[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTCOAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COAD-TP/10668133/COAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COAD-TP/10013691/transformed.cor.cli.txt"

nPatients in clinical file=447, in cluster file=438, common to both=438
[1]  69 438
[1] "AMP PEAK  1(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE 
                           87                           351 
  AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE 
                           87                           351 
[1] "AMP PEAK  2(5P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE 
                           84                           354 
  AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE 
                           84                           354 
[1] "AMP PEAK  3(5Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           43                           395 
  AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE 
                           43                           395 
[1] "AMP PEAK  4(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           94                           344 
  AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE 
                           94                           344 
[1] "AMP PEAK  5(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                           154                            284 
  AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE 
                           154                            284 
[1] "AMP PEAK  6(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                           183                            255 
  AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE 
                           183                            255 
[1] "AMP PEAK  7(8Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE 
                          228                           210 
  AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE 
                          228                           210 
[1] "AMP PEAK  8(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                           251                            187 
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                           251                            187 
[1] "AMP PEAK  9(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            91                            347 
  AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE 
                            91                            347 
[1] "AMP PEAK 10(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                            108                             330 
  AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE 
                            108                             330 
[1] "AMP PEAK 11(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE 
                            267                             171 
  AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE 
                            267                             171 
[1] "AMP PEAK 12(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE 
                           270                            168 
  AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE 
                           270                            168 
[1] "AMP PEAK 13(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE 
                           121                            317 
  AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE 
                           121                            317 
[1] "AMP PEAK 14(16Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE 
                           107                            331 
  AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE 
                           107                            331 
[1] "AMP PEAK 15(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE 
                            43                            395 
  AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE 
                            43                            395 
[1] "AMP PEAK 16(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE 
                         109                          329 
  AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE 
                         109                          329 
[1] "AMP PEAK 17(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE 
                           102                            336 
  AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE 
                           102                            336 
[1] "AMP PEAK 18(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE 
                            71                            367 
  AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE 
                            71                            367 
[1] "AMP PEAK 19(19Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE 
                             90                             348 
  AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE 
                             90                             348 
[1] "AMP PEAK 20(20P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE 
                            215                             223 
  AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE 
                            215                             223 
[1] "AMP PEAK 21(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            314                             124 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                            314                             124 
[1] "AMP PEAK 22(20Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE 
                         315                          123 
  AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE 
                         315                          123 
[1] "AMP PEAK 23(20Q13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE 
                            317                             121 
  AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE 
                            317                             121 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           165                            273 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           165                            273 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        121                         317 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        121                         317 
[1] "DEL PEAK  3(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE 
                          116                           322 
  DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE 
                          116                           322 
[1] "DEL PEAK  4(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE 
                         54                         384 
  DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE 
                         54                         384 
[1] "DEL PEAK  5(2P21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                         16                         422 
  DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE 
                         16                         422 
[1] "DEL PEAK  6(2Q32.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE 
                           14                           424 
  DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE 
                           14                           424 
[1] "DEL PEAK  7(3P26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                           68                           370 
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                           68                           370 
[1] "DEL PEAK  8(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           83                           355 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           83                           355 
[1] "DEL PEAK  9(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            46                            392 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            46                            392 
[1] "DEL PEAK 10(4P16.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE 
                          133                           305 
  DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE 
                          133                           305 
[1] "DEL PEAK 11(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                          144                           294 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                          144                           294 
[1] "DEL PEAK 12(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                          152                           286 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                          152                           286 
[1] "DEL PEAK 13(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                          100                           338 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                          100                           338 
[1] "DEL PEAK 14(5Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE 
                          125                           313 
  DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE 
                          125                           313 
[1] "DEL PEAK 15(5Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE 
                          116                           322 
  DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE 
                          116                           322 
[1] "DEL PEAK 16(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                           55                           383 
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                           55                           383 
[1] "DEL PEAK 17(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                         60                         378 
  DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE 
                         60                         378 
[1] "DEL PEAK 18(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                           12                           426 
  DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE 
                           12                           426 
[1] "DEL PEAK 19(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE 
                          182                           256 
  DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE 
                          182                           256 
[1] "DEL PEAK 20(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE 
                        197                         241 
  DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE 
                        197                         241 
[1] "DEL PEAK 21(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE 
                            46                            392 
  DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE 
                            46                            392 
[1] "DEL PEAK 22(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE 
                           60                           378 
  DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE 
                           60                           378 
[1] "DEL PEAK 23(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE 
                            77                            361 
  DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE 
                            77                            361 
[1] "DEL PEAK 24(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE 
                            92                            346 
  DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE 
                            92                            346 
[1] "DEL PEAK 25(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                            105                             333 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                            105                             333 
[1] "DEL PEAK 26(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE 
                           105                            333 
  DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE 
                           105                            333 
[1] "DEL PEAK 27(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE 
                            58                            380 
  DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE 
                            58                            380 
[1] "DEL PEAK 28(13Q14.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE 
                             19                             419 
  DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE 
                             19                             419 
[1] "DEL PEAK 29(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE 
                           145                            293 
  DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE 
                           145                            293 
[1] "DEL PEAK 30(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE 
                           171                            267 
  DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE 
                           171                            267 
[1] "DEL PEAK 31(15Q15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE 
                           166                            272 
  DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE 
                           166                            272 
[1] "DEL PEAK 32(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE 
                           163                            275 
  DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE 
                           163                            275 
[1] "DEL PEAK 33(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE 
                            158                             280 
  DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE 
                            158                             280 
[1] "DEL PEAK 34(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            55                            383 
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            55                            383 
[1] "DEL PEAK 35(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                            59                            379 
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                            59                            379 
[1] "DEL PEAK 36(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE 
                         246                          192 
  DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE 
                         246                          192 
[1] "DEL PEAK 37(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE 
                            65                            373 
  DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE 
                            65                            373 
[1] "DEL PEAK 38(18P11.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE 
                            237                             201 
  DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE 
                            237                             201 
[1] "DEL PEAK 39(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE 
                           263                            175 
  DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE 
                           263                            175 
[1] "DEL PEAK 40(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE 
                           277                            161 
  DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE 
                           277                            161 
[1] "DEL PEAK 41(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE 
                           277                            161 
  DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE 
                           277                            161 
[1] "DEL PEAK 42(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE 
                            63                            375 
  DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE 
                            63                            375 
[1] "DEL PEAK 43(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE 
                           124                            314 
  DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE 
                           124                            314 
[1] "DEL PEAK 44(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE 
                           124                            314 
  DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE 
                           124                            314 
[1] "DEL PEAK 45(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE 
                           137                            301 
  DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE 
                           137                            301 
[1] "DEL PEAK 46(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE 
                            154                             284 
  DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE 
                            154                             284 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 438 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 438 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED        4     14      2      5
  AMP PEAK  1(2Q33.1) WILD-TYPE     31     47     27     16
D1V1, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           4                            31
  CLUS_2                          14                            47
  CLUS_3                           2                            27
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED        4     12      9
  AMP PEAK  1(2Q33.1) WILD-TYPE     38     60     23
D1V2, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                          12                            60
  CLUS_3                           9                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED       13     42     21     11
  AMP PEAK  1(2Q33.1) WILD-TYPE     24    113    171     43
D1V3, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          13                            24
  CLUS_2                          42                           113
  CLUS_3                          21                           171
  CLUS_4                          11                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       36     11     14
  AMP PEAK  1(2Q33.1) WILD-TYPE     82     81     57
D1V4, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          36                            82
  CLUS_2                          11                            81
  CLUS_3                          14                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED       21     27      5     10
  AMP PEAK  1(2Q33.1) WILD-TYPE     57    100     21     84
D1V5, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          21                            57
  CLUS_2                          27                           100
  CLUS_3                           5                            21
  CLUS_4                          10                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(2Q33.1) MUTATED       16     11     16      9      9      2
  AMP PEAK  1(2Q33.1) WILD-TYPE     43     37     40     59     59     24
D1V6, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          16                            43
  CLUS_2                          11                            37
  CLUS_3                          16                            40
  CLUS_4                           9                            59
  CLUS_5                           9                            59
  CLUS_6                           2                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q33.1) MUTATED        8     35     14      7     20
  AMP PEAK  1(2Q33.1) WILD-TYPE     25     78     57     83     96
D1V7, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                           8                            25
  CLUS_2                          35                            78
  CLUS_3                          14                            57
  CLUS_4                           7                            83
  CLUS_5                          20                            96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(2Q33.1) MUTATED       19     26     11     26      2
  AMP PEAK  1(2Q33.1) WILD-TYPE     56     70     77    102     34
D1V8, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          19                            56
  CLUS_2                          26                            70
  CLUS_3                          11                            77
  CLUS_4                          26                           102
  CLUS_5                           2                            34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       37     13     28
  AMP PEAK  1(2Q33.1) WILD-TYPE    123     52    144
D1V9, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          37                           123
  CLUS_2                          13                            52
  CLUS_3                          28                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED       25     11     22     20
  AMP PEAK  1(2Q33.1) WILD-TYPE    110     39     55    115
D1V10, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          25                           110
  CLUS_2                          11                            39
  CLUS_3                          22                            55
  CLUS_4                          20                           115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(2Q33.1) MUTATED       20     12     17
  AMP PEAK  1(2Q33.1) WILD-TYPE     59     66     46
D1V11, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          20                            59
  CLUS_2                          12                            66
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(2Q33.1) MUTATED       15      6     20      8
  AMP PEAK  1(2Q33.1) WILD-TYPE     51     45     63     12
D1V12, multiclass
        clus
vv       AMP PEAK  1(2Q33.1) MUTATED AMP PEAK  1(2Q33.1) WILD-TYPE
  CLUS_1                          15                            51
  CLUS_2                           6                            45
  CLUS_3                          20                            63
  CLUS_4                           8                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(5P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED        8     16      3      5
  AMP PEAK  2(5P13.2) WILD-TYPE     27     45     26     16
D2V1, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          16                            45
  CLUS_3                           3                            26
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED        8     13     11
  AMP PEAK  2(5P13.2) WILD-TYPE     34     59     21
D2V2, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          13                            59
  CLUS_3                          11                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED       12     42     20     10
  AMP PEAK  2(5P13.2) WILD-TYPE     25    113    172     44
D2V3, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          12                            25
  CLUS_2                          42                           113
  CLUS_3                          20                           172
  CLUS_4                          10                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       18     19     14
  AMP PEAK  2(5P13.2) WILD-TYPE    100     73     57
D2V4, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          18                           100
  CLUS_2                          19                            73
  CLUS_3                          14                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED       16     19     12     14
  AMP PEAK  2(5P13.2) WILD-TYPE     62    108     14     80
D2V5, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          16                            62
  CLUS_2                          19                           108
  CLUS_3                          12                            14
  CLUS_4                          14                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(5P13.2) MUTATED       13      8     11     14     10      5
  AMP PEAK  2(5P13.2) WILD-TYPE     46     40     45     54     58     21
D2V6, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          13                            46
  CLUS_2                           8                            40
  CLUS_3                          11                            45
  CLUS_4                          14                            54
  CLUS_5                          10                            58
  CLUS_6                           5                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(5P13.2) MUTATED        7     23     13      8     31
  AMP PEAK  2(5P13.2) WILD-TYPE     26     90     58     82     85
D2V7, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                           7                            26
  CLUS_2                          23                            90
  CLUS_3                          13                            58
  CLUS_4                           8                            82
  CLUS_5                          31                            85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(5P13.2) MUTATED       22     14      9     33      4
  AMP PEAK  2(5P13.2) WILD-TYPE     53     82     79     95     32
D2V8, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          22                            53
  CLUS_2                          14                            82
  CLUS_3                           9                            79
  CLUS_4                          33                            95
  CLUS_5                           4                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       28     14     35
  AMP PEAK  2(5P13.2) WILD-TYPE    132     51    137
D2V9, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          28                           132
  CLUS_2                          14                            51
  CLUS_3                          35                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED       23      9     14     31
  AMP PEAK  2(5P13.2) WILD-TYPE    112     41     63    104
D2V10, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          23                           112
  CLUS_2                           9                            41
  CLUS_3                          14                            63
  CLUS_4                          31                           104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(5P13.2) MUTATED       18      8     14
  AMP PEAK  2(5P13.2) WILD-TYPE     61     70     49
D2V11, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          18                            61
  CLUS_2                           8                            70
  CLUS_3                          14                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(5P13.2) MUTATED       11      7     17      5
  AMP PEAK  2(5P13.2) WILD-TYPE     55     44     66     15
D2V12, multiclass
        clus
vv       AMP PEAK  2(5P13.2) MUTATED AMP PEAK  2(5P13.2) WILD-TYPE
  CLUS_1                          11                            55
  CLUS_2                           7                            44
  CLUS_3                          17                            66
  CLUS_4                           5                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(5Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED        2      6      2      2
  AMP PEAK  3(5Q22.3) WILD-TYPE     33     55     27     19
D3V1, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           2                            33
  CLUS_2                           6                            55
  CLUS_3                           2                            27
  CLUS_4                           2                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED        3      6      3
  AMP PEAK  3(5Q22.3) WILD-TYPE     39     66     29
D3V2, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                           6                            66
  CLUS_3                           3                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED        7     22     10      4
  AMP PEAK  3(5Q22.3) WILD-TYPE     30    133    182     50
D3V3, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           7                            30
  CLUS_2                          22                           133
  CLUS_3                          10                           182
  CLUS_4                           4                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED       14     10      6
  AMP PEAK  3(5Q22.3) WILD-TYPE    104     82     65
D3V4, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          14                           104
  CLUS_2                          10                            82
  CLUS_3                           6                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED        5     10      3     13
  AMP PEAK  3(5Q22.3) WILD-TYPE     73    117     23     81
D3V5, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           5                            73
  CLUS_2                          10                           117
  CLUS_3                           3                            23
  CLUS_4                          13                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(5Q22.3) MUTATED        4      3      8      5      8      3
  AMP PEAK  3(5Q22.3) WILD-TYPE     55     45     48     63     60     23
D3V6, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           4                            55
  CLUS_2                           3                            45
  CLUS_3                           8                            48
  CLUS_4                           5                            63
  CLUS_5                           8                            60
  CLUS_6                           3                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5Q22.3) MUTATED        3     14      6      4     14
  AMP PEAK  3(5Q22.3) WILD-TYPE     30     99     65     86    102
D3V7, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                          14                            99
  CLUS_3                           6                            65
  CLUS_4                           4                            86
  CLUS_5                          14                           102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5Q22.3) MUTATED       11     11      2     14      3
  AMP PEAK  3(5Q22.3) WILD-TYPE     64     85     86    114     33
D3V8, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          11                            64
  CLUS_2                          11                            85
  CLUS_3                           2                            86
  CLUS_4                          14                           114
  CLUS_5                           3                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED       16      7     17
  AMP PEAK  3(5Q22.3) WILD-TYPE    144     58    155
D3V9, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          16                           144
  CLUS_2                           7                            58
  CLUS_3                          17                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED       13      4      6     17
  AMP PEAK  3(5Q22.3) WILD-TYPE    122     46     71    118
D3V10, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          13                           122
  CLUS_2                           4                            46
  CLUS_3                           6                            71
  CLUS_4                          17                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5Q22.3) MUTATED       10      4      7
  AMP PEAK  3(5Q22.3) WILD-TYPE     69     74     56
D3V11, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                          10                            69
  CLUS_2                           4                            74
  CLUS_3                           7                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5Q22.3) MUTATED        8      5      5      3
  AMP PEAK  3(5Q22.3) WILD-TYPE     58     46     78     17
D3V12, multiclass
        clus
vv       AMP PEAK  3(5Q22.3) MUTATED AMP PEAK  3(5Q22.3) WILD-TYPE
  CLUS_1                           8                            58
  CLUS_2                           5                            46
  CLUS_3                           5                            78
  CLUS_4                           3                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED        5     16      3      5
  AMP PEAK  4(6P21.1) WILD-TYPE     30     45     26     16
D4V1, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           5                            30
  CLUS_2                          16                            45
  CLUS_3                           3                            26
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED        3     10     16
  AMP PEAK  4(6P21.1) WILD-TYPE     39     62     16
D4V2, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           3                            39
  CLUS_2                          10                            62
  CLUS_3                          16                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       10     57     14     13
  AMP PEAK  4(6P21.1) WILD-TYPE     27     98    178     41
D4V3, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          10                            27
  CLUS_2                          57                            98
  CLUS_3                          14                           178
  CLUS_4                          13                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       34     15     15
  AMP PEAK  4(6P21.1) WILD-TYPE     84     77     56
D4V4, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          34                            84
  CLUS_2                          15                            77
  CLUS_3                          15                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       21     28      7     17
  AMP PEAK  4(6P21.1) WILD-TYPE     57     99     19     77
D4V5, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          21                            57
  CLUS_2                          28                            99
  CLUS_3                           7                            19
  CLUS_4                          17                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(6P21.1) MUTATED       17      9     13     17     13      4
  AMP PEAK  4(6P21.1) WILD-TYPE     42     39     43     51     55     22
D4V6, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          17                            42
  CLUS_2                           9                            39
  CLUS_3                          13                            43
  CLUS_4                          17                            51
  CLUS_5                          13                            55
  CLUS_6                           4                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(6P21.1) MUTATED        7     30     18      7     30
  AMP PEAK  4(6P21.1) WILD-TYPE     26     83     53     83     86
D4V7, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                           7                            26
  CLUS_2                          30                            83
  CLUS_3                          18                            53
  CLUS_4                           7                            83
  CLUS_5                          30                            86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(6P21.1) MUTATED       27     20      9     33      3
  AMP PEAK  4(6P21.1) WILD-TYPE     48     76     79     95     33
D4V8, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          27                            48
  CLUS_2                          20                            76
  CLUS_3                           9                            79
  CLUS_4                          33                            95
  CLUS_5                           3                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       37     15     34
  AMP PEAK  4(6P21.1) WILD-TYPE    123     50    138
D4V9, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          37                           123
  CLUS_2                          15                            50
  CLUS_3                          34                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       30     13     17     26
  AMP PEAK  4(6P21.1) WILD-TYPE    105     37     60    109
D4V10, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          30                           105
  CLUS_2                          13                            37
  CLUS_3                          17                            60
  CLUS_4                          26                           109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(6P21.1) MUTATED       29      9     13
  AMP PEAK  4(6P21.1) WILD-TYPE     50     69     50
D4V11, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          29                            50
  CLUS_2                           9                            69
  CLUS_3                          13                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(6P21.1) MUTATED       20      9     16      6
  AMP PEAK  4(6P21.1) WILD-TYPE     46     42     67     14
D4V12, multiclass
        clus
vv       AMP PEAK  4(6P21.1) MUTATED AMP PEAK  4(6P21.1) WILD-TYPE
  CLUS_1                          20                            46
  CLUS_2                           9                            42
  CLUS_3                          16                            67
  CLUS_4                           6                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.23) MUTATED        7     23      8      5
  AMP PEAK  5(8P11.23) WILD-TYPE     28     38     21     16
D5V1, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            7                             28
  CLUS_2                           23                             38
  CLUS_3                            8                             21
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.23) MUTATED        9     20     14
  AMP PEAK  5(8P11.23) WILD-TYPE     33     52     18
D5V2, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                           20                             52
  CLUS_3                           14                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.23) MUTATED       23     43     43     45
  AMP PEAK  5(8P11.23) WILD-TYPE     14    112    149      9
D5V3, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           23                             14
  CLUS_2                           43                            112
  CLUS_3                           43                            149
  CLUS_4                           45                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.23) MUTATED       51     32     25
  AMP PEAK  5(8P11.23) WILD-TYPE     67     60     46
D5V4, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           51                             67
  CLUS_2                           32                             60
  CLUS_3                           25                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.23) MUTATED       28     43      9     27
  AMP PEAK  5(8P11.23) WILD-TYPE     50     84     17     67
D5V5, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           28                             50
  CLUS_2                           43                             84
  CLUS_3                            9                             17
  CLUS_4                           27                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8P11.23) MUTATED       22     19     20     18     21      7
  AMP PEAK  5(8P11.23) WILD-TYPE     37     29     36     50     47     19
D5V6, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           22                             37
  CLUS_2                           19                             29
  CLUS_3                           20                             36
  CLUS_4                           18                             50
  CLUS_5                           21                             47
  CLUS_6                            7                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.23) MUTATED       10     52     22     30     35
  AMP PEAK  5(8P11.23) WILD-TYPE     23     61     49     60     81
D5V7, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           52                             61
  CLUS_3                           22                             49
  CLUS_4                           30                             60
  CLUS_5                           35                             81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(8P11.23) MUTATED       29     45     28     41      6
  AMP PEAK  5(8P11.23) WILD-TYPE     46     51     60     87     30
D5V8, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           29                             46
  CLUS_2                           45                             51
  CLUS_3                           28                             60
  CLUS_4                           41                             87
  CLUS_5                            6                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.23) MUTATED       63     20     57
  AMP PEAK  5(8P11.23) WILD-TYPE     97     45    115
D5V9, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           63                             97
  CLUS_2                           20                             45
  CLUS_3                           57                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.23) MUTATED       53     20     28     39
  AMP PEAK  5(8P11.23) WILD-TYPE     82     30     49     96
D5V10, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           53                             82
  CLUS_2                           20                             30
  CLUS_3                           28                             49
  CLUS_4                           39                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8P11.23) MUTATED       34     24     25
  AMP PEAK  5(8P11.23) WILD-TYPE     45     54     38
D5V11, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           34                             45
  CLUS_2                           24                             54
  CLUS_3                           25                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8P11.23) MUTATED       24     20     31      8
  AMP PEAK  5(8P11.23) WILD-TYPE     42     31     52     12
D5V12, multiclass
        clus
vv       AMP PEAK  5(8P11.23) MUTATED AMP PEAK  5(8P11.23) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                           20                             31
  CLUS_3                           31                             52
  CLUS_4                            8                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.21) MUTATED        9     25     11      9
  AMP PEAK  6(8P11.21) WILD-TYPE     26     36     18     12
D6V1, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                           25                             36
  CLUS_3                           11                             18
  CLUS_4                            9                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.21) MUTATED       10     26     18
  AMP PEAK  6(8P11.21) WILD-TYPE     32     46     14
D6V2, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           26                             46
  CLUS_3                           18                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.21) MUTATED       25     62     47     49
  AMP PEAK  6(8P11.21) WILD-TYPE     12     93    145      5
D6V3, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           25                             12
  CLUS_2                           62                             93
  CLUS_3                           47                            145
  CLUS_4                           49                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.21) MUTATED       57     35     34
  AMP PEAK  6(8P11.21) WILD-TYPE     61     57     37
D6V4, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           57                             61
  CLUS_2                           35                             57
  CLUS_3                           34                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.21) MUTATED       38     45     11     34
  AMP PEAK  6(8P11.21) WILD-TYPE     40     82     15     60
D6V5, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           38                             40
  CLUS_2                           45                             82
  CLUS_3                           11                             15
  CLUS_4                           34                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8P11.21) MUTATED       34     21     20     19     25      9
  AMP PEAK  6(8P11.21) WILD-TYPE     25     27     36     49     43     17
D6V6, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           34                             25
  CLUS_2                           21                             27
  CLUS_3                           20                             36
  CLUS_4                           19                             49
  CLUS_5                           25                             43
  CLUS_6                            9                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8P11.21) MUTATED       12     55     34     31     46
  AMP PEAK  6(8P11.21) WILD-TYPE     21     58     37     59     70
D6V7, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           12                             21
  CLUS_2                           55                             58
  CLUS_3                           34                             37
  CLUS_4                           31                             59
  CLUS_5                           46                             70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8P11.21) MUTATED       40     47     30     53      8
  AMP PEAK  6(8P11.21) WILD-TYPE     35     49     58     75     28
D6V8, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           40                             35
  CLUS_2                           47                             49
  CLUS_3                           30                             58
  CLUS_4                           53                             75
  CLUS_5                            8                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.21) MUTATED       71     27     69
  AMP PEAK  6(8P11.21) WILD-TYPE     89     38    103
D6V9, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           71                             89
  CLUS_2                           27                             38
  CLUS_3                           69                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.21) MUTATED       58     26     33     50
  AMP PEAK  6(8P11.21) WILD-TYPE     77     24     44     85
