  CLUS_2                          19                            38
  CLUS_3                          22                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED        9     41     17
  AMP PEAK  1(1P31.3) WILD-TYPE     33     82     24
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           9                            33
  CLUS_2                          41                            82
  CLUS_3                          17                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P31.3) MUTATED       25     20     22
  AMP PEAK  1(1P31.3) WILD-TYPE     49     42     48
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          25                            49
  CLUS_2                          20                            42
  CLUS_3                          22                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P31.3) MUTATED        5     14      6      4     12     10
  AMP PEAK  1(1P31.3) WILD-TYPE     20     24     10     28     22     18
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P31.3) MUTATED       16
  AMP PEAK  1(1P31.3) WILD-TYPE     17
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P31.3) MUTATED AMP PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           5                            20
  CLUS_2                          14                            24
  CLUS_3                           6                            10
  CLUS_4                           4                            28
  CLUS_5                          12                            22
  CLUS_6                          10                            18
  CLUS_7                          16                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       45     25     38
  AMP PEAK  2(1Q21.3) WILD-TYPE     21     19     58
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          45                            21
  CLUS_2                          25                            19
  CLUS_3                          38                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       23     16     25     19     16      9
  AMP PEAK  2(1Q21.3) WILD-TYPE     28     18     14     19     16      3
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          23                            28
  CLUS_2                          16                            18
  CLUS_3                          25                            14
  CLUS_4                          19                            19
  CLUS_5                          16                            16
  CLUS_6                           9                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       51     22     32
  AMP PEAK  2(1Q21.3) WILD-TYPE     35     28     33
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          51                            35
  CLUS_2                          22                            28
  CLUS_3                          32                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       57     15      8     25
  AMP PEAK  2(1Q21.3) WILD-TYPE     43     12     13     28
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          57                            43
  CLUS_2                          15                            12
  CLUS_3                           8                            13
  CLUS_4                          25                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       39     30     39
  AMP PEAK  2(1Q21.3) WILD-TYPE     33     27     38
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          39                            33
  CLUS_2                          30                            27
  CLUS_3                          39                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       19     66     23
  AMP PEAK  2(1Q21.3) WILD-TYPE     23     57     18
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          19                            23
  CLUS_2                          66                            57
  CLUS_3                          23                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       39     34     35
  AMP PEAK  2(1Q21.3) WILD-TYPE     35     28     35
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          39                            35
  CLUS_2                          34                            28
  CLUS_3                          35                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q21.3) MUTATED       12     24     10      9     20     14
  AMP PEAK  2(1Q21.3) WILD-TYPE     13     14      6     23     14     14
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q21.3) MUTATED       19
  AMP PEAK  2(1Q21.3) WILD-TYPE     14
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          12                            13
  CLUS_2                          24                            14
  CLUS_3                          10                             6
  CLUS_4                           9                            23
  CLUS_5                          20                            14
  CLUS_6                          14                            14
  CLUS_7                          19                            14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       22     15     17
  AMP PEAK  3(2P24.3) WILD-TYPE     44     29     79
D3V1, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          22                            44
  CLUS_2                          15                            29
  CLUS_3                          17                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.3) MUTATED       19     10      3     11      9      2
  AMP PEAK  3(2P24.3) WILD-TYPE     32     24     36     27     23     10
D3V2, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          19                            32
  CLUS_2                          10                            24
  CLUS_3                           3                            36
  CLUS_4                          11                            27
  CLUS_5                           9                            23
  CLUS_6                           2                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       17     14     21
  AMP PEAK  3(2P24.3) WILD-TYPE     69     36     44
D3V3, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          17                            69
  CLUS_2                          14                            36
  CLUS_3                          21                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED       20      6      8     18
  AMP PEAK  3(2P24.3) WILD-TYPE     80     21     13     35
D3V4, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          20                            80
  CLUS_2                           6                            21
  CLUS_3                           8                            13
  CLUS_4                          18                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       23     11     20
  AMP PEAK  3(2P24.3) WILD-TYPE     49     46     57
D3V5, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          23                            49
  CLUS_2                          11                            46
  CLUS_3                          20                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       17     32      5
  AMP PEAK  3(2P24.3) WILD-TYPE     25     91     36
D3V6, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          17                            25
  CLUS_2                          32                            91
  CLUS_3                           5                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED       22     12     20
  AMP PEAK  3(2P24.3) WILD-TYPE     52     50     50
D3V7, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                          12                            50
  CLUS_3                          20                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.3) MUTATED       11      9      1     11     10      9
  AMP PEAK  3(2P24.3) WILD-TYPE     14     29     15     21     24     19
                               vv
clus                            CLUS_7
  AMP PEAK  3(2P24.3) MUTATED        3
  AMP PEAK  3(2P24.3) WILD-TYPE     30
D3V8, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          11                            14
  CLUS_2                           9                            29
  CLUS_3                           1                            15
  CLUS_4                          11                            21
  CLUS_5                          10                            24
  CLUS_6                           9                            19
  CLUS_7                           3                            30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(2Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q32.3) MUTATED       13     17      6
  AMP PEAK  4(2Q32.3) WILD-TYPE     53     27     90
D4V1, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                          13                            53
  CLUS_2                          17                            27
  CLUS_3                           6                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2Q32.3) MUTATED       12      4      1     12      4      3
  AMP PEAK  4(2Q32.3) WILD-TYPE     39     30     38     26     28      9
D4V2, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                          12                            39
  CLUS_2                           4                            30
  CLUS_3                           1                            38
  CLUS_4                          12                            26
  CLUS_5                           4                            28
  CLUS_6                           3                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q32.3) MUTATED        7     16     13
  AMP PEAK  4(2Q32.3) WILD-TYPE     79     34     52
D4V3, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                           7                            79
  CLUS_2                          16                            34
  CLUS_3                          13                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(2Q32.3) MUTATED       12      4      9     11
  AMP PEAK  4(2Q32.3) WILD-TYPE     88     23     12     42
D4V4, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                          12                            88
  CLUS_2                           4                            23
  CLUS_3                           9                            12
  CLUS_4                          11                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q32.3) MUTATED       15      5     16
  AMP PEAK  4(2Q32.3) WILD-TYPE     57     52     61
D4V5, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                          15                            57
  CLUS_2                           5                            52
  CLUS_3                          16                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q32.3) MUTATED       10     23      3
  AMP PEAK  4(2Q32.3) WILD-TYPE     32    100     38
D4V6, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                          23                           100
  CLUS_3                           3                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(2Q32.3) MUTATED       15      7     14
  AMP PEAK  4(2Q32.3) WILD-TYPE     59     55     56
D4V7, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                          15                            59
  CLUS_2                           7                            55
  CLUS_3                          14                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(2Q32.3) MUTATED        6      6      0      9      6      5
  AMP PEAK  4(2Q32.3) WILD-TYPE     19     32     16     23     28     23
                               vv
clus                            CLUS_7
  AMP PEAK  4(2Q32.3) MUTATED        4
  AMP PEAK  4(2Q32.3) WILD-TYPE     29
D4V8, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                           6                            19
  CLUS_2                           6                            32
  CLUS_3                           0                            16
  CLUS_4                           9                            23
  CLUS_5                           6                            28
  CLUS_6                           5                            23
  CLUS_7                           4                            29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       66     35     59
  AMP PEAK  5(3Q26.31) WILD-TYPE      0      9     37
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           66                              0
  CLUS_2                           35                              9
  CLUS_3                           59                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.31) MUTATED       32     27     34     24     31     12
  AMP PEAK  5(3Q26.31) WILD-TYPE     19      7      5     14      1      0
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           32                             19
  CLUS_2                           27                              7
  CLUS_3                           34                              5
  CLUS_4                           24                             14
  CLUS_5                           31                              1
  CLUS_6                           12                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       77     35     45
  AMP PEAK  5(3Q26.31) WILD-TYPE      9     15     20
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           77                              9
  CLUS_2                           35                             15
  CLUS_3                           45                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(3Q26.31) MUTATED       86     25     12     34
  AMP PEAK  5(3Q26.31) WILD-TYPE     14      2      9     19
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           86                             14
  CLUS_2                           25                              2
  CLUS_3                           12                              9
  CLUS_4                           34                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       52     51     57
  AMP PEAK  5(3Q26.31) WILD-TYPE     20      6     20
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           52                             20
  CLUS_2                           51                              6
  CLUS_3                           57                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       26     95     39
  AMP PEAK  5(3Q26.31) WILD-TYPE     16     28      2
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           26                             16
  CLUS_2                           95                             28
  CLUS_3                           39                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(3Q26.31) MUTATED       53     56     51
  AMP PEAK  5(3Q26.31) WILD-TYPE     21      6     19
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           53                             21
  CLUS_2                           56                              6
  CLUS_3                           51                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(3Q26.31) MUTATED       14     35     16     18     29     18
  AMP PEAK  5(3Q26.31) WILD-TYPE     11      3      0     14      5     10
                                vv
clus                             CLUS_7
  AMP PEAK  5(3Q26.31) MUTATED       30
  AMP PEAK  5(3Q26.31) WILD-TYPE      3
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.31) MUTATED AMP PEAK  5(3Q26.31) WILD-TYPE
  CLUS_1                           14                             11
  CLUS_2                           35                              3
  CLUS_3                           16                              0
  CLUS_4                           18                             14
  CLUS_5                           29                              5
  CLUS_6                           18                             10
  CLUS_7                           30                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(3Q28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q28) MUTATED       66     35     59
  AMP PEAK  6(3Q28) WILD-TYPE      0      9     37
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        66                           0
  CLUS_2                        35                           9
  CLUS_3                        59                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(3Q28) MUTATED       31     27     33     25     32     12
  AMP PEAK  6(3Q28) WILD-TYPE     20      7      6     13      0      0
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        31                          20
  CLUS_2                        27                           7
  CLUS_3                        33                           6
  CLUS_4                        25                          13
  CLUS_5                        32                           0
  CLUS_6                        12                           0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q28) MUTATED       77     36     44
  AMP PEAK  6(3Q28) WILD-TYPE      9     14     21
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        77                           9
  CLUS_2                        36                          14
  CLUS_3                        44                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(3Q28) MUTATED       87     24     13     33
  AMP PEAK  6(3Q28) WILD-TYPE     13      3      8     20
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        87                          13
  CLUS_2                        24                           3
  CLUS_3                        13                           8
  CLUS_4                        33                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q28) MUTATED       51     51     58
  AMP PEAK  6(3Q28) WILD-TYPE     21      6     19
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        51                          21
  CLUS_2                        51                           6
  CLUS_3                        58                          19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q28) MUTATED       25     96     39
  AMP PEAK  6(3Q28) WILD-TYPE     17     27      2
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        25                          17
  CLUS_2                        96                          27
  CLUS_3                        39                           2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(3Q28) MUTATED       52     56     52
  AMP PEAK  6(3Q28) WILD-TYPE     22      6     18
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        52                          22
  CLUS_2                        56                           6
  CLUS_3                        52                          18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  6(3Q28) MUTATED       14     35     16     19     29     17     30
  AMP PEAK  6(3Q28) WILD-TYPE     11      3      0     13      5     11      3
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        14                          11
  CLUS_2                        35                           3
  CLUS_3                        16                           0
  CLUS_4                        19                          13
  CLUS_5                        29                           5
  CLUS_6                        17                          11
  CLUS_7                        30                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED        5      3      6
  AMP PEAK  7(4Q12) WILD-TYPE     61     41     90
D7V1, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         5                          61
  CLUS_2                         3                          41
  CLUS_3                         6                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(4Q12) MUTATED        5      0      1      2      3      3
  AMP PEAK  7(4Q12) WILD-TYPE     46     34     38     36     29      9
D7V2, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         5                          46
  CLUS_2                         0                          34
  CLUS_3                         1                          38
  CLUS_4                         2                          36
  CLUS_5                         3                          29
  CLUS_6                         3                           9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED        5      3      6
  AMP PEAK  7(4Q12) WILD-TYPE     81     47     59
D7V3, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         5                          81
  CLUS_2                         3                          47
  CLUS_3                         6                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(4Q12) MUTATED        7      0      1      6
  AMP PEAK  7(4Q12) WILD-TYPE     93     27     20     47
D7V4, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         7                          93
  CLUS_2                         0                          27
  CLUS_3                         1                          20
  CLUS_4                         6                          47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED        7      4      3
  AMP PEAK  7(4Q12) WILD-TYPE     65     53     74
D7V5, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         7                          65
  CLUS_2                         4                          53
  CLUS_3                         3                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED        5      8      1
  AMP PEAK  7(4Q12) WILD-TYPE     37    115     40
D7V6, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         5                          37
  CLUS_2                         8                         115
  CLUS_3                         1                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(4Q12) MUTATED        8      3      3
  AMP PEAK  7(4Q12) WILD-TYPE     66     59     67
D7V7, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         8                          66
  CLUS_2                         3                          59
  CLUS_3                         3                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  7(4Q12) MUTATED        1      4      1      2      3      3      0
  AMP PEAK  7(4Q12) WILD-TYPE     24     34     15     30     31     25     33
D7V8, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         1                          24
  CLUS_2                         4                          34
  CLUS_3                         1                          15
  CLUS_4                         2                          30
  CLUS_5                         3                          31
  CLUS_6                         3                          25
  CLUS_7                         0                          33
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       32     32     24
  AMP PEAK  8(5P15.33) WILD-TYPE     34     12     72
D8V1, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           32                             34
  CLUS_2                           32                             12
  CLUS_3                           24                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(5P15.33) MUTATED       16     15     17     24     13      3
  AMP PEAK  8(5P15.33) WILD-TYPE     35     19     22     14     19      9
D8V2, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           16                             35
  CLUS_2                           15                             19
  CLUS_3                           17                             22
  CLUS_4                           24                             14
  CLUS_5                           13                             19
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       37     28     20
  AMP PEAK  8(5P15.33) WILD-TYPE     49     22     45
D8V3, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           37                             49
  CLUS_2                           28                             22
  CLUS_3                           20                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(5P15.33) MUTATED       45     10     13     17
  AMP PEAK  8(5P15.33) WILD-TYPE     55     17      8     36
D8V4, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           45                             55
  CLUS_2                           10                             17
  CLUS_3                           13                              8
  CLUS_4                           17                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       26     20     42
  AMP PEAK  8(5P15.33) WILD-TYPE     46     37     35
D8V5, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           26                             46
  CLUS_2                           20                             37
  CLUS_3                           42                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       10     64     14
  AMP PEAK  8(5P15.33) WILD-TYPE     32     59     27
D8V6, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           64                             59
  CLUS_3                           14                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(5P15.33) MUTATED       25     22     41
  AMP PEAK  8(5P15.33) WILD-TYPE     49     40     29
D8V7, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           25                             49
  CLUS_2                           22                             40
  CLUS_3                           41                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(5P15.33) MUTATED        7     18      6     18     17     11
  AMP PEAK  8(5P15.33) WILD-TYPE     18     20     10     14     17     17
                                vv
clus                             CLUS_7
  AMP PEAK  8(5P15.33) MUTATED       11
  AMP PEAK  8(5P15.33) WILD-TYPE     22
D8V8, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                           18                             20
  CLUS_3                            6                             10
  CLUS_4                           18                             14
  CLUS_5                           17                             17
  CLUS_6                           11                             17
  CLUS_7                           11                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6P21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.33) MUTATED       17     19     20
  AMP PEAK  9(6P21.33) WILD-TYPE     49     25     76
