[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"            "-oTCOADREAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/COADREAD-TP/10668129/COADREAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/COADREAD-TP/10013759/transformed.cor.cli.txt"

nPatients in clinical file=616, in cluster file=600, common to both=600
[1]  75 600
[1] "AMP PEAK  1(1Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE 
                          142                           458 
  AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE 
                          142                           458 
[1] "AMP PEAK  2(2Q33.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE 
                          134                           466 
  AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE 
                          134                           466 
[1] "AMP PEAK  3(5P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE 
                        112                         488 
  AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE 
                        112                         488 
[1] "AMP PEAK  4(5Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE 
                           63                           537 
  AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE 
                           63                           537 
[1] "AMP PEAK  5(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                          151                           449 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                          151                           449 
[1] "AMP PEAK  6(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE 
                           206                            394 
  AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE 
                           206                            394 
[1] "AMP PEAK  7(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE 
                           250                            350 
  AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE 
                           250                            350 
[1] "AMP PEAK  8(8Q12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE 
                          322                           278 
  AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE 
                          322                           278 
[1] "AMP PEAK  9(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                           357                            243 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                           357                            243 
[1] "AMP PEAK 10(10Q22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE 
                            36                            564 
  AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE 
                            36                            564 
[1] "AMP PEAK 11(11P15.5) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE 
                           135                            465 
  AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE 
                           135                            465 
[1] "AMP PEAK 12(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE 
                            147                             453 
  AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE 
                            147                             453 
[1] "AMP PEAK 13(13Q12.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            390                             210 
  AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE 
                            390                             210 
[1] "AMP PEAK 14(13Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           385                            215 
  AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE 
                           385                            215 
[1] "AMP PEAK 15(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                           387                            213 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                           387                            213 
[1] "AMP PEAK 16(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            42                            558 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            42                            558 
[1] "AMP PEAK 17(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                           166                            434 
  AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE 
                           166                            434 
[1] "AMP PEAK 18(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                         152                          448 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                         152                          448 
[1] "AMP PEAK 19(17Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                           138                            462 
  AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE 
                           138                            462 
[1] "AMP PEAK 20(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           105                            495 
  AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE 
                           105                            495 
[1] "AMP PEAK 21(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                         132                          468 
  AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE 
                         132                          468 
[1] "AMP PEAK 22(20P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE 
                            315                             285 
  AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE 
                            315                             285 
[1] "AMP PEAK 23(20P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE 
                            354                             246 
  AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE 
                            354                             246 
[1] "AMP PEAK 24(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE 
                            457                             143 
  AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE 
                            457                             143 
[1] "AMP PEAK 25(20Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE 
                         459                          141 
  AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE 
                         459                          141 
[1] "AMP PEAK 26(20Q13.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE 
                            461                             139 
  AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE 
                            461                             139 
[1] "AMP PEAK 27(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE 
                        121                         479 
  AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE 
                        121                         479 
[1] "DEL PEAK  1(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           238                            362 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           238                            362 
[1] "DEL PEAK  2(1P33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        171                         429 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        171                         429 