D6V10, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           58                             77
  CLUS_2                           26                             24
  CLUS_3                           33                             44
  CLUS_4                           50                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.21) MUTATED       38     29     31
  AMP PEAK  6(8P11.21) WILD-TYPE     41     49     32
D6V11, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           38                             41
  CLUS_2                           29                             49
  CLUS_3                           31                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.21) MUTATED       27     22     40      9
  AMP PEAK  6(8P11.21) WILD-TYPE     39     29     43     11
D6V12, multiclass
        clus
vv       AMP PEAK  6(8P11.21) MUTATED AMP PEAK  6(8P11.21) WILD-TYPE
  CLUS_1                           27                             39
  CLUS_2                           22                             29
  CLUS_3                           40                             43
  CLUS_4                            9                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q12.1) MUTATED       15     29     12     13
  AMP PEAK  7(8Q12.1) WILD-TYPE     20     32     17      8
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          15                            20
  CLUS_2                          29                            32
  CLUS_3                          12                            17
  CLUS_4                          13                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q12.1) MUTATED       13     34     22
  AMP PEAK  7(8Q12.1) WILD-TYPE     29     38     10
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                          34                            38
  CLUS_3                          22                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q12.1) MUTATED       29     88     59     52
  AMP PEAK  7(8Q12.1) WILD-TYPE      8     67    133      2
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          29                             8
  CLUS_2                          88                            67
  CLUS_3                          59                           133
  CLUS_4                          52                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q12.1) MUTATED       78     41     39
  AMP PEAK  7(8Q12.1) WILD-TYPE     40     51     32
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          78                            40
  CLUS_2                          41                            51
  CLUS_3                          39                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q12.1) MUTATED       52     58     13     41
  AMP PEAK  7(8Q12.1) WILD-TYPE     26     69     13     53
D7V5, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          52                            26
  CLUS_2                          58                            69
  CLUS_3                          13                            13
  CLUS_4                          41                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q12.1) MUTATED       42     27     29     28     29      9
  AMP PEAK  7(8Q12.1) WILD-TYPE     17     21     27     40     39     17
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          42                            17
  CLUS_2                          27                            21
  CLUS_3                          29                            27
  CLUS_4                          28                            40
  CLUS_5                          29                            39
  CLUS_6                           9                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8Q12.1) MUTATED       16     74     42     31     58
  AMP PEAK  7(8Q12.1) WILD-TYPE     17     39     29     59     58
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          16                            17
  CLUS_2                          74                            39
  CLUS_3                          42                            29
  CLUS_4                          31                            59
  CLUS_5                          58                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8Q12.1) MUTATED       50     58     34     70      9
  AMP PEAK  7(8Q12.1) WILD-TYPE     25     38     54     58     27
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          50                            25
  CLUS_2                          58                            38
  CLUS_3                          34                            54
  CLUS_4                          70                            58
  CLUS_5                           9                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q12.1) MUTATED       91     32     86
  AMP PEAK  7(8Q12.1) WILD-TYPE     69     33     86
D7V9, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          91                            69
  CLUS_2                          32                            33
  CLUS_3                          86                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q12.1) MUTATED       66     30     50     63
  AMP PEAK  7(8Q12.1) WILD-TYPE     69     20     27     72
D7V10, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          66                            69
  CLUS_2                          30                            20
  CLUS_3                          50                            27
  CLUS_4                          63                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q12.1) MUTATED       53     29     40
  AMP PEAK  7(8Q12.1) WILD-TYPE     26     49     23
D7V11, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          53                            26
  CLUS_2                          29                            49
  CLUS_3                          40                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8Q12.1) MUTATED       35     23     48     16
  AMP PEAK  7(8Q12.1) WILD-TYPE     31     28     35      4
D7V12, multiclass
        clus
vv       AMP PEAK  7(8Q12.1) MUTATED AMP PEAK  7(8Q12.1) WILD-TYPE
  CLUS_1                          35                            31
  CLUS_2                          23                            28
  CLUS_3                          48                            35
  CLUS_4                          16                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       17     33     14     14
  AMP PEAK  8(8Q24.21) WILD-TYPE     18     28     15      7
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           17                             18
  CLUS_2                           33                             28
  CLUS_3                           14                             15
  CLUS_4                           14                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       17     38     23
  AMP PEAK  8(8Q24.21) WILD-TYPE     25     34      9
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                           38                             34
  CLUS_3                           23                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       29    101     68     53
  AMP PEAK  8(8Q24.21) WILD-TYPE      8     54    124      1
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           29                              8
  CLUS_2                          101                             54
  CLUS_3                           68                            124
  CLUS_4                           53                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       86     43     42
  AMP PEAK  8(8Q24.21) WILD-TYPE     32     49     29
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           86                             32
  CLUS_2                           43                             49
  CLUS_3                           42                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       54     66     15     46
  AMP PEAK  8(8Q24.21) WILD-TYPE     24     61     11     48
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           54                             24
  CLUS_2                           66                             61
  CLUS_3                           15                             11
  CLUS_4                           46                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q24.21) MUTATED       43     31     31     31     34     11
  AMP PEAK  8(8Q24.21) WILD-TYPE     16     17     25     37     34     15
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           43                             16
  CLUS_2                           31                             17
  CLUS_3                           31                             25
  CLUS_4                           31                             37
  CLUS_5                           34                             34
  CLUS_6                           11                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q24.21) MUTATED       19     80     43     37     66
  AMP PEAK  8(8Q24.21) WILD-TYPE     14     33     28     53     50
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           19                             14
  CLUS_2                           80                             33
  CLUS_3                           43                             28
  CLUS_4                           37                             53
  CLUS_5                           66                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q24.21) MUTATED       54     62     40     79     10
  AMP PEAK  8(8Q24.21) WILD-TYPE     21     34     48     49     26
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           54                             21
  CLUS_2                           62                             34
  CLUS_3                           40                             48
  CLUS_4                           79                             49
  CLUS_5                           10                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       97     36     98
  AMP PEAK  8(8Q24.21) WILD-TYPE     63     29     74
D8V9, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           97                             63
  CLUS_2                           36                             29
  CLUS_3                           98                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       73     33     54     71
  AMP PEAK  8(8Q24.21) WILD-TYPE     62     17     23     64
D8V10, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           73                             62
  CLUS_2                           33                             17
  CLUS_3                           54                             23
  CLUS_4                           71                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       57     34     42
  AMP PEAK  8(8Q24.21) WILD-TYPE     22     44     21
D8V11, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           57                             22
  CLUS_2                           34                             44
  CLUS_3                           42                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q24.21) MUTATED       37     26     53     17
  AMP PEAK  8(8Q24.21) WILD-TYPE     29     25     30      3
D8V12, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           37                             29
  CLUS_2                           26                             25
  CLUS_3                           53                             30
  CLUS_4                           17                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11P15.5) MUTATED        2     18      3     12
  AMP PEAK  9(11P15.5) WILD-TYPE     33     43     26      9
D9V1, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                           18                             43
  CLUS_3                            3                             26
  CLUS_4                           12                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11P15.5) MUTATED        3     21     11
  AMP PEAK  9(11P15.5) WILD-TYPE     39     51     21
D9V2, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           21                             51
  CLUS_3                           11                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11P15.5) MUTATED       15     46     19     11
  AMP PEAK  9(11P15.5) WILD-TYPE     22    109    173     43
D9V3, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                           15                             22
  CLUS_2                           46                            109
  CLUS_3                           19                            173
  CLUS_4                           11                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11P15.5) MUTATED       36      6     11
  AMP PEAK  9(11P15.5) WILD-TYPE     82     86     60
D9V4, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                           36                             82
  CLUS_2                            6                             86
  CLUS_3                           11                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11P15.5) MUTATED       20     31      8      7
  AMP PEAK  9(11P15.5) WILD-TYPE     58     96     18     87
D9V5, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                           20                             58
  CLUS_2                           31                             96
  CLUS_3                            8                             18
  CLUS_4                            7                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(11P15.5) MUTATED       16     13     13     13      5      6
  AMP PEAK  9(11P15.5) WILD-TYPE     43     35     43     55     63     20
D9V6, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                           16                             43
  CLUS_2                           13                             35
  CLUS_3                           13                             43
  CLUS_4                           13                             55
  CLUS_5                            5                             63
  CLUS_6                            6                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11P15.5) MUTATED        6     33     15      3     31
  AMP PEAK  9(11P15.5) WILD-TYPE     27     80     56     87     85
D9V7, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                           33                             80
  CLUS_3                           15                             56
  CLUS_4                            3                             87
  CLUS_5                           31                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11P15.5) MUTATED       22     20      4     42      0
  AMP PEAK  9(11P15.5) WILD-TYPE     53     76     84     86     36
D9V8, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                           22                             53
  CLUS_2                           20                             76
  CLUS_3                            4                             84
  CLUS_4                           42                             86
  CLUS_5                            0                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11P15.5) MUTATED       28     11     45
  AMP PEAK  9(11P15.5) WILD-TYPE    132     54    127
D9V9, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                           28                            132
  CLUS_2                           11                             54
  CLUS_3                           45                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11P15.5) MUTATED        8     12     46     18
  AMP PEAK  9(11P15.5) WILD-TYPE    127     38     31    117
D9V10, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            8                            127
  CLUS_2                           12                             38
  CLUS_3                           46                             31
  CLUS_4                           18                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11P15.5) MUTATED       17      5     17
  AMP PEAK  9(11P15.5) WILD-TYPE     62     73     46
D9V11, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                           17                             62
  CLUS_2                            5                             73
  CLUS_3                           17                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11P15.5) MUTATED        8      3     16     12
  AMP PEAK  9(11P15.5) WILD-TYPE     58     48     67      8
D9V12, multiclass
        clus
vv       AMP PEAK  9(11P15.5) MUTATED AMP PEAK  9(11P15.5) WILD-TYPE
  CLUS_1                            8                             58
  CLUS_2                            3                             48
  CLUS_3                           16                             67
  CLUS_4                           12                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.33) MUTATED        9     12      9      5
  AMP PEAK 10(12P13.33) WILD-TYPE     26     49     20     16
D10V1, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             9                              26
  CLUS_2                            12                              49
  CLUS_3                             9                              20
  CLUS_4                             5                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED        9     17      9
  AMP PEAK 10(12P13.33) WILD-TYPE     33     55     23
D10V2, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             9                              33
  CLUS_2                            17                              55
  CLUS_3                             9                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.33) MUTATED       11     28     50     19
  AMP PEAK 10(12P13.33) WILD-TYPE     26    127    142     35
D10V3, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            11                              26
  CLUS_2                            28                             127
  CLUS_3                            50                             142
  CLUS_4                            19                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED       20     28     20
  AMP PEAK 10(12P13.33) WILD-TYPE     98     64     51
D10V4, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            20                              98
  CLUS_2                            28                              64
  CLUS_3                            20                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.33) MUTATED       16     28      9     25
  AMP PEAK 10(12P13.33) WILD-TYPE     62     99     17     69
D10V5, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            16                              62
  CLUS_2                            28                              99
  CLUS_3                             9                              17
  CLUS_4                            25                              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P13.33) MUTATED       14     11     10     18     18      7
  AMP PEAK 10(12P13.33) WILD-TYPE     45     37     46     50     50     19
D10V6, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            14                              45
  CLUS_2                            11                              37
  CLUS_3                            10                              46
  CLUS_4                            18                              50
  CLUS_5                            18                              50
  CLUS_6                             7                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED        8     26     19     21     31
  AMP PEAK 10(12P13.33) WILD-TYPE     25     87     52     69     85
D10V7, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                             8                              25
  CLUS_2                            26                              87
  CLUS_3                            19                              52
  CLUS_4                            21                              69
  CLUS_5                            31                              85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.33) MUTATED       14     29     22     31      9
  AMP PEAK 10(12P13.33) WILD-TYPE     61     67     66     97     27
D10V8, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            14                              61
  CLUS_2                            29                              67
  CLUS_3                            22                              66
  CLUS_4                            31                              97
  CLUS_5                             9                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED       44     13     44
  AMP PEAK 10(12P13.33) WILD-TYPE    116     52    128
D10V9, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            44                             116
  CLUS_2                            13                              52
  CLUS_3                            44                             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.33) MUTATED       34     10     20     37
  AMP PEAK 10(12P13.33) WILD-TYPE    101     40     57     98
D10V10, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            34                             101
  CLUS_2                            10                              40
  CLUS_3                            20                              57
  CLUS_4                            37                              98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.33) MUTATED       19     23     15
  AMP PEAK 10(12P13.33) WILD-TYPE     60     55     48
D10V11, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            19                              60
  CLUS_2                            23                              55
  CLUS_3                            15                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.33) MUTATED       19     15     18      5
  AMP PEAK 10(12P13.33) WILD-TYPE     47     36     65     15
D10V12, multiclass
        clus
vv       AMP PEAK 10(12P13.33) MUTATED AMP PEAK 10(12P13.33) WILD-TYPE
  CLUS_1                            19                              47
  CLUS_2                            15                              36
  CLUS_3                            18                              65
  CLUS_4                             5                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(13Q12.13) MUTATED       15     51     10     16
  AMP PEAK 11(13Q12.13) WILD-TYPE     20     10     19      5
D11V1, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            15                              20
  CLUS_2                            51                              10
  CLUS_3                            10                              19
  CLUS_4                            16                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(13Q12.13) MUTATED       13     49     30
  AMP PEAK 11(13Q12.13) WILD-TYPE     29     23      2
D11V2, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            13                              29
  CLUS_2                            49                              23
  CLUS_3                            30                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(13Q12.13) MUTATED       25    150     58     34
  AMP PEAK 11(13Q12.13) WILD-TYPE     12      5    134     20
D11V3, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            25                              12
  CLUS_2                           150                               5
  CLUS_3                            58                             134
  CLUS_4                            34                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(13Q12.13) MUTATED       93     42     37
  AMP PEAK 11(13Q12.13) WILD-TYPE     25     50     34
D11V4, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            93                              25
  CLUS_2                            42                              50
  CLUS_3                            37                              34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(13Q12.13) MUTATED       53     83     17     42
  AMP PEAK 11(13Q12.13) WILD-TYPE     25     44      9     52
D11V5, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            53                              25
  CLUS_2                            83                              44
  CLUS_3                            17                               9
  CLUS_4                            42                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(13Q12.13) MUTATED       41     34     36     40     29     15
  AMP PEAK 11(13Q12.13) WILD-TYPE     18     14     20     28     39     11
D11V6, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            41                              18
  CLUS_2                            34                              14
  CLUS_3                            36                              20
  CLUS_4                            40                              28
  CLUS_5                            29                              39
  CLUS_6                            15                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(13Q12.13) MUTATED       24     88     41     24     82
  AMP PEAK 11(13Q12.13) WILD-TYPE      9     25     30     66     34
D11V7, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            24                               9
  CLUS_2                            88                              25
  CLUS_3                            41                              30
  CLUS_4                            24                              66
  CLUS_5                            82                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(13Q12.13) MUTATED       65     66     25     94      9
  AMP PEAK 11(13Q12.13) WILD-TYPE     10     30     63     34     27
D11V8, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            65                              10
  CLUS_2                            66                              30
  CLUS_3                            25                              63
  CLUS_4                            94                              34
  CLUS_5                             9                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(13Q12.13) MUTATED       99     36    108
  AMP PEAK 11(13Q12.13) WILD-TYPE     61     29     64
D11V9, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            99                              61
  CLUS_2                            36                              29
  CLUS_3                           108                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(13Q12.13) MUTATED       81     30     45     87
  AMP PEAK 11(13Q12.13) WILD-TYPE     54     20     32     48
D11V10, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            81                              54
  CLUS_2                            30                              20
  CLUS_3                            45                              32
  CLUS_4                            87                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(13Q12.13) MUTATED       63     29     43
  AMP PEAK 11(13Q12.13) WILD-TYPE     16     49     20
D11V11, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            63                              16
  CLUS_2                            29                              49
  CLUS_3                            43                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(13Q12.13) MUTATED       51     21     50     13
  AMP PEAK 11(13Q12.13) WILD-TYPE     15     30     33      7
D11V12, multiclass
        clus
vv       AMP PEAK 11(13Q12.13) MUTATED AMP PEAK 11(13Q12.13) WILD-TYPE
  CLUS_1                            51                              15
  CLUS_2                            21                              30
  CLUS_3                            50                              33
  CLUS_4                            13                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q22.1) MUTATED       15     49     12     15
  AMP PEAK 12(13Q22.1) WILD-TYPE     20     12     17      6
D12V1, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           15                             20
  CLUS_2                           49                             12
  CLUS_3                           12                             17
  CLUS_4                           15                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q22.1) MUTATED       13     48     30
  AMP PEAK 12(13Q22.1) WILD-TYPE     29     24      2
D12V2, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                           48                             24
  CLUS_3                           30                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q22.1) MUTATED       24    148     63     35
  AMP PEAK 12(13Q22.1) WILD-TYPE     13      7    129     19
D12V3, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           24                             13
  CLUS_2                          148                              7
  CLUS_3                           63                            129
  CLUS_4                           35                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q22.1) MUTATED       93     45     37
  AMP PEAK 12(13Q22.1) WILD-TYPE     25     47     34
D12V4, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           93                             25
  CLUS_2                           45                             47
  CLUS_3                           37                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q22.1) MUTATED       53     83     17     43
  AMP PEAK 12(13Q22.1) WILD-TYPE     25     44      9     51
D12V5, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           53                             25
  CLUS_2                           83                             44
  CLUS_3                           17                              9
  CLUS_4                           43                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(13Q22.1) MUTATED       41     33     36     41     30     15
  AMP PEAK 12(13Q22.1) WILD-TYPE     18     15     20     27     38     11
D12V6, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           41                             18
  CLUS_2                           33                             15
  CLUS_3                           36                             20
  CLUS_4                           41                             27
  CLUS_5                           30                             38
  CLUS_6                           15                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q22.1) MUTATED       23     89     42     27     81
  AMP PEAK 12(13Q22.1) WILD-TYPE     10     24     29     63     35
D12V7, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           23                             10
  CLUS_2                           89                             24
  CLUS_3                           42                             29
  CLUS_4                           27                             63
  CLUS_5                           81                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q22.1) MUTATED       64     68     28     92     10
  AMP PEAK 12(13Q22.1) WILD-TYPE     11     28     60     36     26
D12V8, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           64                             11
  CLUS_2                           68                             28
  CLUS_3                           28                             60
  CLUS_4                           92                             36
  CLUS_5                           10                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q22.1) MUTATED      103     36    107
  AMP PEAK 12(13Q22.1) WILD-TYPE     57     29     65
D12V9, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                          103                             57
  CLUS_2                           36                             29
  CLUS_3                          107                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q22.1) MUTATED       83     31     47     85
  AMP PEAK 12(13Q22.1) WILD-TYPE     52     19     30     50
D12V10, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           83                             52
  CLUS_2                           31                             19
  CLUS_3                           47                             30
  CLUS_4                           85                             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q22.1) MUTATED       63     33     43
  AMP PEAK 12(13Q22.1) WILD-TYPE     16     45     20
D12V11, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           63                             16
  CLUS_2                           33                             45
  CLUS_3                           43                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(13Q22.1) MUTATED       51     23     51     14
  AMP PEAK 12(13Q22.1) WILD-TYPE     15     28     32      6
D12V12, multiclass
        clus
vv       AMP PEAK 12(13Q22.1) MUTATED AMP PEAK 12(13Q22.1) WILD-TYPE
  CLUS_1                           51                             15
  CLUS_2                           23                             28
  CLUS_3                           51                             32
  CLUS_4                           14                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16P11.2) MUTATED        6     24      3     12
  AMP PEAK 13(16P11.2) WILD-TYPE     29     37     26      9
D13V1, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                           24                             37
  CLUS_3                            3                             26
  CLUS_4                           12                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16P11.2) MUTATED        6     16     23
  AMP PEAK 13(16P11.2) WILD-TYPE     36     56      9
D13V2, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                           16                             56
  CLUS_3                           23                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16P11.2) MUTATED       12     84     16      9
  AMP PEAK 13(16P11.2) WILD-TYPE     25     71    176     45
D13V3, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           84                             71
  CLUS_3                           16                            176
  CLUS_4                            9                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16P11.2) MUTATED       40     16     19
  AMP PEAK 13(16P11.2) WILD-TYPE     78     76     52
D13V4, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           40                             78
  CLUS_2                           16                             76
  CLUS_3                           19                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16P11.2) MUTATED       30     30     10     20
  AMP PEAK 13(16P11.2) WILD-TYPE     48     97     16     74
D13V5, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           30                             48
  CLUS_2                           30                             97
  CLUS_3                           10                             16
  CLUS_4                           20                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(16P11.2) MUTATED       21     13     15     22     17      2
  AMP PEAK 13(16P11.2) WILD-TYPE     38     35     41     46     51     24
D13V6, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           21                             38
  CLUS_2                           13                             35
  CLUS_3                           15                             41
  CLUS_4                           22                             46
  CLUS_5                           17                             51
  CLUS_6                            2                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(16P11.2) MUTATED        8     42     19      7     43
  AMP PEAK 13(16P11.2) WILD-TYPE     25     71     52     83     73
D13V7, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           42                             71
  CLUS_3                           19                             52
  CLUS_4                            7                             83
  CLUS_5                           43                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(16P11.2) MUTATED       30     25     10     52      2
  AMP PEAK 13(16P11.2) WILD-TYPE     45     71     78     76     34
D13V8, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           30                             45
  CLUS_2                           25                             71
  CLUS_3                           10                             78
  CLUS_4                           52                             76
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16P11.2) MUTATED       47     17     50
  AMP PEAK 13(16P11.2) WILD-TYPE    113     48    122
D13V9, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           47                            113
  CLUS_2                           17                             48
  CLUS_3                           50                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16P11.2) MUTATED       29     16     25     44
  AMP PEAK 13(16P11.2) WILD-TYPE    106     34     52     91
D13V10, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           29                            106
  CLUS_2                           16                             34
  CLUS_3                           25                             52
  CLUS_4                           44                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(16P11.2) MUTATED       31     10     21
  AMP PEAK 13(16P11.2) WILD-TYPE     48     68     42
D13V11, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           31                             48
  CLUS_2                           10                             68
  CLUS_3                           21                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(16P11.2) MUTATED       25      5     23      9
  AMP PEAK 13(16P11.2) WILD-TYPE     41     46     60     11
D13V12, multiclass
        clus
vv       AMP PEAK 13(16P11.2) MUTATED AMP PEAK 13(16P11.2) WILD-TYPE
  CLUS_1                           25                             41
  CLUS_2                            5                             46
  CLUS_3                           23                             60
  CLUS_4                            9                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q12.1) MUTATED        4     22      2     12
  AMP PEAK 14(16Q12.1) WILD-TYPE     31     39     27      9
D14V1, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           22                             39
  CLUS_3                            2                             27
  CLUS_4                           12                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q12.1) MUTATED        3     17     20
  AMP PEAK 14(16Q12.1) WILD-TYPE     39     55     12
D14V2, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           17                             55
  CLUS_3                           20                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q12.1) MUTATED       11     75     12      9
  AMP PEAK 14(16Q12.1) WILD-TYPE     26     80    180     45
D14V3, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           11                             26
  CLUS_2                           75                             80
  CLUS_3                           12                            180
  CLUS_4                            9                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q12.1) MUTATED       34     14     18
  AMP PEAK 14(16Q12.1) WILD-TYPE     84     78     53
D14V4, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           34                             84
  CLUS_2                           14                             78
  CLUS_3                           18                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q12.1) MUTATED       26     27      8     18
  AMP PEAK 14(16Q12.1) WILD-TYPE     52    100     18     76
D14V5, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           26                             52
  CLUS_2                           27                            100
  CLUS_3                            8                             18
  CLUS_4                           18                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(16Q12.1) MUTATED       18     13     11     20     15      2
  AMP PEAK 14(16Q12.1) WILD-TYPE     41     35     45     48     53     24
D14V6, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           18                             41
  CLUS_2                           13                             35
  CLUS_3                           11                             45
  CLUS_4                           20                             48
  CLUS_5                           15                             53
  CLUS_6                            2                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(16Q12.1) MUTATED        8     37     17      5     38
  AMP PEAK 14(16Q12.1) WILD-TYPE     25     76     54     85     78
D14V7, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           37                             76
  CLUS_3                           17                             54
  CLUS_4                            5                             85
  CLUS_5                           38                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(16Q12.1) MUTATED       29     21      8     47      0
  AMP PEAK 14(16Q12.1) WILD-TYPE     46     75     80     81     36
D14V8, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           29                             46
  CLUS_2                           21                             75
  CLUS_3                            8                             80
  CLUS_4                           47                             81
  CLUS_5                            0                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q12.1) MUTATED       40     17     43
  AMP PEAK 14(16Q12.1) WILD-TYPE    120     48    129
D14V9, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           40                            120
  CLUS_2                           17                             48
  CLUS_3                           43                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q12.1) MUTATED       24     15     24     37
  AMP PEAK 14(16Q12.1) WILD-TYPE    111     35     53     98
D14V10, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           24                            111
  CLUS_2                           15                             35
  CLUS_3                           24                             53
  CLUS_4                           37                             98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(16Q12.1) MUTATED       27      7     21
  AMP PEAK 14(16Q12.1) WILD-TYPE     52     71     42
D14V11, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           27                             52
  CLUS_2                            7                             71
  CLUS_3                           21                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(16Q12.1) MUTATED       23      3     20      9
  AMP PEAK 14(16Q12.1) WILD-TYPE     43     48     63     11
D14V12, multiclass
        clus
vv       AMP PEAK 14(16Q12.1) MUTATED AMP PEAK 14(16Q12.1) WILD-TYPE
  CLUS_1                           23                             43
  CLUS_2                            3                             48
  CLUS_3                           20                             63
  CLUS_4                            9                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17P11.2) MUTATED        2      6      1      4
  AMP PEAK 15(17P11.2) WILD-TYPE     33     55     28     17
D15V1, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                            6                             55
  CLUS_3                            1                             28
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17P11.2) MUTATED        2      3      8
  AMP PEAK 15(17P11.2) WILD-TYPE     40     69     24
D15V2, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                            3                             69
  CLUS_3                            8                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17P11.2) MUTATED        7     21     13      2
  AMP PEAK 15(17P11.2) WILD-TYPE     30    134    179     52
D15V3, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                            7                             30
  CLUS_2                           21                            134
  CLUS_3                           13                            179
  CLUS_4                            2                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17P11.2) MUTATED       19      7      5
  AMP PEAK 15(17P11.2) WILD-TYPE     99     85     66
D15V4, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                           19                             99
  CLUS_2                            7                             85
  CLUS_3                            5                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17P11.2) MUTATED       16      9      0      7
  AMP PEAK 15(17P11.2) WILD-TYPE     62    118     26     87
D15V5, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                           16                             62
  CLUS_2                            9                            118
  CLUS_3                            0                             26
  CLUS_4                            7                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(17P11.2) MUTATED        9      9      5      4      5      0
  AMP PEAK 15(17P11.2) WILD-TYPE     50     39     51     64     63     26
D15V6, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                            9                             39
  CLUS_3                            5                             51
  CLUS_4                            4                             64
  CLUS_5                            5                             63
  CLUS_6                            0                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17P11.2) MUTATED        2     15      8      4     12
  AMP PEAK 15(17P11.2) WILD-TYPE     31     98     63     86    104
D15V7, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                           15                             98
  CLUS_3                            8                             63
  CLUS_4                            4                             86
  CLUS_5                           12                            104
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17P11.2) MUTATED       10     10      6     13      2
  AMP PEAK 15(17P11.2) WILD-TYPE     65     86     82    115     34
D15V8, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                           10                             65
  CLUS_2                           10                             86
  CLUS_3                            6                             82
  CLUS_4                           13                            115
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17P11.2) MUTATED       19      5     15
  AMP PEAK 15(17P11.2) WILD-TYPE    141     60    157