D9V1, multiclass
        clus
vv       AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE
  CLUS_1                           17                             49
  CLUS_2                           19                             25
  CLUS_3                           20                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6P21.33) MUTATED       19      4      7     16      9      1
  AMP PEAK  9(6P21.33) WILD-TYPE     32     30     32     22     23     11
D9V2, multiclass
        clus
vv       AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE
  CLUS_1                           19                             32
  CLUS_2                            4                             30
  CLUS_3                            7                             32
  CLUS_4                           16                             22
  CLUS_5                            9                             23
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.33) MUTATED       13     19     22
  AMP PEAK  9(6P21.33) WILD-TYPE     73     31     43
D9V3, multiclass
        clus
vv       AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE
  CLUS_1                           13                             73
  CLUS_2                           19                             31
  CLUS_3                           22                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6P21.33) MUTATED       20      5     10     19
  AMP PEAK  9(6P21.33) WILD-TYPE     80     22     11     34
D9V4, multiclass
        clus
vv       AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE
  CLUS_1                           20                             80
  CLUS_2                            5                             22
  CLUS_3                           10                             11
  CLUS_4                           19                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.33) MUTATED       24     13     19
  AMP PEAK  9(6P21.33) WILD-TYPE     48     44     58
D9V5, multiclass
        clus
vv       AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           13                             44
  CLUS_3                           19                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.33) MUTATED       13     37      6
  AMP PEAK  9(6P21.33) WILD-TYPE     29     86     35
D9V6, multiclass
        clus
vv       AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                           37                             86
  CLUS_3                            6                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6P21.33) MUTATED       23     15     18
  AMP PEAK  9(6P21.33) WILD-TYPE     51     47     52
D9V7, multiclass
        clus
vv       AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE
  CLUS_1                           23                             51
  CLUS_2                           15                             47
  CLUS_3                           18                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(6P21.33) MUTATED        6     10      3     12      5     14
  AMP PEAK  9(6P21.33) WILD-TYPE     19     28     13     20     29     14
                                vv
clus                             CLUS_7
  AMP PEAK  9(6P21.33) MUTATED        6
  AMP PEAK  9(6P21.33) WILD-TYPE     27
D9V8, multiclass
        clus
vv       AMP PEAK  9(6P21.33) MUTATED AMP PEAK  9(6P21.33) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                           10                             28
  CLUS_3                            3                             13
  CLUS_4                           12                             20
  CLUS_5                            5                             29
  CLUS_6                           14                             14
  CLUS_7                            6                             27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED        7     18      9
  AMP PEAK 10(7P11.2) WILD-TYPE     59     26     87
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                           7                            59
  CLUS_2                          18                            26
  CLUS_3                           9                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P11.2) MUTATED        4      7      6     13      3      1
  AMP PEAK 10(7P11.2) WILD-TYPE     47     27     33     25     29     11
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                           4                            47
  CLUS_2                           7                            27
  CLUS_3                           6                            33
  CLUS_4                          13                            25
  CLUS_5                           3                            29
  CLUS_6                           1                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED       15     15      4
  AMP PEAK 10(7P11.2) WILD-TYPE     71     35     61
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          15                            71
  CLUS_2                          15                            35
  CLUS_3                           4                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P11.2) MUTATED       20      3      7      4
  AMP PEAK 10(7P11.2) WILD-TYPE     80     24     14     49
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                          20                            80
  CLUS_2                           3                            24
  CLUS_3                           7                            14
  CLUS_4                           4                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED        8      5     21
  AMP PEAK 10(7P11.2) WILD-TYPE     64     52     56
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                           8                            64
  CLUS_2                           5                            52
  CLUS_3                          21                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED        3     26      5
  AMP PEAK 10(7P11.2) WILD-TYPE     39     97     36
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                          26                            97
  CLUS_3                           5                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P11.2) MUTATED        8      6     20
  AMP PEAK 10(7P11.2) WILD-TYPE     66     56     50
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                           8                            66
  CLUS_2                           6                            56
  CLUS_3                          20                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(7P11.2) MUTATED        3      9      3      7      7      2
  AMP PEAK 10(7P11.2) WILD-TYPE     22     29     13     25     27     26
                               vv
clus                            CLUS_7
  AMP PEAK 10(7P11.2) MUTATED        3
  AMP PEAK 10(7P11.2) WILD-TYPE     30
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P11.2) MUTATED AMP PEAK 10(7P11.2) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                           9                            29
  CLUS_3                           3                            13
  CLUS_4                           7                            25
  CLUS_5                           7                            27
  CLUS_6                           2                            26
  CLUS_7                           3                            30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       25     22     37
  AMP PEAK 11(8Q24.21) WILD-TYPE     41     22     59
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           25                             41
  CLUS_2                           22                             22
  CLUS_3                           37                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED       18     16     17     17      9      7
  AMP PEAK 11(8Q24.21) WILD-TYPE     33     18     22     21     23      5
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           18                             33
  CLUS_2                           16                             18
  CLUS_3                           17                             22
  CLUS_4                           17                             21
  CLUS_5                            9                             23
  CLUS_6                            7                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       39     19     25
  AMP PEAK 11(8Q24.21) WILD-TYPE     47     31     40
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           39                             47
  CLUS_2                           19                             31
  CLUS_3                           25                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(8Q24.21) MUTATED       46     12      5     20
  AMP PEAK 11(8Q24.21) WILD-TYPE     54     15     16     33
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           46                             54
  CLUS_2                           12                             15
  CLUS_3                            5                             16
  CLUS_4                           20                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       30     15     39
  AMP PEAK 11(8Q24.21) WILD-TYPE     42     42     38
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           30                             42
  CLUS_2                           15                             42
  CLUS_3                           39                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       17     52     15
  AMP PEAK 11(8Q24.21) WILD-TYPE     25     71     26
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                           52                             71
  CLUS_3                           15                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(8Q24.21) MUTATED       30     20     34
  AMP PEAK 11(8Q24.21) WILD-TYPE     44     42     36
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           30                             44
  CLUS_2                           20                             42
  CLUS_3                           34                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(8Q24.21) MUTATED        5     15      8     15     17     14
  AMP PEAK 11(8Q24.21) WILD-TYPE     20     23      8     17     17     14
                                vv
clus                             CLUS_7
  AMP PEAK 11(8Q24.21) MUTATED       10
  AMP PEAK 11(8Q24.21) WILD-TYPE     23
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            5                             20
  CLUS_2                           15                             23
  CLUS_3                            8                              8
  CLUS_4                           15                             17
  CLUS_5                           17                             17
  CLUS_6                           14                             14
  CLUS_7                           10                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(9P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       11     16     16
  AMP PEAK 12(9P24.1) WILD-TYPE     55     28     80
D12V1, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          11                            55
  CLUS_2                          16                            28
  CLUS_3                          16                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(9P24.1) MUTATED        8      6     12      9      6      2
  AMP PEAK 12(9P24.1) WILD-TYPE     43     28     27     29     26     10
D12V2, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           8                            43
  CLUS_2                           6                            28
  CLUS_3                          12                            27
  CLUS_4                           9                            29
  CLUS_5                           6                            26
  CLUS_6                           2                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       20     11     12
  AMP PEAK 12(9P24.1) WILD-TYPE     66     39     53
D12V3, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          20                            66
  CLUS_2                          11                            39
  CLUS_3                          12                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(9P24.1) MUTATED       20      6      8      9
  AMP PEAK 12(9P24.1) WILD-TYPE     80     21     13     44
D12V4, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          20                            80
  CLUS_2                           6                            21
  CLUS_3                           8                            13
  CLUS_4                           9                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       14     12     17
  AMP PEAK 12(9P24.1) WILD-TYPE     58     45     60
D12V5, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          12                            45
  CLUS_3                          17                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED        6     27     10
  AMP PEAK 12(9P24.1) WILD-TYPE     36     96     31
D12V6, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                          27                            96
  CLUS_3                          10                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(9P24.1) MUTATED       16     13     14
  AMP PEAK 12(9P24.1) WILD-TYPE     58     49     56
D12V7, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          16                            58
  CLUS_2                          13                            49
  CLUS_3                          14                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(9P24.1) MUTATED        4     10      3      9      5      6
  AMP PEAK 12(9P24.1) WILD-TYPE     21     28     13     23     29     22
                               vv
clus                            CLUS_7
  AMP PEAK 12(9P24.1) MUTATED        6
  AMP PEAK 12(9P24.1) WILD-TYPE     27
D12V8, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           4                            21
  CLUS_2                          10                            28
  CLUS_3                           3                            13
  CLUS_4                           9                            23
  CLUS_5                           5                            29
  CLUS_6                           6                            22
  CLUS_7                           6                            27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(11P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        6      7      5
  AMP PEAK 13(11P13) WILD-TYPE     60     37     91
D13V1, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          6                           60
  CLUS_2                          7                           37
  CLUS_3                          5                           91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(11P13) MUTATED        5      2      3      5      3      0
  AMP PEAK 13(11P13) WILD-TYPE     46     32     36     33     29     12
D13V2, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          5                           46
  CLUS_2                          2                           32
  CLUS_3                          3                           36
  CLUS_4                          5                           33
  CLUS_5                          3                           29
  CLUS_6                          0                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        7      6      5
  AMP PEAK 13(11P13) WILD-TYPE     79     44     60
D13V3, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          7                           79
  CLUS_2                          6                           44
  CLUS_3                          5                           60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(11P13) MUTATED       10      0      3      5
  AMP PEAK 13(11P13) WILD-TYPE     90     27     18     48
D13V4, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                         10                           90
  CLUS_2                          0                           27
  CLUS_3                          3                           18
  CLUS_4                          5                           48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        6      3      9
  AMP PEAK 13(11P13) WILD-TYPE     66     54     68
D13V5, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          6                           66
  CLUS_2                          3                           54
  CLUS_3                          9                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        4     12      2
  AMP PEAK 13(11P13) WILD-TYPE     38    111     39
D13V6, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          4                           38
  CLUS_2                         12                          111
  CLUS_3                          2                           39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(11P13) MUTATED        8      3      7
  AMP PEAK 13(11P13) WILD-TYPE     66     59     63
D13V7, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          8                           66
  CLUS_2                          3                           59
  CLUS_3                          7                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(11P13) MUTATED        1      4      0      5      4      3      1
  AMP PEAK 13(11P13) WILD-TYPE     24     34     16     27     30     25     32
D13V8, multiclass
        clus
vv       AMP PEAK 13(11P13) MUTATED AMP PEAK 13(11P13) WILD-TYPE
  CLUS_1                          1                           24
  CLUS_2                          4                           34
  CLUS_3                          0                           16
  CLUS_4                          5                           27
  CLUS_5                          4                           30
  CLUS_6                          3                           25
  CLUS_7                          1                           32
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED        6     11      7
  AMP PEAK 14(11Q13.3) WILD-TYPE     60     33     89
D14V1, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            6                             60
  CLUS_2                           11                             33
  CLUS_3                            7                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11Q13.3) MUTATED        4      4      2     11      2      1
  AMP PEAK 14(11Q13.3) WILD-TYPE     47     30     37     27     30     11
D14V2, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            4                             47
  CLUS_2                            4                             30
  CLUS_3                            2                             37
  CLUS_4                           11                             27
  CLUS_5                            2                             30
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED        6     13      5
  AMP PEAK 14(11Q13.3) WILD-TYPE     80     37     60
D14V3, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            6                             80
  CLUS_2                           13                             37
  CLUS_3                            5                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED        9      0     10      5
  AMP PEAK 14(11Q13.3) WILD-TYPE     91     27     11     48
D14V4, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            9                             91
  CLUS_2                            0                             27
  CLUS_3                           10                             11
  CLUS_4                            5                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED        8      3     13
  AMP PEAK 14(11Q13.3) WILD-TYPE     64     54     64
D14V5, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            8                             64
  CLUS_2                            3                             54
  CLUS_3                           13                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED        4     18      2
  AMP PEAK 14(11Q13.3) WILD-TYPE     38    105     39
D14V6, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           18                            105
  CLUS_3                            2                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED        8      4     12
  AMP PEAK 14(11Q13.3) WILD-TYPE     66     58     58
D14V7, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            8                             66
  CLUS_2                            4                             58
  CLUS_3                           12                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(11Q13.3) MUTATED        2      5      3     10      2      2
  AMP PEAK 14(11Q13.3) WILD-TYPE     23     33     13     22     32     26
                                vv
clus                             CLUS_7
  AMP PEAK 14(11Q13.3) MUTATED        0
  AMP PEAK 14(11Q13.3) WILD-TYPE     33
D14V8, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            5                             33
  CLUS_3                            3                             13
  CLUS_4                           10                             22
  CLUS_5                            2                             32
  CLUS_6                            2                             26
  CLUS_7                            0                             33
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q22.1) MUTATED        5     19     11
  AMP PEAK 15(11Q22.1) WILD-TYPE     61     25     85
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            5                             61
  CLUS_2                           19                             25
  CLUS_3                           11                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q22.1) MUTATED        3      1      8     18      3      2
  AMP PEAK 15(11Q22.1) WILD-TYPE     48     33     31     20     29     10
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            3                             48
  CLUS_2                            1                             33
  CLUS_3                            8                             31
  CLUS_4                           18                             20
  CLUS_5                            3                             29
  CLUS_6                            2                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q22.1) MUTATED       10     20      5
  AMP PEAK 15(11Q22.1) WILD-TYPE     76     30     60
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           10                             76
  CLUS_2                           20                             30
  CLUS_3                            5                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q22.1) MUTATED       12      5     15      3
  AMP PEAK 15(11Q22.1) WILD-TYPE     88     22      6     50
D15V4, multiclass
        clus
vv       AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                           12                             88
  CLUS_2                            5                             22
  CLUS_3                           15                              6
  CLUS_4                            3                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q22.1) MUTATED        8      6     21
  AMP PEAK 15(11Q22.1) WILD-TYPE     64     51     56
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            8                             64
  CLUS_2                            6                             51
  CLUS_3                           21                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q22.1) MUTATED        3     27      5
  AMP PEAK 15(11Q22.1) WILD-TYPE     39     96     36
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           27                             96
  CLUS_3                            5                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q22.1) MUTATED        8      5     22
  AMP PEAK 15(11Q22.1) WILD-TYPE     66     57     48
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            8                             66
  CLUS_2                            5                             57
  CLUS_3                           22                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(11Q22.1) MUTATED        2      6      6     16      2      1
  AMP PEAK 15(11Q22.1) WILD-TYPE     23     32     10     16     32     27
                                vv
clus                             CLUS_7
  AMP PEAK 15(11Q22.1) MUTATED        2
  AMP PEAK 15(11Q22.1) WILD-TYPE     31
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q22.1) MUTATED AMP PEAK 15(11Q22.1) WILD-TYPE
  CLUS_1                            2                             23
  CLUS_2                            6                             32
  CLUS_3                            6                             10
  CLUS_4                           16                             16
  CLUS_5                            2                             32
  CLUS_6                            1                             27
  CLUS_7                            2                             31
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED       11     16     18
  AMP PEAK 16(13Q22.1) WILD-TYPE     55     28     78
D16V1, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           11                             55
  CLUS_2                           16                             28
  CLUS_3                           18                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(13Q22.1) MUTATED       11     12      6     13      3      0
  AMP PEAK 16(13Q22.1) WILD-TYPE     40     22     33     25     29     12
D16V2, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           11                             40
  CLUS_2                           12                             22
  CLUS_3                            6                             33
  CLUS_4                           13                             25
  CLUS_5                            3                             29
  CLUS_6                            0                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED       19     12     14
  AMP PEAK 16(13Q22.1) WILD-TYPE     67     38     51
D16V3, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           19                             67