[1] "DEL PEAK  3(1P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                          171                           429 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                          171                           429 
[1] "DEL PEAK  4(2P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         21                         579 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         21                         579 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           34                           566 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           34                           566 
[1] "DEL PEAK  6(2Q37.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           31                           569 
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           31                           569 
[1] "DEL PEAK  7(3P26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE 
                           91                           509 
  DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE 
                           91                           509 
[1] "DEL PEAK  8(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                          112                           488 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                          112                           488 
[1] "DEL PEAK  9(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            62                            538 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            62                            538 
[1] "DEL PEAK 10(4P16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE 
                          195                           405 
  DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE 
                          195                           405 
[1] "DEL PEAK 11(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                          216                           384 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                          216                           384 
[1] "DEL PEAK 12(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                          225                           375 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                          225                           375 
[1] "DEL PEAK 13(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                          151                           449 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                          151                           449 
[1] "DEL PEAK 14(5Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          182                           418 
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          182                           418 
[1] "DEL PEAK 15(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           79                           521 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           79                           521 
[1] "DEL PEAK 16(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                         90                         510 
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                         90                         510 
[1] "DEL PEAK 17(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           16                           584 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           16                           584 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          282                           318 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          282                           318 
[1] "DEL PEAK 19(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE 
                        297                         303 
  DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE 
                        297                         303 
[1] "DEL PEAK 20(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE 
                           130                            470 
  DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE 
                           130                            470 
[1] "DEL PEAK 21(8Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE 
                           46                           554 
  DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE 
                           46                           554 
[1] "DEL PEAK 22(9P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE 
                           81                           519 
  DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE 
                           81                           519 
[1] "DEL PEAK 23(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                           128                            472 
  DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE 
                           128                            472 
[1] "DEL PEAK 24(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            156                             444 
  DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE 
                            156                             444 
[1] "DEL PEAK 25(10Q25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE 
                           152                            448 
  DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE 
                           152                            448 
[1] "DEL PEAK 26(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE 
                           111                            489 
  DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE 
                           111                            489 
[1] "DEL PEAK 27(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE 
                            90                            510 
  DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE 
                            90                            510 
[1] "DEL PEAK 28(12Q21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE 
                             88                             512 
  DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE 
                             88                             512 
[1] "DEL PEAK 29(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE 
                           204                            396 
  DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE 
                           204                            396 
[1] "DEL PEAK 30(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE 
                           211                            389 
  DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE 
                           211                            389 
[1] "DEL PEAK 31(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE 
                           212                            388 
  DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE 
                           212                            388 
[1] "DEL PEAK 32(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE 
                           245                            355 
  DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE 
                           245                            355 
[1] "DEL PEAK 33(15Q15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE 
                           243                            357 
  DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE 
                           243                            357 
[1] "DEL PEAK 34(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE 
                           240                            360 
  DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE 
                           240                            360 