D15V9, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                           19                            141
  CLUS_2                            5                             60
  CLUS_3                           15                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17P11.2) MUTATED       12      5      6     16
  AMP PEAK 15(17P11.2) WILD-TYPE    123     45     71    119
D15V10, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                           12                            123
  CLUS_2                            5                             45
  CLUS_3                            6                             71
  CLUS_4                           16                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17P11.2) MUTATED       10      5      9
  AMP PEAK 15(17P11.2) WILD-TYPE     69     73     54
D15V11, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                            5                             73
  CLUS_3                            9                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17P11.2) MUTATED       11      3      7      3
  AMP PEAK 15(17P11.2) WILD-TYPE     55     48     76     17
D15V12, multiclass
        clus
vv       AMP PEAK 15(17P11.2) MUTATED AMP PEAK 15(17P11.2) WILD-TYPE
  CLUS_1                           11                             55
  CLUS_2                            3                             48
  CLUS_3                            7                             76
  CLUS_4                            3                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q12) MUTATED        4     21      4      7
  AMP PEAK 16(17Q12) WILD-TYPE     31     40     25     14
D16V1, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          4                           31
  CLUS_2                         21                           40
  CLUS_3                          4                           25
  CLUS_4                          7                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q12) MUTATED        6     16     14
  AMP PEAK 16(17Q12) WILD-TYPE     36     56     18
D16V2, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          6                           36
  CLUS_2                         16                           56
  CLUS_3                         14                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q12) MUTATED       11     57     22     19
  AMP PEAK 16(17Q12) WILD-TYPE     26     98    170     35
D16V3, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         11                           26
  CLUS_2                         57                           98
  CLUS_3                         22                          170
  CLUS_4                         19                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q12) MUTATED       44     18     10
  AMP PEAK 16(17Q12) WILD-TYPE     74     74     61
D16V4, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         44                           74
  CLUS_2                         18                           74
  CLUS_3                         10                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q12) MUTATED       25     28      6     16
  AMP PEAK 16(17Q12) WILD-TYPE     53     99     20     78
D16V5, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         25                           53
  CLUS_2                         28                           99
  CLUS_3                          6                           20
  CLUS_4                         16                           78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(17Q12) MUTATED       17     18     14     13     13      0
  AMP PEAK 16(17Q12) WILD-TYPE     42     30     42     55     55     26
D16V6, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         17                           42
  CLUS_2                         18                           30
  CLUS_3                         14                           42
  CLUS_4                         13                           55
  CLUS_5                         13                           55
  CLUS_6                          0                           26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q12) MUTATED        9     44     12     11     29
  AMP PEAK 16(17Q12) WILD-TYPE     24     69     59     79     87
D16V7, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                          9                           24
  CLUS_2                         44                           69
  CLUS_3                         12                           59
  CLUS_4                         11                           79
  CLUS_5                         29                           87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q12) MUTATED       19     33     11     38      4
  AMP PEAK 16(17Q12) WILD-TYPE     56     63     77     90     32
D16V8, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         19                           56
  CLUS_2                         33                           63
  CLUS_3                         11                           77
  CLUS_4                         38                           90
  CLUS_5                          4                           32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q12) MUTATED       48      9     44
  AMP PEAK 16(17Q12) WILD-TYPE    112     56    128
D16V9, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         48                          112
  CLUS_2                          9                           56
  CLUS_3                         44                          128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q12) MUTATED       30     12     31     28
  AMP PEAK 16(17Q12) WILD-TYPE    105     38     46    107
D16V10, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         30                          105
  CLUS_2                         12                           38
  CLUS_3                         31                           46
  CLUS_4                         28                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q12) MUTATED       27     13     17
  AMP PEAK 16(17Q12) WILD-TYPE     52     65     46
D16V11, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         27                           52
  CLUS_2                         13                           65
  CLUS_3                         17                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(17Q12) MUTATED       22      9     17      9
  AMP PEAK 16(17Q12) WILD-TYPE     44     42     66     11
D16V12, multiclass
        clus
vv       AMP PEAK 16(17Q12) MUTATED AMP PEAK 16(17Q12) WILD-TYPE
  CLUS_1                         22                           44
  CLUS_2                          9                           42
  CLUS_3                         17                           66
  CLUS_4                          9                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q24.1) MUTATED        2     19      5      6
  AMP PEAK 17(17Q24.1) WILD-TYPE     33     42     24     15
D17V1, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                           19                             42
  CLUS_3                            5                             24
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q24.1) MUTATED        4     15     13
  AMP PEAK 17(17Q24.1) WILD-TYPE     38     57     19
D17V2, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           15                             57
  CLUS_3                           13                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q24.1) MUTATED       10     57     17     18
  AMP PEAK 17(17Q24.1) WILD-TYPE     27     98    175     36
D17V3, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                           57                             98
  CLUS_3                           17                            175
  CLUS_4                           18                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q24.1) MUTATED       43     18      8
  AMP PEAK 17(17Q24.1) WILD-TYPE     75     74     63
D17V4, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           43                             75
  CLUS_2                           18                             74
  CLUS_3                            8                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q24.1) MUTATED       24     28      6     13
  AMP PEAK 17(17Q24.1) WILD-TYPE     54     99     20     81
D17V5, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           24                             54
  CLUS_2                           28                             99
  CLUS_3                            6                             20
  CLUS_4                           13                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17Q24.1) MUTATED       16     18     11     15     11      0
  AMP PEAK 17(17Q24.1) WILD-TYPE     43     30     45     53     57     26
D17V6, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           16                             43
  CLUS_2                           18                             30
  CLUS_3                           11                             45
  CLUS_4                           15                             53
  CLUS_5                           11                             57
  CLUS_6                            0                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q24.1) MUTATED       10     43      8     11     26
  AMP PEAK 17(17Q24.1) WILD-TYPE     23     70     63     79     90
D17V7, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           43                             70
  CLUS_3                            8                             63
  CLUS_4                           11                             79
  CLUS_5                           26                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q24.1) MUTATED       20     33      7     36      2
  AMP PEAK 17(17Q24.1) WILD-TYPE     55     63     81     92     34
D17V8, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           20                             55
  CLUS_2                           33                             63
  CLUS_3                            7                             81
  CLUS_4                           36                             92
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q24.1) MUTATED       46      7     39
  AMP PEAK 17(17Q24.1) WILD-TYPE    114     58    133
D17V9, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           46                            114
  CLUS_2                            7                             58
  CLUS_3                           39                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q24.1) MUTATED       30      9     27     26
  AMP PEAK 17(17Q24.1) WILD-TYPE    105     41     50    109
D17V10, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           30                            105
  CLUS_2                            9                             41
  CLUS_3                           27                             50
  CLUS_4                           26                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q24.1) MUTATED       26     13     14
  AMP PEAK 17(17Q24.1) WILD-TYPE     53     65     49
D17V11, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           26                             53
  CLUS_2                           13                             65
  CLUS_3                           14                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q24.1) MUTATED       24      8     13      8
  AMP PEAK 17(17Q24.1) WILD-TYPE     42     43     70     12
D17V12, multiclass
        clus
vv       AMP PEAK 17(17Q24.1) MUTATED AMP PEAK 17(17Q24.1) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                            8                             43
  CLUS_3                           13                             70
  CLUS_4                            8                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.2) MUTATED        1     12      4      1
  AMP PEAK 18(19P13.2) WILD-TYPE     34     49     25     20
D18V1, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            1                             34
  CLUS_2                           12                             49
  CLUS_3                            4                             25
  CLUS_4                            1                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED        1     12      5
  AMP PEAK 18(19P13.2) WILD-TYPE     41     60     27
D18V2, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            1                             41
  CLUS_2                           12                             60
  CLUS_3                            5                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.2) MUTATED       11     37     14      9
  AMP PEAK 18(19P13.2) WILD-TYPE     26    118    178     45
D18V3, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           11                             26
  CLUS_2                           37                            118
  CLUS_3                           14                            178
  CLUS_4                            9                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED       32     12      9
  AMP PEAK 18(19P13.2) WILD-TYPE     86     80     62
D18V4, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           32                             86
  CLUS_2                           12                             80
  CLUS_3                            9                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.2) MUTATED       14     22      6     13
  AMP PEAK 18(19P13.2) WILD-TYPE     64    105     20     81
D18V5, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           14                             64
  CLUS_2                           22                            105
  CLUS_3                            6                             20
  CLUS_4                           13                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(19P13.2) MUTATED       11     11      9     13     10      1
  AMP PEAK 18(19P13.2) WILD-TYPE     48     37     47     55     58     25
D18V6, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           11                             48
  CLUS_2                           11                             37
  CLUS_3                            9                             47
  CLUS_4                           13                             55
  CLUS_5                           10                             58
  CLUS_6                            1                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(19P13.2) MUTATED        7     21     12     11     19
  AMP PEAK 18(19P13.2) WILD-TYPE     26     92     59     79     97
D18V7, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                            7                             26
  CLUS_2                           21                             92
  CLUS_3                           12                             59
  CLUS_4                           11                             79
  CLUS_5                           19                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(19P13.2) MUTATED       22     16      9     22      1
  AMP PEAK 18(19P13.2) WILD-TYPE     53     80     79    106     35
D18V8, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           22                             53
  CLUS_2                           16                             80
  CLUS_3                            9                             79
  CLUS_4                           22                            106
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED       28     14     24
  AMP PEAK 18(19P13.2) WILD-TYPE    132     51    148
D18V9, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           28                            132
  CLUS_2                           14                             51
  CLUS_3                           24                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.2) MUTATED       22     12     10     22
  AMP PEAK 18(19P13.2) WILD-TYPE    113     38     67    113
D18V10, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           22                            113
  CLUS_2                           12                             38
  CLUS_3                           10                             67
  CLUS_4                           22                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.2) MUTATED       18      7     17
  AMP PEAK 18(19P13.2) WILD-TYPE     61     71     46
D18V11, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           18                             61
  CLUS_2                            7                             71
  CLUS_3                           17                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.2) MUTATED       15      3     19      5
  AMP PEAK 18(19P13.2) WILD-TYPE     51     48     64     15
D18V12, multiclass
        clus
vv       AMP PEAK 18(19P13.2) MUTATED AMP PEAK 18(19P13.2) WILD-TYPE
  CLUS_1                           15                             51
  CLUS_2                            3                             48
  CLUS_3                           19                             64
  CLUS_4                            5                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(19Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q13.11) MUTATED        2     13      6      4
  AMP PEAK 19(19Q13.11) WILD-TYPE     33     48     23     17
D19V1, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                             2                              33
  CLUS_2                            13                              48
  CLUS_3                             6                              23
  CLUS_4                             4                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19Q13.11) MUTATED        2     16      7
  AMP PEAK 19(19Q13.11) WILD-TYPE     40     56     25
D19V2, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                             2                              40
  CLUS_2                            16                              56
  CLUS_3                             7                              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q13.11) MUTATED       16     42     22     10
  AMP PEAK 19(19Q13.11) WILD-TYPE     21    113    170     44
D19V3, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            16                              21
  CLUS_2                            42                             113
  CLUS_3                            22                             170
  CLUS_4                            10                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19Q13.11) MUTATED       35     17     13
  AMP PEAK 19(19Q13.11) WILD-TYPE     83     75     58
D19V4, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            35                              83
  CLUS_2                            17                              75
  CLUS_3                            13                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q13.11) MUTATED       21     26      9     12
  AMP PEAK 19(19Q13.11) WILD-TYPE     57    101     17     82
D19V5, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            21                              57
  CLUS_2                            26                             101
  CLUS_3                             9                              17
  CLUS_4                            12                              82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(19Q13.11) MUTATED       16     13     10     16     10      3
  AMP PEAK 19(19Q13.11) WILD-TYPE     43     35     46     52     58     23
D19V6, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            16                              43
  CLUS_2                            13                              35
  CLUS_3                            10                              46
  CLUS_4                            16                              52
  CLUS_5                            10                              58
  CLUS_6                             3                              23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(19Q13.11) MUTATED       11     28     17     12     20
  AMP PEAK 19(19Q13.11) WILD-TYPE     22     85     54     78     96
D19V7, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            11                              22
  CLUS_2                            28                              85
  CLUS_3                            17                              54
  CLUS_4                            12                              78
  CLUS_5                            20                              96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(19Q13.11) MUTATED       25     20     13     30      0
  AMP PEAK 19(19Q13.11) WILD-TYPE     50     76     75     98     36
D19V8, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            25                              50
  CLUS_2                            20                              76
  CLUS_3                            13                              75
  CLUS_4                            30                              98
  CLUS_5                             0                              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19Q13.11) MUTATED       35     16     31
  AMP PEAK 19(19Q13.11) WILD-TYPE    125     49    141
D19V9, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            35                             125
  CLUS_2                            16                              49
  CLUS_3                            31                             141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q13.11) MUTATED       27     12     12     31
  AMP PEAK 19(19Q13.11) WILD-TYPE    108     38     65    104
D19V10, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            27                             108
  CLUS_2                            12                              38
  CLUS_3                            12                              65
  CLUS_4                            31                             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19Q13.11) MUTATED       20     10     19
  AMP PEAK 19(19Q13.11) WILD-TYPE     59     68     44
D19V11, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            20                              59
  CLUS_2                            10                              68
  CLUS_3                            19                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19Q13.11) MUTATED       16      5     23      5
  AMP PEAK 19(19Q13.11) WILD-TYPE     50     46     60     15
D19V12, multiclass
        clus
vv       AMP PEAK 19(19Q13.11) MUTATED AMP PEAK 19(19Q13.11) WILD-TYPE
  CLUS_1                            16                              50
  CLUS_2                             5                              46
  CLUS_3                            23                              60
  CLUS_4                             5                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(20P11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P11.23) MUTATED       12     34     13     14
  AMP PEAK 20(20P11.23) WILD-TYPE     23     27     16      7
D20V1, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            12                              23
  CLUS_2                            34                              27
  CLUS_3                            13                              16
  CLUS_4                            14                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20P11.23) MUTATED       11     46     16
  AMP PEAK 20(20P11.23) WILD-TYPE     31     26     16
D20V2, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            11                              31
  CLUS_2                            46                              26
  CLUS_3                            16                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P11.23) MUTATED       37     88     58     32
  AMP PEAK 20(20P11.23) WILD-TYPE      0     67    134     22
D20V3, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            37                               0
  CLUS_2                            88                              67
  CLUS_3                            58                             134
  CLUS_4                            32                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20P11.23) MUTATED       69     39     30
  AMP PEAK 20(20P11.23) WILD-TYPE     49     53     41
D20V4, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            69                              49
  CLUS_2                            39                              53
  CLUS_3                            30                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P11.23) MUTATED       45     57     16     32
  AMP PEAK 20(20P11.23) WILD-TYPE     33     70     10     62
D20V5, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            45                              33
  CLUS_2                            57                              70
  CLUS_3                            16                              10
  CLUS_4                            32                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(20P11.23) MUTATED       35     22     23     33     25     12
  AMP PEAK 20(20P11.23) WILD-TYPE     24     26     33     35     43     14
D20V6, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            35                              24
  CLUS_2                            22                              26
  CLUS_3                            23                              33
  CLUS_4                            33                              35
  CLUS_5                            25                              43
  CLUS_6                            12                              14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20P11.23) MUTATED       22     67     31     22     64
  AMP PEAK 20(20P11.23) WILD-TYPE     11     46     40     68     52
D20V7, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            22                              11
  CLUS_2                            67                              46
  CLUS_3                            31                              40
  CLUS_4                            22                              68
  CLUS_5                            64                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(20P11.23) MUTATED       39     54     29     79      5
  AMP PEAK 20(20P11.23) WILD-TYPE     36     42     59     49     31
D20V8, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            39                              36
  CLUS_2                            54                              42
  CLUS_3                            29                              59
  CLUS_4                            79                              49
  CLUS_5                             5                              31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20P11.23) MUTATED       79     27     88
  AMP PEAK 20(20P11.23) WILD-TYPE     81     38     84
D20V9, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            79                              81
  CLUS_2                            27                              38
  CLUS_3                            88                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P11.23) MUTATED       61     23     47     63
  AMP PEAK 20(20P11.23) WILD-TYPE     74     27     30     72
D20V10, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            61                              74
  CLUS_2                            23                              27
  CLUS_3                            47                              30
  CLUS_4                            63                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(20P11.23) MUTATED       47     25     32
  AMP PEAK 20(20P11.23) WILD-TYPE     32     53     31
D20V11, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            47                              32
  CLUS_2                            25                              53
  CLUS_3                            32                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(20P11.23) MUTATED       39     16     39     10
  AMP PEAK 20(20P11.23) WILD-TYPE     27     35     44     10
D20V12, multiclass
        clus
vv       AMP PEAK 20(20P11.23) MUTATED AMP PEAK 20(20P11.23) WILD-TYPE
  CLUS_1                            39                              27
  CLUS_2                            16                              35
  CLUS_3                            39                              44
  CLUS_4                            10                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q11.21) MUTATED       13     58     16     18
  AMP PEAK 21(20Q11.21) WILD-TYPE     22      3     13      3
D21V1, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            13                              22
  CLUS_2                            58                               3
  CLUS_3                            16                              13
  CLUS_4                            18                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q11.21) MUTATED       12     62     31
  AMP PEAK 21(20Q11.21) WILD-TYPE     30     10      1
D21V2, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            12                              30
  CLUS_2                            62                              10
  CLUS_3                            31                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q11.21) MUTATED       37    152     77     48
  AMP PEAK 21(20Q11.21) WILD-TYPE      0      3    115      6
D21V3, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            37                               0
  CLUS_2                           152                               3
  CLUS_3                            77                             115
  CLUS_4                            48                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q11.21) MUTATED      112     47     44
  AMP PEAK 21(20Q11.21) WILD-TYPE      6     45     27
D21V4, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                           112                               6
  CLUS_2                            47                              45
  CLUS_3                            44                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q11.21) MUTATED       63     93     21     51
  AMP PEAK 21(20Q11.21) WILD-TYPE     15     34      5     43
D21V5, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            63                              15
  CLUS_2                            93                              34
  CLUS_3                            21                               5
  CLUS_4                            51                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(20Q11.21) MUTATED       50     37     40     50     37     14
  AMP PEAK 21(20Q11.21) WILD-TYPE      9     11     16     18     31     12
D21V6, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            50                               9
  CLUS_2                            37                              11
  CLUS_3                            40                              16
  CLUS_4                            50                              18
  CLUS_5                            37                              31
  CLUS_6                            14                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q11.21) MUTATED       26    110     50     28     89
  AMP PEAK 21(20Q11.21) WILD-TYPE      7      3     21     62     27
D21V7, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            26                               7
  CLUS_2                           110                               3
  CLUS_3                            50                              21
  CLUS_4                            28                              62
  CLUS_5                            89                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(20Q11.21) MUTATED       69     83     33    112      6
  AMP PEAK 21(20Q11.21) WILD-TYPE      6     13     55     16     30
D21V8, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            69                               6
  CLUS_2                            83                              13
  CLUS_3                            33                              55
  CLUS_4                           112                              16
  CLUS_5                             6                              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q11.21) MUTATED      117     45    122
  AMP PEAK 21(20Q11.21) WILD-TYPE     43     20     50
D21V9, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                           117                              43
  CLUS_2                            45                              20
  CLUS_3                           122                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q11.21) MUTATED       92     36     68     88
  AMP PEAK 21(20Q11.21) WILD-TYPE     43     14      9     47
D21V10, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            92                              43
  CLUS_2                            36                              14
  CLUS_3                            68                               9
  CLUS_4                            88                              47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(20Q11.21) MUTATED       74     34     51
  AMP PEAK 21(20Q11.21) WILD-TYPE      5     44     12
D21V11, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            74                               5
  CLUS_2                            34                              44
  CLUS_3                            51                              12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(20Q11.21) MUTATED       58     24     58     19
  AMP PEAK 21(20Q11.21) WILD-TYPE      8     27     25      1
D21V12, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            58                               8
  CLUS_2                            24                              27
  CLUS_3                            58                              25
  CLUS_4                            19                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q12) MUTATED       12     58     15     18
  AMP PEAK 22(20Q12) WILD-TYPE     23      3     14      3
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         12                           23
  CLUS_2                         58                            3
  CLUS_3                         15                           14
  CLUS_4                         18                            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q12) MUTATED       11     61     31
  AMP PEAK 22(20Q12) WILD-TYPE     31     11      1
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         11                           31
  CLUS_2                         61                           11
  CLUS_3                         31                            1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q12) MUTATED       37    152     77     49
  AMP PEAK 22(20Q12) WILD-TYPE      0      3    115      5
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         37                            0
  CLUS_2                        152                            3
  CLUS_3                         77                          115
  CLUS_4                         49                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q12) MUTATED      112     49     45
  AMP PEAK 22(20Q12) WILD-TYPE      6     43     26
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                        112                            6
  CLUS_2                         49                           43
  CLUS_3                         45                           26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q12) MUTATED       64     94     20     51
  AMP PEAK 22(20Q12) WILD-TYPE     14     33      6     43
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         64                           14
  CLUS_2                         94                           33
  CLUS_3                         20                            6
  CLUS_4                         51                           43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20Q12) MUTATED       52     37     41     48     37     14
  AMP PEAK 22(20Q12) WILD-TYPE      7     11     15     20     31     12
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         52                            7
  CLUS_2                         37                           11
  CLUS_3                         41                           15
  CLUS_4                         48                           20
  CLUS_5                         37                           31
  CLUS_6                         14                           12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q12) MUTATED       26    110     52     29     87
  AMP PEAK 22(20Q12) WILD-TYPE      7      3     19     61     29
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         26                            7
  CLUS_2                        110                            3
  CLUS_3                         52                           19
  CLUS_4                         29                           61
  CLUS_5                         87                           29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q12) MUTATED       70     83     35    111      5
  AMP PEAK 22(20Q12) WILD-TYPE      5     13     53     17     31
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         70                            5
  CLUS_2                         83                           13
  CLUS_3                         35                           53
  CLUS_4                        111                           17
  CLUS_5                          5                           31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q12) MUTATED      118     46    121
  AMP PEAK 22(20Q12) WILD-TYPE     42     19     51
D22V9, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                        118                           42
  CLUS_2                         46                           19
  CLUS_3                        121                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q12) MUTATED       92     37     68     88
  AMP PEAK 22(20Q12) WILD-TYPE     43     13      9     47
D22V10, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         92                           43
  CLUS_2                         37                           13
  CLUS_3                         68                            9
  CLUS_4                         88                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q12) MUTATED       75     34     52
  AMP PEAK 22(20Q12) WILD-TYPE      4     44     11
D22V11, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         75                            4
  CLUS_2                         34                           44
  CLUS_3                         52                           11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q12) MUTATED       58     24     60     19
  AMP PEAK 22(20Q12) WILD-TYPE      8     27     23      1
D22V12, multiclass
        clus
vv       AMP PEAK 22(20Q12) MUTATED AMP PEAK 22(20Q12) WILD-TYPE
  CLUS_1                         58                            8
  CLUS_2                         24                           27
  CLUS_3                         60                           23
  CLUS_4                         19                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(20Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.32) MUTATED       13     58     17     18
  AMP PEAK 23(20Q13.32) WILD-TYPE     22      3     12      3
D23V1, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            13                              22
  CLUS_2                            58                               3
  CLUS_3                            17                              12
  CLUS_4                            18                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.32) MUTATED       12     63     31
  AMP PEAK 23(20Q13.32) WILD-TYPE     30      9      1
D23V2, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            12                              30
  CLUS_2                            63                               9
  CLUS_3                            31                               1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.32) MUTATED       37    151     79     50
  AMP PEAK 23(20Q13.32) WILD-TYPE      0      4    113      4
D23V3, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            37                               0
  CLUS_2                           151                               4
  CLUS_3                            79                             113
  CLUS_4                            50                               4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.32) MUTATED      111     49     45
  AMP PEAK 23(20Q13.32) WILD-TYPE      7     43     26
D23V4, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                           111                               7
  CLUS_2                            49                              43
  CLUS_3                            45                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.32) MUTATED       64     95     21     52
  AMP PEAK 23(20Q13.32) WILD-TYPE     14     32      5     42
D23V5, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            64                              14
  CLUS_2                            95                              32
  CLUS_3                            21                               5
  CLUS_4                            52                              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20Q13.32) MUTATED       52     38     41     50     37     14
  AMP PEAK 23(20Q13.32) WILD-TYPE      7     10     15     18     31     12
D23V6, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            52                               7
  CLUS_2                            38                              10
  CLUS_3                            41                              15
  CLUS_4                            50                              18
  CLUS_5                            37                              31
  CLUS_6                            14                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q13.32) MUTATED       26    110     52     30     89
  AMP PEAK 23(20Q13.32) WILD-TYPE      7      3     19     60     27
D23V7, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            26                               7
  CLUS_2                           110                               3
  CLUS_3                            52                              19
  CLUS_4                            30                              60
  CLUS_5                            89                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20Q13.32) MUTATED       70     83     35    112      7
  AMP PEAK 23(20Q13.32) WILD-TYPE      5     13     53     16     29
D23V8, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            70                               5
  CLUS_2                            83                              13
  CLUS_3                            35                              53
  CLUS_4                           112                              16
  CLUS_5                             7                              29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.32) MUTATED      119     46    123
  AMP PEAK 23(20Q13.32) WILD-TYPE     41     19     49
D23V9, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                           119                              41
  CLUS_2                            46                              19
  CLUS_3                           123                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.32) MUTATED       93     37     68     90
  AMP PEAK 23(20Q13.32) WILD-TYPE     42     13      9     45
D23V10, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            93                              42
  CLUS_2                            37                              13
  CLUS_3                            68                               9
  CLUS_4                            90                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20Q13.32) MUTATED       75     35     52
  AMP PEAK 23(20Q13.32) WILD-TYPE      4     43     11
D23V11, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            75                               4
  CLUS_2                            35                              43
  CLUS_3                            52                              11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20Q13.32) MUTATED       58     25     60     19
  AMP PEAK 23(20Q13.32) WILD-TYPE      8     26     23      1
D23V12, multiclass
        clus
vv       AMP PEAK 23(20Q13.32) MUTATED AMP PEAK 23(20Q13.32) WILD-TYPE
  CLUS_1                            58                               8
  CLUS_2                            25                              26
  CLUS_3                            60                              23
  CLUS_4                            19                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED        9     36      4     10
  DEL PEAK  1(1P36.11) WILD-TYPE     26     25     25     11
D24V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                           36                             25
  CLUS_3                            4                             25
  CLUS_4                           10                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED        9     33     17
  DEL PEAK  1(1P36.11) WILD-TYPE     33     39     15
D24V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                           33                             39
  CLUS_3                           17                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       23     93     31     18
  DEL PEAK  1(1P36.11) WILD-TYPE     14     62    161     36
D24V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           23                             14
  CLUS_2                           93                             62
  CLUS_3                           31                            161
  CLUS_4                           18                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       61     19     24
  DEL PEAK  1(1P36.11) WILD-TYPE     57     73     47
D24V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           61                             57
  CLUS_2                           19                             73
  CLUS_3                           24                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       29     58     10     24
  DEL PEAK  1(1P36.11) WILD-TYPE     49     69     16     70
D24V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           29                             49
  CLUS_2                           58                             69
  CLUS_3                           10                             16
  CLUS_4                           24                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       21     22     29     24     15     10
  DEL PEAK  1(1P36.11) WILD-TYPE     38     26     27     44     53     16
D24V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           21                             38
  CLUS_2                           22                             26
  CLUS_3                           29                             27
  CLUS_4                           24                             44
