		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2q33.1	87 (20%)	351	0.16498	1	0.1144	1	0.00013	0.0827	0.00469	1	0.04247	1	0.04852	1	0.00091999	0.516	0.01238	1	0.29326	1	0.10547	1	0.1851	1	0.067419	1
amp_5p13.2	84 (19%)	354	0.37901	1	0.191	1	0.00012	0.0767	0.54811	1	0.00471	1	0.91412	1	0.02344	1	0.00355	1	0.72726	1	0.66458	1	0.070759	1	0.61749	1
amp_5q22.3	43 (10%)	395	0.92364	1	1	1	0.0066099	1	0.80523	1	0.32381	1	0.64207	1	0.2988	1	0.04356	1	0.94878	1	0.70164	1	0.22698	1	0.43442	1
amp_6p21.1	94 (21%)	344	0.26419	1	2e-05	0.0135	9.9999e-06	0.00828	0.096699	1	0.50287	1	0.70038	1	0.0034	1	0.00029	0.176	0.70632	1	0.77623	1	0.00081999	0.465	0.25401	1
amp_8p11.23	154 (35%)	284	0.30252	1	0.10974	1	9.9999e-06	0.00828	0.38868	1	0.76423	1	0.62622	1	0.095769	1	0.01326	1	0.36183	1	0.26662	1	0.25508	1	0.98372	1
amp_8p11.21	183 (42%)	255	0.44321	1	0.0188	1	9.9999e-06	0.00828	0.2877	1	0.24345	1	0.02382	1	0.21271	1	0.0069199	1	0.71841	1	0.32057	1	0.26633	1	0.84184	1
amp_8q12.1	228 (52%)	210	0.4895	1	0.0057199	1	9.9999e-06	0.00828	0.0072599	1	0.0099199	1	0.00324	1	0.00025	0.153	4e-05	0.0262	0.38672	1	0.039	1	0.00026	0.159	0.055959	1
amp_8q24.21	251 (57%)	187	0.56654	1	0.02853	1	9.9999e-06	0.00828	0.00054999	0.323	0.0372	1	0.01324	1	0.00088999	0.503	2e-05	0.0135	0.711	1	0.03654	1	0.00058999	0.345	0.04458	1
amp_11p15.5	91 (21%)	347	4e-05	0.0262	0.0062799	1	9.9999e-06	0.00828	2e-05	0.0135	0.00089999	0.508	0.03265	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.10608	1	9.9999e-06	0.00828	0.00218	1	9.9999e-06	0.00828
amp_12p13.33	108 (25%)	330	0.65749	1	0.79145	1	0.050829	1	0.04955	1	0.42346	1	0.8743	1	0.9561	1	0.55811	1	0.51205	1	0.79743	1	0.67291	1	0.69386	1
amp_13q12.13	267 (61%)	171	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.0050299	1	0.01957	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.57411	1	0.80927	1	9.9999e-06	0.00828	0.00096999	0.541
amp_13q22.1	270 (62%)	168	0.00012	0.0767	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.0084499	1	0.04712	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.45596	1	0.99628	1	9.9999e-06	0.00828	0.00388	1
amp_16p11.2	121 (28%)	317	0.00042	0.249	9.9999e-06	0.00828	9.9999e-06	0.00828	0.02558	1	0.02984	1	0.12467	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.8941	1	0.14234	1	0.00050999	0.301	0.00135	0.734
amp_16q12.1	107 (24%)	331	2e-05	0.0135	9.9999e-06	0.00828	9.9999e-06	0.00828	0.056899	1	0.10899	1	0.19011	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.97516	1	0.081819	1	0.00014	0.0886	0.00019	0.118
amp_17p11.2	43 (10%)	395	0.26391	1	0.00403	1	0.01687	1	0.086499	1	0.00431	1	0.060519	1	0.25305	1	0.63848	1	0.54551	1	0.804	1	0.2607	1	0.21473	1
amp_17q12	109 (25%)	329	0.02657	1	0.01362	1	9.9999e-06	0.00828	0.00064999	0.376	0.14042	1	0.00244	1	0.00022	0.136	0.00135	0.734	0.03724	1	0.01481	1	0.03909	1	0.03462	1
amp_17q24.1	102 (23%)	336	0.01626	1	0.0077099	1	9.9999e-06	0.00828	0.00022	0.136	0.060909	1	0.00226	1	4e-05	0.0262	2e-05	0.0135	0.01161	1	0.054149	1	0.054729	1	0.00367	1