[1] "DEL PEAK 35(15Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE 
                            231                             369 
  DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE 
                            231                             369 
[1] "DEL PEAK 36(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE 
                            68                            532 
  DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE 
                            68                            532 
[1] "DEL PEAK 37(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                            82                            518 
  DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE 
                            82                            518 
[1] "DEL PEAK 38(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE 
                         360                          240 
  DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE 
                         360                          240 
[1] "DEL PEAK 39(17Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE 
                            90                            510 
  DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE 
                            90                            510 
[1] "DEL PEAK 40(18P11.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE 
                            358                             242 
  DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE 
                            358                             242 
[1] "DEL PEAK 41(18Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE 
                           402                            198 
  DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE 
                           402                            198 
[1] "DEL PEAK 42(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                           420                            180 
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                           420                            180 
[1] "DEL PEAK 43(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE 
                           415                            185 
  DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE 
                           415                            185 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                            97                            503 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                            97                            503 
[1] "DEL PEAK 45(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                           184                            416 
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                           184                            416 
[1] "DEL PEAK 46(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE 
                           184                            416 
  DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE 
                           184                            416 
[1] "DEL PEAK 47(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE 
                           208                            392 
  DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE 
                           208                            392 
[1] "DEL PEAK 48(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE 
                            222                             378 
  DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE 
                            222                             378 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 600 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 600 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED        9     13     18      6
  AMP PEAK  1(1Q31.1) WILD-TYPE     34     49     51     35
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           9                            34
  CLUS_2                          13                            49
  CLUS_3                          18                            51
  CLUS_4                           6                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED        7      9     19     11
  AMP PEAK  1(1Q31.1) WILD-TYPE     42     32     57     38
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           7                            42
  CLUS_2                           9                            32
  CLUS_3                          19                            57
  CLUS_4                          11                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED       33     66     30     13
  AMP PEAK  1(1Q31.1) WILD-TYPE    202    151     83     22
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          33                           202
  CLUS_2                          66                           151
  CLUS_3                          30                            83
  CLUS_4                          13                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       27     42     26
  AMP PEAK  1(1Q31.1) WILD-TYPE     71    113     95
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          27                            71
  CLUS_2                          42                           113
  CLUS_3                          26                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED       24     50      8     27
  AMP PEAK  1(1Q31.1) WILD-TYPE     73    128     31    110
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          24                            73
  CLUS_2                          50                           128
  CLUS_3                           8                            31
  CLUS_4                          27                           110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       14     79     16
  AMP PEAK  1(1Q31.1) WILD-TYPE     38    223     81
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          14                            38
  CLUS_2                          79                           223
  CLUS_3                          16                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q31.1) MUTATED       31     32     34     41
  AMP PEAK  1(1Q31.1) WILD-TYPE     96     98    105    147
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          31                            96
  CLUS_2                          32                            98
  CLUS_3                          34                           105
  CLUS_4                          41                           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q31.1) MUTATED       12     28      7     12     24     21
  AMP PEAK  1(1Q31.1) WILD-TYPE     52     79     38     53     42     75
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q31.1) MUTATED       34
  AMP PEAK  1(1Q31.1) WILD-TYPE    107
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          12                            52
  CLUS_2                          28                            79
  CLUS_3                           7                            38
  CLUS_4                          12                            53
  CLUS_5                          24                            42
  CLUS_6                          21                            75
  CLUS_7                          34                           107
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       49     28     51
  AMP PEAK  1(1Q31.1) WILD-TYPE    162     67    181
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          49                           162
  CLUS_2                          28                            67