  CLUS_5                           15                             53
  CLUS_6                           10                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       11     58     27     10     52
  DEL PEAK  1(1P36.11) WILD-TYPE     22     55     44     80     64
D24V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           11                             22
  CLUS_2                           58                             55
  CLUS_3                           27                             44
  CLUS_4                           10                             80
  CLUS_5                           52                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       38     43     12     61      4
  DEL PEAK  1(1P36.11) WILD-TYPE     37     53     76     67     32
D24V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           38                             37
  CLUS_2                           43                             53
  CLUS_3                           12                             76
  CLUS_4                           61                             67
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       57     23     69
  DEL PEAK  1(1P36.11) WILD-TYPE    103     42    103
D24V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           57                            103
  CLUS_2                           23                             42
  CLUS_3                           69                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       45     17     41     46
  DEL PEAK  1(1P36.11) WILD-TYPE     90     33     36     89
D24V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           45                             90
  CLUS_2                           17                             33
  CLUS_3                           41                             36
  CLUS_4                           46                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       39     13     28
  DEL PEAK  1(1P36.11) WILD-TYPE     40     65     35
D24V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           39                             40
  CLUS_2                           13                             65
  CLUS_3                           28                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       25     11     29     15
  DEL PEAK  1(1P36.11) WILD-TYPE     41     40     54      5
D24V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           25                             41
  CLUS_2                           11                             40
  CLUS_3                           29                             54
  CLUS_4                           15                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       10     23      2      5
  DEL PEAK  2(1P33) WILD-TYPE     25     38     27     16
D25V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          25
  CLUS_2                        23                          38
  CLUS_3                         2                          27
  CLUS_4                         5                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED        9     21     10
  DEL PEAK  2(1P33) WILD-TYPE     33     51     22
D25V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         9                          33
  CLUS_2                        21                          51
  CLUS_3                        10                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       18     73     23      7
  DEL PEAK  2(1P33) WILD-TYPE     19     82    169     47
D25V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        18                          19
  CLUS_2                        73                          82
  CLUS_3                        23                         169
  CLUS_4                         7                          47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       47     13     19
  DEL PEAK  2(1P33) WILD-TYPE     71     79     52
D25V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        47                          71
  CLUS_2                        13                          79
  CLUS_3                        19                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       23     38      7     23
  DEL PEAK  2(1P33) WILD-TYPE     55     89     19     71
D25V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        23                          55
  CLUS_2                        38                          89
  CLUS_3                         7                          19
  CLUS_4                        23                          71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P33) MUTATED       16     15     20     16     15      9
  DEL PEAK  2(1P33) WILD-TYPE     43     33     36     52     53     17
D25V6, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        16                          43
  CLUS_2                        15                          33
  CLUS_3                        20                          36
  CLUS_4                        16                          52
  CLUS_5                        15                          53
  CLUS_6                         9                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED        7     41     20      9     37
  DEL PEAK  2(1P33) WILD-TYPE     26     72     51     81     79
D25V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        41                          72
  CLUS_3                        20                          51
  CLUS_4                         9                          81
  CLUS_5                        37                          79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       32     26     11     38      7
  DEL PEAK  2(1P33) WILD-TYPE     43     70     77     90     29
D25V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        32                          43
  CLUS_2                        26                          70
  CLUS_3                        11                          77
  CLUS_4                        38                          90
  CLUS_5                         7                          29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       41     20     46
  DEL PEAK  2(1P33) WILD-TYPE    119     45    126
D25V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        41                         119
  CLUS_2                        20                          45
  CLUS_3                        46                         126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       33     12     29     33
  DEL PEAK  2(1P33) WILD-TYPE    102     38     48    102
D25V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        33                         102
  CLUS_2                        12                          38
  CLUS_3                        29                          48
  CLUS_4                        33                         102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       28     10     22
  DEL PEAK  2(1P33) WILD-TYPE     51     68     41
D25V11, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        28                          51
  CLUS_2                        10                          68
  CLUS_3                        22                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       18      5     24     13
  DEL PEAK  2(1P33) WILD-TYPE     48     46     59      7
D25V12, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        18                          48
  CLUS_2                         5                          46
  CLUS_3                        24                          59
  CLUS_4                        13                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  3(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED        9     21      3      4
  DEL PEAK  3(1P13.1) WILD-TYPE     26     40     26     17
D26V1, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           9                            26
  CLUS_2                          21                            40
  CLUS_3                           3                            26
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED        8     20      9
  DEL PEAK  3(1P13.1) WILD-TYPE     34     52     23
D26V2, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          20                            52
  CLUS_3                           9                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED       16     70     26      4
  DEL PEAK  3(1P13.1) WILD-TYPE     21     85    166     50
D26V3, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          16                            21
  CLUS_2                          70                            85
  CLUS_3                          26                           166
  CLUS_4                           4                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       42     16     18
  DEL PEAK  3(1P13.1) WILD-TYPE     76     76     53
D26V4, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          42                            76
  CLUS_2                          16                            76
  CLUS_3                          18                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED       22     37      6     21
  DEL PEAK  3(1P13.1) WILD-TYPE     56     90     20     73
D26V5, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          22                            56
  CLUS_2                          37                            90
  CLUS_3                           6                            20
  CLUS_4                          21                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.1) MUTATED       16     12     18     18     15      7
  DEL PEAK  3(1P13.1) WILD-TYPE     43     36     38     50     53     19
D26V6, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          16                            43
  CLUS_2                          12                            36
  CLUS_3                          18                            38
  CLUS_4                          18                            50
  CLUS_5                          15                            53
  CLUS_6                           7                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.1) MUTATED        6     38     18     10     37
  DEL PEAK  3(1P13.1) WILD-TYPE     27     75     53     80     79
D26V7, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                          38                            75
  CLUS_3                          18                            53
  CLUS_4                          10                            80
  CLUS_5                          37                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.1) MUTATED       30     23     12     38      6
  DEL PEAK  3(1P13.1) WILD-TYPE     45     73     76     90     30
D26V8, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          30                            45
  CLUS_2                          23                            73
  CLUS_3                          12                            76
  CLUS_4                          38                            90
  CLUS_5                           6                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       38     18     45
  DEL PEAK  3(1P13.1) WILD-TYPE    122     47    127
D26V9, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          38                           122
  CLUS_2                          18                            47
  CLUS_3                          45                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED       30     10     27     34
  DEL PEAK  3(1P13.1) WILD-TYPE    105     40     50    101
D26V10, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          30                           105
  CLUS_2                          10                            40
  CLUS_3                          27                            50
  CLUS_4                          34                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.1) MUTATED       24     12     19
  DEL PEAK  3(1P13.1) WILD-TYPE     55     66     44
D26V11, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          24                            55
  CLUS_2                          12                            66
  CLUS_3                          19                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.1) MUTATED       16      5     23     11
  DEL PEAK  3(1P13.1) WILD-TYPE     50     46     60      9
D26V12, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          16                            50
  CLUS_2                           5                            46
  CLUS_3                          23                            60
  CLUS_4                          11                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  4(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q43) MUTATED        2     10      0      2
  DEL PEAK  4(1Q43) WILD-TYPE     33     51     29     19
D27V1, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         2                          33
  CLUS_2                        10                          51
  CLUS_3                         0                          29
  CLUS_4                         2                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED        2      8      4
  DEL PEAK  4(1Q43) WILD-TYPE     40     64     28
D27V2, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         2                          40
  CLUS_2                         8                          64
  CLUS_3                         4                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q43) MUTATED        6     33      7      8
  DEL PEAK  4(1Q43) WILD-TYPE     31    122    185     46
D27V3, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         6                          31
  CLUS_2                        33                         122
  CLUS_3                         7                         185
  CLUS_4                         8                          46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED       22      6     11
  DEL PEAK  4(1Q43) WILD-TYPE     96     86     60
D27V4, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        22                          96
  CLUS_2                         6                          86
  CLUS_3                        11                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q43) MUTATED       13     14      2      9
  DEL PEAK  4(1Q43) WILD-TYPE     65    113     24     85
D27V5, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        13                          65
  CLUS_2                        14                         113
  CLUS_3                         2                          24
  CLUS_4                         9                          85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1Q43) MUTATED        7      7      5      6      8      5
  DEL PEAK  4(1Q43) WILD-TYPE     52     41     51     62     60     21
D27V6, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         7                          52
  CLUS_2                         7                          41
  CLUS_3                         5                          51
  CLUS_4                         6                          62
  CLUS_5                         8                          60
  CLUS_6                         5                          21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q43) MUTATED        2     20     13      2     13
  DEL PEAK  4(1Q43) WILD-TYPE     31     93     58     88    103
D27V7, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                        20                          93
  CLUS_3                        13                          58
  CLUS_4                         2                          88
  CLUS_5                        13                         103
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(1Q43) MUTATED       17     15      3     14      1
  DEL PEAK  4(1Q43) WILD-TYPE     58     81     85    114     35
D27V8, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        17                          58
  CLUS_2                        15                          81
  CLUS_3                         3                          85
  CLUS_4                        14                         114
  CLUS_5                         1                          35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED       22     11     15
  DEL PEAK  4(1Q43) WILD-TYPE    138     54    157
D27V9, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        22                         138
  CLUS_2                        11                          54
  CLUS_3                        15                         157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q43) MUTATED       16      9     17      6
  DEL PEAK  4(1Q43) WILD-TYPE    119     41     60    129
D27V10, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        16                         119
  CLUS_2                         9                          41
  CLUS_3                        17                          60
  CLUS_4                         6                         129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q43) MUTATED       18      3     12
  DEL PEAK  4(1Q43) WILD-TYPE     61     75     51
D27V11, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        18                          61
  CLUS_2                         3                          75
  CLUS_3                        12                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q43) MUTATED       11      3     14      5
  DEL PEAK  4(1Q43) WILD-TYPE     55     48     69     15
D27V12, multiclass
        clus
vv       DEL PEAK  4(1Q43) MUTATED DEL PEAK  4(1Q43) WILD-TYPE
  CLUS_1                        11                          55
  CLUS_2                         3                          48
  CLUS_3                        14                          69
  CLUS_4                         5                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  5(2P21) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        1      4      0      1
  DEL PEAK  5(2P21) WILD-TYPE     34     57     29     20
D28V1, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         1                          34
  CLUS_2                         4                          57
  CLUS_3                         0                          29
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        1      4      1
  DEL PEAK  5(2P21) WILD-TYPE     41     68     31
D28V2, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         1                          41
  CLUS_2                         4                          68
  CLUS_3                         1                          31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        2      7      5      2
  DEL PEAK  5(2P21) WILD-TYPE     35    148    187     52
D28V3, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                          35
  CLUS_2                         7                         148
  CLUS_3                         5                         187
  CLUS_4                         2                          52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        4      2      3
  DEL PEAK  5(2P21) WILD-TYPE    114     90     68
D28V4, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         4                         114
  CLUS_2                         2                          90
  CLUS_3                         3                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        2      6      0      3
  DEL PEAK  5(2P21) WILD-TYPE     76    121     26     91
D28V5, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                          76
  CLUS_2                         6                         121
  CLUS_3                         0                          26
  CLUS_4                         3                          91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2P21) MUTATED        1      3      3      2      2      0
  DEL PEAK  5(2P21) WILD-TYPE     58     45     53     66     66     26
D28V6, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         1                          58
  CLUS_2                         3                          45
  CLUS_3                         3                          53
  CLUS_4                         2                          66
  CLUS_5                         2                          66
  CLUS_6                         0                          26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2P21) MUTATED        1      3      3      2      7
  DEL PEAK  5(2P21) WILD-TYPE     32    110     68     88    109
D28V7, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         1                          32
  CLUS_2                         3                         110
  CLUS_3                         3                          68
  CLUS_4                         2                          88
  CLUS_5                         7                         109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2P21) MUTATED        3      2      2      9      0
  DEL PEAK  5(2P21) WILD-TYPE     72     94     86    119     36
D28V8, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         3                          72
  CLUS_2                         2                          94
  CLUS_3                         2                          86
  CLUS_4                         9                         119
  CLUS_5                         0                          36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        2      3      9
  DEL PEAK  5(2P21) WILD-TYPE    158     62    163
D28V9, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                         158
  CLUS_2                         3                          62
  CLUS_3                         9                         163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        2      2      3      7
  DEL PEAK  5(2P21) WILD-TYPE    133     48     74    128
D28V10, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                         133
  CLUS_2                         2                          48
  CLUS_3                         3                          74
  CLUS_4                         7                         128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P21) MUTATED        3      0      2
  DEL PEAK  5(2P21) WILD-TYPE     76     78     61
D28V11, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         3                          76
  CLUS_2                         0                          78
  CLUS_3                         2                          61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P21) MUTATED        2      0      3      0
  DEL PEAK  5(2P21) WILD-TYPE     64     51     80     20
D28V12, multiclass
        clus
vv       DEL PEAK  5(2P21) MUTATED DEL PEAK  5(2P21) WILD-TYPE
  CLUS_1                         2                          64
  CLUS_2                         0                          51
  CLUS_3                         3                          80
  CLUS_4                         0                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  6(2Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q32.1) MUTATED        2      5      1      1
  DEL PEAK  6(2Q32.1) WILD-TYPE     33     56     28     20
D29V1, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           2                            33
  CLUS_2                           5                            56
  CLUS_3                           1                            28
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED        2      6      1
  DEL PEAK  6(2Q32.1) WILD-TYPE     40     66     31
D29V2, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                           6                            66
  CLUS_3                           1                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q32.1) MUTATED        2      8      3      1
  DEL PEAK  6(2Q32.1) WILD-TYPE     35    147    189     53
D29V3, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                           8                           147
  CLUS_3                           3                           189
  CLUS_4                           1                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED        3      0      2
  DEL PEAK  6(2Q32.1) WILD-TYPE    115     92     69
D29V4, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           3                           115
  CLUS_2                           0                            92
  CLUS_3                           2                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q32.1) MUTATED        1      5      1      2
  DEL PEAK  6(2Q32.1) WILD-TYPE     77    122     25     92
D29V5, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           1                            77
  CLUS_2                           5                           122
  CLUS_3                           1                            25
  CLUS_4                           2                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q32.1) MUTATED        1      1      2      2      2      1
  DEL PEAK  6(2Q32.1) WILD-TYPE     58     47     54     66     66     25
D29V6, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           1                            58
  CLUS_2                           1                            47
  CLUS_3                           2                            54
  CLUS_4                           2                            66
  CLUS_5                           2                            66
  CLUS_6                           1                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q32.1) MUTATED        3      3      0      1      7
  DEL PEAK  6(2Q32.1) WILD-TYPE     30    110     71     89    109
D29V7, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           3                           110
  CLUS_3                           0                            71
  CLUS_4                           1                            89
  CLUS_5                           7                           109
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q32.1) MUTATED        2      2      1      8      1
  DEL PEAK  6(2Q32.1) WILD-TYPE     73     94     87    120     35
D29V8, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           2                            73
  CLUS_2                           2                            94
  CLUS_3                           1                            87
  CLUS_4                           8                           120
  CLUS_5                           1                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED        3      1      9
  DEL PEAK  6(2Q32.1) WILD-TYPE    157     64    163
D29V9, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           3                           157
  CLUS_2                           1                            64
  CLUS_3                           9                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q32.1) MUTATED        3      0      2      8
  DEL PEAK  6(2Q32.1) WILD-TYPE    132     50     75    127
D29V10, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                           0                            50
  CLUS_3                           2                            75
  CLUS_4                           8                           127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q32.1) MUTATED        2      2      1
  DEL PEAK  6(2Q32.1) WILD-TYPE     77     76     62
D29V11, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           2                            77
  CLUS_2                           2                            76
  CLUS_3                           1                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q32.1) MUTATED        2      1      1      1
  DEL PEAK  6(2Q32.1) WILD-TYPE     64     50     82     19
D29V12, multiclass
        clus
vv       DEL PEAK  6(2Q32.1) MUTATED DEL PEAK  6(2Q32.1) WILD-TYPE
  CLUS_1                           2                            64
  CLUS_2                           1                            50
  CLUS_3                           1                            82
  CLUS_4                           1                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  7(3P26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.1) MUTATED        6     14      1      3
  DEL PEAK  7(3P26.1) WILD-TYPE     29     47     28     18
D30V1, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                           6                            29
  CLUS_2                          14                            47
  CLUS_3                           1                            28
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.1) MUTATED        4     14      6
  DEL PEAK  7(3P26.1) WILD-TYPE     38     58     26
D30V2, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                          14                            58
  CLUS_3                           6                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.1) MUTATED       10     40     14      4
  DEL PEAK  7(3P26.1) WILD-TYPE     27    115    178     50
D30V3, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          10                            27
  CLUS_2                          40                           115
  CLUS_3                          14                           178
  CLUS_4                           4                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.1) MUTATED       23      9     13
  DEL PEAK  7(3P26.1) WILD-TYPE     95     83     58
D30V4, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          23                            95
  CLUS_2                           9                            83
  CLUS_3                          13                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.1) MUTATED       14     16      4     14
  DEL PEAK  7(3P26.1) WILD-TYPE     64    111     22     80
D30V5, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          14                            64
  CLUS_2                          16                           111
  CLUS_3                           4                            22
  CLUS_4                          14                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P26.1) MUTATED        9     11      7      7     11      3
  DEL PEAK  7(3P26.1) WILD-TYPE     50     37     49     61     57     23
D30V6, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                           9                            50
  CLUS_2                          11                            37
  CLUS_3                           7                            49
  CLUS_4                           7                            61
  CLUS_5                          11                            57
  CLUS_6                           3                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.1) MUTATED        5     17     13      5     25
  DEL PEAK  7(3P26.1) WILD-TYPE     28     96     58     85     91
D30V7, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                          17                            96
  CLUS_3                          13                            58
  CLUS_4                           5                            85
  CLUS_5                          25                            91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.1) MUTATED       15     14      7     26      3
  DEL PEAK  7(3P26.1) WILD-TYPE     60     82     81    102     33
D30V8, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          15                            60
  CLUS_2                          14                            82
  CLUS_3                           7                            81
  CLUS_4                          26                           102
  CLUS_5                           3                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.1) MUTATED       25      8     27
  DEL PEAK  7(3P26.1) WILD-TYPE    135     57    145
D30V9, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          25                           135
  CLUS_2                           8                            57
  CLUS_3                          27                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.1) MUTATED       18      8     12     22
  DEL PEAK  7(3P26.1) WILD-TYPE    117     42     65    113
D30V10, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          18                           117
  CLUS_2                           8                            42
  CLUS_3                          12                            65
  CLUS_4                          22                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.1) MUTATED       15      3     14
  DEL PEAK  7(3P26.1) WILD-TYPE     64     75     49
D30V11, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          15                            64
  CLUS_2                           3                            75
  CLUS_3                          14                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.1) MUTATED       13      3     12      4
  DEL PEAK  7(3P26.1) WILD-TYPE     53     48     71     16
D30V12, multiclass
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  CLUS_1                          13                            53
  CLUS_2                           3                            48
  CLUS_3                          12                            71
  CLUS_4                           4                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  8(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       10     14      4      4
  DEL PEAK  8(3P14.2) WILD-TYPE     25     47     25     17
D31V1, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          10                            25
  CLUS_2                          14                            47
  CLUS_3                           4                            25
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED        8     17      7
  DEL PEAK  8(3P14.2) WILD-TYPE     34     55     25
D31V2, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          17                            55
  CLUS_3                           7                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED        8     41     27      7
  DEL PEAK  8(3P14.2) WILD-TYPE     29    114    165     47
D31V3, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           8                            29
  CLUS_2                          41                           114
  CLUS_3                          27                           165
  CLUS_4                           7                            47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       27     15     10
  DEL PEAK  8(3P14.2) WILD-TYPE     91     77     61
D31V4, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          27                            91
  CLUS_2                          15                            77
  CLUS_3                          10                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       17     18      4     18
  DEL PEAK  8(3P14.2) WILD-TYPE     61    109     22     76
D31V5, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          17                            61
  CLUS_2                          18                           109
  CLUS_3                           4                            22
  CLUS_4                          18                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.2) MUTATED       13     13     10      5     14      2
  DEL PEAK  8(3P14.2) WILD-TYPE     46     35     46     63     54     24
D31V6, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          13                            46
  CLUS_2                          13                            35
  CLUS_3                          10                            46
  CLUS_4                           5                            63
  CLUS_5                          14                            54
  CLUS_6                           2                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.2) MUTATED        5     25     15      9     26
  DEL PEAK  8(3P14.2) WILD-TYPE     28     88     56     81     90
D31V7, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                          25                            88
  CLUS_3                          15                            56
  CLUS_4                           9                            81
  CLUS_5                          26                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.2) MUTATED       16     21      8     28      7
  DEL PEAK  8(3P14.2) WILD-TYPE     59     75     80    100     29
D31V8, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          16                            59
  CLUS_2                          21                            75
  CLUS_3                           8                            80
  CLUS_4                          28                           100
  CLUS_5                           7                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       30      9     33
  DEL PEAK  8(3P14.2) WILD-TYPE    130     56    139
D31V9, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          30                           130
  CLUS_2                           9                            56
  CLUS_3                          33                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       23      7     17     25
  DEL PEAK  8(3P14.2) WILD-TYPE    112     43     60    110
D31V10, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          23                           112
  CLUS_2                           7                            43
  CLUS_3                          17                            60
  CLUS_4                          25                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       19      5     14
  DEL PEAK  8(3P14.2) WILD-TYPE     60     73     49
D31V11, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          19                            60
  CLUS_2                           5                            73
  CLUS_3                          14                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       13      9     12      4
  DEL PEAK  8(3P14.2) WILD-TYPE     53     42     71     16
D31V12, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          13                            53
  CLUS_2                           9                            42
  CLUS_3                          12                            71
  CLUS_4                           4                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  9(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED        3      7      1      2
  DEL PEAK  9(3Q26.31) WILD-TYPE     32     54     28     19
D32V1, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                            7                             54
  CLUS_3                            1                             28
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED        3      7      3
  DEL PEAK  9(3Q26.31) WILD-TYPE     39     65     29
D32V2, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                            7                             65
  CLUS_3                            3                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED        8     26     12      0
  DEL PEAK  9(3Q26.31) WILD-TYPE     29    129    180     54
D32V3, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                           26                            129
  CLUS_3                           12                            180
  CLUS_4                            0                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       17      6      9
  DEL PEAK  9(3Q26.31) WILD-TYPE    101     86     62
D32V4, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           17                            101
  CLUS_2                            6                             86
  CLUS_3                            9                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED        6     11      3     13
  DEL PEAK  9(3Q26.31) WILD-TYPE     72    116     23     81
D32V5, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            6                             72
  CLUS_2                           11                            116
  CLUS_3                            3                             23
  CLUS_4                           13                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q26.31) MUTATED        4      5      6      6     10      2
  DEL PEAK  9(3Q26.31) WILD-TYPE     55     43     50     62     58     24
D32V6, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            4                             55
  CLUS_2                            5                             43
  CLUS_3                            6                             50
  CLUS_4                            6                             62
  CLUS_5                           10                             58
  CLUS_6                            2                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q26.31) MUTATED        2     18      6      4     14
  DEL PEAK  9(3Q26.31) WILD-TYPE     31     95     65     86    102
D32V7, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                           18                             95
  CLUS_3                            6                             65
  CLUS_4                            4                             86
  CLUS_5                           14                            102
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q26.31) MUTATED        7     16      5     13      3
  DEL PEAK  9(3Q26.31) WILD-TYPE     68     80     83    115     33
D32V8, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            7                             68
  CLUS_2                           16                             80
  CLUS_3                            5                             83
  CLUS_4                           13                            115
  CLUS_5                            3                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       19      4     16
  DEL PEAK  9(3Q26.31) WILD-TYPE    141     61    156
D32V9, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           19                            141
  CLUS_2                            4                             61
  CLUS_3                           16                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED       12      4     11     12
  DEL PEAK  9(3Q26.31) WILD-TYPE    123     46     66    123
D32V10, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           12                            123
  CLUS_2                            4                             46
  CLUS_3                           11                             66
  CLUS_4                           12                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       15      3      5
  DEL PEAK  9(3Q26.31) WILD-TYPE     64     75     58
D32V11, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           15                             64
  CLUS_2                            3                             75
  CLUS_3                            5                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED        7      2      8      6
  DEL PEAK  9(3Q26.31) WILD-TYPE     59     49     75     14
D32V12, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            7                             59
  CLUS_2                            2                             49
  CLUS_3                            8                             75
  CLUS_4                            6                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 10(4P16.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.2) MUTATED        7     29      3      9
  DEL PEAK 10(4P16.2) WILD-TYPE     28     32     26     12
D33V1, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                           7                            28
  CLUS_2                          29                            32
  CLUS_3                           3                            26
  CLUS_4                           9                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED        7     23     18
  DEL PEAK 10(4P16.2) WILD-TYPE     35     49     14
D33V2, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          23                            49
  CLUS_3                          18                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.2) MUTATED       23     75     23     12
  DEL PEAK 10(4P16.2) WILD-TYPE     14     80    169     42
D33V3, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          23                            14
  CLUS_2                          75                            80
  CLUS_3                          23                           169
  CLUS_4                          12                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED       46     14     22
  DEL PEAK 10(4P16.2) WILD-TYPE     72     78     49
D33V4, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          46                            72
  CLUS_2                          14                            78
  CLUS_3                          22                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.2) MUTATED       30     31      9     18
  DEL PEAK 10(4P16.2) WILD-TYPE     48     96     17     76
D33V5, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          30                            48
  CLUS_2                          31                            96
  CLUS_3                           9                            17
  CLUS_4                          18                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4P16.2) MUTATED       22     16     15     14     13      8
  DEL PEAK 10(4P16.2) WILD-TYPE     37     32     41     54     55     18
D33V6, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          22                            37
  CLUS_2                          16                            32
  CLUS_3                          15                            41
  CLUS_4                          14                            54
  CLUS_5                          13                            55
  CLUS_6                           8                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4P16.2) MUTATED        8     44     25      7     43
  DEL PEAK 10(4P16.2) WILD-TYPE     25     69     46     83     73
D33V7, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                           8                            25
  CLUS_2                          44                            69
  CLUS_3                          25                            46
  CLUS_4                           7                            83
  CLUS_5                          43                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4P16.2) MUTATED       33     29      9     51      5
  DEL PEAK 10(4P16.2) WILD-TYPE     42     67     79     77     31
D33V8, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          33                            42
  CLUS_2                          29                            67
  CLUS_3                           9                            79
  CLUS_4                          51                            77
  CLUS_5                           5                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED       44     16     57
  DEL PEAK 10(4P16.2) WILD-TYPE    116     49    115
D33V9, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          44                           116
  CLUS_2                          16                            49
  CLUS_3                          57                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.2) MUTATED       37     11     24     45
  DEL PEAK 10(4P16.2) WILD-TYPE     98     39     53     90