  CLUS_2                           12                             38
  CLUS_3                           14                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(13Q22.1) MUTATED       23      6      4     12
  AMP PEAK 16(13Q22.1) WILD-TYPE     77     21     17     41
D16V4, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           23                             77
  CLUS_2                            6                             21
  CLUS_3                            4                             17
  CLUS_4                           12                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED       19      8     18
  AMP PEAK 16(13Q22.1) WILD-TYPE     53     49     59
D16V5, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                            8                             49
  CLUS_3                           18                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED        9     31      5
  AMP PEAK 16(13Q22.1) WILD-TYPE     33     92     36
D16V6, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                           31                             92
  CLUS_3                            5                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(13Q22.1) MUTATED       19      9     17
  AMP PEAK 16(13Q22.1) WILD-TYPE     55     53     53
D16V7, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           19                             55
  CLUS_2                            9                             53
  CLUS_3                           17                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(13Q22.1) MUTATED        7      8      1     11     10      5
  AMP PEAK 16(13Q22.1) WILD-TYPE     18     30     15     21     24     23
                                vv
clus                             CLUS_7
  AMP PEAK 16(13Q22.1) MUTATED        3
  AMP PEAK 16(13Q22.1) WILD-TYPE     30
D16V8, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                            8                             30
  CLUS_3                            1                             15
  CLUS_4                           11                             21
  CLUS_5                           10                             24
  CLUS_6                            5                             23
  CLUS_7                            3                             30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       17      9     24
  AMP PEAK 17(15Q26.1) WILD-TYPE     49     35     72
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           17                             49
  CLUS_2                            9                             35
  CLUS_3                           24                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q26.1) MUTATED       13      5     14      9      6      3
  AMP PEAK 17(15Q26.1) WILD-TYPE     38     29     25     29     26      9
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           13                             38
  CLUS_2                            5                             29
  CLUS_3                           14                             25
  CLUS_4                            9                             29
  CLUS_5                            6                             26
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       23     11     15
  AMP PEAK 17(15Q26.1) WILD-TYPE     63     39     50
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           23                             63
  CLUS_2                           11                             39
  CLUS_3                           15                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(15Q26.1) MUTATED       24      6      7     12
  AMP PEAK 17(15Q26.1) WILD-TYPE     76     21     14     41
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           24                             76
  CLUS_2                            6                             21
  CLUS_3                            7                             14
  CLUS_4                           12                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       21     11     18
  AMP PEAK 17(15Q26.1) WILD-TYPE     51     46     59
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           21                             51
  CLUS_2                           11                             46
  CLUS_3                           18                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       10     30     10
  AMP PEAK 17(15Q26.1) WILD-TYPE     32     93     31
D17V6, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           30                             93
  CLUS_3                           10                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(15Q26.1) MUTATED       20     13     17
  AMP PEAK 17(15Q26.1) WILD-TYPE     54     49     53
D17V7, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           20                             54
  CLUS_2                           13                             49
  CLUS_3                           17                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(15Q26.1) MUTATED        6      8      6      7     10      7
  AMP PEAK 17(15Q26.1) WILD-TYPE     19     30     10     25     24     21
                                vv
clus                             CLUS_7
  AMP PEAK 17(15Q26.1) MUTATED        6
  AMP PEAK 17(15Q26.1) WILD-TYPE     27
D17V8, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                            8                             30
  CLUS_3                            6                             10
  CLUS_4                            7                             25
  CLUS_5                           10                             24
  CLUS_6                            7                             21
  CLUS_7                            6                             27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(16P13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       18      7     18
  AMP PEAK 18(16P13.13) WILD-TYPE     48     37     78
D18V1, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            18                              48
  CLUS_2                             7                              37
  CLUS_3                            18                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16P13.13) MUTATED       16      5      6      7      7      2
  AMP PEAK 18(16P13.13) WILD-TYPE     35     29     33     31     25     10
D18V2, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            16                              35
  CLUS_2                             5                              29
  CLUS_3                             6                              33
  CLUS_4                             7                              31
  CLUS_5                             7                              25
  CLUS_6                             2                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       18      8     15
  AMP PEAK 18(16P13.13) WILD-TYPE     68     42     50
D18V3, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            18                              68
  CLUS_2                             8                              42
  CLUS_3                            15                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(16P13.13) MUTATED       18      6      2     15
  AMP PEAK 18(16P13.13) WILD-TYPE     82     21     19     38
D18V4, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            18                              82
  CLUS_2                             6                              21
  CLUS_3                             2                              19
  CLUS_4                            15                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       19     11     13
  AMP PEAK 18(16P13.13) WILD-TYPE     53     46     64
D18V5, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            19                              53
  CLUS_2                            11                              46
  CLUS_3                            13                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       13     23      7
  AMP PEAK 18(16P13.13) WILD-TYPE     29    100     34
D18V6, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            13                              29
  CLUS_2                            23                             100
  CLUS_3                             7                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(16P13.13) MUTATED       20     10     13
  AMP PEAK 18(16P13.13) WILD-TYPE     54     52     57
D18V7, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            20                              54
  CLUS_2                            10                              52
  CLUS_3                            13                              57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(16P13.13) MUTATED       10      7      2      5      6      5
  AMP PEAK 18(16P13.13) WILD-TYPE     15     31     14     27     28     23
                                 vv
clus                              CLUS_7
  AMP PEAK 18(16P13.13) MUTATED        8
  AMP PEAK 18(16P13.13) WILD-TYPE     25
D18V8, multiclass
        clus
vv       AMP PEAK 18(16P13.13) MUTATED AMP PEAK 18(16P13.13) WILD-TYPE
  CLUS_1                            10                              15
  CLUS_2                             7                              31
  CLUS_3                             2                              14
  CLUS_4                             5                              27
  CLUS_5                             6                              28
  CLUS_6                             5                              23
  CLUS_7                             8                              25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       17     10     11
  AMP PEAK 19(17Q12) WILD-TYPE     49     34     85
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         17                           49
  CLUS_2                         10                           34
  CLUS_3                         11                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q12) MUTATED       15      7      5      1      7      3
  AMP PEAK 19(17Q12) WILD-TYPE     36     27     34     37     25      9
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         15                           36
  CLUS_2                          7                           27
  CLUS_3                          5                           34
  CLUS_4                          1                           37
  CLUS_5                          7                           25
  CLUS_6                          3                            9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       14      4     19
  AMP PEAK 19(17Q12) WILD-TYPE     72     46     46
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         14                           72
  CLUS_2                          4                           46
  CLUS_3                         19                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q12) MUTATED       15      5      1     16
  AMP PEAK 19(17Q12) WILD-TYPE     85     22     20     37
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         15                           85
  CLUS_2                          5                           22
  CLUS_3                          1                           20
  CLUS_4                         16                           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       18     11      9
  AMP PEAK 19(17Q12) WILD-TYPE     54     46     68
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         18                           54
  CLUS_2                         11                           46
  CLUS_3                          9                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       14     17      7
  AMP PEAK 19(17Q12) WILD-TYPE     28    106     34
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         14                           28
  CLUS_2                         17                          106
  CLUS_3                          7                           34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q12) MUTATED       17     12      9
  AMP PEAK 19(17Q12) WILD-TYPE     57     50     61
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         17                           57
  CLUS_2                         12                           50
  CLUS_3                          9                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 19(17Q12) MUTATED        7      5      2      4      7      9      4
  AMP PEAK 19(17Q12) WILD-TYPE     18     33     14     28     27     19     29
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          7                           18
  CLUS_2                          5                           33
  CLUS_3                          2                           14
  CLUS_4                          4                           28
  CLUS_5                          7                           27
  CLUS_6                          9                           19
  CLUS_7                          4                           29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       29     13     14
  AMP PEAK 20(17Q25.1) WILD-TYPE     37     31     82
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           29                             37
  CLUS_2                           13                             31
  CLUS_3                           14                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(17Q25.1) MUTATED       15     10      8      5     12      6
  AMP PEAK 20(17Q25.1) WILD-TYPE     36     24     31     33     20      6
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                           10                             24
  CLUS_3                            8                             31
  CLUS_4                            5                             33
  CLUS_5                           12                             20
  CLUS_6                            6                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       26      8     21
  AMP PEAK 20(17Q25.1) WILD-TYPE     60     42     44
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           26                             60
  CLUS_2                            8                             42
  CLUS_3                           21                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.1) MUTATED       26     11      2     16
  AMP PEAK 20(17Q25.1) WILD-TYPE     74     16     19     37
D20V4, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           26                             74
  CLUS_2                           11                             16
  CLUS_3                            2                             19
  CLUS_4                           16                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       24     19     13
  AMP PEAK 20(17Q25.1) WILD-TYPE     48     38     64
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           19                             38
  CLUS_3                           13                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       12     29     15
  AMP PEAK 20(17Q25.1) WILD-TYPE     30     94     26
D20V6, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           12                             30
  CLUS_2                           29                             94
  CLUS_3                           15                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.1) MUTATED       23     21     12
  AMP PEAK 20(17Q25.1) WILD-TYPE     51     41     58
D20V7, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                           23                             51
  CLUS_2                           21                             41
  CLUS_3                           12                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(17Q25.1) MUTATED        6     10      3      6     10      9
  AMP PEAK 20(17Q25.1) WILD-TYPE     19     28     13     26     24     19
                                vv
clus                             CLUS_7
  AMP PEAK 20(17Q25.1) MUTATED       12
  AMP PEAK 20(17Q25.1) WILD-TYPE     21
D20V8, multiclass
        clus
vv       AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                           10                             28
  CLUS_3                            3                             13
  CLUS_4                            6                             26
  CLUS_5                           10                             24
  CLUS_6                            9                             19
  CLUS_7                           12                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q13.2) MUTATED       16     28     18
  AMP PEAK 21(19Q13.2) WILD-TYPE     50     16     78
D21V1, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           16                             50
  CLUS_2                           28                             16
  CLUS_3                           18                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19Q13.2) MUTATED       15      6      9     18      8      6
  AMP PEAK 21(19Q13.2) WILD-TYPE     36     28     30     20     24      6
D21V2, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                            6                             28
  CLUS_3                            9                             30
  CLUS_4                           18                             20
  CLUS_5                            8                             24
  CLUS_6                            6                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q13.2) MUTATED       21     19     22
  AMP PEAK 21(19Q13.2) WILD-TYPE     65     31     43
D21V3, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           21                             65
  CLUS_2                           19                             31
  CLUS_3                           22                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q13.2) MUTATED       25     10     10     17
  AMP PEAK 21(19Q13.2) WILD-TYPE     75     17     11     36
D21V4, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           25                             75
  CLUS_2                           10                             17
  CLUS_3                           10                             11
  CLUS_4                           17                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q13.2) MUTATED       26     13     23
  AMP PEAK 21(19Q13.2) WILD-TYPE     46     44     54
D21V5, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           26                             46
  CLUS_2                           13                             44
  CLUS_3                           23                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q13.2) MUTATED       11     42      9
  AMP PEAK 21(19Q13.2) WILD-TYPE     31     81     32
D21V6, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                           42                             81
  CLUS_3                            9                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q13.2) MUTATED       25     15     22
  AMP PEAK 21(19Q13.2) WILD-TYPE     49     47     48
D21V7, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                           25                             49
  CLUS_2                           15                             47
  CLUS_3                           22                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(19Q13.2) MUTATED        6     16      5      9      9     10
  AMP PEAK 21(19Q13.2) WILD-TYPE     19     22     11     23     25     18
                                vv
clus                             CLUS_7
  AMP PEAK 21(19Q13.2) MUTATED        7
  AMP PEAK 21(19Q13.2) WILD-TYPE     26
D21V8, multiclass
        clus
vv       AMP PEAK 21(19Q13.2) MUTATED AMP PEAK 21(19Q13.2) WILD-TYPE
  CLUS_1                            6                             19
  CLUS_2                           16                             22
  CLUS_3                            5                             11
  CLUS_4                            9                             23
  CLUS_5                            9                             25
  CLUS_6                           10                             18
  CLUS_7                            7                             26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED       36     25     31
  AMP PEAK 22(20Q11.21) WILD-TYPE     30     19     65
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            36                              30
  CLUS_2                            25                              19
  CLUS_3                            31                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q11.21) MUTATED       29     17     10     14     16      6
  AMP PEAK 22(20Q11.21) WILD-TYPE     22     17     29     24     16      6
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            29                              22
  CLUS_2                            17                              17
  CLUS_3                            10                              29
  CLUS_4                            14                              24
  CLUS_5                            16                              16
  CLUS_6                             6                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED       36     20     35
  AMP PEAK 22(20Q11.21) WILD-TYPE     50     30     30
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            36                              50
  CLUS_2                            20                              30
  CLUS_3                            35                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q11.21) MUTATED       39     16      7     29
  AMP PEAK 22(20Q11.21) WILD-TYPE     61     11     14     24
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            39                              61
  CLUS_2                            16                              11
  CLUS_3                             7                              14
  CLUS_4                            29                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED       36     27     29
  AMP PEAK 22(20Q11.21) WILD-TYPE     36     30     48
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            36                              36
  CLUS_2                            27                              30
  CLUS_3                            29                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED       26     45     21
  AMP PEAK 22(20Q11.21) WILD-TYPE     16     78     20
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            26                              16
  CLUS_2                            45                              78
  CLUS_3                            21                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q11.21) MUTATED       39     28     25
  AMP PEAK 22(20Q11.21) WILD-TYPE     35     34     45
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            39                              35
  CLUS_2                            28                              34
  CLUS_3                            25                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q11.21) MUTATED       16     17      8     12     12     14
  AMP PEAK 22(20Q11.21) WILD-TYPE      9     21      8     20     22     14
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20Q11.21) MUTATED       13
  AMP PEAK 22(20Q11.21) WILD-TYPE     20
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q11.21) MUTATED AMP PEAK 22(20Q11.21) WILD-TYPE
  CLUS_1                            16                               9
  CLUS_2                            17                              21
  CLUS_3                             8                               8
  CLUS_4                            12                              20
  CLUS_5                            12                              22
  CLUS_6                            14                              14
  CLUS_7                            13                              20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XQ28) MUTATED       17     10     23
  AMP PEAK 23(XQ28) WILD-TYPE     49     34     73
D23V1, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                        17                          49
  CLUS_2                        10                          34
  CLUS_3                        23                          73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(XQ28) MUTATED       11      7     10     12      5      5
  AMP PEAK 23(XQ28) WILD-TYPE     40     27     29     26     27      7
D23V2, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                        11                          40
  CLUS_2                         7                          27
  CLUS_3                        10                          29
  CLUS_4                        12                          26
  CLUS_5                         5                          27
  CLUS_6                         5                           7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XQ28) MUTATED       20     16     13
  AMP PEAK 23(XQ28) WILD-TYPE     66     34     52
D23V3, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                        20                          66
  CLUS_2                        16                          34
  CLUS_3                        13                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(XQ28) MUTATED       27      7      3     12
  AMP PEAK 23(XQ28) WILD-TYPE     73     20     18     41
D23V4, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                        27                          73
  CLUS_2                         7                          20
  CLUS_3                         3                          18
  CLUS_4                        12                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XQ28) MUTATED       19      6     25
  AMP PEAK 23(XQ28) WILD-TYPE     53     51     52
D23V5, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                        19                          53
  CLUS_2                         6                          51
  CLUS_3                        25                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XQ28) MUTATED        8     36      6
  AMP PEAK 23(XQ28) WILD-TYPE     34     87     35
D23V6, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         8                          34
  CLUS_2                        36                          87
  CLUS_3                         6                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XQ28) MUTATED       20      7     23