  CLUS_3                          51                           181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       54     27     47
  AMP PEAK  1(1Q31.1) WILD-TYPE    174    112    124
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          54                           174
  CLUS_2                          27                           112
  CLUS_3                          47                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q31.1) MUTATED       22     19     29
  AMP PEAK  1(1Q31.1) WILD-TYPE     78     90     56
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          22                            78
  CLUS_2                          19                            90
  CLUS_3                          29                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q31.1) MUTATED       22     12     20      9      7
  AMP PEAK  1(1Q31.1) WILD-TYPE     60     40     47     24     53
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          22                            60
  CLUS_2                          12                            40
  CLUS_3                          20                            47
  CLUS_4                           9                            24
  CLUS_5                           7                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(2Q33.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED        6     15     17      3
  AMP PEAK  2(2Q33.1) WILD-TYPE     37     47     52     38
D2V1, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           6                            37
  CLUS_2                          15                            47
  CLUS_3                          17                            52
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED        5     15      7     14
  AMP PEAK  2(2Q33.1) WILD-TYPE     44     26     69     35
D2V2, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           5                            44
  CLUS_2                          15                            26
  CLUS_3                           7                            69
  CLUS_4                          14                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       29     66     24     15
  AMP PEAK  2(2Q33.1) WILD-TYPE    206    151     89     20
D2V3, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          29                           206
  CLUS_2                          66                           151
  CLUS_3                          24                            89
  CLUS_4                          15                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       21     52     18
  AMP PEAK  2(2Q33.1) WILD-TYPE     77    103    103
D2V4, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          21                            77
  CLUS_2                          52                           103
  CLUS_3                          18                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       27     43      7     24
  AMP PEAK  2(2Q33.1) WILD-TYPE     70    135     32    113
D2V5, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          27                            70
  CLUS_2                          43                           135
  CLUS_3                           7                            32
  CLUS_4                          24                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       14     67     20
  AMP PEAK  2(2Q33.1) WILD-TYPE     38    235     77
D2V6, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          14                            38
  CLUS_2                          67                           235
  CLUS_3                          20                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(2Q33.1) MUTATED       33     14     47     36
  AMP PEAK  2(2Q33.1) WILD-TYPE     94    116     92    152
D2V7, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          33                            94
  CLUS_2                          14                           116
  CLUS_3                          47                            92
  CLUS_4                          36                           152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(2Q33.1) MUTATED       12     22      4     22     25      9
  AMP PEAK  2(2Q33.1) WILD-TYPE     52     85     41     43     41     87
                               vv
clus                            CLUS_7
  AMP PEAK  2(2Q33.1) MUTATED       36
  AMP PEAK  2(2Q33.1) WILD-TYPE    105
D2V8, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          12                            52
  CLUS_2                          22                            85
  CLUS_3                           4                            41
  CLUS_4                          22                            43
  CLUS_5                          25                            41
  CLUS_6                           9                            87
  CLUS_7                          36                           105
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       58     19     42
  AMP PEAK  2(2Q33.1) WILD-TYPE    153     76    190
D2V9, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          58                           153
  CLUS_2                          19                            76
  CLUS_3                          42                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       50     40     29
  AMP PEAK  2(2Q33.1) WILD-TYPE    178     99    142
D2V10, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          50                           178
  CLUS_2                          40                            99
  CLUS_3                          29                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(2Q33.1) MUTATED       25     22     27
  AMP PEAK  2(2Q33.1) WILD-TYPE     75     87     58
D2V11, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          25                            75
  CLUS_2                          22                            87
  CLUS_3                          27                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(2Q33.1) MUTATED       15     18     21     14      6
  AMP PEAK  2(2Q33.1) WILD-TYPE     67     34     46     19     54
D2V12, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          15                            67
  CLUS_2                          18                            34
  CLUS_3                          21                            46
  CLUS_4                          14                            19
  CLUS_5                           6                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(5P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED        7     20     12      7
  AMP PEAK  3(5P12) WILD-TYPE     36     42     57     34
D3V1, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         7                          36
  CLUS_2                        20                          42
  CLUS_3                        12                          57
  CLUS_4                         7                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED        8     16     11     11
  AMP PEAK  3(5P12) WILD-TYPE     41     25     65     38
D3V2, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         8                          41
  CLUS_2                        16                          25
  CLUS_3                        11                          65
  CLUS_4                        11                          38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       20     55     27     10
  AMP PEAK  3(5P12) WILD-TYPE    215    162     86     25
D3V3, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        20                         215