D33V10, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          37                            98
  CLUS_2                          11                            39
  CLUS_3                          24                            53
  CLUS_4                          45                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.2) MUTATED       27      8     23
  DEL PEAK 10(4P16.2) WILD-TYPE     52     70     40
D33V11, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          27                            52
  CLUS_2                           8                            70
  CLUS_3                          23                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.2) MUTATED       21      7     23      7
  DEL PEAK 10(4P16.2) WILD-TYPE     45     44     60     13
D33V12, multiclass
        clus
vv       DEL PEAK 10(4P16.2) MUTATED DEL PEAK 10(4P16.2) WILD-TYPE
  CLUS_1                          21                            45
  CLUS_2                           7                            44
  CLUS_3                          23                            60
  CLUS_4                           7                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 11(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED        9     27      2     11
  DEL PEAK 11(4Q22.1) WILD-TYPE     26     34     27     10
D34V1, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                           9                            26
  CLUS_2                          27                            34
  CLUS_3                           2                            27
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED        7     25     17
  DEL PEAK 11(4Q22.1) WILD-TYPE     35     47     15
D34V2, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          25                            47
  CLUS_3                          17                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       21     81     30     12
  DEL PEAK 11(4Q22.1) WILD-TYPE     16     74    162     42
D34V3, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          21                            16
  CLUS_2                          81                            74
  CLUS_3                          30                           162
  CLUS_4                          12                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       53     16     25
  DEL PEAK 11(4Q22.1) WILD-TYPE     65     76     46
D34V4, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          53                            65
  CLUS_2                          16                            76
  CLUS_3                          25                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       31     38      8     21
  DEL PEAK 11(4Q22.1) WILD-TYPE     47     89     18     73
D34V5, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          31                            47
  CLUS_2                          38                            89
  CLUS_3                           8                            18
  CLUS_4                          21                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q22.1) MUTATED       24     18     18     16     15      7
  DEL PEAK 11(4Q22.1) WILD-TYPE     35     30     38     52     53     19
D34V6, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          24                            35
  CLUS_2                          18                            30
  CLUS_3                          18                            38
  CLUS_4                          16                            52
  CLUS_5                          15                            53
  CLUS_6                           7                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q22.1) MUTATED       12     47     22      7     47
  DEL PEAK 11(4Q22.1) WILD-TYPE     21     66     49     83     69
D34V7, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          12                            21
  CLUS_2                          47                            66
  CLUS_3                          22                            49
  CLUS_4                           7                            83
  CLUS_5                          47                            69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q22.1) MUTATED       38     32      9     51      5
  DEL PEAK 11(4Q22.1) WILD-TYPE     37     64     79     77     31
D34V8, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          38                            37
  CLUS_2                          32                            64
  CLUS_3                           9                            79
  CLUS_4                          51                            77
  CLUS_5                           5                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       53     16     58
  DEL PEAK 11(4Q22.1) WILD-TYPE    107     49    114
D34V9, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          53                           107
  CLUS_2                          16                            49
  CLUS_3                          58                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       38     12     31     46
  DEL PEAK 11(4Q22.1) WILD-TYPE     97     38     46     89
D34V10, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          38                            97
  CLUS_2                          12                            38
  CLUS_3                          31                            46
  CLUS_4                          46                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       34     11     22
  DEL PEAK 11(4Q22.1) WILD-TYPE     45     67     41
D34V11, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          34                            45
  CLUS_2                          11                            67
  CLUS_3                          22                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       26      8     23     10
  DEL PEAK 11(4Q22.1) WILD-TYPE     40     43     60     10
D34V12, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          26                            40
  CLUS_2                           8                            43
  CLUS_3                          23                            60
  CLUS_4                          10                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 12(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED        8     30      4     11
  DEL PEAK 12(4Q35.1) WILD-TYPE     27     31     25     10
D35V1, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          30                            31
  CLUS_3                           4                            25
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED        8     28     17
  DEL PEAK 12(4Q35.1) WILD-TYPE     34     44     15
D35V2, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          28                            44
  CLUS_3                          17                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       20     87     29     16
  DEL PEAK 12(4Q35.1) WILD-TYPE     17     68    163     38
D35V3, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          20                            17
  CLUS_2                          87                            68
  CLUS_3                          29                           163
  CLUS_4                          16                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       56     13     26
  DEL PEAK 12(4Q35.1) WILD-TYPE     62     79     45
D35V4, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          56                            62
  CLUS_2                          13                            79
  CLUS_3                          26                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       32     41     13     21
  DEL PEAK 12(4Q35.1) WILD-TYPE     46     86     13     73
D35V5, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          32                            46
  CLUS_2                          41                            86
  CLUS_3                          13                            13
  CLUS_4                          21                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q35.1) MUTATED       26     16     18     22     16      9
  DEL PEAK 12(4Q35.1) WILD-TYPE     33     32     38     46     52     17
D35V6, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          26                            33
  CLUS_2                          16                            32
  CLUS_3                          18                            38
  CLUS_4                          22                            46
  CLUS_5                          16                            52
  CLUS_6                           9                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q35.1) MUTATED       13     48     25     11     47
  DEL PEAK 12(4Q35.1) WILD-TYPE     20     65     46     79     69
D35V7, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          13                            20
  CLUS_2                          48                            65
  CLUS_3                          25                            46
  CLUS_4                          11                            79
  CLUS_5                          47                            69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q35.1) MUTATED       38     32     12     56      6
  DEL PEAK 12(4Q35.1) WILD-TYPE     37     64     76     72     30
D35V8, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          38                            37
  CLUS_2                          32                            64
  CLUS_3                          12                            76
  CLUS_4                          56                            72
  CLUS_5                           6                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       55     17     62
  DEL PEAK 12(4Q35.1) WILD-TYPE    105     48    110
D35V9, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          55                           105
  CLUS_2                          17                            48
  CLUS_3                          62                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       39     16     30     49
  DEL PEAK 12(4Q35.1) WILD-TYPE     96     34     47     86
D35V10, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          39                            96
  CLUS_2                          16                            34
  CLUS_3                          30                            47
  CLUS_4                          49                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       35      8     25
  DEL PEAK 12(4Q35.1) WILD-TYPE     44     70     38
D35V11, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          35                            44
  CLUS_2                           8                            70
  CLUS_3                          25                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       26      8     25      9
  DEL PEAK 12(4Q35.1) WILD-TYPE     40     43     58     11
D35V12, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          26                            40
  CLUS_2                           8                            43
  CLUS_3                          25                            58
  CLUS_4                           9                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 13(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED        8     20      0      6
  DEL PEAK 13(5Q11.2) WILD-TYPE     27     41     29     15
D36V1, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          20                            41
  CLUS_3                           0                            29
  CLUS_4                           6                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED        7     12     15
  DEL PEAK 13(5Q11.2) WILD-TYPE     35     60     17
D36V2, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          12                            60
  CLUS_3                          15                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED       12     54     17     17
  DEL PEAK 13(5Q11.2) WILD-TYPE     25    101    175     37
D36V3, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          12                            25
  CLUS_2                          54                           101
  CLUS_3                          17                           175
  CLUS_4                          17                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED       35     12     19
  DEL PEAK 13(5Q11.2) WILD-TYPE     83     80     52
D36V4, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          35                            83
  CLUS_2                          12                            80
  CLUS_3                          19                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED       28     21      8     12
  DEL PEAK 13(5Q11.2) WILD-TYPE     50    106     18     82
D36V5, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          28                            50
  CLUS_2                          21                           106
  CLUS_3                           8                            18
  CLUS_4                          12                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q11.2) MUTATED       22     12      8     12     11      4
  DEL PEAK 13(5Q11.2) WILD-TYPE     37     36     48     56     57     22
D36V6, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          22                            37
  CLUS_2                          12                            36
  CLUS_3                           8                            48
  CLUS_4                          12                            56
  CLUS_5                          11                            57
  CLUS_6                           4                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q11.2) MUTATED       10     31     18      4     34
  DEL PEAK 13(5Q11.2) WILD-TYPE     23     82     53     86     82
D36V7, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          10                            23
  CLUS_2                          31                            82
  CLUS_3                          18                            53
  CLUS_4                           4                            86
  CLUS_5                          34                            82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q11.2) MUTATED       27     23      8     35      4
  DEL PEAK 13(5Q11.2) WILD-TYPE     48     73     80     93     32
D36V8, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          27                            48
  CLUS_2                          23                            73
  CLUS_3                           8                            80
  CLUS_4                          35                            93
  CLUS_5                           4                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED       33     15     42
  DEL PEAK 13(5Q11.2) WILD-TYPE    127     50    130
D36V9, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          33                           127
  CLUS_2                          15                            50
  CLUS_3                          42                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED       26     14     17     33
  DEL PEAK 13(5Q11.2) WILD-TYPE    109     36     60    102
D36V10, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          26                           109
  CLUS_2                          14                            36
  CLUS_3                          17                            60
  CLUS_4                          33                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED       25      5     17
  DEL PEAK 13(5Q11.2) WILD-TYPE     54     73     46
D36V11, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          25                            54
  CLUS_2                           5                            73
  CLUS_3                          17                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED       18      7     19      3
  DEL PEAK 13(5Q11.2) WILD-TYPE     48     44     64     17
D36V12, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          18                            48
  CLUS_2                           7                            44
  CLUS_3                          19                            64
  CLUS_4                           3                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 14(5Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q21.3) MUTATED        8     24      4      5
  DEL PEAK 14(5Q21.3) WILD-TYPE     27     37     25     16
D37V1, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          24                            37
  CLUS_3                           4                            25
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.3) MUTATED        7     19     15
  DEL PEAK 14(5Q21.3) WILD-TYPE     35     53     17
D37V2, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          19                            53
  CLUS_3                          15                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q21.3) MUTATED       16     62     26     21
  DEL PEAK 14(5Q21.3) WILD-TYPE     21     93    166     33
D37V3, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          16                            21
  CLUS_2                          62                            93
  CLUS_3                          26                           166
  CLUS_4                          21                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.3) MUTATED       43     17     23
  DEL PEAK 14(5Q21.3) WILD-TYPE     75     75     48
D37V4, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          43                            75
  CLUS_2                          17                            75
  CLUS_3                          23                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q21.3) MUTATED       31     31      7     20
  DEL PEAK 14(5Q21.3) WILD-TYPE     47     96     19     74
D37V5, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          31                            47
  CLUS_2                          31                            96
  CLUS_3                           7                            19
  CLUS_4                          20                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q21.3) MUTATED       23     14     12     19     14      7
  DEL PEAK 14(5Q21.3) WILD-TYPE     36     34     44     49     54     19
D37V6, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          23                            36
  CLUS_2                          14                            34
  CLUS_3                          12                            44
  CLUS_4                          19                            49
  CLUS_5                          14                            54
  CLUS_6                           7                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q21.3) MUTATED       11     41     18     10     41
  DEL PEAK 14(5Q21.3) WILD-TYPE     22     72     53     80     75
D37V7, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          11                            22
  CLUS_2                          41                            72
  CLUS_3                          18                            53
  CLUS_4                          10                            80
  CLUS_5                          41                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q21.3) MUTATED       28     33     11     45      4
  DEL PEAK 14(5Q21.3) WILD-TYPE     47     63     77     83     32
D37V8, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          28                            47
  CLUS_2                          33                            63
  CLUS_3                          11                            77
  CLUS_4                          45                            83
  CLUS_5                           4                            32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.3) MUTATED       47     18     49
  DEL PEAK 14(5Q21.3) WILD-TYPE    113     47    123
D37V9, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          47                           113
  CLUS_2                          18                            47
  CLUS_3                          49                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q21.3) MUTATED       38     15     24     37
  DEL PEAK 14(5Q21.3) WILD-TYPE     97     35     53     98
D37V10, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          38                            97
  CLUS_2                          15                            35
  CLUS_3                          24                            53
  CLUS_4                          37                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q21.3) MUTATED       30     14     19
  DEL PEAK 14(5Q21.3) WILD-TYPE     49     64     44
D37V11, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          30                            49
  CLUS_2                          14                            64
  CLUS_3                          19                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q21.3) MUTATED       24     15     19      5
  DEL PEAK 14(5Q21.3) WILD-TYPE     42     36     64     15
D37V12, multiclass
        clus
vv       DEL PEAK 14(5Q21.3) MUTATED DEL PEAK 14(5Q21.3) WILD-TYPE
  CLUS_1                          24                            42
  CLUS_2                          15                            36
  CLUS_3                          19                            64
  CLUS_4                           5                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 15(5Q23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.1) MUTATED        8     20      2      5
  DEL PEAK 15(5Q23.1) WILD-TYPE     27     41     27     16
D38V1, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                           8                            27
  CLUS_2                          20                            41
  CLUS_3                           2                            27
  CLUS_4                           5                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.1) MUTATED        6     15     14
  DEL PEAK 15(5Q23.1) WILD-TYPE     36     57     18
D38V2, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                          15                            57
  CLUS_3                          14                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.1) MUTATED       14     58     23     21
  DEL PEAK 15(5Q23.1) WILD-TYPE     23     97    169     33
D38V3, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          14                            23
  CLUS_2                          58                            97
  CLUS_3                          23                           169
  CLUS_4                          21                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.1) MUTATED       42     17     21
  DEL PEAK 15(5Q23.1) WILD-TYPE     76     75     50
D38V4, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          42                            76
  CLUS_2                          17                            75
  CLUS_3                          21                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.1) MUTATED       29     30      7     16
  DEL PEAK 15(5Q23.1) WILD-TYPE     49     97     19     78
D38V5, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          29                            49
  CLUS_2                          30                            97
  CLUS_3                           7                            19
  CLUS_4                          16                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(5Q23.1) MUTATED       21     12     11     18     13      7
  DEL PEAK 15(5Q23.1) WILD-TYPE     38     36     45     50     55     19
D38V6, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          21                            38
  CLUS_2                          12                            36
  CLUS_3                          11                            45
  CLUS_4                          18                            50
  CLUS_5                          13                            55
  CLUS_6                           7                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.1) MUTATED       10     41     18      8     35
  DEL PEAK 15(5Q23.1) WILD-TYPE     23     72     53     82     81
D38V7, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          10                            23
  CLUS_2                          41                            72
  CLUS_3                          18                            53
  CLUS_4                           8                            82
  CLUS_5                          35                            81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(5Q23.1) MUTATED       27     31     11     40      3
  DEL PEAK 15(5Q23.1) WILD-TYPE     48     65     77     88     33
D38V8, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          27                            48
  CLUS_2                          31                            65
  CLUS_3                          11                            77
  CLUS_4                          40                            88
  CLUS_5                           3                            33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.1) MUTATED       44     18     43
  DEL PEAK 15(5Q23.1) WILD-TYPE    116     47    129
D38V9, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          44                           116
  CLUS_2                          18                            47
  CLUS_3                          43                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.1) MUTATED       33     14     26     32
  DEL PEAK 15(5Q23.1) WILD-TYPE    102     36     51    103
D38V10, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          33                           102
  CLUS_2                          14                            36
  CLUS_3                          26                            51
  CLUS_4                          32                           103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(5Q23.1) MUTATED       30     11     19
  DEL PEAK 15(5Q23.1) WILD-TYPE     49     67     44
D38V11, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          30                            49
  CLUS_2                          11                            67
  CLUS_3                          19                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(5Q23.1) MUTATED       24     12     18      6
  DEL PEAK 15(5Q23.1) WILD-TYPE     42     39     65     14
D38V12, multiclass
        clus
vv       DEL PEAK 15(5Q23.1) MUTATED DEL PEAK 15(5Q23.1) WILD-TYPE
  CLUS_1                          24                            42
  CLUS_2                          12                            39
  CLUS_3                          18                            65
  CLUS_4                           6                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 16(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED        5      7      5      3
  DEL PEAK 16(6P25.3) WILD-TYPE     30     54     24     18
D39V1, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           5                            30
  CLUS_2                           7                            54
  CLUS_3                           5                            24
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED        7     10      3
  DEL PEAK 16(6P25.3) WILD-TYPE     35     62     29
D39V2, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           7                            35
  CLUS_2                          10                            62
  CLUS_3                           3                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       11     13     20     11
  DEL PEAK 16(6P25.3) WILD-TYPE     26    142    172     43
D39V3, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          11                            26
  CLUS_2                          13                           142
  CLUS_3                          20                           172
  CLUS_4                          11                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       20      5      7
  DEL PEAK 16(6P25.3) WILD-TYPE     98     87     64
D39V4, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          20                            98
  CLUS_2                           5                            87
  CLUS_3                           7                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       15     10      4      7
  DEL PEAK 16(6P25.3) WILD-TYPE     63    117     22     87
D39V5, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          15                            63
  CLUS_2                          10                           117
  CLUS_3                           4                            22
  CLUS_4                           7                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(6P25.3) MUTATED        7      7      6      5      6      5
  DEL PEAK 16(6P25.3) WILD-TYPE     52     41     50     63     62     21
D39V6, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           7                            52
  CLUS_2                           7                            41
  CLUS_3                           6                            50
  CLUS_4                           5                            63
  CLUS_5                           6                            62
  CLUS_6                           5                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED        3     14     11     11     15
  DEL PEAK 16(6P25.3) WILD-TYPE     30     99     60     79    101
D39V7, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                          14                            99
  CLUS_3                          11                            60
  CLUS_4                          11                            79
  CLUS_5                          15                           101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6P25.3) MUTATED        7     14     11     16      6
  DEL PEAK 16(6P25.3) WILD-TYPE     68     82     77    112     30
D39V8, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           7                            68
  CLUS_2                          14                            82
  CLUS_3                          11                            77
  CLUS_4                          16                           112
  CLUS_5                           6                            30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       18     10     22
  DEL PEAK 16(6P25.3) WILD-TYPE    142     55    150
D39V9, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          18                           142
  CLUS_2                          10                            55
  CLUS_3                          22                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED       18      6      8     18
  DEL PEAK 16(6P25.3) WILD-TYPE    117     44     69    117
D39V10, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          18                           117
  CLUS_2                           6                            44
  CLUS_3                           8                            69
  CLUS_4                          18                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6P25.3) MUTATED       10      5     10
  DEL PEAK 16(6P25.3) WILD-TYPE     69     73     53
D39V11, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          10                            69
  CLUS_2                           5                            73
  CLUS_3                          10                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6P25.3) MUTATED        8      5     11      1
  DEL PEAK 16(6P25.3) WILD-TYPE     58     46     72     19
D39V12, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           8                            58
  CLUS_2                           5                            46
  CLUS_3                          11                            72
  CLUS_4                           1                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 17(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED        3     11      5      4
  DEL PEAK 17(6Q26) WILD-TYPE     32     50     24     17
D40V1, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         3                          32
  CLUS_2                        11                          50
  CLUS_3                         5                          24
  CLUS_4                         4                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED        4     13      6
  DEL PEAK 17(6Q26) WILD-TYPE     38     59     26
D40V2, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         4                          38
  CLUS_2                        13                          59
  CLUS_3                         6                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       11     22     21      6
  DEL PEAK 17(6Q26) WILD-TYPE     26    133    171     48
D40V3, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        11                          26
  CLUS_2                        22                         133
  CLUS_3                        21                         171
  CLUS_4                         6                          48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       18      9      8
  DEL PEAK 17(6Q26) WILD-TYPE    100     83     63
D40V4, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        18                         100
  CLUS_2                         9                          83
  CLUS_3                         8                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       13     16      7      8
  DEL PEAK 17(6Q26) WILD-TYPE     65    111     19     86
D40V5, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        13                          65
  CLUS_2                        16                         111
  CLUS_3                         7                          19
  CLUS_4                         8                          86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(6Q26) MUTATED       10      7      7      8      5      7
  DEL PEAK 17(6Q26) WILD-TYPE     49     41     49     60     63     19
D40V6, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        10                          49
  CLUS_2                         7                          41
  CLUS_3                         7                          49
  CLUS_4                         8                          60
  CLUS_5                         5                          63
  CLUS_6                         7                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q26) MUTATED        4      9     11     11     24
  DEL PEAK 17(6Q26) WILD-TYPE     29    104     60     79     92
D40V7, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         4                          29
  CLUS_2                         9                         104
  CLUS_3                        11                          60
  CLUS_4                        11                          79
  CLUS_5                        24                          92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(6Q26) MUTATED        8     14     10     24      3
  DEL PEAK 17(6Q26) WILD-TYPE     67     82     78    104     33
D40V8, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         8                          67
  CLUS_2                        14                          82
  CLUS_3                        10                          78
  CLUS_4                        24                         104
  CLUS_5                         3                          33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       20     10     27
  DEL PEAK 17(6Q26) WILD-TYPE    140     55    145
D40V9, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        20                         140
  CLUS_2                        10                          55
  CLUS_3                        27                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED       21      6     10     20
  DEL PEAK 17(6Q26) WILD-TYPE    114     44     67    115
D40V10, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        21                         114
  CLUS_2                         6                          44
  CLUS_3                        10                          67
  CLUS_4                        20                         115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(6Q26) MUTATED       11      7     10
  DEL PEAK 17(6Q26) WILD-TYPE     68     71     53
D40V11, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                        11                          68
  CLUS_2                         7                          71
  CLUS_3                        10                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(6Q26) MUTATED        9      4     14      1
  DEL PEAK 17(6Q26) WILD-TYPE     57     47     69     19
D40V12, multiclass
        clus
vv       DEL PEAK 17(6Q26) MUTATED DEL PEAK 17(6Q26) WILD-TYPE
  CLUS_1                         9                          57
  CLUS_2                         4                          47
  CLUS_3                        14                          69
  CLUS_4                         1                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 18(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        1      2      0      0
  DEL PEAK 18(7Q31.1) WILD-TYPE     34     59     29     21
D41V1, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           1                            34
  CLUS_2                           2                            59
  CLUS_3                           0                            29
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        0      2      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     42     70     31
D41V2, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           0                            42
  CLUS_2                           2                            70
  CLUS_3                           1                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        1      7      4      0
  DEL PEAK 18(7Q31.1) WILD-TYPE     36    148    188     54
D41V3, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                           7                           148
  CLUS_3                           4                           188
  CLUS_4                           0                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        5      2      1
  DEL PEAK 18(7Q31.1) WILD-TYPE    113     90     70
D41V4, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           5                           113
  CLUS_2                           2                            90
  CLUS_3                           1                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        2      1      1      5
  DEL PEAK 18(7Q31.1) WILD-TYPE     76    126     25     89
D41V5, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           2                            76
  CLUS_2                           1                           126
  CLUS_3                           1                            25
  CLUS_4                           5                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(7Q31.1) MUTATED        0      1      1      2      4      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     59     47     55     66     64     25
D41V6, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           0                            59
  CLUS_2                           1                            47
  CLUS_3                           1                            55
  CLUS_4                           2                            66
  CLUS_5                           4                            64
  CLUS_6                           1                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(7Q31.1) MUTATED        1      6      0      1      4
  DEL PEAK 18(7Q31.1) WILD-TYPE     32    107     71     89    112
D41V7, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           6                           107
  CLUS_3                           0                            71
  CLUS_4                           1                            89
  CLUS_5                           4                           112
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(7Q31.1) MUTATED        5      1      1      4      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     70     95     87    124     35
D41V8, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           5                            70
  CLUS_2                           1                            95
  CLUS_3                           1                            87
  CLUS_4                           4                           124
  CLUS_5                           1                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        6      1      5
  DEL PEAK 18(7Q31.1) WILD-TYPE    154     64    167
D41V9, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           6                           154
  CLUS_2                           1                            64
  CLUS_3                           5                           167
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        4      2      3      3
  DEL PEAK 18(7Q31.1) WILD-TYPE    131     48     74    132
D41V10, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           4                           131
  CLUS_2                           2                            48
  CLUS_3                           3                            74
  CLUS_4                           3                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(7Q31.1) MUTATED        4      2      1
  DEL PEAK 18(7Q31.1) WILD-TYPE     75     76     62
D41V11, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           4                            75
  CLUS_2                           2                            76
  CLUS_3                           1                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(7Q31.1) MUTATED        5      1      1      0
  DEL PEAK 18(7Q31.1) WILD-TYPE     61     50     82     20
D41V12, multiclass
        clus
vv       DEL PEAK 18(7Q31.1) MUTATED DEL PEAK 18(7Q31.1) WILD-TYPE
  CLUS_1                           5                            61
  CLUS_2                           1                            50
  CLUS_3                           1                            82
  CLUS_4                           0                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 19(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.3) MUTATED       12     33      6     11
  DEL PEAK 19(8P23.3) WILD-TYPE     23     28     23     10
D42V1, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          12                            23
  CLUS_2                          33                            28
  CLUS_3                           6                            23
  CLUS_4                          11                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       10     29     23
  DEL PEAK 19(8P23.3) WILD-TYPE     32     43      9
D42V2, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          10                            32
  CLUS_2                          29                            43
  CLUS_3                          23                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.3) MUTATED        7    105     30     40
  DEL PEAK 19(8P23.3) WILD-TYPE     30     50    162     14
D42V3, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                           7                            30
  CLUS_2                         105                            50
  CLUS_3                          30                           162
  CLUS_4                          40                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       69     24     25
  DEL PEAK 19(8P23.3) WILD-TYPE     49     68     46
D42V4, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          69                            49
  CLUS_2                          24                            68
  CLUS_3                          25                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.3) MUTATED       42     45     11     26
  DEL PEAK 19(8P23.3) WILD-TYPE     36     82     15     68
D42V5, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          42                            36
  CLUS_2                          45                            82
  CLUS_3                          11                            15
  CLUS_4                          26                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P23.3) MUTATED       31     20     25     26     17      5
  DEL PEAK 19(8P23.3) WILD-TYPE     28     28     31     42     51     21
D42V6, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          31                            28
  CLUS_2                          20                            28
  CLUS_3                          25                            31
  CLUS_4                          26                            42
  CLUS_5                          17                            51
  CLUS_6                           5                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P23.3) MUTATED       15     56     34     13     58
  DEL PEAK 19(8P23.3) WILD-TYPE     18     57     37     77     58
D42V7, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          15                            18
  CLUS_2                          56                            57
  CLUS_3                          34                            37
  CLUS_4                          13                            77
  CLUS_5                          58                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P23.3) MUTATED       46     41     16     68      5
  DEL PEAK 19(8P23.3) WILD-TYPE     29     55     72     60     31
D42V8, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          46                            29
  CLUS_2                          41                            55
  CLUS_3                          16                            72
  CLUS_4                          68                            60
  CLUS_5                           5                            31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       71     21     75
  DEL PEAK 19(8P23.3) WILD-TYPE     89     44     97
D42V9, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          71                            89
  CLUS_2                          21                            44
  CLUS_3                          75                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.3) MUTATED       50     21     43     53
  DEL PEAK 19(8P23.3) WILD-TYPE     85     29     34     82
D42V10, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          50                            85
  CLUS_2                          21                            29
  CLUS_3                          43                            34
  CLUS_4                          53                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P23.3) MUTATED       46     14     32
  DEL PEAK 19(8P23.3) WILD-TYPE     33     64     31
D42V11, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          46                            33
  CLUS_2                          14                            64
  CLUS_3                          32                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P23.3) MUTATED       34     14     32     12
  DEL PEAK 19(8P23.3) WILD-TYPE     32     37     51      8
D42V12, multiclass
        clus