  AMP PEAK 23(XQ28) WILD-TYPE     54     55     47
D23V7, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                        20                          54
  CLUS_2                         7                          55
  CLUS_3                        23                          47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 23(XQ28) MUTATED        4     10      4      8     12      6      6
  AMP PEAK 23(XQ28) WILD-TYPE     21     28     12     24     22     22     27
D23V8, multiclass
        clus
vv       AMP PEAK 23(XQ28) MUTATED AMP PEAK 23(XQ28) WILD-TYPE
  CLUS_1                         4                          21
  CLUS_2                        10                          28
  CLUS_3                         4                          12
  CLUS_4                         8                          24
  CLUS_5                        12                          22
  CLUS_6                         6                          22
  CLUS_7                         6                          27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED        7     11      8
  DEL PEAK  1(1P36.31) WILD-TYPE     59     33     88
D24V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             59
  CLUS_2                           11                             33
  CLUS_3                            8                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED       12      4      2      5      2      1
  DEL PEAK  1(1P36.31) WILD-TYPE     39     30     37     33     30     11
D24V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             39
  CLUS_2                            4                             30
  CLUS_3                            2                             37
  CLUS_4                            5                             33
  CLUS_5                            2                             30
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED        4      9     13
  DEL PEAK  1(1P36.31) WILD-TYPE     82     41     52
D24V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            4                             82
  CLUS_2                            9                             41
  CLUS_3                           13                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        6      2      5     13
  DEL PEAK  1(1P36.31) WILD-TYPE     94     25     16     40
D24V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            6                             94
  CLUS_2                            2                             25
  CLUS_3                            5                             16
  CLUS_4                           13                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       12      5      9
  DEL PEAK  1(1P36.31) WILD-TYPE     60     52     68
D24V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           12                             60
  CLUS_2                            5                             52
  CLUS_3                            9                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       10     16      0
  DEL PEAK  1(1P36.31) WILD-TYPE     32    107     41
D24V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           16                            107
  CLUS_3                            0                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       14      3      9
  DEL PEAK  1(1P36.31) WILD-TYPE     60     59     61
D24V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           14                             60
  CLUS_2                            3                             59
  CLUS_3                            9                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.31) MUTATED        7      5      0      4      4      6
  DEL PEAK  1(1P36.31) WILD-TYPE     18     33     16     28     30     22
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.31) MUTATED        0
  DEL PEAK  1(1P36.31) WILD-TYPE     33
D24V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             18
  CLUS_2                            5                             33
  CLUS_3                            0                             16
  CLUS_4                            4                             28
  CLUS_5                            4                             30
  CLUS_6                            6                             22
  CLUS_7                            0                             33
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  2(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        6      9      7
  DEL PEAK  2(1P13.2) WILD-TYPE     60     35     89
D25V1, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            60
  CLUS_2                           9                            35
  CLUS_3                           7                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED        2      1      4     10      4      1
  DEL PEAK  2(1P13.2) WILD-TYPE     49     33     35     28     28     11
D25V2, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           2                            49
  CLUS_2                           1                            33
  CLUS_3                           4                            35
  CLUS_4                          10                            28
  CLUS_5                           4                            28
  CLUS_6                           1                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        6     12      3
  DEL PEAK  2(1P13.2) WILD-TYPE     80     38     62
D25V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           6                            80
  CLUS_2                          12                            38
  CLUS_3                           3                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P13.2) MUTATED       13      3      3      2
  DEL PEAK  2(1P13.2) WILD-TYPE     87     24     18     51
D25V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          13                            87
  CLUS_2                           3                            24
  CLUS_3                           3                            18
  CLUS_4                           2                            51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        4      6     12
  DEL PEAK  2(1P13.2) WILD-TYPE     68     51     65
D25V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           4                            68
  CLUS_2                           6                            51
  CLUS_3                          12                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        2     17      3
  DEL PEAK  2(1P13.2) WILD-TYPE     40    106     38
D25V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                          17                           106
  CLUS_3                           3                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.2) MUTATED        3      7     12
  DEL PEAK  2(1P13.2) WILD-TYPE     71     55     58
D25V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           3                            71
  CLUS_2                           7                            55
  CLUS_3                          12                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P13.2) MUTATED        1      8      0      6      3      1
  DEL PEAK  2(1P13.2) WILD-TYPE     24     30     16     26     31     27
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P13.2) MUTATED        3
  DEL PEAK  2(1P13.2) WILD-TYPE     30
D25V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           1                            24
  CLUS_2                           8                            30
  CLUS_3                           0                            16
  CLUS_4                           6                            26
  CLUS_5                           3                            31
  CLUS_6                           1                            27
  CLUS_7                           3                            30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  3(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        9     11     21
  DEL PEAK  3(2Q22.1) WILD-TYPE     57     33     75
D26V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           9                            57
  CLUS_2                          11                            33
  CLUS_3                          21                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        8      8      9      8      6      2
  DEL PEAK  3(2Q22.1) WILD-TYPE     43     26     30     30     26     10
D26V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            43
  CLUS_2                           8                            26
  CLUS_3                           9                            30
  CLUS_4                           8                            30
  CLUS_5                           6                            26
  CLUS_6                           2                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       17     11     11
  DEL PEAK  3(2Q22.1) WILD-TYPE     69     39     54
D26V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          17                            69
  CLUS_2                          11                            39
  CLUS_3                          11                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q22.1) MUTATED       20      5      6      8
  DEL PEAK  3(2Q22.1) WILD-TYPE     80     22     15     45
D26V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          20                            80
  CLUS_2                           5                            22
  CLUS_3                           6                            15
  CLUS_4                           8                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       13     12     16
  DEL PEAK  3(2Q22.1) WILD-TYPE     59     45     61
D26V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          13                            59
  CLUS_2                          12                            45
  CLUS_3                          16                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED        6     28      7
  DEL PEAK  3(2Q22.1) WILD-TYPE     36     95     34
D26V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                          28                            95
  CLUS_3                           7                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q22.1) MUTATED       12     12     17
  DEL PEAK  3(2Q22.1) WILD-TYPE     62     50     53
D26V7, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          12                            62
  CLUS_2                          12                            50
  CLUS_3                          17                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q22.1) MUTATED        3     10      2      7      7      6
  DEL PEAK  3(2Q22.1) WILD-TYPE     22     28     14     25     27     22
                               vv
clus                            CLUS_7
  DEL PEAK  3(2Q22.1) MUTATED        6
  DEL PEAK  3(2Q22.1) WILD-TYPE     27
D26V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                          10                            28
  CLUS_3                           2                            14
  CLUS_4                           7                            25
  CLUS_5                           7                            27
  CLUS_6                           6                            22
  CLUS_7                           6                            27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  4(2Q37.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       22     28     37
  DEL PEAK  4(2Q37.1) WILD-TYPE     44     16     59
D27V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          22                            44
  CLUS_2                          28                            16
  CLUS_3                          37                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.1) MUTATED       11     15     18     23     14      6
  DEL PEAK  4(2Q37.1) WILD-TYPE     40     19     21     15     18      6
D27V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          11                            40
  CLUS_2                          15                            19
  CLUS_3                          18                            21
  CLUS_4                          23                            15
  CLUS_5                          14                            18
  CLUS_6                           6                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       41     29     15
  DEL PEAK  4(2Q37.1) WILD-TYPE     45     21     50
D27V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          41                            45
  CLUS_2                          29                            21
  CLUS_3                          15                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.1) MUTATED       48     11     15     11
  DEL PEAK  4(2Q37.1) WILD-TYPE     52     16      6     42
D27V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          48                            52
  CLUS_2                          11                            16
  CLUS_3                          15                             6
  CLUS_4                          11                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       22     23     42
  DEL PEAK  4(2Q37.1) WILD-TYPE     50     34     35
D27V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          22                            50
  CLUS_2                          23                            34
  CLUS_3                          42                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED        9     62     16
  DEL PEAK  4(2Q37.1) WILD-TYPE     33     61     25
D27V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                           9                            33
  CLUS_2                          62                            61
  CLUS_3                          16                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.1) MUTATED       22     24     41
  DEL PEAK  4(2Q37.1) WILD-TYPE     52     38     29
D27V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                          24                            38
  CLUS_3                          41                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.1) MUTATED        6     23      8     18     16      7
  DEL PEAK  4(2Q37.1) WILD-TYPE     19     15      8     14     18     21
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.1) MUTATED        9
  DEL PEAK  4(2Q37.1) WILD-TYPE     24
D27V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                           6                            19
  CLUS_2                          23                            15
  CLUS_3                           8                             8
  CLUS_4                          18                            14
  CLUS_5                          16                            18
  CLUS_6                           7                            21
  CLUS_7                           9                            24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       20     28     36
  DEL PEAK  5(2Q37.3) WILD-TYPE     46     16     60
D28V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          20                            46
  CLUS_2                          28                            16
  CLUS_3                          36                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       11     15     18     22     12      6
  DEL PEAK  5(2Q37.3) WILD-TYPE     40     19     21     16     20      6
D28V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          11                            40
  CLUS_2                          15                            19
  CLUS_3                          18                            21
  CLUS_4                          22                            16
  CLUS_5                          12                            20
  CLUS_6                           6                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       38     29     15
  DEL PEAK  5(2Q37.3) WILD-TYPE     48     21     50
D28V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          38                            48
  CLUS_2                          29                            21
  CLUS_3                          15                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       45     11     15     11
  DEL PEAK  5(2Q37.3) WILD-TYPE     55     16      6     42
D28V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          45                            55
  CLUS_2                          11                            16
  CLUS_3                          15                             6
  CLUS_4                          11                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       22     21     41
  DEL PEAK  5(2Q37.3) WILD-TYPE     50     36     36
D28V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          22                            50
  CLUS_2                          21                            36
  CLUS_3                          41                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        9     61     14
  DEL PEAK  5(2Q37.3) WILD-TYPE     33     62     27
D28V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           9                            33
  CLUS_2                          61                            62
  CLUS_3                          14                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       22     22     40
  DEL PEAK  5(2Q37.3) WILD-TYPE     52     40     30
D28V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                          22                            40
  CLUS_3                          40                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        6     23      7     18     15      7
  DEL PEAK  5(2Q37.3) WILD-TYPE     19     15      9     14     19     21
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        8
  DEL PEAK  5(2Q37.3) WILD-TYPE     25
D28V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           6                            19
  CLUS_2                          23                            15
  CLUS_3                           7                             9
  CLUS_4                          18                            14
  CLUS_5                          15                            19
  CLUS_6                           7                            21
  CLUS_7                           8                            25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       31     28     28
  DEL PEAK  6(3P14.2) WILD-TYPE     35     16     68
D29V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          31                            35
  CLUS_2                          28                            16
  CLUS_3                          28                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED       11     18     12     23     18      5
  DEL PEAK  6(3P14.2) WILD-TYPE     40     16     27     15     14      7
D29V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          11                            40
  CLUS_2                          18                            16
  CLUS_3                          12                            27
  CLUS_4                          23                            15
  CLUS_5                          18                            14
  CLUS_6                           5                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       40     26     19
  DEL PEAK  6(3P14.2) WILD-TYPE     46     24     46
D29V3, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          40                            46
  CLUS_2                          26                            24
  CLUS_3                          19                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       51     15      8     11
  DEL PEAK  6(3P14.2) WILD-TYPE     49     12     13     42
D29V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          51                            49
  CLUS_2                          15                            12
  CLUS_3                           8                            13
  CLUS_4                          11                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       20     28     39
  DEL PEAK  6(3P14.2) WILD-TYPE     52     29     38
D29V5, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          20                            52
  CLUS_2                          28                            29
  CLUS_3                          39                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED        8     58     21
  DEL PEAK  6(3P14.2) WILD-TYPE     34     65     20
D29V6, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          58                            65
  CLUS_3                          21                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       22     31     34
  DEL PEAK  6(3P14.2) WILD-TYPE     52     31     36
D29V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          22                            52
  CLUS_2                          31                            31
  CLUS_3                          34                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED        3     23      8     16     15      7
  DEL PEAK  6(3P14.2) WILD-TYPE     22     15      8     16     19     21
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P14.2) MUTATED       15
  DEL PEAK  6(3P14.2) WILD-TYPE     18
D29V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           3                            22
  CLUS_2                          23                            15
  CLUS_3                           8                             8
  CLUS_4                          16                            16
  CLUS_5                          15                            19
  CLUS_6                           7                            21
  CLUS_7                          15                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  7(4Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED       23     31     12
  DEL PEAK  7(4Q21.3) WILD-TYPE     43     13     84
D30V1, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          23                            43
  CLUS_2                          31                            13
  CLUS_3                          12                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q21.3) MUTATED       14     10     14     17      9      2
  DEL PEAK  7(4Q21.3) WILD-TYPE     37     24     25     21     23     10
D30V2, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          14                            37
  CLUS_2                          10                            24
  CLUS_3                          14                            25
  CLUS_4                          17                            21
  CLUS_5                           9                            23
  CLUS_6                           2                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED       27     20     17
  DEL PEAK  7(4Q21.3) WILD-TYPE     59     30     48
D30V3, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          27                            59
  CLUS_2                          20                            30
  CLUS_3                          17                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q21.3) MUTATED       30      7     14     13
  DEL PEAK  7(4Q21.3) WILD-TYPE     70     20      7     40
D30V4, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          30                            70
  CLUS_2                           7                            20
  CLUS_3                          14                             7
  CLUS_4                          13                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED       19     19     28
  DEL PEAK  7(4Q21.3) WILD-TYPE     53     38     49
D30V5, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          19                            53
  CLUS_2                          19                            38
  CLUS_3                          28                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED        8     43     15
  DEL PEAK  7(4Q21.3) WILD-TYPE     34     80     26
D30V6, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          43                            80
  CLUS_3                          15                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q21.3) MUTATED       20     23     23
  DEL PEAK  7(4Q21.3) WILD-TYPE     54     39     47
D30V7, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                          20                            54
  CLUS_2                          23                            39
  CLUS_3                          23                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q21.3) MUTATED        4      8      6     15     12     11
  DEL PEAK  7(4Q21.3) WILD-TYPE     21     30     10     17     22     17
                               vv
clus                            CLUS_7
  DEL PEAK  7(4Q21.3) MUTATED       10
  DEL PEAK  7(4Q21.3) WILD-TYPE     23
D30V8, multiclass
        clus
vv       DEL PEAK  7(4Q21.3) MUTATED DEL PEAK  7(4Q21.3) WILD-TYPE
  CLUS_1                           4                            21
  CLUS_2                           8                            30
  CLUS_3                           6                            10
  CLUS_4                          15                            17
  CLUS_5                          12                            22
  CLUS_6                          11                            17
  CLUS_7                          10                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  8(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       21     33      9
  DEL PEAK  8(4Q22.1) WILD-TYPE     45     11     87
D31V1, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          21                            45
  CLUS_2                          33                            11
  CLUS_3                           9                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED       14     11     12     16      8      2
  DEL PEAK  8(4Q22.1) WILD-TYPE     37     23     27     22     24     10
D31V2, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          14                            37
  CLUS_2                          11                            23
  CLUS_3                          12                            27
  CLUS_4                          16                            22
  CLUS_5                           8                            24
  CLUS_6                           2                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       24     21     17