  CLUS_2                        55                         162
  CLUS_3                        27                          86
  CLUS_4                        10                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       15     29     22
  AMP PEAK  3(5P12) WILD-TYPE     83    126     99
D3V4, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        15                          83
  CLUS_2                        29                         126
  CLUS_3                        22                          99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       25     27     14     17
  AMP PEAK  3(5P12) WILD-TYPE     72    151     25    120
D3V5, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        25                          72
  CLUS_2                        27                         151
  CLUS_3                        14                          25
  CLUS_4                        17                         120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       14     56     13
  AMP PEAK  3(5P12) WILD-TYPE     38    246     84
D3V6, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        14                          38
  CLUS_2                        56                         246
  CLUS_3                        13                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(5P12) MUTATED       26     10     34     40
  AMP PEAK  3(5P12) WILD-TYPE    101    120    105    148
D3V7, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        26                         101
  CLUS_2                        10                         120
  CLUS_3                        34                         105
  CLUS_4                        40                         148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  3(5P12) MUTATED       14      9      5     14     17     16     35
  AMP PEAK  3(5P12) WILD-TYPE     50     98     40     51     49     80    106
D3V8, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        14                          50
  CLUS_2                         9                          98
  CLUS_3                         5                          40
  CLUS_4                        14                          51
  CLUS_5                        17                          49
  CLUS_6                        16                          80
  CLUS_7                        35                         106
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       39     19     42
  AMP PEAK  3(5P12) WILD-TYPE    172     76    190
D3V9, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        39                         172
  CLUS_2                        19                          76
  CLUS_3                        42                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       38     24     38
  AMP PEAK  3(5P12) WILD-TYPE    190    115    133
D3V10, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        38                         190
  CLUS_2                        24                         115
  CLUS_3                        38                         133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(5P12) MUTATED       26      6     19
  AMP PEAK  3(5P12) WILD-TYPE     74    103     66
D3V11, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        26                          74
  CLUS_2                         6                         103
  CLUS_3                        19                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(5P12) MUTATED       14     11     17      7      2
  AMP PEAK  3(5P12) WILD-TYPE     68     41     50     26     58
D3V12, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        14                          68
  CLUS_2                        11                          41
  CLUS_3                        17                          50
  CLUS_4                         7                          26
  CLUS_5                         2                          58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED        2      8      7      4
  AMP PEAK  4(5Q22.3) WILD-TYPE     41     54     62     37
D4V1, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           8                            54
  CLUS_3                           7                            62
  CLUS_4                           4                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED        3      6      7      5
  AMP PEAK  4(5Q22.3) WILD-TYPE     46     35     69     44
D4V2, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           3                            46
  CLUS_2                           6                            35
  CLUS_3                           7                            69
  CLUS_4                           5                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED       14     35     11      3
  AMP PEAK  4(5Q22.3) WILD-TYPE    221    182    102     32
D4V3, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          14                           221
  CLUS_2                          35                           182
  CLUS_3                          11                           102
  CLUS_4                           3                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       12     19     10
  AMP PEAK  4(5Q22.3) WILD-TYPE     86    136    111
D4V4, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          12                            86
  CLUS_2                          19                           136
  CLUS_3                          10                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED        9     15      4     19
  AMP PEAK  4(5Q22.3) WILD-TYPE     88    163     35    118
D4V5, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           9                            88
  CLUS_2                          15                           163
  CLUS_3                           4                            35
  CLUS_4                          19                           118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED        7     27     13
  AMP PEAK  4(5Q22.3) WILD-TYPE     45    275     84
D4V6, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          27                           275
  CLUS_3                          13                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5Q22.3) MUTATED       13     10     16     22
  AMP PEAK  4(5Q22.3) WILD-TYPE    114    120    123    166
D4V7, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          13                           114
  CLUS_2                          10                           120
  CLUS_3                          16                           123
  CLUS_4                          22                           166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5Q22.3) MUTATED        6     10      1      9      8      6
  AMP PEAK  4(5Q22.3) WILD-TYPE     58     97     44     56     58     90
                               vv
clus                            CLUS_7
  AMP PEAK  4(5Q22.3) MUTATED       21
  AMP PEAK  4(5Q22.3) WILD-TYPE    120
D4V8, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           6                            58
  CLUS_2                          10                            97
  CLUS_3                           1                            44
  CLUS_4                           9                            56
  CLUS_5                           8                            58
  CLUS_6                           6                            90
  CLUS_7                          21                           120
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       25      8     22