vv       DEL PEAK 19(8P23.3) MUTATED DEL PEAK 19(8P23.3) WILD-TYPE
  CLUS_1                          34                            32
  CLUS_2                          14                            37
  CLUS_3                          32                            51
  CLUS_4                          12                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 20(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED        9     36      8     11
  DEL PEAK 20(8P22) WILD-TYPE     26     25     21     10
D43V1, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                         9                          26
  CLUS_2                        36                          25
  CLUS_3                         8                          21
  CLUS_4                        11                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED        8     35     21
  DEL PEAK 20(8P22) WILD-TYPE     34     37     11
D43V2, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                         8                          34
  CLUS_2                        35                          37
  CLUS_3                        21                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED        7    115     32     43
  DEL PEAK 20(8P22) WILD-TYPE     30     40    160     11
D43V3, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                         7                          30
  CLUS_2                       115                          40
  CLUS_3                        32                         160
  CLUS_4                        43                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       76     28     27
  DEL PEAK 20(8P22) WILD-TYPE     42     64     44
D43V4, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        76                          42
  CLUS_2                        28                          64
  CLUS_3                        27                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       45     53     12     30
  DEL PEAK 20(8P22) WILD-TYPE     33     74     14     64
D43V5, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        45                          33
  CLUS_2                        53                          74
  CLUS_3                        12                          14
  CLUS_4                        30                          64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8P22) MUTATED       35     23     28     30     19      5
  DEL PEAK 20(8P22) WILD-TYPE     24     25     28     38     49     21
D43V6, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        35                          24
  CLUS_2                        23                          25
  CLUS_3                        28                          28
  CLUS_4                        30                          38
  CLUS_5                        19                          49
  CLUS_6                         5                          21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8P22) MUTATED       16     65     36     14     59
  DEL PEAK 20(8P22) WILD-TYPE     17     48     35     76     57
D43V7, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        16                          17
  CLUS_2                        65                          48
  CLUS_3                        36                          35
  CLUS_4                        14                          76
  CLUS_5                        59                          57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8P22) MUTATED       51     45     19     71      4
  DEL PEAK 20(8P22) WILD-TYPE     24     51     69     57     32
D43V8, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        51                          24
  CLUS_2                        45                          51
  CLUS_3                        19                          69
  CLUS_4                        71                          57
  CLUS_5                         4                          32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       78     26     77
  DEL PEAK 20(8P22) WILD-TYPE     82     39     95
D43V9, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        78                          82
  CLUS_2                        26                          39
  CLUS_3                        77                          95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       55     26     46     54
  DEL PEAK 20(8P22) WILD-TYPE     80     24     31     81
D43V10, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        55                          80
  CLUS_2                        26                          24
  CLUS_3                        46                          31
  CLUS_4                        54                          81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P22) MUTATED       50     18     36
  DEL PEAK 20(8P22) WILD-TYPE     29     60     27
D43V11, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        50                          29
  CLUS_2                        18                          60
  CLUS_3                        36                          27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P22) MUTATED       38     16     37     13
  DEL PEAK 20(8P22) WILD-TYPE     28     35     46      7
D43V12, multiclass
        clus
vv       DEL PEAK 20(8P22) MUTATED DEL PEAK 20(8P22) WILD-TYPE
  CLUS_1                        38                          28
  CLUS_2                        16                          35
  CLUS_3                        37                          46
  CLUS_4                        13                           7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 21(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P11.21) MUTATED        4     13      0      2
  DEL PEAK 21(8P11.21) WILD-TYPE     31     48     29     19
D44V1, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           13                             48
  CLUS_3                            0                             29
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P11.21) MUTATED        2     13      4
  DEL PEAK 21(8P11.21) WILD-TYPE     40     59     28
D44V2, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            2                             40
  CLUS_2                           13                             59
  CLUS_3                            4                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P11.21) MUTATED        4     33      9      0
  DEL PEAK 21(8P11.21) WILD-TYPE     33    122    183     54
D44V3, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            4                             33
  CLUS_2                           33                            122
  CLUS_3                            9                            183
  CLUS_4                            0                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P11.21) MUTATED       16      5      7
  DEL PEAK 21(8P11.21) WILD-TYPE    102     87     64
D44V4, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           16                            102
  CLUS_2                            5                             87
  CLUS_3                            7                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P11.21) MUTATED       12     18      2      4
  DEL PEAK 21(8P11.21) WILD-TYPE     66    109     24     90
D44V5, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           12                             66
  CLUS_2                           18                            109
  CLUS_3                            2                             24
  CLUS_4                            4                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8P11.21) MUTATED        8      6     10      8      3      1
  DEL PEAK 21(8P11.21) WILD-TYPE     51     42     46     60     65     25
D44V6, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            8                             51
  CLUS_2                            6                             42
  CLUS_3                           10                             46
  CLUS_4                            8                             60
  CLUS_5                            3                             65
  CLUS_6                            1                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(8P11.21) MUTATED        4     15      6      3     16
  DEL PEAK 21(8P11.21) WILD-TYPE     29     98     65     87    100
D44V7, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            4                             29
  CLUS_2                           15                             98
  CLUS_3                            6                             65
  CLUS_4                            3                             87
  CLUS_5                           16                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(8P11.21) MUTATED       11      7      5     21      0
  DEL PEAK 21(8P11.21) WILD-TYPE     64     89     83    107     36
D44V8, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                            7                             89
  CLUS_3                            5                             83
  CLUS_4                           21                            107
  CLUS_5                            0                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P11.21) MUTATED       17      4     22
  DEL PEAK 21(8P11.21) WILD-TYPE    143     61    150
D44V9, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           17                            143
  CLUS_2                            4                             61
  CLUS_3                           22                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P11.21) MUTATED        8      5     14     16
  DEL PEAK 21(8P11.21) WILD-TYPE    127     45     63    119
D44V10, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            8                            127
  CLUS_2                            5                             45
  CLUS_3                           14                             63
  CLUS_4                           16                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8P11.21) MUTATED       11      3      8
  DEL PEAK 21(8P11.21) WILD-TYPE     68     75     55
D44V11, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                           11                             68
  CLUS_2                            3                             75
  CLUS_3                            8                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8P11.21) MUTATED        9      2      7      4
  DEL PEAK 21(8P11.21) WILD-TYPE     57     49     76     16
D44V12, multiclass
        clus
vv       DEL PEAK 21(8P11.21) MUTATED DEL PEAK 21(8P11.21) WILD-TYPE
  CLUS_1                            9                             57
  CLUS_2                            2                             49
  CLUS_3                            7                             76
  CLUS_4                            4                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 22(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED        3     11      2      3
  DEL PEAK 22(9P21.3) WILD-TYPE     32     50     27     18
D45V1, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           3                            32
  CLUS_2                          11                            50
  CLUS_3                           2                            27
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED        2     10      7
  DEL PEAK 22(9P21.3) WILD-TYPE     40     62     25
D45V2, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           2                            40
  CLUS_2                          10                            62
  CLUS_3                           7                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED        9     32     11      8
  DEL PEAK 22(9P21.3) WILD-TYPE     28    123    181     46
D45V3, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                          32                           123
  CLUS_3                          11                           181
  CLUS_4                           8                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       21      7     12
  DEL PEAK 22(9P21.3) WILD-TYPE     97     85     59
D45V4, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          21                            97
  CLUS_2                           7                            85
  CLUS_3                          12                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED       11     18      4     10
  DEL PEAK 22(9P21.3) WILD-TYPE     67    109     22     84
D45V5, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          11                            67
  CLUS_2                          18                           109
  CLUS_3                           4                            22
  CLUS_4                          10                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P21.3) MUTATED       10      9      5     10      8      1
  DEL PEAK 22(9P21.3) WILD-TYPE     49     39     51     58     60     25
D45V6, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          10                            49
  CLUS_2                           9                            39
  CLUS_3                           5                            51
  CLUS_4                          10                            58
  CLUS_5                           8                            60
  CLUS_6                           1                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9P21.3) MUTATED        7     19     12      4     15
  DEL PEAK 22(9P21.3) WILD-TYPE     26     94     59     86    101
D45V7, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           7                            26
  CLUS_2                          19                            94
  CLUS_3                          12                            59
  CLUS_4                           4                            86
  CLUS_5                          15                           101
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9P21.3) MUTATED       13     17      6     21      0
  DEL PEAK 22(9P21.3) WILD-TYPE     62     79     82    107     36
D45V8, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          13                            62
  CLUS_2                          17                            79
  CLUS_3                           6                            82
  CLUS_4                          21                           107
  CLUS_5                           0                            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       25      7     22
  DEL PEAK 22(9P21.3) WILD-TYPE    135     58    150
D45V9, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          25                           135
  CLUS_2                           7                            58
  CLUS_3                          22                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED       20      5     15     14
  DEL PEAK 22(9P21.3) WILD-TYPE    115     45     62    121
D45V10, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          20                           115
  CLUS_2                           5                            45
  CLUS_3                          15                            62
  CLUS_4                          14                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P21.3) MUTATED       17      6      9
  DEL PEAK 22(9P21.3) WILD-TYPE     62     72     54
D45V11, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          17                            62
  CLUS_2                           6                            72
  CLUS_3                           9                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P21.3) MUTATED       10      7     11      4
  DEL PEAK 22(9P21.3) WILD-TYPE     56     44     72     16
D45V12, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          10                            56
  CLUS_2                           7                            44
  CLUS_3                          11                            72
  CLUS_4                           4                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 23(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED        4     13      1      4
  DEL PEAK 23(10P15.3) WILD-TYPE     31     48     28     17
D46V1, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           13                             48
  CLUS_3                            1                             28
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED        3     11      8
  DEL PEAK 23(10P15.3) WILD-TYPE     39     61     24
D46V2, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           11                             61
  CLUS_3                            8                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       14     37     13     13
  DEL PEAK 23(10P15.3) WILD-TYPE     23    118    179     41
D46V3, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           14                             23
  CLUS_2                           37                            118
  CLUS_3                           13                            179
  CLUS_4                           13                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       34      8     12
  DEL PEAK 23(10P15.3) WILD-TYPE     84     84     59
D46V4, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           34                             84
  CLUS_2                            8                             84
  CLUS_3                           12                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       18     22      9     10
  DEL PEAK 23(10P15.3) WILD-TYPE     60    105     17     84
D46V5, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           18                             60
  CLUS_2                           22                            105
  CLUS_3                            9                             17
  CLUS_4                           10                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10P15.3) MUTATED       17     10      9     13      7      3
  DEL PEAK 23(10P15.3) WILD-TYPE     42     38     47     55     61     23
D46V6, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           17                             42
  CLUS_2                           10                             38
  CLUS_3                            9                             47
  CLUS_4                           13                             55
  CLUS_5                            7                             61
  CLUS_6                            3                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10P15.3) MUTATED        5     24     17      7     21
  DEL PEAK 23(10P15.3) WILD-TYPE     28     89     54     83     95
D46V7, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                           24                             89
  CLUS_3                           17                             54
  CLUS_4                            7                             83
  CLUS_5                           21                             95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10P15.3) MUTATED       25     17      6     23      3
  DEL PEAK 23(10P15.3) WILD-TYPE     50     79     82    105     33
D46V8, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           25                             50
  CLUS_2                           17                             79
  CLUS_3                            6                             82
  CLUS_4                           23                            105
  CLUS_5                            3                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       29     14     26
  DEL PEAK 23(10P15.3) WILD-TYPE    131     51    146
D46V9, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           29                            131
  CLUS_2                           14                             51
  CLUS_3                           26                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       22     13     16     18
  DEL PEAK 23(10P15.3) WILD-TYPE    113     37     61    117
D46V10, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           22                            113
  CLUS_2                           13                             37
  CLUS_3                           16                             61
  CLUS_4                           18                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10P15.3) MUTATED       21      5     15
  DEL PEAK 23(10P15.3) WILD-TYPE     58     73     48
D46V11, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           21                             58
  CLUS_2                            5                             73
  CLUS_3                           15                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10P15.3) MUTATED       17      2     18      4
  DEL PEAK 23(10P15.3) WILD-TYPE     49     49     65     16
D46V12, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           17                             49
  CLUS_2                            2                             49
  CLUS_3                           18                             65
  CLUS_4                            4                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 24(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED        3     19      1      4
  DEL PEAK 24(10Q21.1) WILD-TYPE     32     42     28     17
D47V1, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                           19                             42
  CLUS_3                            1                             28
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED        3     14     10
  DEL PEAK 24(10Q21.1) WILD-TYPE     39     58     22
D47V2, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           14                             58
  CLUS_3                           10                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       16     50     13     13
  DEL PEAK 24(10Q21.1) WILD-TYPE     21    105    179     41
D47V3, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           16                             21
  CLUS_2                           50                            105
  CLUS_3                           13                            179
  CLUS_4                           13                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       37     13     14
  DEL PEAK 24(10Q21.1) WILD-TYPE     81     79     57
D47V4, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           37                             81
  CLUS_2                           13                             79
  CLUS_3                           14                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       22     26      8     13
  DEL PEAK 24(10Q21.1) WILD-TYPE     56    101     18     81
D47V5, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           22                             56
  CLUS_2                           26                            101
  CLUS_3                            8                             18
  CLUS_4                           13                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q21.1) MUTATED       18     12     12     14      9      4
  DEL PEAK 24(10Q21.1) WILD-TYPE     41     36     44     54     59     22
D47V6, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           18                             41
  CLUS_2                           12                             36
  CLUS_3                           12                             44
  CLUS_4                           14                             54
  CLUS_5                            9                             59
  CLUS_6                            4                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q21.1) MUTATED        7     34     16      6     26
  DEL PEAK 24(10Q21.1) WILD-TYPE     26     79     55     84     90
D47V7, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            7                             26
  CLUS_2                           34                             79
  CLUS_3                           16                             55
  CLUS_4                            6                             84
  CLUS_5                           26                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q21.1) MUTATED       25     22      9     32      1
  DEL PEAK 24(10Q21.1) WILD-TYPE     50     74     79     96     35
D47V8, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           25                             50
  CLUS_2                           22                             74
  CLUS_3                            9                             79
  CLUS_4                           32                             96
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       36     14     33
  DEL PEAK 24(10Q21.1) WILD-TYPE    124     51    139
D47V9, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           36                            124
  CLUS_2                           14                             51
  CLUS_3                           33                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       27     13     19     24
  DEL PEAK 24(10Q21.1) WILD-TYPE    108     37     58    111
D47V10, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           27                            108
  CLUS_2                           13                             37
  CLUS_3                           19                             58
  CLUS_4                           24                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q21.1) MUTATED       25      7     16
  DEL PEAK 24(10Q21.1) WILD-TYPE     54     71     47
D47V11, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           25                             54
  CLUS_2                            7                             71
  CLUS_3                           16                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q21.1) MUTATED       20      5     19      4
  DEL PEAK 24(10Q21.1) WILD-TYPE     46     46     64     16
D47V12, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           20                             46
  CLUS_2                            5                             46
  CLUS_3                           19                             64
  CLUS_4                            4                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 25(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED        3     17      4      5
  DEL PEAK 25(10Q23.31) WILD-TYPE     32     44     25     16
D48V1, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                             3                              32
  CLUS_2                            17                              44
  CLUS_3                             4                              25
  CLUS_4                             5                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED        4     15     10
  DEL PEAK 25(10Q23.31) WILD-TYPE     38     57     22
D48V2, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                             4                              38
  CLUS_2                            15                              57
  CLUS_3                            10                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       19     51     20     15
  DEL PEAK 25(10Q23.31) WILD-TYPE     18    104    172     39
D48V3, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            19                              18
  CLUS_2                            51                             104
  CLUS_3                            20                             172
  CLUS_4                            15                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       43     15     16
  DEL PEAK 25(10Q23.31) WILD-TYPE     75     77     55
D48V4, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            43                              75
  CLUS_2                            15                              77
  CLUS_3                            16                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       21     28     10     17
  DEL PEAK 25(10Q23.31) WILD-TYPE     57     99     16     77
D48V5, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            21                              57
  CLUS_2                            28                              99
  CLUS_3                            10                              16
  CLUS_4                            17                              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q23.31) MUTATED       19     13     13     14     12      5
  DEL PEAK 25(10Q23.31) WILD-TYPE     40     35     43     54     56     21
D48V6, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            19                              40
  CLUS_2                            13                              35
  CLUS_3                            13                              43
  CLUS_4                            14                              54
  CLUS_5                            12                              56
  CLUS_6                             5                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q23.31) MUTATED        9     36     19      9     28
  DEL PEAK 25(10Q23.31) WILD-TYPE     24     77     52     81     88
D48V7, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                             9                              24
  CLUS_2                            36                              77
  CLUS_3                            19                              52
  CLUS_4                             9                              81
  CLUS_5                            28                              88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q23.31) MUTATED       26     28     12     34      1
  DEL PEAK 25(10Q23.31) WILD-TYPE     49     68     76     94     35
D48V8, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            26                              49
  CLUS_2                            28                              68
  CLUS_3                            12                              76
  CLUS_4                            34                              94
  CLUS_5                             1                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       39     18     37
  DEL PEAK 25(10Q23.31) WILD-TYPE    121     47    135
D48V9, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            39                             121
  CLUS_2                            18                              47
  CLUS_3                            37                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       31     17     21     25
  DEL PEAK 25(10Q23.31) WILD-TYPE    104     33     56    110
D48V10, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            31                             104
  CLUS_2                            17                              33
  CLUS_3                            21                              56
  CLUS_4                            25                             110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q23.31) MUTATED       27      7     21
  DEL PEAK 25(10Q23.31) WILD-TYPE     52     71     42
D48V11, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            27                              52
  CLUS_2                             7                              71
  CLUS_3                            21                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q23.31) MUTATED       26      4     22      3
  DEL PEAK 25(10Q23.31) WILD-TYPE     40     47     61     17
D48V12, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            26                              40
  CLUS_2                             4                              47
  CLUS_3                            22                              61
  CLUS_4                             3                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 26(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED        4     16      4      7
  DEL PEAK 26(10Q25.2) WILD-TYPE     31     45     25     14
D49V1, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           16                             45
  CLUS_3                            4                             25
  CLUS_4                            7                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED        3     18     10
  DEL PEAK 26(10Q25.2) WILD-TYPE     39     54     22
D49V2, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           18                             54
  CLUS_3                           10                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       19     57     16     13
  DEL PEAK 26(10Q25.2) WILD-TYPE     18     98    176     41
D49V3, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           19                             18
  CLUS_2                           57                             98
  CLUS_3                           16                            176
  CLUS_4                           13                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       45     12     14
  DEL PEAK 26(10Q25.2) WILD-TYPE     73     80     57
D49V4, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           45                             73
  CLUS_2                           12                             80
  CLUS_3                           14                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       24     31     11     13
  DEL PEAK 26(10Q25.2) WILD-TYPE     54     96     15     81
D49V5, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           24                             54
  CLUS_2                           31                             96
  CLUS_3                           11                             15
  CLUS_4                           13                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(10Q25.2) MUTATED       19     17     11     17     10      5
  DEL PEAK 26(10Q25.2) WILD-TYPE     40     31     45     51     58     21
D49V6, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           19                             40
  CLUS_2                           17                             31
  CLUS_3                           11                             45
  CLUS_4                           17                             51
  CLUS_5                           10                             58
  CLUS_6                            5                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10Q25.2) MUTATED        8     36     18      7     31
  DEL PEAK 26(10Q25.2) WILD-TYPE     25     77     53     83     85
D49V7, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           36                             77
  CLUS_3                           18                             53
  CLUS_4                            7                             83
  CLUS_5                           31                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(10Q25.2) MUTATED       27     26      7     39      1
  DEL PEAK 26(10Q25.2) WILD-TYPE     48     70     81     89     35
D49V8, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           27                             48
  CLUS_2                           26                             70
  CLUS_3                            7                             81
  CLUS_4                           39                             89
  CLUS_5                            1                             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       37     16     41
  DEL PEAK 26(10Q25.2) WILD-TYPE    123     49    131
D49V9, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           37                            123
  CLUS_2                           16                             49
  CLUS_3                           41                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       28     14     22     30
  DEL PEAK 26(10Q25.2) WILD-TYPE    107     36     55    105
D49V10, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           28                            107
  CLUS_2                           14                             36
  CLUS_3                           22                             55
  CLUS_4                           30                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(10Q25.2) MUTATED       29      4     18
  DEL PEAK 26(10Q25.2) WILD-TYPE     50     74     45
D49V11, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           29                             50
  CLUS_2                            4                             74
  CLUS_3                           18                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(10Q25.2) MUTATED       24      4     20      3
  DEL PEAK 26(10Q25.2) WILD-TYPE     42     47     63     17
D49V12, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                            4                             47
  CLUS_3                           20                             63
  CLUS_4                            3                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 27(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.2) MUTATED        2     13      0      2
  DEL PEAK 27(12P13.2) WILD-TYPE     33     48     29     19
D50V1, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                           13                             48
  CLUS_3                            0                             29
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED        0     10      7
  DEL PEAK 27(12P13.2) WILD-TYPE     42     62     25
D50V2, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            0                             42
  CLUS_2                           10                             62
  CLUS_3                            7                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.2) MUTATED        6     40      3      9
  DEL PEAK 27(12P13.2) WILD-TYPE     31    115    189     45
D50V3, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                           40                            115
  CLUS_3                            3                            189
  CLUS_4                            9                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED       27      9      6
  DEL PEAK 27(12P13.2) WILD-TYPE     91     83     65
D50V4, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           27                             91
  CLUS_2                            9                             83
  CLUS_3                            6                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.2) MUTATED        7     15      6     12
  DEL PEAK 27(12P13.2) WILD-TYPE     71    112     20     82
D50V5, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            7                             71
  CLUS_2                           15                            112
  CLUS_3                            6                             20
  CLUS_4                           12                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12P13.2) MUTATED        7      5      9      7      8      4
  DEL PEAK 27(12P13.2) WILD-TYPE     52     43     47     61     60     22
D50V6, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            7                             52
  CLUS_2                            5                             43
  CLUS_3                            9                             47
  CLUS_4                            7                             61
  CLUS_5                            8                             60
  CLUS_6                            4                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12P13.2) MUTATED        2     22      9      2     19
  DEL PEAK 27(12P13.2) WILD-TYPE     31     91     62     88     97
D50V7, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                           22                             91
  CLUS_3                            9                             62
  CLUS_4                            2                             88
  CLUS_5                           19                             97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12P13.2) MUTATED       16     15      2     21      0
  DEL PEAK 27(12P13.2) WILD-TYPE     59     81     86    107     36
D50V8, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           16                             59
  CLUS_2                           15                             81
  CLUS_3                            2                             86
  CLUS_4                           21                            107
  CLUS_5                            0                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED       20     10     21
  DEL PEAK 27(12P13.2) WILD-TYPE    140     55    151
D50V9, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           20                            140
  CLUS_2                           10                             55
  CLUS_3                           21                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.2) MUTATED       21      3     11     16
  DEL PEAK 27(12P13.2) WILD-TYPE    114     47     66    119
D50V10, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           21                            114
  CLUS_2                            3                             47
  CLUS_3                           11                             66
  CLUS_4                           16                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.2) MUTATED       15      3     11
  DEL PEAK 27(12P13.2) WILD-TYPE     64     75     52
D50V11, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           15                             64
  CLUS_2                            3                             75
  CLUS_3                           11                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.2) MUTATED       12      1     11      5
  DEL PEAK 27(12P13.2) WILD-TYPE     54     50     72     15
D50V12, multiclass
        clus
vv       DEL PEAK 27(12P13.2) MUTATED DEL PEAK 27(12P13.2) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                            1                             50
  CLUS_3                           11                             72
  CLUS_4                            5                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 28(13Q14.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q14.13) MUTATED        0      4      2      0
  DEL PEAK 28(13Q14.13) WILD-TYPE     35     57     27     21
D51V1, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             0                              35
  CLUS_2                             4                              57
  CLUS_3                             2                              27
  CLUS_4                             0                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        1      4      1
  DEL PEAK 28(13Q14.13) WILD-TYPE     41     68     31
D51V2, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             1                              41
  CLUS_2                             4                              68
  CLUS_3                             1                              31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q14.13) MUTATED        5      3      8      3
  DEL PEAK 28(13Q14.13) WILD-TYPE     32    152    184     51
D51V3, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             5                              32
  CLUS_2                             3                             152
  CLUS_3                             8                             184
  CLUS_4                             3                              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        4      3      6
  DEL PEAK 28(13Q14.13) WILD-TYPE    114     89     65
D51V4, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             4                             114
  CLUS_2                             3                              89
  CLUS_3                             6                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q14.13) MUTATED        6      3      0      4
  DEL PEAK 28(13Q14.13) WILD-TYPE     72    124     26     90
D51V5, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             6                              72
  CLUS_2                             3                             124
  CLUS_3                             0                              26
  CLUS_4                             4                              90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(13Q14.13) MUTATED        4      3      3      0      2      1
  DEL PEAK 28(13Q14.13) WILD-TYPE     55     45     53     68     66     25
D51V6, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             4                              55
  CLUS_2                             3                              45
  CLUS_3                             3                              53
  CLUS_4                             0                              68
  CLUS_5                             2                              66
  CLUS_6                             1                              25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q14.13) MUTATED        0      4      5      3      6
  DEL PEAK 28(13Q14.13) WILD-TYPE     33    109     66     87    110
D51V7, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             0                              33
  CLUS_2                             4                             109
  CLUS_3                             5                              66
  CLUS_4                             3                              87
  CLUS_5                             6                             110
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(13Q14.13) MUTATED        1      5      5      6      1
  DEL PEAK 28(13Q14.13) WILD-TYPE     74     91     83    122     35
D51V8, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             1                              74
  CLUS_2                             5                              91
  CLUS_3                             5                              83
  CLUS_4                             6                             122
  CLUS_5                             1                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        6      4      8
  DEL PEAK 28(13Q14.13) WILD-TYPE    154     61    164
D51V9, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             6                             154
  CLUS_2                             4                              61
  CLUS_3                             8                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q14.13) MUTATED        5      2      4      7
  DEL PEAK 28(13Q14.13) WILD-TYPE    130     48     73    128
D51V10, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             5                             130
  CLUS_2                             2                              48
  CLUS_3                             4                              73
  CLUS_4                             7                             128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(13Q14.13) MUTATED        3      2      4
  DEL PEAK 28(13Q14.13) WILD-TYPE     76     76     59
D51V11, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             3                              76
  CLUS_2                             2                              76
  CLUS_3                             4                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(13Q14.13) MUTATED        2      2      4      1
  DEL PEAK 28(13Q14.13) WILD-TYPE     64     49     79     19
D51V12, multiclass
        clus
vv       DEL PEAK 28(13Q14.13) MUTATED DEL PEAK 28(13Q14.13) WILD-TYPE
  CLUS_1                             2                              64