  DEL PEAK  8(4Q22.1) WILD-TYPE     62     29     48
D31V3, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          24                            62
  CLUS_2                          21                            29
  CLUS_3                          17                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q22.1) MUTATED       28      7     14     13
  DEL PEAK  8(4Q22.1) WILD-TYPE     72     20      7     40
D31V4, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          28                            72
  CLUS_2                           7                            20
  CLUS_3                          14                             7
  CLUS_4                          13                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       20     15     28
  DEL PEAK  8(4Q22.1) WILD-TYPE     52     42     49
D31V5, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          20                            52
  CLUS_2                          15                            42
  CLUS_3                          28                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED        8     43     12
  DEL PEAK  8(4Q22.1) WILD-TYPE     34     80     29
D31V6, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          43                            80
  CLUS_3                          12                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q22.1) MUTATED       21     19     23
  DEL PEAK  8(4Q22.1) WILD-TYPE     53     43     47
D31V7, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                          21                            53
  CLUS_2                          19                            43
  CLUS_3                          23                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q22.1) MUTATED        4      6      5     15     14     11
  DEL PEAK  8(4Q22.1) WILD-TYPE     21     32     11     17     20     17
                               vv
clus                            CLUS_7
  DEL PEAK  8(4Q22.1) MUTATED        8
  DEL PEAK  8(4Q22.1) WILD-TYPE     25
D31V8, multiclass
        clus
vv       DEL PEAK  8(4Q22.1) MUTATED DEL PEAK  8(4Q22.1) WILD-TYPE
  CLUS_1                           4                            21
  CLUS_2                           6                            32
  CLUS_3                           5                            11
  CLUS_4                          15                            17
  CLUS_5                          14                            20
  CLUS_6                          11                            17
  CLUS_7                           8                            25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  9(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.2) MUTATED       24     35     17
  DEL PEAK  9(4Q35.2) WILD-TYPE     42      9     79
D32V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE
  CLUS_1                          24                            42
  CLUS_2                          35                             9
  CLUS_3                          17                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.2) MUTATED       17     13     13     20     10      3
  DEL PEAK  9(4Q35.2) WILD-TYPE     34     21     26     18     22      9
D32V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE
  CLUS_1                          17                            34
  CLUS_2                          13                            21
  CLUS_3                          13                            26
  CLUS_4                          20                            18
  CLUS_5                          10                            22
  CLUS_6                           3                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.2) MUTATED       27     26     22
  DEL PEAK  9(4Q35.2) WILD-TYPE     59     24     43
D32V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE
  CLUS_1                          27                            59
  CLUS_2                          26                            24
  CLUS_3                          22                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.2) MUTATED       32     10     16     17
  DEL PEAK  9(4Q35.2) WILD-TYPE     68     17      5     36
D32V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE
  CLUS_1                          32                            68
  CLUS_2                          10                            17
  CLUS_3                          16                             5
  CLUS_4                          17                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.2) MUTATED       23     20     33
  DEL PEAK  9(4Q35.2) WILD-TYPE     49     37     44
D32V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE
  CLUS_1                          23                            49
  CLUS_2                          20                            37
  CLUS_3                          33                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.2) MUTATED       11     47     18
  DEL PEAK  9(4Q35.2) WILD-TYPE     31     76     23
D32V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE
  CLUS_1                          11                            31
  CLUS_2                          47                            76
  CLUS_3                          18                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.2) MUTATED       25     24     27
  DEL PEAK  9(4Q35.2) WILD-TYPE     49     38     43
D32V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE
  CLUS_1                          25                            49
  CLUS_2                          24                            38
  CLUS_3                          27                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.2) MUTATED        5      8      5     18     13     14
  DEL PEAK  9(4Q35.2) WILD-TYPE     20     30     11     14     21     14
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.2) MUTATED       13
  DEL PEAK  9(4Q35.2) WILD-TYPE     20
D32V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.2) MUTATED DEL PEAK  9(4Q35.2) WILD-TYPE
  CLUS_1                           5                            20
  CLUS_2                           8                            30
  CLUS_3                           5                            11
  CLUS_4                          18                            14
  CLUS_5                          13                            21
  CLUS_6                          14                            14
  CLUS_7                          13                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 10(5Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q22.3) MUTATED       19     18     15
  DEL PEAK 10(5Q22.3) WILD-TYPE     47     26     81
D33V1, multiclass
        clus
vv       DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE
  CLUS_1                          19                            47
  CLUS_2                          18                            26
  CLUS_3                          15                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q22.3) MUTATED       11      7      8     12     10      4
  DEL PEAK 10(5Q22.3) WILD-TYPE     40     27     31     26     22      8
D33V2, multiclass
        clus
vv       DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE
  CLUS_1                          11                            40
  CLUS_2                           7                            27
  CLUS_3                           8                            31
  CLUS_4                          12                            26
  CLUS_5                          10                            22
  CLUS_6                           4                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q22.3) MUTATED       23     15     13
  DEL PEAK 10(5Q22.3) WILD-TYPE     63     35     52
D33V3, multiclass
        clus
vv       DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE
  CLUS_1                          23                            63
  CLUS_2                          15                            35
  CLUS_3                          13                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(5Q22.3) MUTATED       26     10      5     10
  DEL PEAK 10(5Q22.3) WILD-TYPE     74     17     16     43
D33V4, multiclass
        clus
vv       DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE
  CLUS_1                          26                            74
  CLUS_2                          10                            17
  CLUS_3                           5                            16
  CLUS_4                          10                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q22.3) MUTATED       14     14     24
  DEL PEAK 10(5Q22.3) WILD-TYPE     58     43     53
D33V5, multiclass
        clus
vv       DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          14                            43
  CLUS_3                          24                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q22.3) MUTATED        7     32     13
  DEL PEAK 10(5Q22.3) WILD-TYPE     35     91     28
D33V6, multiclass
        clus
vv       DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          32                            91
  CLUS_3                          13                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q22.3) MUTATED       14     15     23
  DEL PEAK 10(5Q22.3) WILD-TYPE     60     47     47
D33V7, multiclass
        clus
vv       DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE
  CLUS_1                          14                            60
  CLUS_2                          15                            47
  CLUS_3                          23                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(5Q22.3) MUTATED        1      7      9     12      7      9
  DEL PEAK 10(5Q22.3) WILD-TYPE     24     31      7     20     27     19
                               vv
clus                            CLUS_7
  DEL PEAK 10(5Q22.3) MUTATED        7
  DEL PEAK 10(5Q22.3) WILD-TYPE     26
D33V8, multiclass
        clus
vv       DEL PEAK 10(5Q22.3) MUTATED DEL PEAK 10(5Q22.3) WILD-TYPE
  CLUS_1                           1                            24
  CLUS_2                           7                            31
  CLUS_3                           9                             7
  CLUS_4                          12                            20
  CLUS_5                           7                            27
  CLUS_6                           9                            19
  CLUS_7                           7                            26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 11(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q35.2) MUTATED       18     19     16
  DEL PEAK 11(5Q35.2) WILD-TYPE     48     25     80
D34V1, multiclass
        clus
vv       DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE
  CLUS_1                          18                            48
  CLUS_2                          19                            25
  CLUS_3                          16                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q35.2) MUTATED       12      9      9     12      8      3
  DEL PEAK 11(5Q35.2) WILD-TYPE     39     25     30     26     24      9
D34V2, multiclass
        clus
vv       DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE
  CLUS_1                          12                            39
  CLUS_2                           9                            25
  CLUS_3                           9                            30
  CLUS_4                          12                            26
  CLUS_5                           8                            24
  CLUS_6                           3                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q35.2) MUTATED       21     15     14
  DEL PEAK 11(5Q35.2) WILD-TYPE     65     35     51
D34V3, multiclass
        clus
vv       DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE
  CLUS_1                          21                            65
  CLUS_2                          15                            35
  CLUS_3                          14                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(5Q35.2) MUTATED       25      8      5     12
  DEL PEAK 11(5Q35.2) WILD-TYPE     75     19     16     41
D34V4, multiclass
        clus
vv       DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE
  CLUS_1                          25                            75
  CLUS_2                           8                            19
  CLUS_3                           5                            16
  CLUS_4                          12                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q35.2) MUTATED       14     12     27
  DEL PEAK 11(5Q35.2) WILD-TYPE     58     45     50
D34V5, multiclass
        clus
vv       DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          12                            45
  CLUS_3                          27                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q35.2) MUTATED        8     35     10
  DEL PEAK 11(5Q35.2) WILD-TYPE     34     88     31
D34V6, multiclass
        clus
vv       DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          35                            88
  CLUS_3                          10                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q35.2) MUTATED       14     13     26
  DEL PEAK 11(5Q35.2) WILD-TYPE     60     49     44
D34V7, multiclass
        clus
vv       DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE
  CLUS_1                          14                            60
  CLUS_2                          13                            49
  CLUS_3                          26                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(5Q35.2) MUTATED        2      6      7     13      9     10
  DEL PEAK 11(5Q35.2) WILD-TYPE     23     32      9     19     25     18
                               vv
clus                            CLUS_7
  DEL PEAK 11(5Q35.2) MUTATED        6
  DEL PEAK 11(5Q35.2) WILD-TYPE     27
D34V8, multiclass
        clus
vv       DEL PEAK 11(5Q35.2) MUTATED DEL PEAK 11(5Q35.2) WILD-TYPE
  CLUS_1                           2                            23
  CLUS_2                           6                            32
  CLUS_3                           7                             9
  CLUS_4                          13                            19
  CLUS_5                           9                            25
  CLUS_6                          10                            18
  CLUS_7                           6                            27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 12(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P24.2) MUTATED        9      6     15
  DEL PEAK 12(6P24.2) WILD-TYPE     57     38     81
D35V1, multiclass
        clus
vv       DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE
  CLUS_1                           9                            57
  CLUS_2                           6                            38
  CLUS_3                          15                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6P24.2) MUTATED        5      7      6      4      8      0
  DEL PEAK 12(6P24.2) WILD-TYPE     46     27     33     34     24     12
D35V2, multiclass
        clus
vv       DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE
  CLUS_1                           5                            46
  CLUS_2                           7                            27
  CLUS_3                           6                            33
  CLUS_4                           4                            34
  CLUS_5                           8                            24
  CLUS_6                           0                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P24.2) MUTATED       18      4      7
  DEL PEAK 12(6P24.2) WILD-TYPE     68     46     58
D35V3, multiclass
        clus
vv       DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE
  CLUS_1                          18                            68
  CLUS_2                           4                            46
  CLUS_3                           7                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6P24.2) MUTATED       17      4      3      5
  DEL PEAK 12(6P24.2) WILD-TYPE     83     23     18     48
D35V4, multiclass
        clus
vv       DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE
  CLUS_1                          17                            83
  CLUS_2                           4                            23
  CLUS_3                           3                            18
  CLUS_4                           5                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P24.2) MUTATED        8     11     11
  DEL PEAK 12(6P24.2) WILD-TYPE     64     46     66
D35V5, multiclass
        clus
vv       DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE
  CLUS_1                           8                            64
  CLUS_2                          11                            46
  CLUS_3                          11                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P24.2) MUTATED        3     19      8
  DEL PEAK 12(6P24.2) WILD-TYPE     39    104     33
D35V6, multiclass
        clus
vv       DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                          19                           104
  CLUS_3                           8                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6P24.2) MUTATED        9     10     11
  DEL PEAK 12(6P24.2) WILD-TYPE     65     52     59
D35V7, multiclass
        clus
vv       DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE
  CLUS_1                           9                            65
  CLUS_2                          10                            52
  CLUS_3                          11                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6P24.2) MUTATED        2      7      1      6      5      3
  DEL PEAK 12(6P24.2) WILD-TYPE     23     31     15     26     29     25
                               vv
clus                            CLUS_7
  DEL PEAK 12(6P24.2) MUTATED        6
  DEL PEAK 12(6P24.2) WILD-TYPE     27
D35V8, multiclass
        clus
vv       DEL PEAK 12(6P24.2) MUTATED DEL PEAK 12(6P24.2) WILD-TYPE
  CLUS_1                           2                            23
  CLUS_2                           7                            31
  CLUS_3                           1                            15
  CLUS_4                           6                            26
  CLUS_5                           5                            29
  CLUS_6                           3                            25
  CLUS_7                           6                            27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       15     24     31
  DEL PEAK 13(6Q26) WILD-TYPE     51     20     65
D36V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        15                          51
  CLUS_2                        24                          20
  CLUS_3                        31                          65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED       15     16     12     16      9      2
  DEL PEAK 13(6Q26) WILD-TYPE     36     18     27     22     23     10
D36V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        15                          36
  CLUS_2                        16                          18
  CLUS_3                        12                          27
  CLUS_4                        16                          22
  CLUS_5                         9                          23
  CLUS_6                         2                          10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       31     20     18
  DEL PEAK 13(6Q26) WILD-TYPE     55     30     47
D36V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        31                          55
  CLUS_2                        20                          30
  CLUS_3                        18                          47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED       35      8     10     16
  DEL PEAK 13(6Q26) WILD-TYPE     65     19     11     37
D36V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        35                          65
  CLUS_2                         8                          19
  CLUS_3                        10                          11
  CLUS_4                        16                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       20     21     29
  DEL PEAK 13(6Q26) WILD-TYPE     52     36     48
D36V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        20                          52
  CLUS_2                        21                          36
  CLUS_3                        29                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       12     42     16
  DEL PEAK 13(6Q26) WILD-TYPE     30     81     25
D36V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        12                          30
  CLUS_2                        42                          81
  CLUS_3                        16                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       20     23     27
  DEL PEAK 13(6Q26) WILD-TYPE     54     39     43
D36V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        20                          54
  CLUS_2                        23                          39
  CLUS_3                        27                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(6Q26) MUTATED        9     14      5     15      9      6     12
  DEL PEAK 13(6Q26) WILD-TYPE     16     24     11     17     25     22     21
D36V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         9                          16
  CLUS_2                        14                          24
  CLUS_3                         5                          11
  CLUS_4                        15                          17
  CLUS_5                         9                          25
  CLUS_6                         6                          22
  CLUS_7                        12                          21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 14(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q34) MUTATED       15     17     13
  DEL PEAK 14(7Q34) WILD-TYPE     51     27     83
D37V1, multiclass
        clus
vv       DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE
  CLUS_1                        15                          51
  CLUS_2                        17                          27
  CLUS_3                        13                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7Q34) MUTATED       12      7      7     13      4      2
  DEL PEAK 14(7Q34) WILD-TYPE     39     27     32     25     28     10
D37V2, multiclass
        clus
vv       DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE
  CLUS_1                        12                          39
  CLUS_2                         7                          27
  CLUS_3                         7                          32
  CLUS_4                        13                          25
  CLUS_5                         4                          28
  CLUS_6                         2                          10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q34) MUTATED       16     14     14
  DEL PEAK 14(7Q34) WILD-TYPE     70     36     51
D37V3, multiclass
        clus
vv       DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE
  CLUS_1                        16                          70
  CLUS_2                        14                          36
  CLUS_3                        14                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7Q34) MUTATED       21      4      6     13
  DEL PEAK 14(7Q34) WILD-TYPE     79     23     15     40
D37V4, multiclass
        clus
vv       DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE
  CLUS_1                        21                          79
  CLUS_2                         4                          23
  CLUS_3                         6                          15
  CLUS_4                        13                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q34) MUTATED       13     11     21
  DEL PEAK 14(7Q34) WILD-TYPE     59     46     56
D37V5, multiclass
        clus
vv       DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE
  CLUS_1                        13                          59
  CLUS_2                        11                          46
  CLUS_3                        21                          56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q34) MUTATED       11     24     10
  DEL PEAK 14(7Q34) WILD-TYPE     31     99     31
D37V6, multiclass
        clus
vv       DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE
  CLUS_1                        11                          31
  CLUS_2                        24                          99
  CLUS_3                        10                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q34) MUTATED       14     12     19
  DEL PEAK 14(7Q34) WILD-TYPE     60     50     51
D37V7, multiclass
        clus
vv       DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE
  CLUS_1                        14                          60
  CLUS_2                        12                          50
  CLUS_3                        19                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 14(7Q34) MUTATED        4      4      4     12      7      8      6
  DEL PEAK 14(7Q34) WILD-TYPE     21     34     12     20     27     20     27
D37V8, multiclass
        clus
vv       DEL PEAK 14(7Q34) MUTATED DEL PEAK 14(7Q34) WILD-TYPE
  CLUS_1                         4                          21
  CLUS_2                         4                          34
  CLUS_3                         4                          12
  CLUS_4                        12                          20
  CLUS_5                         7                          27
  CLUS_6                         8                          20
  CLUS_7                         6                          27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 15(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.3) MUTATED       29     22     22
  DEL PEAK 15(8P23.3) WILD-TYPE     37     22     74
D38V1, multiclass
        clus
vv       DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE
  CLUS_1                          29                            37
  CLUS_2                          22                            22
  CLUS_3                          22                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.3) MUTATED       18      8      9     19     15      4
  DEL PEAK 15(8P23.3) WILD-TYPE     33     26     30     19     17      8
D38V2, multiclass