  AMP PEAK  4(5Q22.3) WILD-TYPE    186     87    210
D4V9, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          25                           186
  CLUS_2                           8                            87
  CLUS_3                          22                           210
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       21     10     24
  AMP PEAK  4(5Q22.3) WILD-TYPE    207    129    147
D4V10, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          21                           207
  CLUS_2                          10                           129
  CLUS_3                          24                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5Q22.3) MUTATED       13      7     10
  AMP PEAK  4(5Q22.3) WILD-TYPE     87    102     75
D4V11, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          13                            87
  CLUS_2                           7                           102
  CLUS_3                          10                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5Q22.3) MUTATED       10      5     10      4      1
  AMP PEAK  4(5Q22.3) WILD-TYPE     72     47     57     29     59
D4V12, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          10                            72
  CLUS_2                           5                            47
  CLUS_3                          10                            57
  CLUS_4                           4                            29
  CLUS_5                           1                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED        8     16     23      4
  AMP PEAK  5(6P21.1) WILD-TYPE     35     46     46     37
D5V1, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                           8                            35
  CLUS_2                          16                            46
  CLUS_3                          23                            46
  CLUS_4                           4                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED        4     12     13     22
  AMP PEAK  5(6P21.1) WILD-TYPE     45     29     63     27
D5V2, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                           4                            45
  CLUS_2                          12                            29
  CLUS_3                          13                            63
  CLUS_4                          22                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED       21     88     33      9
  AMP PEAK  5(6P21.1) WILD-TYPE    214    129     80     26
D5V3, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          21                           214
  CLUS_2                          88                           129
  CLUS_3                          33                            80
  CLUS_4                           9                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       25     48     26
  AMP PEAK  5(6P21.1) WILD-TYPE     73    107     95
D5V4, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          25                            73
  CLUS_2                          48                           107
  CLUS_3                          26                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED       27     50      9     30
  AMP PEAK  5(6P21.1) WILD-TYPE     70    128     30    107
D5V5, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          27                            70
  CLUS_2                          50                           128
  CLUS_3                           9                            30
  CLUS_4                          30                           107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       13     81     22
  AMP PEAK  5(6P21.1) WILD-TYPE     39    221     75
D5V6, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          13                            39
  CLUS_2                          81                           221
  CLUS_3                          22                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED       35     22     42     50
  AMP PEAK  5(6P21.1) WILD-TYPE     92    108     97    138
D5V7, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          35                            92
  CLUS_2                          22                           108
  CLUS_3                          42                            97
  CLUS_4                          50                           138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.1) MUTATED       14     28      5     19     26     12
  AMP PEAK  5(6P21.1) WILD-TYPE     50     79     40     46     40     84
                               vv
clus                            CLUS_7
  AMP PEAK  5(6P21.1) MUTATED       45
  AMP PEAK  5(6P21.1) WILD-TYPE     96
D5V8, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          14                            50
  CLUS_2                          28                            79
  CLUS_3                           5                            40
  CLUS_4                          19                            46
  CLUS_5                          26                            40
  CLUS_6                          12                            84
  CLUS_7                          45                            96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       65     22     55
  AMP PEAK  5(6P21.1) WILD-TYPE    146     73    177
D5V9, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          65                           146
  CLUS_2                          22                            73
  CLUS_3                          55                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       60     40     42
  AMP PEAK  5(6P21.1) WILD-TYPE    168     99    129
D5V10, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          60                           168
  CLUS_2                          40                            99
  CLUS_3                          42                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       38     19     27
  AMP PEAK  5(6P21.1) WILD-TYPE     62     90     58
D5V11, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          38                            62
  CLUS_2                          19                            90
  CLUS_3                          27                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(6P21.1) MUTATED       25     17     25     14      3
  AMP PEAK  5(6P21.1) WILD-TYPE     57     35     42     19     57
D5V12, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          25                            57
  CLUS_2                          17                            35
  CLUS_3                          25                            42
  CLUS_4                          14                            19
  CLUS_5                           3                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED        8     21     20     11
  AMP PEAK  6(8P11.23) WILD-TYPE     35     41     49     30
D6V1, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           21                             41
  CLUS_3                           20                             49
  CLUS_4                           11                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       11     14     17     18
  AMP PEAK  6(8P11.23) WILD-TYPE     38     27     59     31
D6V2, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           11                             38
  CLUS_2                           14                             27
  CLUS_3                           17                             59