  CLUS_2                             2                              49
  CLUS_3                             4                              79
  CLUS_4                             1                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 29(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q31.1) MUTATED        6     36      3     10
  DEL PEAK 29(14Q31.1) WILD-TYPE     29     25     26     11
D52V1, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                           36                             25
  CLUS_3                            3                             26
  CLUS_4                           10                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED        6     29     20
  DEL PEAK 29(14Q31.1) WILD-TYPE     36     43     12
D52V2, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                           29                             43
  CLUS_3                           20                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q31.1) MUTATED       14    101     19     11
  DEL PEAK 29(14Q31.1) WILD-TYPE     23     54    173     43
D52V3, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           14                             23
  CLUS_2                          101                             54
  CLUS_3                           19                            173
  CLUS_4                           11                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED       54     17     17
  DEL PEAK 29(14Q31.1) WILD-TYPE     64     75     54
D52V4, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           54                             64
  CLUS_2                           17                             75
  CLUS_3                           17                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q31.1) MUTATED       28     53      9     15
  DEL PEAK 29(14Q31.1) WILD-TYPE     50     74     17     79
D52V5, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           28                             50
  CLUS_2                           53                             74
  CLUS_3                            9                             17
  CLUS_4                           15                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(14Q31.1) MUTATED       22     21     17     27     12      6
  DEL PEAK 29(14Q31.1) WILD-TYPE     37     27     39     41     56     20
D52V6, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           22                             37
  CLUS_2                           21                             27
  CLUS_3                           17                             39
  CLUS_4                           27                             41
  CLUS_5                           12                             56
  CLUS_6                            6                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(14Q31.1) MUTATED        9     50     19      8     53
  DEL PEAK 29(14Q31.1) WILD-TYPE     24     63     52     82     63
D52V7, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                            9                             24
  CLUS_2                           50                             63
  CLUS_3                           19                             52
  CLUS_4                            8                             82
  CLUS_5                           53                             63
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(14Q31.1) MUTATED       31     36     10     60      2
  DEL PEAK 29(14Q31.1) WILD-TYPE     44     60     78     68     34
D52V8, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           31                             44
  CLUS_2                           36                             60
  CLUS_3                           10                             78
  CLUS_4                           60                             68
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED       46     23     62
  DEL PEAK 29(14Q31.1) WILD-TYPE    114     42    110
D52V9, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           46                            114
  CLUS_2                           23                             42
  CLUS_3                           62                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q31.1) MUTATED       43      9     34     45
  DEL PEAK 29(14Q31.1) WILD-TYPE     92     41     43     90
D52V10, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           43                             92
  CLUS_2                            9                             41
  CLUS_3                           34                             43
  CLUS_4                           45                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q31.1) MUTATED       35     10     21
  DEL PEAK 29(14Q31.1) WILD-TYPE     44     68     42
D52V11, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           35                             44
  CLUS_2                           10                             68
  CLUS_3                           21                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q31.1) MUTATED       24      8     24     10
  DEL PEAK 29(14Q31.1) WILD-TYPE     42     43     59     10
D52V12, multiclass
        clus
vv       DEL PEAK 29(14Q31.1) MUTATED DEL PEAK 29(14Q31.1) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                            8                             43
  CLUS_3                           24                             59
  CLUS_4                           10                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 30(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q11.2) MUTATED        8     35      6     11
  DEL PEAK 30(15Q11.2) WILD-TYPE     27     26     23     10
D53V1, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           35                             26
  CLUS_3                            6                             23
  CLUS_4                           11                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED        8     33     19
  DEL PEAK 30(15Q11.2) WILD-TYPE     34     39     13
D53V2, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           33                             39
  CLUS_3                           19                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q11.2) MUTATED       24    103     29     15
  DEL PEAK 30(15Q11.2) WILD-TYPE     13     52    163     39
D53V3, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           24                             13
  CLUS_2                          103                             52
  CLUS_3                           29                            163
  CLUS_4                           15                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED       61     24     24
  DEL PEAK 30(15Q11.2) WILD-TYPE     57     68     47
D53V4, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           61                             57
  CLUS_2                           24                             68
  CLUS_3                           24                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q11.2) MUTATED       36     44     15     28
  DEL PEAK 30(15Q11.2) WILD-TYPE     42     83     11     66
D53V5, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           36                             42
  CLUS_2                           44                             83
  CLUS_3                           15                             11
  CLUS_4                           28                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(15Q11.2) MUTATED       31     22     19     24     20      7
  DEL PEAK 30(15Q11.2) WILD-TYPE     28     26     37     44     48     19
D53V6, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           31                             28
  CLUS_2                           22                             26
  CLUS_3                           19                             37
  CLUS_4                           24                             44
  CLUS_5                           20                             48
  CLUS_6                            7                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(15Q11.2) MUTATED       10     54     31     12     58
  DEL PEAK 30(15Q11.2) WILD-TYPE     23     59     40     78     58
D53V7, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           54                             59
  CLUS_3                           31                             40
  CLUS_4                           12                             78
  CLUS_5                           58                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(15Q11.2) MUTATED       43     42     11     65      4
  DEL PEAK 30(15Q11.2) WILD-TYPE     32     54     77     63     32
D53V8, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           43                             32
  CLUS_2                           42                             54
  CLUS_3                           11                             77
  CLUS_4                           65                             63
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED       62     26     67
  DEL PEAK 30(15Q11.2) WILD-TYPE     98     39    105
D53V9, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           62                             98
  CLUS_2                           26                             39
  CLUS_3                           67                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q11.2) MUTATED       49     21     33     52
  DEL PEAK 30(15Q11.2) WILD-TYPE     86     29     44     83
D53V10, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           49                             86
  CLUS_2                           21                             29
  CLUS_3                           33                             44
  CLUS_4                           52                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(15Q11.2) MUTATED       40     15     31
  DEL PEAK 30(15Q11.2) WILD-TYPE     39     63     32
D53V11, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           40                             39
  CLUS_2                           15                             63
  CLUS_3                           31                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(15Q11.2) MUTATED       33     10     35      8
  DEL PEAK 30(15Q11.2) WILD-TYPE     33     41     48     12
D53V12, multiclass
        clus
vv       DEL PEAK 30(15Q11.2) MUTATED DEL PEAK 30(15Q11.2) WILD-TYPE
  CLUS_1                           33                             33
  CLUS_2                           10                             41
  CLUS_3                           35                             48
  CLUS_4                            8                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 31(15Q15.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q15.2) MUTATED        8     33      6     11
  DEL PEAK 31(15Q15.2) WILD-TYPE     27     28     23     10
D54V1, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           33                             28
  CLUS_3                            6                             23
  CLUS_4                           11                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED        7     33     18
  DEL PEAK 31(15Q15.2) WILD-TYPE     35     39     14
D54V2, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           33                             39
  CLUS_3                           18                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q15.2) MUTATED       24    101     27     14
  DEL PEAK 31(15Q15.2) WILD-TYPE     13     54    165     40
D54V3, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           24                             13
  CLUS_2                          101                             54
  CLUS_3                           27                            165
  CLUS_4                           14                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED       60     23     23
  DEL PEAK 31(15Q15.2) WILD-TYPE     58     69     48
D54V4, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           60                             58
  CLUS_2                           23                             69
  CLUS_3                           23                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q15.2) MUTATED       37     43     12     23
  DEL PEAK 31(15Q15.2) WILD-TYPE     41     84     14     71
D54V5, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           37                             41
  CLUS_2                           43                             84
  CLUS_3                           12                             14
  CLUS_4                           23                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(15Q15.2) MUTATED       29     23     17     22     18      6
  DEL PEAK 31(15Q15.2) WILD-TYPE     30     25     39     46     50     20
D54V6, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           29                             30
  CLUS_2                           23                             25
  CLUS_3                           17                             39
  CLUS_4                           22                             46
  CLUS_5                           18                             50
  CLUS_6                            6                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q15.2) MUTATED       10     52     28     10     58
  DEL PEAK 31(15Q15.2) WILD-TYPE     23     61     43     80     58
D54V7, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           52                             61
  CLUS_3                           28                             43
  CLUS_4                           10                             80
  CLUS_5                           58                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(15Q15.2) MUTATED       39     41     10     65      3
  DEL PEAK 31(15Q15.2) WILD-TYPE     36     55     78     63     33
D54V8, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           39                             36
  CLUS_2                           41                             55
  CLUS_3                           10                             78
  CLUS_4                           65                             63
  CLUS_5                            3                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED       58     24     66
  DEL PEAK 31(15Q15.2) WILD-TYPE    102     41    106
D54V9, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           58                            102
  CLUS_2                           24                             41
  CLUS_3                           66                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q15.2) MUTATED       47     17     34     50
  DEL PEAK 31(15Q15.2) WILD-TYPE     88     33     43     85
D54V10, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           47                             88
  CLUS_2                           17                             33
  CLUS_3                           34                             43
  CLUS_4                           50                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(15Q15.2) MUTATED       37     14     29
  DEL PEAK 31(15Q15.2) WILD-TYPE     42     64     34
D54V11, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           37                             42
  CLUS_2                           14                             64
  CLUS_3                           29                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(15Q15.2) MUTATED       31      8     33      8
  DEL PEAK 31(15Q15.2) WILD-TYPE     35     43     50     12
D54V12, multiclass
        clus
vv       DEL PEAK 31(15Q15.2) MUTATED DEL PEAK 31(15Q15.2) WILD-TYPE
  CLUS_1                           31                             35
  CLUS_2                            8                             43
  CLUS_3                           33                             50
  CLUS_4                            8                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 32(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q21.1) MUTATED       11     31      6     11
  DEL PEAK 32(15Q21.1) WILD-TYPE     24     30     23     10
D55V1, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           11                             24
  CLUS_2                           31                             30
  CLUS_3                            6                             23
  CLUS_4                           11                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       10     31     18
  DEL PEAK 32(15Q21.1) WILD-TYPE     32     41     14
D55V2, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           31                             41
  CLUS_3                           18                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q21.1) MUTATED       23     97     29     14
  DEL PEAK 32(15Q21.1) WILD-TYPE     14     58    163     40
D55V3, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           23                             14
  CLUS_2                           97                             58
  CLUS_3                           29                            163
  CLUS_4                           14                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       57     22     23
  DEL PEAK 32(15Q21.1) WILD-TYPE     61     70     48
D55V4, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           57                             61
  CLUS_2                           22                             70
  CLUS_3                           23                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q21.1) MUTATED       37     43     13     24
  DEL PEAK 32(15Q21.1) WILD-TYPE     41     84     13     70
D55V5, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           37                             41
  CLUS_2                           43                             84
  CLUS_3                           13                             13
  CLUS_4                           24                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q21.1) MUTATED       29     22     17     24     19      6
  DEL PEAK 32(15Q21.1) WILD-TYPE     30     26     39     44     49     20
D55V6, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           29                             30
  CLUS_2                           22                             26
  CLUS_3                           17                             39
  CLUS_4                           24                             44
  CLUS_5                           19                             49
  CLUS_6                            6                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q21.1) MUTATED       10     50     28     10     59
  DEL PEAK 32(15Q21.1) WILD-TYPE     23     63     43     80     57
D55V7, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           50                             63
  CLUS_3                           28                             43
  CLUS_4                           10                             80
  CLUS_5                           59                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q21.1) MUTATED       38     40     10     63      6
  DEL PEAK 32(15Q21.1) WILD-TYPE     37     56     78     65     30
D55V8, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           38                             37
  CLUS_2                           40                             56
  CLUS_3                           10                             78
  CLUS_4                           63                             65
  CLUS_5                            6                             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       57     24     66
  DEL PEAK 32(15Q21.1) WILD-TYPE    103     41    106
D55V9, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           57                            103
  CLUS_2                           24                             41
  CLUS_3                           66                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q21.1) MUTATED       46     17     32     52
  DEL PEAK 32(15Q21.1) WILD-TYPE     89     33     45     83
D55V10, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           46                             89
  CLUS_2                           17                             33
  CLUS_3                           32                             45
  CLUS_4                           52                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q21.1) MUTATED       36     14     29
  DEL PEAK 32(15Q21.1) WILD-TYPE     43     64     34
D55V11, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           36                             43
  CLUS_2                           14                             64
  CLUS_3                           29                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q21.1) MUTATED       30      8     33      8
  DEL PEAK 32(15Q21.1) WILD-TYPE     36     43     50     12
D55V12, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           30                             36
  CLUS_2                            8                             43
  CLUS_3                           33                             50
  CLUS_4                            8                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 33(15Q22.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q22.33) MUTATED        8     32      3     10
  DEL PEAK 33(15Q22.33) WILD-TYPE     27     29     26     11
D56V1, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                             8                              27
  CLUS_2                            32                              29
  CLUS_3                             3                              26
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED        6     29     18
  DEL PEAK 33(15Q22.33) WILD-TYPE     36     43     14
D56V2, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                            29                              43
  CLUS_3                            18                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q22.33) MUTATED       23     97     23     15
  DEL PEAK 33(15Q22.33) WILD-TYPE     14     58    169     39
D56V3, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            23                              14
  CLUS_2                            97                              58
  CLUS_3                            23                             169
  CLUS_4                            15                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED       60     19     24
  DEL PEAK 33(15Q22.33) WILD-TYPE     58     73     47
D56V4, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            60                              58
  CLUS_2                            19                              73
  CLUS_3                            24                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q22.33) MUTATED       34     41     12     24
  DEL PEAK 33(15Q22.33) WILD-TYPE     44     86     14     70
D56V5, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            34                              44
  CLUS_2                            41                              86
  CLUS_3                            12                              14
  CLUS_4                            24                              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q22.33) MUTATED       29     20     17     21     18      6
  DEL PEAK 33(15Q22.33) WILD-TYPE     30     28     39     47     50     20
D56V6, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            29                              30
  CLUS_2                            20                              28
  CLUS_3                            17                              39
  CLUS_4                            21                              47
  CLUS_5                            18                              50
  CLUS_6                             6                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q22.33) MUTATED       10     52     28      8     54
  DEL PEAK 33(15Q22.33) WILD-TYPE     23     61     43     82     62
D56V7, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            10                              23
  CLUS_2                            52                              61
  CLUS_3                            28                              43
  CLUS_4                             8                              82
  CLUS_5                            54                              62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q22.33) MUTATED       40     40     10     60      2
  DEL PEAK 33(15Q22.33) WILD-TYPE     35     56     78     68     34
D56V8, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            40                              35
  CLUS_2                            40                              56
  CLUS_3                            10                              78
  CLUS_4                            60                              68
  CLUS_5                             2                              34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED       54     26     61
  DEL PEAK 33(15Q22.33) WILD-TYPE    106     39    111
D56V9, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            54                             106
  CLUS_2                            26                              39
  CLUS_3                            61                             111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q22.33) MUTATED       45     19     31     46
  DEL PEAK 33(15Q22.33) WILD-TYPE     90     31     46     89
D56V10, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            45                              90
  CLUS_2                            19                              31
  CLUS_3                            31                              46
  CLUS_4                            46                              89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q22.33) MUTATED       36     13     30
  DEL PEAK 33(15Q22.33) WILD-TYPE     43     65     33
D56V11, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            36                              43
  CLUS_2                            13                              65
  CLUS_3                            30                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q22.33) MUTATED       28      6     35     10
  DEL PEAK 33(15Q22.33) WILD-TYPE     38     45     48     10
D56V12, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            28                              38
  CLUS_2                             6                              45
  CLUS_3                            35                              48
  CLUS_4                            10                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 34(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        3     11      1      3
  DEL PEAK 34(16P13.3) WILD-TYPE     32     50     28     18
D57V1, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                           11                             50
  CLUS_3                            1                             28
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        3      7      8
  DEL PEAK 34(16P13.3) WILD-TYPE     39     65     24
D57V2, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                            7                             65
  CLUS_3                            8                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        8     26     15      6
  DEL PEAK 34(16P13.3) WILD-TYPE     29    129    177     48
D57V3, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                           26                            129
  CLUS_3                           15                            177
  CLUS_4                            6                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       22      7      8
  DEL PEAK 34(16P13.3) WILD-TYPE     96     85     63
D57V4, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           22                             96
  CLUS_2                            7                             85
  CLUS_3                            8                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED       10     11      5     10
  DEL PEAK 34(16P13.3) WILD-TYPE     68    116     21     84
D57V5, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           10                             68
  CLUS_2                           11                            116
  CLUS_3                            5                             21
  CLUS_4                           10                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16P13.3) MUTATED        9      4      7      4      8      4
  DEL PEAK 34(16P13.3) WILD-TYPE     50     44     49     64     60     22
D57V6, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                            4                             44
  CLUS_3                            7                             49
  CLUS_4                            4                             64
  CLUS_5                            8                             60
  CLUS_6                            4                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED        2     18      9      6     16
  DEL PEAK 34(16P13.3) WILD-TYPE     31     95     62     84    100
D57V7, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                           18                             95
  CLUS_3                            9                             62
  CLUS_4                            6                             84
  CLUS_5                           16                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED       10     15      5     17      4
  DEL PEAK 34(16P13.3) WILD-TYPE     65     81     83    111     32
D57V8, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           10                             65
  CLUS_2                           15                             81
  CLUS_3                            5                             83
  CLUS_4                           17                            111
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       18      6     21
  DEL PEAK 34(16P13.3) WILD-TYPE    142     59    151
D57V9, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           18                            142
  CLUS_2                            6                             59
  CLUS_3                           21                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED       15      6      6     18
  DEL PEAK 34(16P13.3) WILD-TYPE    120     44     71    117
D57V10, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                            6                             44
  CLUS_3                            6                             71
  CLUS_4                           18                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       10      4      9
  DEL PEAK 34(16P13.3) WILD-TYPE     69     74     54
D57V11, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                            4                             74
  CLUS_3                            9                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        9      4      9      1
  DEL PEAK 34(16P13.3) WILD-TYPE     57     47     74     19
D57V12, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            9                             57
  CLUS_2                            4                             47
  CLUS_3                            9                             74
  CLUS_4                            1                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 35(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED        9      7      4      2
  DEL PEAK 35(16Q23.1) WILD-TYPE     26     54     25     19
D58V1, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                            7                             54
  CLUS_3                            4                             25
  CLUS_4                            2                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       13      6      3
  DEL PEAK 35(16Q23.1) WILD-TYPE     29     66     29
D58V2, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                            6                             66
  CLUS_3                            3                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED        8     16     30      5
  DEL PEAK 35(16Q23.1) WILD-TYPE     29    139    162     49
D58V3, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                           16                            139
  CLUS_3                           30                            162
  CLUS_4                            5                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       15     13      8
  DEL PEAK 35(16Q23.1) WILD-TYPE    103     79     63
D58V4, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           15                            103
  CLUS_2                           13                             79
  CLUS_3                            8                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED       13     10      5     13
  DEL PEAK 35(16Q23.1) WILD-TYPE     65    117     21     81
D58V5, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           13                             65
  CLUS_2                           10                            117
  CLUS_3                            5                             21
  CLUS_4                           13                             81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q23.1) MUTATED        9      4      9      7      7      5
  DEL PEAK 35(16Q23.1) WILD-TYPE     50     44     47     61     61     21
D58V6, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            9                             50
  CLUS_2                            4                             44
  CLUS_3                            9                             47
  CLUS_4                            7                             61
  CLUS_5                            7                             61
  CLUS_6                            5                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q23.1) MUTATED        3     10      8     18     16
  DEL PEAK 35(16Q23.1) WILD-TYPE     30    103     63     72    100
D58V7, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                           10                            103
  CLUS_3                            8                             63
  CLUS_4                           18                             72
  CLUS_5                           16                            100
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q23.1) MUTATED        8      8     15     13     11
  DEL PEAK 35(16Q23.1) WILD-TYPE     67     88     73    115     25
D58V8, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            8                             67
  CLUS_2                            8                             88
  CLUS_3                           15                             73
  CLUS_4                           13                            115
  CLUS_5                           11                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       21      5     22
  DEL PEAK 35(16Q23.1) WILD-TYPE    139     60    150
D58V9, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           21                            139
  CLUS_2                            5                             60
  CLUS_3                           22                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED       18      3      8     19
  DEL PEAK 35(16Q23.1) WILD-TYPE    117     47     69    116
D58V10, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           18                            117
  CLUS_2                            3                             47
  CLUS_3                            8                             69
  CLUS_4                           19                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q23.1) MUTATED       10      8      6
  DEL PEAK 35(16Q23.1) WILD-TYPE     69     70     57
D58V11, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           10                             69
  CLUS_2                            8                             70
  CLUS_3                            6                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q23.1) MUTATED        7      7      8      2
  DEL PEAK 35(16Q23.1) WILD-TYPE     59     44     75     18
D58V12, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            7                             59
  CLUS_2                            7                             44
  CLUS_3                            8                             75
  CLUS_4                            2                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 36(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P12) MUTATED       10     49      8     15
  DEL PEAK 36(17P12) WILD-TYPE     25     12     21      6
D59V1, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         10                           25
  CLUS_2                         49                           12
  CLUS_3                          8                           21
  CLUS_4                         15                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED        9     47     26
  DEL PEAK 36(17P12) WILD-TYPE     33     25      6
D59V2, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                          9                           33
  CLUS_2                         47                           25
  CLUS_3                         26                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P12) MUTATED       26    137     43     40
  DEL PEAK 36(17P12) WILD-TYPE     11     18    149     14
D59V3, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         26                           11
  CLUS_2                        137                           18
  CLUS_3                         43                          149
  CLUS_4                         40                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED       95     31     34
  DEL PEAK 36(17P12) WILD-TYPE     23     61     37
D59V4, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         95                           23
  CLUS_2                         31                           61
  CLUS_3                         34                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P12) MUTATED       49     74     16     38
  DEL PEAK 36(17P12) WILD-TYPE     29     53     10     56
D59V5, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         49                           29
  CLUS_2                         74                           53
  CLUS_3                         16                           10
  CLUS_4                         38                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(17P12) MUTATED       41     29     32     41     25      9
  DEL PEAK 36(17P12) WILD-TYPE     18     19     24     27     43     17
D59V6, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         41                           18
  CLUS_2                         29                           19
  CLUS_3                         32                           24
  CLUS_4                         41                           27
  CLUS_5                         25                           43
  CLUS_6                          9                           17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17P12) MUTATED       21     91     37     14     73
  DEL PEAK 36(17P12) WILD-TYPE     12     22     34     76     43
D59V7, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         21                           12
  CLUS_2                         91                           22
  CLUS_3                         37                           34
  CLUS_4                         14                           76
  CLUS_5                         73                           43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(17P12) MUTATED       53     70     18     91      4
  DEL PEAK 36(17P12) WILD-TYPE     22     26     70     37     32
D59V8, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         53                           22
  CLUS_2                         70                           26
  CLUS_3                         18                           70
  CLUS_4                         91                           37
  CLUS_5                          4                           32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED       94     34     96
  DEL PEAK 36(17P12) WILD-TYPE     66     31     76
D59V9, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         94                           66
  CLUS_2                         34                           31
  CLUS_3                         96                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P12) MUTATED       74     24     55     71
  DEL PEAK 36(17P12) WILD-TYPE     61     26     22     64
D59V10, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         74                           61
  CLUS_2                         24                           26
  CLUS_3                         55                           22
  CLUS_4                         71                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(17P12) MUTATED       65     22     37
  DEL PEAK 36(17P12) WILD-TYPE     14     56     26
D59V11, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         65                           14
  CLUS_2                         22                           56
  CLUS_3                         37                           26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(17P12) MUTATED       47     18     41     18
  DEL PEAK 36(17P12) WILD-TYPE     19     33     42      2
D59V12, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         47                           19
  CLUS_2                         18                           33
  CLUS_3                         41                           42
  CLUS_4                         18                            2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 37(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17Q24.3) MUTATED        4     14      1      3
  DEL PEAK 37(17Q24.3) WILD-TYPE     31     47     28     18
D60V1, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           14                             47
  CLUS_3                            1                             28
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED        4     13      5
  DEL PEAK 37(17Q24.3) WILD-TYPE     38     59     27
D60V2, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           13                             59
  CLUS_3                            5                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17Q24.3) MUTATED        9     30     18      8
  DEL PEAK 37(17Q24.3) WILD-TYPE     28    125    174     46
D60V3, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            9                             28
  CLUS_2                           30                            125
  CLUS_3                           18                            174
  CLUS_4                            8                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED       19      6     16
  DEL PEAK 37(17Q24.3) WILD-TYPE     99     86     55
D60V4, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           19                             99
  CLUS_2                            6                             86
  CLUS_3                           16                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17Q24.3) MUTATED       11     16      4     10
  DEL PEAK 37(17Q24.3) WILD-TYPE     67    111     22     84
D60V5, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           11                             67
  CLUS_2                           16                            111
  CLUS_3                            4                             22
  CLUS_4                           10                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(17Q24.3) MUTATED       10      2      7     11      7      4
  DEL PEAK 37(17Q24.3) WILD-TYPE     49     46     49     57     61     22
D60V6, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           10                             49
  CLUS_2                            2                             46
  CLUS_3                            7                             49
  CLUS_4                           11                             57
  CLUS_5                            7                             61
  CLUS_6                            4                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(17Q24.3) MUTATED        5     21     12      2     22
  DEL PEAK 37(17Q24.3) WILD-TYPE     28     92     59     88     94
D60V7, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                           21                             92
  CLUS_3                           12                             59
  CLUS_4                            2                             88
  CLUS_5                           22                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(17Q24.3) MUTATED       11     20      7     22      2
  DEL PEAK 37(17Q24.3) WILD-TYPE     64     76     81    106     34
D60V8, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           11                             64
  CLUS_2                           20                             76
  CLUS_3                            7                             81
  CLUS_4                           22                            106
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED       23     12     25
  DEL PEAK 37(17Q24.3) WILD-TYPE    137     53    147
D60V9, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           23                            137
  CLUS_2                           12                             53
  CLUS_3                           25                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17Q24.3) MUTATED       20      7     13     20
  DEL PEAK 37(17Q24.3) WILD-TYPE    115     43     64    115
D60V10, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           20                            115
  CLUS_2                            7                             43
  CLUS_3                           13                             64
  CLUS_4                           20                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17Q24.3) MUTATED       18      5     11
  DEL PEAK 37(17Q24.3) WILD-TYPE     61     73     52
D60V11, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           18                             61
  CLUS_2                            5                             73
  CLUS_3                           11                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17Q24.3) MUTATED       11      4     13      6
  DEL PEAK 37(17Q24.3) WILD-TYPE     55     47     70     14
D60V12, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           11                             55
  CLUS_2                            4                             47
  CLUS_3                           13                             70
  CLUS_4                            6                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 38(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18P11.31) MUTATED        6     50      7     15
  DEL PEAK 38(18P11.31) WILD-TYPE     29     11     22      6
D61V1, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             6                              29
  CLUS_2                            50                              11
  CLUS_3                             7                              22