        clus
vv       DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE
  CLUS_1                          18                            33
  CLUS_2                           8                            26
  CLUS_3                           9                            30
  CLUS_4                          19                            19
  CLUS_5                          15                            17
  CLUS_6                           4                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.3) MUTATED       23     25     23
  DEL PEAK 15(8P23.3) WILD-TYPE     63     25     42
D38V3, multiclass
        clus
vv       DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE
  CLUS_1                          23                            63
  CLUS_2                          25                            25
  CLUS_3                          23                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(8P23.3) MUTATED       33      9     10     19
  DEL PEAK 15(8P23.3) WILD-TYPE     67     18     11     34
D38V4, multiclass
        clus
vv       DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE
  CLUS_1                          33                            67
  CLUS_2                           9                            18
  CLUS_3                          10                            11
  CLUS_4                          19                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.3) MUTATED       27     17     29
  DEL PEAK 15(8P23.3) WILD-TYPE     45     40     48
D38V5, multiclass
        clus
vv       DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE
  CLUS_1                          27                            45
  CLUS_2                          17                            40
  CLUS_3                          29                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.3) MUTATED       16     44     13
  DEL PEAK 15(8P23.3) WILD-TYPE     26     79     28
D38V6, multiclass
        clus
vv       DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE
  CLUS_1                          16                            26
  CLUS_2                          44                            79
  CLUS_3                          13                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P23.3) MUTATED       26     20     27
  DEL PEAK 15(8P23.3) WILD-TYPE     48     42     43
D38V7, multiclass
        clus
vv       DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE
  CLUS_1                          26                            48
  CLUS_2                          20                            42
  CLUS_3                          27                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(8P23.3) MUTATED        7     14      5     16     10     11
  DEL PEAK 15(8P23.3) WILD-TYPE     18     24     11     16     24     17
                               vv
clus                            CLUS_7
  DEL PEAK 15(8P23.3) MUTATED       10
  DEL PEAK 15(8P23.3) WILD-TYPE     23
D38V8, multiclass
        clus
vv       DEL PEAK 15(8P23.3) MUTATED DEL PEAK 15(8P23.3) WILD-TYPE
  CLUS_1                           7                            18
  CLUS_2                          14                            24
  CLUS_3                           5                            11
  CLUS_4                          16                            16
  CLUS_5                          10                            24
  CLUS_6                          11                            17
  CLUS_7                          10                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 16(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       18     22     20
  DEL PEAK 16(10Q23.31) WILD-TYPE     48     22     76
D39V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            18                              48
  CLUS_2                            22                              22
  CLUS_3                            20                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED       17      7      9     14     11      2
  DEL PEAK 16(10Q23.31) WILD-TYPE     34     27     30     24     21     10
D39V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            17                              34
  CLUS_2                             7                              27
  CLUS_3                             9                              30
  CLUS_4                            14                              24
  CLUS_5                            11                              21
  CLUS_6                             2                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       23     17     19
  DEL PEAK 16(10Q23.31) WILD-TYPE     63     33     46
D39V3, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            23                              63
  CLUS_2                            17                              33
  CLUS_3                            19                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       28      6      8     17
  DEL PEAK 16(10Q23.31) WILD-TYPE     72     21     13     36
D39V4, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            28                              72
  CLUS_2                             6                              21
  CLUS_3                             8                              13
  CLUS_4                            17                              36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       21     16     23
  DEL PEAK 16(10Q23.31) WILD-TYPE     51     41     54
D39V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            21                              51
  CLUS_2                            16                              41
  CLUS_3                            23                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       14     35     11
  DEL PEAK 16(10Q23.31) WILD-TYPE     28     88     30
D39V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            14                              28
  CLUS_2                            35                              88
  CLUS_3                            11                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       22     18     20
  DEL PEAK 16(10Q23.31) WILD-TYPE     52     44     50
D39V7, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            22                              52
  CLUS_2                            18                              44
  CLUS_3                            20                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.31) MUTATED        9      9      4     10      9      9
  DEL PEAK 16(10Q23.31) WILD-TYPE     16     29     12     22     25     19
                                 vv
clus                              CLUS_7
  DEL PEAK 16(10Q23.31) MUTATED       10
  DEL PEAK 16(10Q23.31) WILD-TYPE     23
D39V8, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             9                              16
  CLUS_2                             9                              29
  CLUS_3                             4                              12
  CLUS_4                            10                              22
  CLUS_5                             9                              25
  CLUS_6                             9                              19
  CLUS_7                            10                              23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 17(11P15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       24     19     25
  DEL PEAK 17(11P15.1) WILD-TYPE     42     25     71
D40V1, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                           19                             25
  CLUS_3                           25                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.1) MUTATED        9     14     14     18     10      3
  DEL PEAK 17(11P15.1) WILD-TYPE     42     20     25     20     22      9
D40V2, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                            9                             42
  CLUS_2                           14                             20
  CLUS_3                           14                             25
  CLUS_4                           18                             20
  CLUS_5                           10                             22
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       34     18     15
  DEL PEAK 17(11P15.1) WILD-TYPE     52     32     50
D40V3, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           34                             52
  CLUS_2                           18                             32
  CLUS_3                           15                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.1) MUTATED       42      9      6     10
  DEL PEAK 17(11P15.1) WILD-TYPE     58     18     15     43
D40V4, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           42                             58
  CLUS_2                            9                             18
  CLUS_3                            6                             15
  CLUS_4                           10                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       19     16     33
  DEL PEAK 17(11P15.1) WILD-TYPE     53     41     44
D40V5, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           16                             41
  CLUS_3                           33                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED        8     47     13
  DEL PEAK 17(11P15.1) WILD-TYPE     34     76     28
D40V6, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           47                             76
  CLUS_3                           13                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.1) MUTATED       20     20     28
  DEL PEAK 17(11P15.1) WILD-TYPE     54     42     42
D40V7, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                           20                             54
  CLUS_2                           20                             42
  CLUS_3                           28                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.1) MUTATED        5     18      8     10     13      7
  DEL PEAK 17(11P15.1) WILD-TYPE     20     20      8     22     21     21
                                vv
clus                             CLUS_7
  DEL PEAK 17(11P15.1) MUTATED        7
  DEL PEAK 17(11P15.1) WILD-TYPE     26
D40V8, multiclass
        clus
vv       DEL PEAK 17(11P15.1) MUTATED DEL PEAK 17(11P15.1) WILD-TYPE
  CLUS_1                            5                             20
  CLUS_2                           18                             20
  CLUS_3                            8                              8
  CLUS_4                           10                             22
  CLUS_5                           13                             21
  CLUS_6                            7                             21
  CLUS_7                            7                             26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 18(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q25) MUTATED       48     30     37
  DEL PEAK 18(11Q25) WILD-TYPE     18     14     59
D41V1, multiclass
        clus
vv       DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE
  CLUS_1                         48                           18
  CLUS_2                         30                           14
  CLUS_3                         37                           59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11Q25) MUTATED       20     18     22     24     22      9
  DEL PEAK 18(11Q25) WILD-TYPE     31     16     17     14     10      3
D41V2, multiclass
        clus
vv       DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE
  CLUS_1                         20                           31
  CLUS_2                         18                           16
  CLUS_3                         22                           17
  CLUS_4                         24                           14
  CLUS_5                         22                           10
  CLUS_6                          9                            3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q25) MUTATED       54     30     29
  DEL PEAK 18(11Q25) WILD-TYPE     32     20     36
D41V3, multiclass
        clus
vv       DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE
  CLUS_1                         54                           32
  CLUS_2                         30                           20
  CLUS_3                         29                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11Q25) MUTATED       61     17     14     21
  DEL PEAK 18(11Q25) WILD-TYPE     39     10      7     32
D41V4, multiclass
        clus
vv       DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE
  CLUS_1                         61                           39
  CLUS_2                         17                           10
  CLUS_3                         14                            7
  CLUS_4                         21                           32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q25) MUTATED       40     27     48
  DEL PEAK 18(11Q25) WILD-TYPE     32     30     29
D41V5, multiclass
        clus
vv       DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE
  CLUS_1                         40                           32
  CLUS_2                         27                           30
  CLUS_3                         48                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q25) MUTATED       16     76     23
  DEL PEAK 18(11Q25) WILD-TYPE     26     47     18
D41V6, multiclass
        clus
vv       DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE
  CLUS_1                         16                           26
  CLUS_2                         76                           47
  CLUS_3                         23                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11Q25) MUTATED       40     32     43
  DEL PEAK 18(11Q25) WILD-TYPE     34     30     27
D41V7, multiclass
        clus
vv       DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE
  CLUS_1                         40                           34
  CLUS_2                         32                           30
  CLUS_3                         43                           27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 18(11Q25) MUTATED       10     28     14     17     20     11     15
  DEL PEAK 18(11Q25) WILD-TYPE     15     10      2     15     14     17     18
D41V8, multiclass
        clus
vv       DEL PEAK 18(11Q25) MUTATED DEL PEAK 18(11Q25) WILD-TYPE
  CLUS_1                         10                           15
  CLUS_2                         28                           10
  CLUS_3                         14                            2
  CLUS_4                         17                           15
  CLUS_5                         20                           14
  CLUS_6                         11                           17
  CLUS_7                         15                           18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 19(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(13Q12.11) MUTATED       24     22     27
  DEL PEAK 19(13Q12.11) WILD-TYPE     42     22     69
D42V1, multiclass
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  CLUS_1                            24                              42
  CLUS_2                            22                              22
  CLUS_3                            27                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(13Q12.11) MUTATED        9     16     16     18     10      4
  DEL PEAK 19(13Q12.11) WILD-TYPE     42     18     23     20     22      8
D42V2, multiclass
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  CLUS_1                             9                              42
  CLUS_2                            16                              18
  CLUS_3                            16                              23
  CLUS_4                            18                              20
  CLUS_5                            10                              22
  CLUS_6                             4                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(13Q12.11) MUTATED       32     27     13
  DEL PEAK 19(13Q12.11) WILD-TYPE     54     23     52
D42V3, multiclass
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  CLUS_1                            32                              54
  CLUS_2                            27                              23
  CLUS_3                            13                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(13Q12.11) MUTATED       42      9     11     10
  DEL PEAK 19(13Q12.11) WILD-TYPE     58     18     10     43
D42V4, multiclass
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  CLUS_1                            42                              58
  CLUS_2                             9                              18
  CLUS_3                            11                              10
  CLUS_4                            10                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(13Q12.11) MUTATED       19     19     35
  DEL PEAK 19(13Q12.11) WILD-TYPE     53     38     42
D42V5, multiclass
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  CLUS_1                            19                              53
  CLUS_2                            19                              38
  CLUS_3                            35                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(13Q12.11) MUTATED        6     52     15
  DEL PEAK 19(13Q12.11) WILD-TYPE     36     71     26
D42V6, multiclass
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                            52                              71
  CLUS_3                            15                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(13Q12.11) MUTATED       19     24     30
  DEL PEAK 19(13Q12.11) WILD-TYPE     55     38     40
D42V7, multiclass
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  CLUS_1                            19                              55
  CLUS_2                            24                              38
  CLUS_3                            30                              40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(13Q12.11) MUTATED        2     14      7     14     14      9
  DEL PEAK 19(13Q12.11) WILD-TYPE     23     24      9     18     20     19
                                 vv
clus                              CLUS_7
  DEL PEAK 19(13Q12.11) MUTATED       13
  DEL PEAK 19(13Q12.11) WILD-TYPE     20
D42V8, multiclass
        clus
vv       DEL PEAK 19(13Q12.11) MUTATED DEL PEAK 19(13Q12.11) WILD-TYPE
  CLUS_1                             2                              23
  CLUS_2                            14                              24
  CLUS_3                             7                               9
  CLUS_4                            14                              18
  CLUS_5                            14                              20
  CLUS_6                             9                              19
  CLUS_7                            13                              20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 20(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED       29     23     29
  DEL PEAK 20(13Q14.2) WILD-TYPE     37     21     67
D43V1, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           29                             37
  CLUS_2                           23                             21
  CLUS_3                           29                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q14.2) MUTATED       10     16     20     19     13      3
  DEL PEAK 20(13Q14.2) WILD-TYPE     41     18     19     19     19      9
D43V2, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           10                             41
  CLUS_2                           16                             18
  CLUS_3                           20                             19
  CLUS_4                           19                             19
  CLUS_5                           13                             19
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED       36     27     15
  DEL PEAK 20(13Q14.2) WILD-TYPE     50     23     50
D43V3, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           36                             50
  CLUS_2                           27                             23
  CLUS_3                           15                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(13Q14.2) MUTATED       46     11     10     11
  DEL PEAK 20(13Q14.2) WILD-TYPE     54     16     11     42
D43V4, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           46                             54
  CLUS_2                           11                             16
  CLUS_3                           10                             11
  CLUS_4                           11                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED       23     19     39
  DEL PEAK 20(13Q14.2) WILD-TYPE     49     38     38
D43V5, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           23                             49
  CLUS_2                           19                             38
  CLUS_3                           39                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED        8     58     15
  DEL PEAK 20(13Q14.2) WILD-TYPE     34     65     26
D43V6, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           58                             65
  CLUS_3                           15                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(13Q14.2) MUTATED       23     24     34
  DEL PEAK 20(13Q14.2) WILD-TYPE     51     38     36
D43V7, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                           23                             51
  CLUS_2                           24                             38
  CLUS_3                           34                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(13Q14.2) MUTATED        3     16      7     15     17      9
  DEL PEAK 20(13Q14.2) WILD-TYPE     22     22      9     17     17     19
                                vv
clus                             CLUS_7
  DEL PEAK 20(13Q14.2) MUTATED       14
  DEL PEAK 20(13Q14.2) WILD-TYPE     19
D43V8, multiclass
        clus
vv       DEL PEAK 20(13Q14.2) MUTATED DEL PEAK 20(13Q14.2) WILD-TYPE
  CLUS_1                            3                             22
  CLUS_2                           16                             22
  CLUS_3                            7                              9
  CLUS_4                           15                             17
  CLUS_5                           17                             17
  CLUS_6                            9                             19
  CLUS_7                           14                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 21(14Q32.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(14Q32.31) MUTATED        7     14     11
  DEL PEAK 21(14Q32.31) WILD-TYPE     59     30     85
D44V1, multiclass
        clus
vv       DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE
  CLUS_1                             7                              59
  CLUS_2                            14                              30
  CLUS_3                            11                              85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(14Q32.31) MUTATED       10      6      2      7      5      2
  DEL PEAK 21(14Q32.31) WILD-TYPE     41     28     37     31     27     10
D44V2, multiclass
        clus
vv       DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE
  CLUS_1                            10                              41
  CLUS_2                             6                              28
  CLUS_3                             2                              37
  CLUS_4                             7                              31
  CLUS_5                             5                              27
  CLUS_6                             2                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(14Q32.31) MUTATED        6      8     17
  DEL PEAK 21(14Q32.31) WILD-TYPE     80     42     48
D44V3, multiclass
        clus
vv       DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE
  CLUS_1                             6                              80
  CLUS_2                             8                              42
  CLUS_3                            17                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(14Q32.31) MUTATED        6      6      5     14
  DEL PEAK 21(14Q32.31) WILD-TYPE     94     21     16     39
D44V4, multiclass
        clus
vv       DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE
  CLUS_1                             6                              94
  CLUS_2                             6                              21
  CLUS_3                             5                              16
  CLUS_4                            14                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(14Q32.31) MUTATED       16      8      8
  DEL PEAK 21(14Q32.31) WILD-TYPE     56     49     69
D44V5, multiclass
        clus
vv       DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE
  CLUS_1                            16                              56
  CLUS_2                             8                              49
  CLUS_3                             8                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(14Q32.31) MUTATED        8     20      4
  DEL PEAK 21(14Q32.31) WILD-TYPE     34    103     37
D44V6, multiclass
        clus
vv       DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE
  CLUS_1                             8                              34
  CLUS_2                            20                             103
  CLUS_3                             4                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(14Q32.31) MUTATED       17     10      5
  DEL PEAK 21(14Q32.31) WILD-TYPE     57     52     65
D44V7, multiclass
        clus
vv       DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE
  CLUS_1                            17                              57
  CLUS_2                            10                              52
  CLUS_3                             5                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(14Q32.31) MUTATED        5      5      1      4      4      9
  DEL PEAK 21(14Q32.31) WILD-TYPE     20     33     15     28     30     19
                                 vv
clus                              CLUS_7
  DEL PEAK 21(14Q32.31) MUTATED        4
  DEL PEAK 21(14Q32.31) WILD-TYPE     29
D44V8, multiclass
        clus
vv       DEL PEAK 21(14Q32.31) MUTATED DEL PEAK 21(14Q32.31) WILD-TYPE