amp_19p13.2	71 (16%)	367	0.066929	1	0.054789	1	3e-05	0.0198	0.01235	1	0.67245	1	0.38084	1	0.69281	1	0.00266	1	0.34961	1	0.43648	1	0.01088	1	0.0308	1
amp_19q13.11	90 (21%)	348	0.18381	1	0.0313	1	9.9999e-06	0.00828	0.095839	1	0.03376	1	0.31264	1	0.069319	1	0.00015	0.0942	0.45995	1	0.55766	1	0.02889	1	0.079169	1
amp_20p11.23	215 (49%)	223	0.078699	1	0.00055999	0.328	9.9999e-06	0.00828	0.02918	1	0.0064699	1	0.20251	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.42343	1	0.12535	1	0.00203	1	0.02843	1
amp_20q11.21	314 (72%)	124	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.00067999	0.392	0.00206	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.82067	1	0.0012	0.656	9.9999e-06	0.00828	2e-05	0.0135
amp_20q12	315 (72%)	123	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.00047	0.279	0.00039	0.233	9.9999e-06	0.00828	9.9999e-06	0.00828	0.77534	1	0.00127	0.693	9.9999e-06	0.00828	3e-05	0.0198
amp_20q13.32	317 (72%)	121	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.00057999	0.339	0.00034	0.204	9.9999e-06	0.00828	9.9999e-06	0.00828	0.78949	1	0.00272	1	9.9999e-06	0.00828	2e-05	0.0135
del_1p36.11	165 (38%)	273	0.00016	0.0998	0.0079499	1	9.9999e-06	0.00828	2e-05	0.0135	0.02324	1	0.01774	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.66244	1	0.02033	1	2e-05	0.0135	0.00065999	0.381
del_1p33	121 (28%)	317	0.01527	1	0.55834	1	9.9999e-06	0.00828	0.00022	0.136	0.83047	1	0.48903	1	0.00025	0.153	0.00036	0.216	0.71626	1	0.15332	1	0.00107	0.595	6.9999e-05	0.0454
del_1p13.1	116 (26%)	322	0.086859	1	0.54479	1	9.9999e-06	0.00828	0.01246	1	0.68121	1	0.89176	1	0.00114	0.632	0.00143	0.775	0.8008	1	0.1663	1	0.04402	1	0.00115	0.634
del_1q43	54 (12%)	384	0.062119	1	0.49824	1	9.9999e-06	0.00828	0.03022	1	0.46685	1	0.71767	1	0.00117	0.641	0.00073999	0.424	0.14178	1	0.00071999	0.413	0.00111	0.616	0.11831	1
del_2p21	16 (4%)	422	0.59189	1	0.86485	1	0.61818	1	0.76706	1	0.80965	1	0.71429	1	0.65745	1	0.24631	1	0.091989	1	0.34967	1	0.26927	1	0.65175	1
del_2q32.1	14 (3%)	424	0.95927	1	0.66809	1	0.15716	1	0.26434	1	0.65019	1	0.98645	1	0.03382	1	0.31905	1	0.19362	1	0.20447	1	1	1	0.55749	1
del_3p26.1	68 (16%)	370	0.12142	1	0.38018	1	9.9999e-06	0.00828	0.13403	1	0.74954	1	0.55587	1	0.01891	1	0.063169	1	0.83363	1	0.89712	1	0.00174	0.938	0.13485	1
del_3p14.2	83 (19%)	355	0.55304	1	0.83975	1	0.0191	1	0.27159	1	0.52511	1	0.04165	1	0.11767	1	0.095249	1	0.65222	1	0.69806	1	0.00434	1	0.80533	1
del_3q26.31	46 (11%)	392	0.7063	1	0.93291	1	9.9999e-06	0.00828	0.16818	1	0.5063	1	0.79917	1	0.080709	1	0.2023	1	0.45147	1	0.56995	1	0.0068499	1	0.02526	1
del_4p16.2	133 (30%)	305	0.00062999	0.366	0.0018	0.968	9.9999e-06	0.00828	0.00063999	0.371	0.02709	1	0.16011	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.35585	1	0.44764	1	0.00014	0.0886	0.090299	1
del_4q22.1	144 (33%)	294	4e-04	0.238	0.00361	1	9.9999e-06	0.00828	9.9999e-05	0.0644	0.10428	1	0.15474	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.38839	1	0.17281	1	0.00019	0.118	0.0076399	1
del_4q35.1	152 (35%)	286	0.00095999	0.537	0.0073499	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.01302	1	0.30003	1	4e-05	0.0262	9.9999e-06	0.00828	0.36152	1	0.41541	1	9.9999e-06	0.00828	0.0178	1