  CLUS_4                            15                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED        5     47     26
  DEL PEAK 38(18P11.31) WILD-TYPE     37     25      6
D61V2, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             5                              37
  CLUS_2                            47                              25
  CLUS_3                            26                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18P11.31) MUTATED       32    136     34     35
  DEL PEAK 38(18P11.31) WILD-TYPE      5     19    158     19
D61V3, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            32                               5
  CLUS_2                           136                              19
  CLUS_3                            34                             158
  CLUS_4                            35                              19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED       98     23     35
  DEL PEAK 38(18P11.31) WILD-TYPE     20     69     36
D61V4, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            98                              20
  CLUS_2                            23                              69
  CLUS_3                            35                              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18P11.31) MUTATED       43     78     16     33
  DEL PEAK 38(18P11.31) WILD-TYPE     35     49     10     61
D61V5, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            43                              35
  CLUS_2                            78                              49
  CLUS_3                            16                              10
  CLUS_4                            33                              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(18P11.31) MUTATED       33     29     36     38     25      9
  DEL PEAK 38(18P11.31) WILD-TYPE     26     19     20     30     43     17
D61V6, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            33                              26
  CLUS_2                            29                              19
  CLUS_3                            36                              20
  CLUS_4                            38                              30
  CLUS_5                            25                              43
  CLUS_6                             9                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18P11.31) MUTATED       18     98     35      8     70
  DEL PEAK 38(18P11.31) WILD-TYPE     15     15     36     82     46
D61V7, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            18                              15
  CLUS_2                            98                              15
  CLUS_3                            35                              36
  CLUS_4                             8                              82
  CLUS_5                            70                              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(18P11.31) MUTATED       57     69     12     90      1
  DEL PEAK 38(18P11.31) WILD-TYPE     18     27     76     38     35
D61V8, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            57                              18
  CLUS_2                            69                              27
  CLUS_3                            12                              76
  CLUS_4                            90                              38
  CLUS_5                             1                              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED       88     33     91
  DEL PEAK 38(18P11.31) WILD-TYPE     72     32     81
D61V9, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            88                              72
  CLUS_2                            33                              32
  CLUS_3                            91                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18P11.31) MUTATED       68     23     54     67
  DEL PEAK 38(18P11.31) WILD-TYPE     67     27     23     68
D61V10, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            68                              67
  CLUS_2                            23                              27
  CLUS_3                            54                              23
  CLUS_4                            67                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(18P11.31) MUTATED       63     15     38
  DEL PEAK 38(18P11.31) WILD-TYPE     16     63     25
D61V11, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            63                              16
  CLUS_2                            15                              63
  CLUS_3                            38                              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(18P11.31) MUTATED       44     16     39     17
  DEL PEAK 38(18P11.31) WILD-TYPE     22     35     44      3
D61V12, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            44                              22
  CLUS_2                            16                              35
  CLUS_3                            39                              44
  CLUS_4                            17                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 39(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q12.2) MUTATED        8     53      9     16
  DEL PEAK 39(18Q12.2) WILD-TYPE     27      8     20      5
D62V1, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           53                              8
  CLUS_3                            9                             20
  CLUS_4                           16                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED        7     51     28
  DEL PEAK 39(18Q12.2) WILD-TYPE     35     21      4
D62V2, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           51                             21
  CLUS_3                           28                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q12.2) MUTATED       31    143     44     45
  DEL PEAK 39(18Q12.2) WILD-TYPE      6     12    148      9
D62V3, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           31                              6
  CLUS_2                          143                             12
  CLUS_3                           44                            148
  CLUS_4                           45                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED      106     30     36
  DEL PEAK 39(18Q12.2) WILD-TYPE     12     62     35
D62V4, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                          106                             12
  CLUS_2                           30                             62
  CLUS_3                           36                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q12.2) MUTATED       52     81     15     39
  DEL PEAK 39(18Q12.2) WILD-TYPE     26     46     11     55
D62V5, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           52                             26
  CLUS_2                           81                             46
  CLUS_3                           15                             11
  CLUS_4                           39                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(18Q12.2) MUTATED       40     33     37     40     27     10
  DEL PEAK 39(18Q12.2) WILD-TYPE     19     15     19     28     41     16
D62V6, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           40                             19
  CLUS_2                           33                             15
  CLUS_3                           37                             19
  CLUS_4                           40                             28
  CLUS_5                           27                             41
  CLUS_6                           10                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(18Q12.2) MUTATED       20     99     43     14     79
  DEL PEAK 39(18Q12.2) WILD-TYPE     13     14     28     76     37
D62V7, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           20                             13
  CLUS_2                           99                             14
  CLUS_3                           43                             28
  CLUS_4                           14                             76
  CLUS_5                           79                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(18Q12.2) MUTATED       62     74     19     98      2
  DEL PEAK 39(18Q12.2) WILD-TYPE     13     22     69     30     34
D62V8, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           62                             13
  CLUS_2                           74                             22
  CLUS_3                           19                             69
  CLUS_4                           98                             30
  CLUS_5                            2                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED       97     38    103
  DEL PEAK 39(18Q12.2) WILD-TYPE     63     27     69
D62V9, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           97                             63
  CLUS_2                           38                             27
  CLUS_3                          103                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q12.2) MUTATED       78     28     58     74
  DEL PEAK 39(18Q12.2) WILD-TYPE     57     22     19     61
D62V10, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           78                             57
  CLUS_2                           28                             22
  CLUS_3                           58                             19
  CLUS_4                           74                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(18Q12.2) MUTATED       69     21     42
  DEL PEAK 39(18Q12.2) WILD-TYPE     10     57     21
D62V11, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           69                             10
  CLUS_2                           21                             57
  CLUS_3                           42                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(18Q12.2) MUTATED       50     18     46     18
  DEL PEAK 39(18Q12.2) WILD-TYPE     16     33     37      2
D62V12, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           50                             16
  CLUS_2                           18                             33
  CLUS_3                           46                             37
  CLUS_4                           18                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 40(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q21.2) MUTATED        8     53     10     16
  DEL PEAK 40(18Q21.2) WILD-TYPE     27      8     19      5
D63V1, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           53                              8
  CLUS_3                           10                             19
  CLUS_4                           16                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED        7     52     28
  DEL PEAK 40(18Q21.2) WILD-TYPE     35     20      4
D63V2, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           52                             20
  CLUS_3                           28                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q21.2) MUTATED       32    145     53     47
  DEL PEAK 40(18Q21.2) WILD-TYPE      5     10    139      7
D63V3, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           32                              5
  CLUS_2                          145                             10
  CLUS_3                           53                            139
  CLUS_4                           47                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED      107     40     38
  DEL PEAK 40(18Q21.2) WILD-TYPE     11     52     33
D63V4, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          107                             11
  CLUS_2                           40                             52
  CLUS_3                           38                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q21.2) MUTATED       54     88     16     42
  DEL PEAK 40(18Q21.2) WILD-TYPE     24     39     10     52
D63V5, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           54                             24
  CLUS_2                           88                             39
  CLUS_3                           16                             10
  CLUS_4                           42                             52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18Q21.2) MUTATED       43     34     41     42     29     11
  DEL PEAK 40(18Q21.2) WILD-TYPE     16     14     15     26     39     15
D63V6, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           43                             16
  CLUS_2                           34                             14
  CLUS_3                           41                             15
  CLUS_4                           42                             26
  CLUS_5                           29                             39
  CLUS_6                           11                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18Q21.2) MUTATED       20    101     46     22     79
  DEL PEAK 40(18Q21.2) WILD-TYPE     13     12     25     68     37
D63V7, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           20                             13
  CLUS_2                          101                             12
  CLUS_3                           46                             25
  CLUS_4                           22                             68
  CLUS_5                           79                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18Q21.2) MUTATED       64     76     27     98      3
  DEL PEAK 40(18Q21.2) WILD-TYPE     11     20     61     30     33
D63V8, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           64                             11
  CLUS_2                           76                             20
  CLUS_3                           27                             61
  CLUS_4                           98                             30
  CLUS_5                            3                             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED      107     39    105
  DEL PEAK 40(18Q21.2) WILD-TYPE     53     26     67
D63V9, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          107                             53
  CLUS_2                           39                             26
  CLUS_3                          105                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q21.2) MUTATED       85     30     59     77
  DEL PEAK 40(18Q21.2) WILD-TYPE     50     20     18     58
D63V10, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           85                             50
  CLUS_2                           30                             20
  CLUS_3                           59                             18
  CLUS_4                           77                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18Q21.2) MUTATED       72     27     44
  DEL PEAK 40(18Q21.2) WILD-TYPE      7     51     19
D63V11, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           72                              7
  CLUS_2                           27                             51
  CLUS_3                           44                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18Q21.2) MUTATED       52     24     49     18
  DEL PEAK 40(18Q21.2) WILD-TYPE     14     27     34      2
D63V12, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           52                             14
  CLUS_2                           24                             27
  CLUS_3                           49                             34
  CLUS_4                           18                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 41(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.1) MUTATED        8     53     11     16
  DEL PEAK 41(18Q22.1) WILD-TYPE     27      8     18      5
D64V1, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                           53                              8
  CLUS_3                           11                             18
  CLUS_4                           16                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.1) MUTATED        8     52     28
  DEL PEAK 41(18Q22.1) WILD-TYPE     34     20      4
D64V2, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           52                             20
  CLUS_3                           28                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.1) MUTATED       33    146     52     46
  DEL PEAK 41(18Q22.1) WILD-TYPE      4      9    140      8
D64V3, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           33                              4
  CLUS_2                          146                              9
  CLUS_3                           52                            140
  CLUS_4                           46                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.1) MUTATED      107     40     37
  DEL PEAK 41(18Q22.1) WILD-TYPE     11     52     34
D64V4, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                          107                             11
  CLUS_2                           40                             52
  CLUS_3                           37                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.1) MUTATED       54     87     17     43
  DEL PEAK 41(18Q22.1) WILD-TYPE     24     40      9     51
D64V5, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           54                             24
  CLUS_2                           87                             40
  CLUS_3                           17                              9
  CLUS_4                           43                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q22.1) MUTATED       42     35     41     43     29     11
  DEL PEAK 41(18Q22.1) WILD-TYPE     17     13     15     25     39     15
D64V6, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           42                             17
  CLUS_2                           35                             13
  CLUS_3                           41                             15
  CLUS_4                           43                             25
  CLUS_5                           29                             39
  CLUS_6                           11                             15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(18Q22.1) MUTATED       20    100     46     23     79
  DEL PEAK 41(18Q22.1) WILD-TYPE     13     13     25     67     37
D64V7, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           20                             13
  CLUS_2                          100                             13
  CLUS_3                           46                             25
  CLUS_4                           23                             67
  CLUS_5                           79                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(18Q22.1) MUTATED       64     76     26     98      4
  DEL PEAK 41(18Q22.1) WILD-TYPE     11     20     62     30     32
D64V8, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           64                             11
  CLUS_2                           76                             20
  CLUS_3                           26                             62
  CLUS_4                           98                             30
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.1) MUTATED      106     39    106
  DEL PEAK 41(18Q22.1) WILD-TYPE     54     26     66
D64V9, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                          106                             54
  CLUS_2                           39                             26
  CLUS_3                          106                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.1) MUTATED       85     30     58     78
  DEL PEAK 41(18Q22.1) WILD-TYPE     50     20     19     57
D64V10, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           85                             50
  CLUS_2                           30                             20
  CLUS_3                           58                             19
  CLUS_4                           78                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q22.1) MUTATED       72     26     44
  DEL PEAK 41(18Q22.1) WILD-TYPE      7     52     19
D64V11, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           72                              7
  CLUS_2                           26                             52
  CLUS_3                           44                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q22.1) MUTATED       51     24     49     18
  DEL PEAK 41(18Q22.1) WILD-TYPE     15     27     34      2
D64V12, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           51                             15
  CLUS_2                           24                             27
  CLUS_3                           49                             34
  CLUS_4                           18                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 42(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19P13.3) MUTATED        4     17      3      3
  DEL PEAK 42(19P13.3) WILD-TYPE     31     44     26     18
D65V1, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                           17                             44
  CLUS_3                            3                             26
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19P13.3) MUTATED        4     14      9
  DEL PEAK 42(19P13.3) WILD-TYPE     38     58     23
D65V2, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           14                             58
  CLUS_3                            9                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19P13.3) MUTATED        6     34     13     10
  DEL PEAK 42(19P13.3) WILD-TYPE     31    121    179     44
D65V3, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                           34                            121
  CLUS_3                           13                            179
  CLUS_4                           10                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19P13.3) MUTATED       17      6     11
  DEL PEAK 42(19P13.3) WILD-TYPE    101     86     60
D65V4, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           17                            101
  CLUS_2                            6                             86
  CLUS_3                           11                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19P13.3) MUTATED       10     14      3     12
  DEL PEAK 42(19P13.3) WILD-TYPE     68    113     23     82
D65V5, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           10                             68
  CLUS_2                           14                            113
  CLUS_3                            3                             23
  CLUS_4                           12                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(19P13.3) MUTATED       12      3      6      7     10      1
  DEL PEAK 42(19P13.3) WILD-TYPE     47     45     50     61     58     25
D65V6, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           12                             47
  CLUS_2                            3                             45
  CLUS_3                            6                             50
  CLUS_4                            7                             61
  CLUS_5                           10                             58
  CLUS_6                            1                             25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(19P13.3) MUTATED        3     18     13      3     22
  DEL PEAK 42(19P13.3) WILD-TYPE     30     95     58     87     94
D65V7, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                           18                             95
  CLUS_3                           13                             58
  CLUS_4                            3                             87
  CLUS_5                           22                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(19P13.3) MUTATED        9     17      5     28      0
  DEL PEAK 42(19P13.3) WILD-TYPE     66     79     83    100     36
D65V8, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            9                             66
  CLUS_2                           17                             79
  CLUS_3                            5                             83
  CLUS_4                           28                            100
  CLUS_5                            0                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19P13.3) MUTATED       22      7     27
  DEL PEAK 42(19P13.3) WILD-TYPE    138     58    145
D65V9, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           22                            138
  CLUS_2                            7                             58
  CLUS_3                           27                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19P13.3) MUTATED       18      1     17     20
  DEL PEAK 42(19P13.3) WILD-TYPE    117     49     60    115
D65V10, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           18                            117
  CLUS_2                            1                             49
  CLUS_3                           17                             60
  CLUS_4                           20                            115
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(19P13.3) MUTATED       16      5      6
  DEL PEAK 42(19P13.3) WILD-TYPE     63     73     57
D65V11, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           16                             63
  CLUS_2                            5                             73
  CLUS_3                            6                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(19P13.3) MUTATED       12      5      8      2
  DEL PEAK 42(19P13.3) WILD-TYPE     54     46     75     18
D65V12, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           12                             54
  CLUS_2                            5                             46
  CLUS_3                            8                             75
  CLUS_4                            2                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 43(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20P12.1) MUTATED        6     26      7      3
  DEL PEAK 43(20P12.1) WILD-TYPE     29     35     22     18
D66V1, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                           26                             35
  CLUS_3                            7                             22
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P12.1) MUTATED        8     19     15
  DEL PEAK 43(20P12.1) WILD-TYPE     34     53     17
D66V2, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           19                             53
  CLUS_3                           15                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20P12.1) MUTATED        0     75     32     17
  DEL PEAK 43(20P12.1) WILD-TYPE     37     80    160     37
D66V3, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                            0                             37
  CLUS_2                           75                             80
  CLUS_3                           32                            160
  CLUS_4                           17                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P12.1) MUTATED       47     17     16
  DEL PEAK 43(20P12.1) WILD-TYPE     71     75     55
D66V4, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                           47                             71
  CLUS_2                           17                             75
  CLUS_3                           16                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20P12.1) MUTATED       19     41      7     28
  DEL PEAK 43(20P12.1) WILD-TYPE     59     86     19     66
D66V5, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                           19                             59
  CLUS_2                           41                             86
  CLUS_3                            7                             19
  CLUS_4                           28                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(20P12.1) MUTATED       15     17     21     19     21      2
  DEL PEAK 43(20P12.1) WILD-TYPE     44     31     35     49     47     24
D66V6, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                           15                             44
  CLUS_2                           17                             31
  CLUS_3                           21                             35
  CLUS_4                           19                             49
  CLUS_5                           21                             47
  CLUS_6                            2                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(20P12.1) MUTATED        8     48     17     16     32
  DEL PEAK 43(20P12.1) WILD-TYPE     25     65     54     74     84
D66V7, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           48                             65
  CLUS_3                           17                             54
  CLUS_4                           16                             74
  CLUS_5                           32                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(20P12.1) MUTATED       30     33     11     37     10
  DEL PEAK 43(20P12.1) WILD-TYPE     45     63     77     91     26
D66V8, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                           30                             45
  CLUS_2                           33                             63
  CLUS_3                           11                             77
  CLUS_4                           37                             91
  CLUS_5                           10                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P12.1) MUTATED       52     17     46
  DEL PEAK 43(20P12.1) WILD-TYPE    108     48    126
D66V9, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                           52                            108
  CLUS_2                           17                             48
  CLUS_3                           46                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20P12.1) MUTATED       38     15     31     31
  DEL PEAK 43(20P12.1) WILD-TYPE     97     35     46    104
D66V10, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                           38                             97
  CLUS_2                           15                             35
  CLUS_3                           31                             46
  CLUS_4                           31                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(20P12.1) MUTATED       32     18     20
  DEL PEAK 43(20P12.1) WILD-TYPE     47     60     43
D66V11, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           18                             60
  CLUS_3                           20                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(20P12.1) MUTATED       27     12     22      9
  DEL PEAK 43(20P12.1) WILD-TYPE     39     39     61     11
D66V12, multiclass
        clus
vv       DEL PEAK 43(20P12.1) MUTATED DEL PEAK 43(20P12.1) WILD-TYPE
  CLUS_1                           27                             39
  CLUS_2                           12                             39
  CLUS_3                           22                             61
  CLUS_4                            9                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 44(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED        6     26      7      3
  DEL PEAK 44(20P12.1) WILD-TYPE     29     35     22     18
D67V1, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                           26                             35
  CLUS_3                            7                             22
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED        8     19     15
  DEL PEAK 44(20P12.1) WILD-TYPE     34     53     17
D67V2, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           19                             53
  CLUS_3                           15                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED        0     75     32     17
  DEL PEAK 44(20P12.1) WILD-TYPE     37     80    160     37
D67V3, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                            0                             37
  CLUS_2                           75                             80
  CLUS_3                           32                            160
  CLUS_4                           17                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED       47     17     16
  DEL PEAK 44(20P12.1) WILD-TYPE     71     75     55
D67V4, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           47                             71
  CLUS_2                           17                             75
  CLUS_3                           16                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED       19     41      7     28
  DEL PEAK 44(20P12.1) WILD-TYPE     59     86     19     66
D67V5, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           19                             59
  CLUS_2                           41                             86
  CLUS_3                            7                             19
  CLUS_4                           28                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(20P12.1) MUTATED       15     17     21     19     21      2
  DEL PEAK 44(20P12.1) WILD-TYPE     44     31     35     49     47     24
D67V6, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           15                             44
  CLUS_2                           17                             31
  CLUS_3                           21                             35
  CLUS_4                           19                             49
  CLUS_5                           21                             47
  CLUS_6                            2                             24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(20P12.1) MUTATED        8     48     17     16     32
  DEL PEAK 44(20P12.1) WILD-TYPE     25     65     54     74     84
D67V7, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           48                             65
  CLUS_3                           17                             54
  CLUS_4                           16                             74
  CLUS_5                           32                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(20P12.1) MUTATED       30     33     11     37     10
  DEL PEAK 44(20P12.1) WILD-TYPE     45     63     77     91     26
D67V8, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           30                             45
  CLUS_2                           33                             63
  CLUS_3                           11                             77
  CLUS_4                           37                             91
  CLUS_5                           10                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED       52     17     46
  DEL PEAK 44(20P12.1) WILD-TYPE    108     48    126
D67V9, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           52                            108
  CLUS_2                           17                             48
  CLUS_3                           46                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED       38     15     31     31
  DEL PEAK 44(20P12.1) WILD-TYPE     97     35     46    104
D67V10, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           38                             97
  CLUS_2                           15                             35
  CLUS_3                           31                             46
  CLUS_4                           31                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(20P12.1) MUTATED       32     18     20
  DEL PEAK 44(20P12.1) WILD-TYPE     47     60     43
D67V11, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           32                             47
  CLUS_2                           18                             60
  CLUS_3                           20                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(20P12.1) MUTATED       27     12     22      9
  DEL PEAK 44(20P12.1) WILD-TYPE     39     39     61     11
D67V12, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           27                             39
  CLUS_2                           12                             39
  CLUS_3                           22                             61
  CLUS_4                            9                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 45(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED        7     29      6      6
  DEL PEAK 45(21Q11.2) WILD-TYPE     28     32     23     15
D68V1, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                            7                             28
  CLUS_2                           29                             32
  CLUS_3                            6                             23
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED        8     27     13
  DEL PEAK 45(21Q11.2) WILD-TYPE     34     45     19
D68V2, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                            8                             34
  CLUS_2                           27                             45
  CLUS_3                           13                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       20     73     33     11
  DEL PEAK 45(21Q11.2) WILD-TYPE     17     82    159     43
D68V3, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           20                             17
  CLUS_2                           73                             82
  CLUS_3                           33                            159
  CLUS_4                           11                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       44     20     22
  DEL PEAK 45(21Q11.2) WILD-TYPE     74     72     49
D68V4, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           44                             74
  CLUS_2                           20                             72
  CLUS_3                           22                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       26     44     10     21
  DEL PEAK 45(21Q11.2) WILD-TYPE     52     83     16     73
D68V5, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           26                             52
  CLUS_2                           44                             83
  CLUS_3                           10                             16
  CLUS_4                           21                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(21Q11.2) MUTATED       19     15     20     23     18      6
  DEL PEAK 45(21Q11.2) WILD-TYPE     40     33     36     45     50     20
D68V6, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           19                             40
  CLUS_2                           15                             33
  CLUS_3                           20                             36
  CLUS_4                           23                             45
  CLUS_5                           18                             50
  CLUS_6                            6                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(21Q11.2) MUTATED        6     48     23     13     42
  DEL PEAK 45(21Q11.2) WILD-TYPE     27     65     48     77     74
D68V7, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                           48                             65
  CLUS_3                           23                             48
  CLUS_4                           13                             77
  CLUS_5                           42                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(21Q11.2) MUTATED       33     31     16     48      4
  DEL PEAK 45(21Q11.2) WILD-TYPE     42     65     72     80     32
D68V8, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           33                             42
  CLUS_2                           31                             65
  CLUS_3                           16                             72
  CLUS_4                           48                             80
  CLUS_5                            4                             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       48     21     53
  DEL PEAK 45(21Q11.2) WILD-TYPE    112     44    119
D68V9, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           48                            112
  CLUS_2                           21                             44
  CLUS_3                           53                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       41     14     32     35
  DEL PEAK 45(21Q11.2) WILD-TYPE     94     36     45    100
D68V10, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           41                             94
  CLUS_2                           14                             36
  CLUS_3                           32                             45
  CLUS_4                           35                            100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(21Q11.2) MUTATED       35     11     22
  DEL PEAK 45(21Q11.2) WILD-TYPE     44     67     41
D68V11, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           35                             44
  CLUS_2                           11                             67
  CLUS_3                           22                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(21Q11.2) MUTATED       24      9     26      9
  DEL PEAK 45(21Q11.2) WILD-TYPE     42     42     57     11
D68V12, multiclass
        clus
vv       DEL PEAK 45(21Q11.2) MUTATED DEL PEAK 45(21Q11.2) WILD-TYPE
  CLUS_1                           24                             42
  CLUS_2                            9                             42
  CLUS_3                           26                             57
  CLUS_4                            9                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 46(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED        8     34      5     10
  DEL PEAK 46(22Q13.32) WILD-TYPE     27     27     24     11
D69V1, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                             8                              27
  CLUS_2                            34                              27
  CLUS_3                             5                              24
  CLUS_4                            10                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED        6     35     16
  DEL PEAK 46(22Q13.32) WILD-TYPE     36     37     16
D69V2, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                            35                              37
  CLUS_3                            16                              16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       22     92     26     14
  DEL PEAK 46(22Q13.32) WILD-TYPE     15     63    166     40
D69V3, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            22                              15
  CLUS_2                            92                              63
  CLUS_3                            26                             166
  CLUS_4                            14                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       49     17     27
  DEL PEAK 46(22Q13.32) WILD-TYPE     69     75     44
D69V4, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            49                              69
  CLUS_2                            17                              75
  CLUS_3                            27                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       31     43     11     23
  DEL PEAK 46(22Q13.32) WILD-TYPE     47     84     15     71
D69V5, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            31                              47
  CLUS_2                            43                              84
  CLUS_3                            11                              15
  CLUS_4                            23                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(22Q13.32) MUTATED       22     19     15     27     16      9
  DEL PEAK 46(22Q13.32) WILD-TYPE     37     29     41     41     52     17
D69V6, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            22                              37
  CLUS_2                            19                              29
  CLUS_3                            15                              41
  CLUS_4                            27                              41
  CLUS_5                            16                              52
  CLUS_6                             9                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(22Q13.32) MUTATED        8     51     28     10     51
  DEL PEAK 46(22Q13.32) WILD-TYPE     25     62     43     80     65
D69V7, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                             8                              25
  CLUS_2                            51                              62
  CLUS_3                            28                              43
  CLUS_4                            10                              80
  CLUS_5                            51                              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(22Q13.32) MUTATED       35     37     12     60      4
  DEL PEAK 46(22Q13.32) WILD-TYPE     40     59     76     68     32
D69V8, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            35                              40
  CLUS_2                            37                              59
  CLUS_3                            12                              76
  CLUS_4                            60                              68
  CLUS_5                             4                              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       48     25     62
  DEL PEAK 46(22Q13.32) WILD-TYPE    112     40    110
D69V9, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            48                             112
  CLUS_2                            25                              40
  CLUS_3                            62                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       43     15     29     48
  DEL PEAK 46(22Q13.32) WILD-TYPE     92     35     48     87
D69V10, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            43                              92
  CLUS_2                            15                              35
  CLUS_3                            29                              48
  CLUS_4                            48                              87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(22Q13.32) MUTATED       35      9     26
  DEL PEAK 46(22Q13.32) WILD-TYPE     44     69     37
D69V11, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            35                              44
  CLUS_2                             9                              69
  CLUS_3                            26                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(22Q13.32) MUTATED       24      7     30      9
  DEL PEAK 46(22Q13.32) WILD-TYPE     42     44     53     11
D69V12, multiclass
        clus
vv       DEL PEAK 46(22Q13.32) MUTATED DEL PEAK 46(22Q13.32) WILD-TYPE
  CLUS_1                            24                              42
  CLUS_2                             7                              44
  CLUS_3                            30                              53
  CLUS_4                             9                              11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