  CLUS_1                             5                              20
  CLUS_2                             5                              33
  CLUS_3                             1                              15
  CLUS_4                             4                              28
  CLUS_5                             4                              30
  CLUS_6                             9                              19
  CLUS_7                             4                              29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 22(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(15Q21.1) MUTATED       12     15     13
  DEL PEAK 22(15Q21.1) WILD-TYPE     54     29     83
D45V1, multiclass
        clus
vv       DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                           15                             29
  CLUS_3                           13                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(15Q21.1) MUTATED       15      2      6     10      5      2
  DEL PEAK 22(15Q21.1) WILD-TYPE     36     32     33     28     27     10
D45V2, multiclass
        clus
vv       DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                            2                             32
  CLUS_3                            6                             33
  CLUS_4                           10                             28
  CLUS_5                            5                             27
  CLUS_6                            2                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(15Q21.1) MUTATED       10     14     16
  DEL PEAK 22(15Q21.1) WILD-TYPE     76     36     49
D45V3, multiclass
        clus
vv       DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE
  CLUS_1                           10                             76
  CLUS_2                           14                             36
  CLUS_3                           16                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(15Q21.1) MUTATED       15      4      6     15
  DEL PEAK 22(15Q21.1) WILD-TYPE     85     23     15     38
D45V4, multiclass
        clus
vv       DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE
  CLUS_1                           15                             85
  CLUS_2                            4                             23
  CLUS_3                            6                             15
  CLUS_4                           15                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(15Q21.1) MUTATED       18      6     16
  DEL PEAK 22(15Q21.1) WILD-TYPE     54     51     61
D45V5, multiclass
        clus
vv       DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE
  CLUS_1                           18                             54
  CLUS_2                            6                             51
  CLUS_3                           16                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(15Q21.1) MUTATED       11     25      4
  DEL PEAK 22(15Q21.1) WILD-TYPE     31     98     37
D45V6, multiclass
        clus
vv       DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                           25                             98
  CLUS_3                            4                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(15Q21.1) MUTATED       18      8     14
  DEL PEAK 22(15Q21.1) WILD-TYPE     56     54     56
D45V7, multiclass
        clus
vv       DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE
  CLUS_1                           18                             56
  CLUS_2                            8                             54
  CLUS_3                           14                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(15Q21.1) MUTATED        5      6      2      8      6      9
  DEL PEAK 22(15Q21.1) WILD-TYPE     20     32     14     24     28     19
                                vv
clus                             CLUS_7
  DEL PEAK 22(15Q21.1) MUTATED        4
  DEL PEAK 22(15Q21.1) WILD-TYPE     29
D45V8, multiclass
        clus
vv       DEL PEAK 22(15Q21.1) MUTATED DEL PEAK 22(15Q21.1) WILD-TYPE
  CLUS_1                            5                             20
  CLUS_2                            6                             32
  CLUS_3                            2                             14
  CLUS_4                            8                             24
  CLUS_5                            6                             28
  CLUS_6                            9                             19
  CLUS_7                            4                             29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 23(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q12.1) MUTATED       11     12     18
  DEL PEAK 23(16Q12.1) WILD-TYPE     55     32     78
D46V1, multiclass
        clus
vv       DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE
  CLUS_1                           11                             55
  CLUS_2                           12                             32
  CLUS_3                           18                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(16Q12.1) MUTATED       15      7      2      6      9      2
  DEL PEAK 23(16Q12.1) WILD-TYPE     36     27     37     32     23     10
D46V2, multiclass
        clus
vv       DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE
  CLUS_1                           15                             36
  CLUS_2                            7                             27
  CLUS_3                            2                             37
  CLUS_4                            6                             32
  CLUS_5                            9                             23
  CLUS_6                            2                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q12.1) MUTATED       13      9     18
  DEL PEAK 23(16Q12.1) WILD-TYPE     73     41     47
D46V3, multiclass
        clus
vv       DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE
  CLUS_1                           13                             73
  CLUS_2                            9                             41
  CLUS_3                           18                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(16Q12.1) MUTATED       17      4      4     15
  DEL PEAK 23(16Q12.1) WILD-TYPE     83     23     17     38
D46V4, multiclass
        clus
vv       DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE
  CLUS_1                           17                             83
  CLUS_2                            4                             23
  CLUS_3                            4                             17
  CLUS_4                           15                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q12.1) MUTATED       19     11     11
  DEL PEAK 23(16Q12.1) WILD-TYPE     53     46     66
D46V5, multiclass
        clus
vv       DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           11                             46
  CLUS_3                           11                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q12.1) MUTATED       15     21      5
  DEL PEAK 23(16Q12.1) WILD-TYPE     27    102     36
D46V6, multiclass
        clus
vv       DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                           21                            102
  CLUS_3                            5                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(16Q12.1) MUTATED       21     11      9
  DEL PEAK 23(16Q12.1) WILD-TYPE     53     51     61
D46V7, multiclass
        clus
vv       DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE
  CLUS_1                           21                             53
  CLUS_2                           11                             51
  CLUS_3                            9                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(16Q12.1) MUTATED       12      5      3      4      9      4
  DEL PEAK 23(16Q12.1) WILD-TYPE     13     33     13     28     25     24
                                vv
clus                             CLUS_7
  DEL PEAK 23(16Q12.1) MUTATED        4
  DEL PEAK 23(16Q12.1) WILD-TYPE     29
D46V8, multiclass
        clus
vv       DEL PEAK 23(16Q12.1) MUTATED DEL PEAK 23(16Q12.1) WILD-TYPE
  CLUS_1                           12                             13
  CLUS_2                            5                             33
  CLUS_3                            3                             13
  CLUS_4                            4                             28
  CLUS_5                            9                             25
  CLUS_6                            4                             24
  CLUS_7                            4                             29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 24(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q23.1) MUTATED       12     12     17
  DEL PEAK 24(16Q23.1) WILD-TYPE     54     32     79
D47V1, multiclass
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                           12                             32
  CLUS_3                           17                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(16Q23.1) MUTATED       17      6      1      7      8      2
  DEL PEAK 24(16Q23.1) WILD-TYPE     34     28     38     31     24     10
D47V2, multiclass
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  CLUS_1                           17                             34
  CLUS_2                            6                             28
  CLUS_3                            1                             38
  CLUS_4                            7                             31
  CLUS_5                            8                             24
  CLUS_6                            2                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q23.1) MUTATED        9     11     20
  DEL PEAK 24(16Q23.1) WILD-TYPE     77     39     45
D47V3, multiclass
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  CLUS_1                            9                             77
  CLUS_2                           11                             39
  CLUS_3                           20                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(16Q23.1) MUTATED       13      5      5     17
  DEL PEAK 24(16Q23.1) WILD-TYPE     87     22     16     36
D47V4, multiclass
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  CLUS_1                           13                             87
  CLUS_2                            5                             22
  CLUS_3                            5                             16
  CLUS_4                           17                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q23.1) MUTATED       19     10     12
  DEL PEAK 24(16Q23.1) WILD-TYPE     53     47     65
D47V5, multiclass
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           10                             47
  CLUS_3                           12                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q23.1) MUTATED       15     24      2
  DEL PEAK 24(16Q23.1) WILD-TYPE     27     99     39
D47V6, multiclass
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  CLUS_1                           15                             27
  CLUS_2                           24                             99
  CLUS_3                            2                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(16Q23.1) MUTATED       22      9     10
  DEL PEAK 24(16Q23.1) WILD-TYPE     52     53     60
D47V7, multiclass
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  CLUS_1                           22                             52
  CLUS_2                            9                             53
  CLUS_3                           10                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(16Q23.1) MUTATED       12      4      1      7      9      5
  DEL PEAK 24(16Q23.1) WILD-TYPE     13     34     15     25     25     23
                                vv
clus                             CLUS_7
  DEL PEAK 24(16Q23.1) MUTATED        3
  DEL PEAK 24(16Q23.1) WILD-TYPE     30
D47V8, multiclass
        clus
vv       DEL PEAK 24(16Q23.1) MUTATED DEL PEAK 24(16Q23.1) WILD-TYPE
  CLUS_1                           12                             13
  CLUS_2                            4                             34
  CLUS_3                            1                             15
  CLUS_4                            7                             25
  CLUS_5                            9                             25
  CLUS_6                            5                             23
  CLUS_7                            3                             30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 25(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(17P12) MUTATED       24     23     21
  DEL PEAK 25(17P12) WILD-TYPE     42     21     75
D48V1, multiclass
        clus
vv       DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE
  CLUS_1                         24                           42
  CLUS_2                         23                           21
  CLUS_3                         21                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(17P12) MUTATED       13     11     12     17      9      6
  DEL PEAK 25(17P12) WILD-TYPE     38     23     27     21     23      6
D48V2, multiclass
        clus
vv       DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE
  CLUS_1                         13                           38
  CLUS_2                         11                           23
  CLUS_3                         12                           27
  CLUS_4                         17                           21
  CLUS_5                          9                           23
  CLUS_6                          6                            6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(17P12) MUTATED       27     21     17
  DEL PEAK 25(17P12) WILD-TYPE     59     29     48
D48V3, multiclass
        clus
vv       DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE
  CLUS_1                         27                           59
  CLUS_2                         21                           29
  CLUS_3                         17                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(17P12) MUTATED       32     11     11     11
  DEL PEAK 25(17P12) WILD-TYPE     68     16     10     42
D48V4, multiclass
        clus
vv       DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE
  CLUS_1                         32                           68
  CLUS_2                         11                           16
  CLUS_3                         11                           10
  CLUS_4                         11                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(17P12) MUTATED       17     19     32
  DEL PEAK 25(17P12) WILD-TYPE     55     38     45
D48V5, multiclass
        clus
vv       DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE
  CLUS_1                         17                           55
  CLUS_2                         19                           38
  CLUS_3                         32                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(17P12) MUTATED        9     44     15
  DEL PEAK 25(17P12) WILD-TYPE     33     79     26
D48V6, multiclass
        clus
vv       DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE
  CLUS_1                          9                           33
  CLUS_2                         44                           79
  CLUS_3                         15                           26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(17P12) MUTATED       18     22     28
  DEL PEAK 25(17P12) WILD-TYPE     56     40     42
D48V7, multiclass
        clus
vv       DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE
  CLUS_1                         18                           56
  CLUS_2                         22                           40
  CLUS_3                         28                           42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 25(17P12) MUTATED        7     12      9     14     11      6      9
  DEL PEAK 25(17P12) WILD-TYPE     18     26      7     18     23     22     24
D48V8, multiclass
        clus
vv       DEL PEAK 25(17P12) MUTATED DEL PEAK 25(17P12) WILD-TYPE
  CLUS_1                          7                           18
  CLUS_2                         12                           26
  CLUS_3                          9                            7
  CLUS_4                         14                           18
  CLUS_5                         11                           23
  CLUS_6                          6                           22
  CLUS_7                          9                           24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 26(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17Q25.3) MUTATED       10     12     13
  DEL PEAK 26(17Q25.3) WILD-TYPE     56     32     83
D49V1, multiclass
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  CLUS_1                           10                             56
  CLUS_2                           12                             32
  CLUS_3                           13                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(17Q25.3) MUTATED        3     10      6     12      3      1
  DEL PEAK 26(17Q25.3) WILD-TYPE     48     24     33     26     29     11
D49V2, multiclass
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  CLUS_1                            3                             48
  CLUS_2                           10                             24
  CLUS_3                            6                             33
  CLUS_4                           12                             26
  CLUS_5                            3                             29
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17Q25.3) MUTATED       14     18      2
  DEL PEAK 26(17Q25.3) WILD-TYPE     72     32     63
D49V3, multiclass
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  CLUS_1                           14                             72
  CLUS_2                           18                             32
  CLUS_3                            2                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(17Q25.3) MUTATED       23      2      7      2
  DEL PEAK 26(17Q25.3) WILD-TYPE     77     25     14     51
D49V4, multiclass
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  CLUS_1                           23                             77
  CLUS_2                            2                             25
  CLUS_3                            7                             14
  CLUS_4                            2                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17Q25.3) MUTATED        4      7     24
  DEL PEAK 26(17Q25.3) WILD-TYPE     68     50     53
D49V5, multiclass
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  CLUS_1                            4                             68
  CLUS_2                            7                             50
  CLUS_3                           24                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17Q25.3) MUTATED        1     28      6
  DEL PEAK 26(17Q25.3) WILD-TYPE     41     95     35
D49V6, multiclass
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  CLUS_1                            1                             41
  CLUS_2                           28                             95
  CLUS_3                            6                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(17Q25.3) MUTATED        4      9     22
  DEL PEAK 26(17Q25.3) WILD-TYPE     70     53     48
D49V7, multiclass
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  CLUS_1                            4                             70
  CLUS_2                            9                             53
  CLUS_3                           22                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(17Q25.3) MUTATED        1      5      3     11      9      2
  DEL PEAK 26(17Q25.3) WILD-TYPE     24     33     13     21     25     26
                                vv
clus                             CLUS_7
  DEL PEAK 26(17Q25.3) MUTATED        4
  DEL PEAK 26(17Q25.3) WILD-TYPE     29
D49V8, multiclass
        clus
vv       DEL PEAK 26(17Q25.3) MUTATED DEL PEAK 26(17Q25.3) WILD-TYPE
  CLUS_1                            1                             24
  CLUS_2                            5                             33
  CLUS_3                            3                             13
  CLUS_4                           11                             21
  CLUS_5                            9                             25
  CLUS_6                            2                             26
  CLUS_7                            4                             29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 27(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q21.2) MUTATED       13     21     23
  DEL PEAK 27(18Q21.2) WILD-TYPE     53     23     73
D50V1, multiclass
        clus
vv       DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE
  CLUS_1                           13                             53
  CLUS_2                           21                             23
  CLUS_3                           23                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(18Q21.2) MUTATED       22      6      7     18      2      2
  DEL PEAK 27(18Q21.2) WILD-TYPE     29     28     32     20     30     10
D50V2, multiclass
        clus
vv       DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE
  CLUS_1                           22                             29
  CLUS_2                            6                             28
  CLUS_3                            7                             32
  CLUS_4                           18                             20
  CLUS_5                            2                             30
  CLUS_6                            2                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q21.2) MUTATED        7     24     25
  DEL PEAK 27(18Q21.2) WILD-TYPE     79     26     40
D50V3, multiclass
        clus
vv       DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE
  CLUS_1                            7                             79
  CLUS_2                           24                             26
  CLUS_3                           25                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(18Q21.2) MUTATED       18      4     11     23
  DEL PEAK 27(18Q21.2) WILD-TYPE     82     23     10     30
D50V4, multiclass
        clus
vv       DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE
  CLUS_1                           18                             82
  CLUS_2                            4                             23
  CLUS_3                           11                             10
  CLUS_4                           23                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q21.2) MUTATED       23      9     25
  DEL PEAK 27(18Q21.2) WILD-TYPE     49     48     52
D50V5, multiclass
        clus
vv       DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE
  CLUS_1                           23                             49
  CLUS_2                            9                             48
  CLUS_3                           25                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q21.2) MUTATED       20     31      6
  DEL PEAK 27(18Q21.2) WILD-TYPE     22     92     35
D50V6, multiclass
        clus
vv       DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE
  CLUS_1                           20                             22
  CLUS_2                           31                             92
  CLUS_3                            6                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(18Q21.2) MUTATED       25      9     23
  DEL PEAK 27(18Q21.2) WILD-TYPE     49     53     47
D50V7, multiclass
        clus
vv       DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE
  CLUS_1                           25                             49
  CLUS_2                            9                             53
  CLUS_3                           23                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(18Q21.2) MUTATED       15     10      2     15      4      7
  DEL PEAK 27(18Q21.2) WILD-TYPE     10     28     14     17     30     21
                                vv
clus                             CLUS_7
  DEL PEAK 27(18Q21.2) MUTATED        4
  DEL PEAK 27(18Q21.2) WILD-TYPE     29
D50V8, multiclass
        clus
vv       DEL PEAK 27(18Q21.2) MUTATED DEL PEAK 27(18Q21.2) WILD-TYPE
  CLUS_1                           15                             10
  CLUS_2                           10                             28
  CLUS_3                            2                             14
  CLUS_4                           15                             17
  CLUS_5                            4                             30
  CLUS_6                            7                             21
  CLUS_7                            4                             29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 28(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19P13.3) MUTATED       21     23     19
  DEL PEAK 28(19P13.3) WILD-TYPE     45     21     77
D51V1, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           21                             45
  CLUS_2                           23                             21
  CLUS_3                           19                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(19P13.3) MUTATED       16      9      4     22      8      4
  DEL PEAK 28(19P13.3) WILD-TYPE     35     25     35     16     24      8
D51V2, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           16                             35
  CLUS_2                            9                             25
  CLUS_3                            4                             35
  CLUS_4                           22                             16
  CLUS_5                            8                             24
  CLUS_6                            4                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19P13.3) MUTATED       16     24     22
  DEL PEAK 28(19P13.3) WILD-TYPE     70     26     43
D51V3, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           16                             70
  CLUS_2                           24                             26
  CLUS_3                           22                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(19P13.3) MUTATED       21     12     13     16
  DEL PEAK 28(19P13.3) WILD-TYPE     79     15      8     37