del_5q11.2	100 (23%)	338	0.00116	0.637	0.00358	1	9.9999e-06	0.00828	0.0106	1	0.00078999	0.45	0.03367	1	2e-05	0.0135	0.00015	0.0942	0.70747	1	0.56537	1	0.00013	0.0827	0.31519	1
del_5q21.3	125 (29%)	313	0.066739	1	0.01925	1	9.9999e-06	0.00828	0.01386	1	0.04582	1	0.26002	1	0.00026	0.159	6.9999e-05	0.0454	0.96629	1	0.93188	1	0.01835	1	0.33965	1
del_5q23.1	116 (26%)	322	0.04991	1	0.01213	1	9.9999e-06	0.00828	0.02035	1	0.02475	1	0.34815	1	7.9999e-05	0.0517	0.00012	0.0767	0.86514	1	0.39371	1	0.00229	1	0.21615	1
del_6p25.3	55 (13%)	383	0.85111	1	0.73623	1	0.00223	1	0.03052	1	0.04325	1	0.57422	1	0.93807	1	0.79747	1	0.66847	1	0.93886	1	0.17366	1	0.8092	1
del_6q26	60 (14%)	378	0.58519	1	0.40058	1	0.0373	1	0.47422	1	0.081769	1	0.22325	1	0.086409	1	0.38235	1	0.6987	1	0.93934	1	0.44749	1	0.38392	1
del_7q31.1	12 (3%)	426	1	1	0.59863	1	0.32104	1	0.59918	1	0.16424	1	0.46217	1	0.20129	1	0.22333	1	0.79573	1	0.82949	1	0.62762	1	0.16577	1
del_8p23.3	182 (42%)	256	0.01131	1	0.00019	0.118	9.9999e-06	0.00828	2e-05	0.0135	0.00465	1	0.0079799	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.21693	1	0.051729	1	9.9999e-06	0.00828	0.01971	1
del_8p22	197 (45%)	241	0.00259	1	0.00014	0.0886	9.9999e-06	0.00828	2e-05	0.0135	0.0074099	1	0.00076999	0.44	9.9999e-06	0.00828	9.9999e-06	0.00828	0.4834	1	0.01785	1	9.9999e-06	0.00828	0.01294	1
del_8p11.21	46 (11%)	392	0.02522	1	0.11797	1	9.9999e-06	0.00828	0.15634	1	0.04355	1	0.16702	1	0.066949	1	0.0060899	1	0.35831	1	0.04758	1	0.066069	1	0.12307	1
del_9p21.3	60 (14%)	378	0.45223	1	0.088769	1	0.00015	0.0942	0.071739	1	0.82138	1	0.40825	1	0.02244	1	0.0054999	1	0.61777	1	0.25511	1	0.04767	1	0.84908	1
del_10p15.3	77 (18%)	361	0.11491	1	0.10393	1	9.9999e-06	0.00828	0.00064999	0.376	0.02224	1	0.14279	1	0.04042	1	0.00019	0.118	0.45531	1	0.18046	1	0.00131	0.714	0.0071799	1
del_10q21.1	92 (21%)	346	0.00317	1	0.02779	1	9.9999e-06	0.00828	0.0099599	1	0.071019	1	0.25903	1	0.00077999	0.445	9.9999e-05	0.0644	0.75241	1	0.49061	1	0.00114	0.632	0.057889	1
del_10q23.31	105 (24%)	333	0.099109	1	0.063269	1	9.9999e-06	0.00828	0.00328	1	0.14749	1	0.47321	1	0.00366	1	0.00015	0.0942	0.58037	1	0.13515	1	0.00022	0.136	5e-04	0.296
del_10q25.2	105 (24%)	333	0.1253	1	0.01825	1	9.9999e-06	0.00828	9.9999e-05	0.0644	0.0069899	1	0.087189	1	0.00050999	0.301	2e-05	0.0135	0.9624	1	0.49002	1	9.9999e-06	0.00828	0.00194	1
del_12p13.2	58 (13%)	380	0.01027	1	0.00339	1	9.9999e-06	0.00828	0.0089399	1	0.31008	1	0.91799	1	0.00081999	0.465	4e-05	0.0262	0.79276	1	0.35521	1	0.0051599	1	0.0089199	1
del_13q14.13	19 (4%)	419	0.27634	1	0.86425	1	0.02531	1	0.22212	1	0.23979	1	0.2518	1	0.57057	1	0.66129	1	0.68776	1	0.94303	1	0.63494	1	0.9259	1
del_14q31.1	145 (33%)	293	9.9999e-06	0.00828	7.9999e-05	0.0517	9.9999e-06	0.00828	2e-05	0.0135	0.00032	0.193	0.01925	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.33368	1	0.02182	1	5e-05	0.0325	0.01558	1