D51V4, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           21                             79
  CLUS_2                           12                             15
  CLUS_3                           13                              8
  CLUS_4                           16                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19P13.3) MUTATED       27     11     25
  DEL PEAK 28(19P13.3) WILD-TYPE     45     46     52
D51V5, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           27                             45
  CLUS_2                           11                             46
  CLUS_3                           25                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19P13.3) MUTATED       10     46      7
  DEL PEAK 28(19P13.3) WILD-TYPE     32     77     34
D51V6, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           46                             77
  CLUS_3                            7                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(19P13.3) MUTATED       25     14     24
  DEL PEAK 28(19P13.3) WILD-TYPE     49     48     46
D51V7, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                           25                             49
  CLUS_2                           14                             48
  CLUS_3                           24                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(19P13.3) MUTATED        5     14      2     19      8     10
  DEL PEAK 28(19P13.3) WILD-TYPE     20     24     14     13     26     18
                                vv
clus                             CLUS_7
  DEL PEAK 28(19P13.3) MUTATED        5
  DEL PEAK 28(19P13.3) WILD-TYPE     28
D51V8, multiclass
        clus
vv       DEL PEAK 28(19P13.3) MUTATED DEL PEAK 28(19P13.3) WILD-TYPE
  CLUS_1                            5                             20
  CLUS_2                           14                             24
  CLUS_3                            2                             14
  CLUS_4                           19                             13
  CLUS_5                            8                             26
  CLUS_6                           10                             18
  CLUS_7                            5                             28
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 29(19Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.33) MUTATED       12      5      8
  DEL PEAK 29(19Q13.33) WILD-TYPE     54     39     88
D52V1, multiclass
        clus
vv       DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE
  CLUS_1                            12                              54
  CLUS_2                             5                              39
  CLUS_3                             8                              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19Q13.33) MUTATED        9      4      1      6      4      1
  DEL PEAK 29(19Q13.33) WILD-TYPE     42     30     38     32     28     11
D52V2, multiclass
        clus
vv       DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE
  CLUS_1                             9                              42
  CLUS_2                             4                              30
  CLUS_3                             1                              38
  CLUS_4                             6                              32
  CLUS_5                             4                              28
  CLUS_6                             1                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.33) MUTATED        7      8     10
  DEL PEAK 29(19Q13.33) WILD-TYPE     79     42     55
D52V3, multiclass
        clus
vv       DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE
  CLUS_1                             7                              79
  CLUS_2                             8                              42
  CLUS_3                            10                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(19Q13.33) MUTATED       13      2      1      9
  DEL PEAK 29(19Q13.33) WILD-TYPE     87     25     20     44
D52V4, multiclass
        clus
vv       DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE
  CLUS_1                            13                              87
  CLUS_2                             2                              25
  CLUS_3                             1                              20
  CLUS_4                             9                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.33) MUTATED       12      4      9
  DEL PEAK 29(19Q13.33) WILD-TYPE     60     53     68
D52V5, multiclass
        clus
vv       DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE
  CLUS_1                            12                              60
  CLUS_2                             4                              53
  CLUS_3                             9                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.33) MUTATED        6     16      3
  DEL PEAK 29(19Q13.33) WILD-TYPE     36    107     38
D52V6, multiclass
        clus
vv       DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                            16                             107
  CLUS_3                             3                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(19Q13.33) MUTATED       12      6      7
  DEL PEAK 29(19Q13.33) WILD-TYPE     62     56     63
D52V7, multiclass
        clus
vv       DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE
  CLUS_1                            12                              62
  CLUS_2                             6                              56
  CLUS_3                             7                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(19Q13.33) MUTATED        4      8      1      3      4      2
  DEL PEAK 29(19Q13.33) WILD-TYPE     21     30     15     29     30     26
                                 vv
clus                              CLUS_7
  DEL PEAK 29(19Q13.33) MUTATED        3
  DEL PEAK 29(19Q13.33) WILD-TYPE     30
D52V8, multiclass
        clus
vv       DEL PEAK 29(19Q13.33) MUTATED DEL PEAK 29(19Q13.33) WILD-TYPE
  CLUS_1                             4                              21
  CLUS_2                             8                              30
  CLUS_3                             1                              15
  CLUS_4                             3                              29
  CLUS_5                             4                              30
  CLUS_6                             2                              26
  CLUS_7                             3                              30
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 30(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        9      6     12
  DEL PEAK 30(20P12.1) WILD-TYPE     57     38     84
D53V1, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            9                             57
  CLUS_2                            6                             38
  CLUS_3                           12                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(20P12.1) MUTATED        7      3      2      9      5      1
  DEL PEAK 30(20P12.1) WILD-TYPE     44     31     37     29     27     11
D53V2, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            7                             44
  CLUS_2                            3                             31
  CLUS_3                            2                             37
  CLUS_4                            9                             29
  CLUS_5                            5                             27
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        9      8      9
  DEL PEAK 30(20P12.1) WILD-TYPE     77     42     56
D53V3, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            9                             77
  CLUS_2                            8                             42
  CLUS_3                            9                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(20P12.1) MUTATED       13      3      3      7
  DEL PEAK 30(20P12.1) WILD-TYPE     87     24     18     46
D53V4, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                           13                             87
  CLUS_2                            3                             24
  CLUS_3                            3                             18
  CLUS_4                            7                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        6      8     13
  DEL PEAK 30(20P12.1) WILD-TYPE     66     49     64
D53V5, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            6                             66
  CLUS_2                            8                             49
  CLUS_3                           13                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        7     16      4
  DEL PEAK 30(20P12.1) WILD-TYPE     35    107     37
D53V6, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           16                            107
  CLUS_3                            4                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(20P12.1) MUTATED        7      8     12
  DEL PEAK 30(20P12.1) WILD-TYPE     67     54     58
D53V7, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            7                             67
  CLUS_2                            8                             54
  CLUS_3                           12                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(20P12.1) MUTATED        5      6      4      7      2      2
  DEL PEAK 30(20P12.1) WILD-TYPE     20     32     12     25     32     26
                                vv
clus                             CLUS_7
  DEL PEAK 30(20P12.1) MUTATED        1
  DEL PEAK 30(20P12.1) WILD-TYPE     32
D53V8, multiclass
        clus
vv       DEL PEAK 30(20P12.1) MUTATED DEL PEAK 30(20P12.1) WILD-TYPE
  CLUS_1                            5                             20
  CLUS_2                            6                             32
  CLUS_3                            4                             12
  CLUS_4                            7                             25
  CLUS_5                            2                             32
  CLUS_6                            2                             26
  CLUS_7                            1                             32
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 31(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(21Q11.2) MUTATED       12     16     12
  DEL PEAK 31(21Q11.2) WILD-TYPE     54     28     84
D54V1, multiclass
        clus
vv       DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                           16                             28
  CLUS_3                           12                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(21Q11.2) MUTATED       10      4      6     13      4      3
  DEL PEAK 31(21Q11.2) WILD-TYPE     41     30     33     25     28      9
D54V2, multiclass
        clus
vv       DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE
  CLUS_1                           10                             41
  CLUS_2                            4                             30
  CLUS_3                            6                             33
  CLUS_4                           13                             25
  CLUS_5                            4                             28
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(21Q11.2) MUTATED       13     13     13
  DEL PEAK 31(21Q11.2) WILD-TYPE     73     37     52
D54V3, multiclass
        clus
vv       DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE
  CLUS_1                           13                             73
  CLUS_2                           13                             37
  CLUS_3                           13                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(21Q11.2) MUTATED       12      7      9     11
  DEL PEAK 31(21Q11.2) WILD-TYPE     88     20     12     42
D54V4, multiclass
        clus
vv       DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE
  CLUS_1                           12                             88
  CLUS_2                            7                             20
  CLUS_3                            9                             12
  CLUS_4                           11                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(21Q11.2) MUTATED       14     10     16
  DEL PEAK 31(21Q11.2) WILD-TYPE     58     47     61
D54V5, multiclass
        clus
vv       DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE
  CLUS_1                           14                             58
  CLUS_2                           10                             47
  CLUS_3                           16                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(21Q11.2) MUTATED        8     26      6
  DEL PEAK 31(21Q11.2) WILD-TYPE     34     97     35
D54V6, multiclass
        clus
vv       DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           26                             97
  CLUS_3                            6                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(21Q11.2) MUTATED       14     10     16
  DEL PEAK 31(21Q11.2) WILD-TYPE     60     52     54
D54V7, multiclass
        clus
vv       DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE
  CLUS_1                           14                             60
  CLUS_2                           10                             52
  CLUS_3                           16                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(21Q11.2) MUTATED        4      6      3     12      4      7
  DEL PEAK 31(21Q11.2) WILD-TYPE     21     32     13     20     30     21
                                vv
clus                             CLUS_7
  DEL PEAK 31(21Q11.2) MUTATED        4
  DEL PEAK 31(21Q11.2) WILD-TYPE     29
D54V8, multiclass
        clus
vv       DEL PEAK 31(21Q11.2) MUTATED DEL PEAK 31(21Q11.2) WILD-TYPE
  CLUS_1                            4                             21
  CLUS_2                            6                             32
  CLUS_3                            3                             13
  CLUS_4                           12                             20
  CLUS_5                            4                             30
  CLUS_6                            7                             21
  CLUS_7                            4                             29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 32(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       19     17     21
  DEL PEAK 32(22Q13.32) WILD-TYPE     47     27     75
D55V1, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            19                              47
  CLUS_2                            17                              27
  CLUS_3                            21                              75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(22Q13.32) MUTATED       16     11      7     14      8      1
  DEL PEAK 32(22Q13.32) WILD-TYPE     35     23     32     24     24     11
D55V2, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            16                              35
  CLUS_2                            11                              23
  CLUS_3                             7                              32
  CLUS_4                            14                              24
  CLUS_5                             8                              24
  CLUS_6                             1                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       20     17     18
  DEL PEAK 32(22Q13.32) WILD-TYPE     66     33     47
D55V3, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            20                              66
  CLUS_2                            17                              33
  CLUS_3                            18                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(22Q13.32) MUTATED       23      7      9     16
  DEL PEAK 32(22Q13.32) WILD-TYPE     77     20     12     37
D55V4, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            23                              77
  CLUS_2                             7                              20
  CLUS_3                             9                              12
  CLUS_4                            16                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       21     14     22
  DEL PEAK 32(22Q13.32) WILD-TYPE     51     43     55
D55V5, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            21                              51
  CLUS_2                            14                              43
  CLUS_3                            22                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       14     32     11
  DEL PEAK 32(22Q13.32) WILD-TYPE     28     91     30
D55V6, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            14                              28
  CLUS_2                            32                              91
  CLUS_3                            11                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(22Q13.32) MUTATED       22     16     19
  DEL PEAK 32(22Q13.32) WILD-TYPE     52     46     51
D55V7, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                            22                              52
  CLUS_2                            16                              46
  CLUS_3                            19                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(22Q13.32) MUTATED        9      9      3     12      8      9
  DEL PEAK 32(22Q13.32) WILD-TYPE     16     29     13     20     26     19
                                 vv
clus                              CLUS_7
  DEL PEAK 32(22Q13.32) MUTATED        7
  DEL PEAK 32(22Q13.32) WILD-TYPE     26
D55V8, multiclass
        clus
vv       DEL PEAK 32(22Q13.32) MUTATED DEL PEAK 32(22Q13.32) WILD-TYPE
  CLUS_1                             9                              16
  CLUS_2                             9                              29
  CLUS_3                             3                              13
  CLUS_4                            12                              20
  CLUS_5                             8                              26
  CLUS_6                             9                              19
  CLUS_7                             7                              26
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 33(XP11.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP11.3) MUTATED       14     19     16
  DEL PEAK 33(XP11.3) WILD-TYPE     52     25     80
D56V1, multiclass
        clus
vv       DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE
  CLUS_1                          14                            52
  CLUS_2                          19                            25
  CLUS_3                          16                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(XP11.3) MUTATED        7     10      4     17      8      3
  DEL PEAK 33(XP11.3) WILD-TYPE     44     24     35     21     24      9
D56V2, multiclass
        clus
vv       DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE
  CLUS_1                           7                            44
  CLUS_2                          10                            24
  CLUS_3                           4                            35
  CLUS_4                          17                            21
  CLUS_5                           8                            24
  CLUS_6                           3                             9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP11.3) MUTATED       20     18     10
  DEL PEAK 33(XP11.3) WILD-TYPE     66     32     55
D56V3, multiclass
        clus
vv       DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE
  CLUS_1                          20                            66
  CLUS_2                          18                            32
  CLUS_3                          10                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(XP11.3) MUTATED       30      3      7      8
  DEL PEAK 33(XP11.3) WILD-TYPE     70     24     14     45
D56V4, multiclass
        clus
vv       DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE
  CLUS_1                          30                            70
  CLUS_2                           3                            24
  CLUS_3                           7                            14
  CLUS_4                           8                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP11.3) MUTATED       12      7     30
  DEL PEAK 33(XP11.3) WILD-TYPE     60     50     47
D56V5, multiclass
        clus
vv       DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE
  CLUS_1                          12                            60
  CLUS_2                           7                            50
  CLUS_3                          30                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP11.3) MUTATED        5     37      7
  DEL PEAK 33(XP11.3) WILD-TYPE     37     86     34
D56V6, multiclass
        clus
vv       DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE
  CLUS_1                           5                            37
  CLUS_2                          37                            86
  CLUS_3                           7                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(XP11.3) MUTATED       12      9     28
  DEL PEAK 33(XP11.3) WILD-TYPE     62     53     42
D56V7, multiclass
        clus
vv       DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE
  CLUS_1                          12                            62
  CLUS_2                           9                            53
  CLUS_3                          28                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(XP11.3) MUTATED        1     10      5     13     10      6
  DEL PEAK 33(XP11.3) WILD-TYPE     24     28     11     19     24     22
                               vv
clus                            CLUS_7
  DEL PEAK 33(XP11.3) MUTATED        4
  DEL PEAK 33(XP11.3) WILD-TYPE     29
D56V8, multiclass
        clus
vv       DEL PEAK 33(XP11.3) MUTATED DEL PEAK 33(XP11.3) WILD-TYPE
  CLUS_1                           1                            24
  CLUS_2                          10                            28
  CLUS_3                           5                            11
  CLUS_4                          13                            19
  CLUS_5                          10                            24
  CLUS_6                           6                            22
  CLUS_7                           4                            29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 34(XQ21.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ21.33) MUTATED       14     13     16
  DEL PEAK 34(XQ21.33) WILD-TYPE     52     31     80
D57V1, multiclass
        clus
vv       DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE
  CLUS_1                           14                             52
  CLUS_2                           13                             31
  CLUS_3                           16                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XQ21.33) MUTATED        5     13      4     10      8      3
  DEL PEAK 34(XQ21.33) WILD-TYPE     46     21     35     28     24      9
D57V2, multiclass
        clus
vv       DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE
  CLUS_1                            5                             46
  CLUS_2                           13                             21
  CLUS_3                            4                             35
  CLUS_4                           10                             28
  CLUS_5                            8                             24
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ21.33) MUTATED       19     14      9
  DEL PEAK 34(XQ21.33) WILD-TYPE     67     36     56
D57V3, multiclass
        clus
vv       DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE
  CLUS_1                           19                             67
  CLUS_2                           14                             36
  CLUS_3                            9                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(XQ21.33) MUTATED       28      5      4      5
  DEL PEAK 34(XQ21.33) WILD-TYPE     72     22     17     48
D57V4, multiclass
        clus
vv       DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE
  CLUS_1                           28                             72
  CLUS_2                            5                             22
  CLUS_3                            4                             17
  CLUS_4                            5                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ21.33) MUTATED       10     11     22
  DEL PEAK 34(XQ21.33) WILD-TYPE     62     46     55
D57V5, multiclass
        clus
vv       DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE
  CLUS_1                           10                             62
  CLUS_2                           11                             46
  CLUS_3                           22                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ21.33) MUTATED        4     28     11
  DEL PEAK 34(XQ21.33) WILD-TYPE     38     95     30
D57V6, multiclass
        clus
vv       DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           28                             95
  CLUS_3                           11                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(XQ21.33) MUTATED       11     14     18
  DEL PEAK 34(XQ21.33) WILD-TYPE     63     48     52
D57V7, multiclass
        clus
vv       DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE
  CLUS_1                           11                             63
  CLUS_2                           14                             48
  CLUS_3                           18                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(XQ21.33) MUTATED        1      4      6     11     11      4
  DEL PEAK 34(XQ21.33) WILD-TYPE     24     34     10     21     23     24
                                vv
clus                             CLUS_7
  DEL PEAK 34(XQ21.33) MUTATED        6
  DEL PEAK 34(XQ21.33) WILD-TYPE     27
D57V8, multiclass
        clus
vv       DEL PEAK 34(XQ21.33) MUTATED DEL PEAK 34(XQ21.33) WILD-TYPE
  CLUS_1                            1                             24
  CLUS_2                            4                             34
  CLUS_3                            6                             10
  CLUS_4                           11                             21
  CLUS_5                           11                             23
  CLUS_6                            4                             24
  CLUS_7                            6                             27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