del_15q11.2	171 (39%)	267	0.00050999	0.301	0.00089999	0.508	9.9999e-06	0.00828	0.00060999	0.356	0.02226	1	0.063149	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.98069	1	0.77593	1	2e-05	0.0135	0.0070399	1
del_15q15.2	166 (38%)	272	0.00187	1	0.00060999	0.356	9.9999e-06	0.00828	3e-04	0.182	0.0093699	1	0.02591	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.9227	1	0.55521	1	9.9999e-05	0.0644	0.00261	1
del_15q21.1	163 (37%)	275	0.0189	1	0.01471	1	9.9999e-06	0.00828	0.00114	0.632	0.0093599	1	0.054889	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.88559	1	0.67667	1	0.00014	0.0886	0.00361	1
del_15q22.33	158 (36%)	280	0.00017	0.106	0.00035	0.21	9.9999e-06	0.00828	3e-05	0.0198	0.04374	1	0.059249	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.66355	1	0.7286	1	5e-05	0.0325	0.00027	0.164
del_16p13.3	55 (13%)	383	0.22976	1	0.062959	1	0.02207	1	0.060279	1	0.3943	1	0.51649	1	0.23738	1	0.25793	1	0.85226	1	0.69805	1	0.149	1	0.68908	1
del_16q23.1	59 (13%)	379	0.26998	1	0.0054099	1	0.17212	1	0.8508	1	0.13948	1	0.61276	1	0.2072	1	0.01336	1	0.52528	1	0.46364	1	0.86051	1	0.91603	1
del_17p12	246 (56%)	192	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.01272	1	0.00115	0.634	9.9999e-06	0.00828	9.9999e-06	0.00828	0.66705	1	0.0221	1	9.9999e-06	0.00828	2e-05	0.0135
del_17q24.3	65 (15%)	373	0.094729	1	0.51252	1	0.0171	1	0.01091	1	0.82699	1	0.31445	1	0.00070999	0.408	0.054979	1	0.70831	1	0.96984	1	0.01109	1	0.13818	1
del_18p11.31	237 (54%)	201	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.00090999	0.511	0.01028	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.8376	1	0.01082	1	9.9999e-06	0.00828	5e-05	0.0325
del_18q12.2	263 (60%)	175	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.00234	1	0.00197	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.94248	1	0.01837	1	9.9999e-06	0.00828	9.9999e-06	0.00828
del_18q21.2	277 (63%)	161	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.00102	0.568	0.00052999	0.312	9.9999e-06	0.00828	9.9999e-06	0.00828	0.44396	1	0.03444	1	9.9999e-06	0.00828	0.00016	0.0998
del_18q22.1	277 (63%)	161	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	9.9999e-06	0.00828	0.00238	1	0.00039	0.233	9.9999e-06	0.00828	9.9999e-06	0.00828	0.58201	1	0.072749	1	9.9999e-06	0.00828	0.00032	0.193
del_19p13.3	63 (14%)	375	0.12988	1	0.12475	1	0.00033	0.199	0.11047	1	0.98147	1	0.20928	1	0.00371	1	0.00018	0.112	0.65143	1	0.0085499	1	0.02662	1	0.42694	1
del_20p12.1	124 (28%)	314	0.01781	1	0.03136	1	9.9999e-06	0.00828	0.00143	0.775	0.68613	1	0.078929	1	0.00272	1	0.00092999	0.521	0.45247	1	0.070489	1	0.064719	1	0.078939	1
del_20p12.1	124 (28%)	314	0.01799	1	0.03113	1	9.9999e-06	0.00828	0.00159	0.859	0.68491	1	0.079329	1	0.00235	1	0.00075999	0.435	0.45501	1	0.069389	1	0.067049	1	0.078589	1
del_21q11.2	137 (31%)	301	0.01581	1	0.068889	1	9.9999e-06	0.00828	0.050919	1	0.16122	1	0.81889	1	0.00014	0.0886	0.00011	0.0704	0.93504	1	0.1278	1	0.00013	0.0827	0.063349	1
del_22q13.32	154 (35%)	284	4e-04	0.238	0.00031	0.188	9.9999e-06	0.00828	0.00079999	0.454	0.11786	1	0.245	1	9.9999e-06	0.00828	9.9999e-06	0.00828	0.34475	1	0.75068	1	9.9999e-06	0.00828	0.0084999	1