  CLUS_4                           18                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       42     63     86     15
  AMP PEAK  6(8P11.23) WILD-TYPE    193    154     27     20
D6V3, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           42                            193
  CLUS_2                           63                            154
  CLUS_3                           86                             27
  CLUS_4                           15                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       34     66     43
  AMP PEAK  6(8P11.23) WILD-TYPE     64     89     78
D6V4, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           34                             64
  CLUS_2                           66                             89
  CLUS_3                           43                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       36     56     14     44
  AMP PEAK  6(8P11.23) WILD-TYPE     61    122     25     93
D6V5, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           36                             61
  CLUS_2                           56                            122
  CLUS_3                           14                             25
  CLUS_4                           44                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       17    100     33
  AMP PEAK  6(8P11.23) WILD-TYPE     35    202     64
D6V6, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           17                             35
  CLUS_2                          100                            202
  CLUS_3                           33                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(8P11.23) MUTATED       47     41     63     50
  AMP PEAK  6(8P11.23) WILD-TYPE     80     89     76    138
D6V7, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           47                             80
  CLUS_2                           41                             89
  CLUS_3                           63                             76
  CLUS_4                           50                            138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(8P11.23) MUTATED       21     38     17     31     30     20
  AMP PEAK  6(8P11.23) WILD-TYPE     43     69     28     34     36     76
                                vv
clus                             CLUS_7
  AMP PEAK  6(8P11.23) MUTATED       44
  AMP PEAK  6(8P11.23) WILD-TYPE     97
D6V8, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           21                             43
  CLUS_2                           38                             69
  CLUS_3                           17                             28
  CLUS_4                           31                             34
  CLUS_5                           30                             36
  CLUS_6                           20                             76
  CLUS_7                           44                             97
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       89     28     69
  AMP PEAK  6(8P11.23) WILD-TYPE    122     67    163
D6V9, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           89                            122
  CLUS_2                           28                             67
  CLUS_3                           69                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       88     50     48
  AMP PEAK  6(8P11.23) WILD-TYPE    140     89    123
D6V10, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           88                            140
  CLUS_2                           50                             89
  CLUS_3                           48                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(8P11.23) MUTATED       46     34     35
  AMP PEAK  6(8P11.23) WILD-TYPE     54     75     50
D6V11, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           46                             54
  CLUS_2                           34                             75
  CLUS_3                           35                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(8P11.23) MUTATED       31     29     27     10     18
  AMP PEAK  6(8P11.23) WILD-TYPE     51     23     40     23     42
D6V12, multiclass
        clus
vv       AMP PEAK  6(8P11.23) MUTATED AMP PEAK  6(8P11.23) WILD-TYPE
  CLUS_1                           31                             51
  CLUS_2                           29                             23
  CLUS_3                           27                             40
  CLUS_4                           10                             23
  CLUS_5                           18                             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       12     29     26     12
  AMP PEAK  7(8P11.21) WILD-TYPE     31     33     43     29
D7V1, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           12                             31
  CLUS_2                           29                             33
  CLUS_3                           26                             43
  CLUS_4                           12                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       13     20     25     21
  AMP PEAK  7(8P11.21) WILD-TYPE     36     21     51     28
D7V2, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           13                             36
  CLUS_2                           20                             21
  CLUS_3                           25                             51
  CLUS_4                           21                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       50     83    101     16
  AMP PEAK  7(8P11.21) WILD-TYPE    185    134     12     19
D7V3, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           50                            185
  CLUS_2                           83                            134
  CLUS_3                          101                             12
  CLUS_4                           16                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       43     78     48
  AMP PEAK  7(8P11.21) WILD-TYPE     55     77     73
D7V4, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           43                             55
  CLUS_2                           78                             77
  CLUS_3                           48                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       43     69     18     55
  AMP PEAK  7(8P11.21) WILD-TYPE     54    109     21     82
D7V5, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           43                             54
  CLUS_2                           69                            109
  CLUS_3                           18                             21
  CLUS_4                           55                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       26    119     40
  AMP PEAK  7(8P11.21) WILD-TYPE     26    183     57
D7V6, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           26                             26
  CLUS_2                          119                            183
  CLUS_3                           40                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(8P11.21) MUTATED       60     46     70     68
  AMP PEAK  7(8P11.21) WILD-TYPE     67     84     69    120
D7V7, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           60                             67
  CLUS_2                           46                             84
  CLUS_3                           70                             69
  CLUS_4                           68                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8P11.21) MUTATED       25     46     17     31     38     29
  AMP PEAK  7(8P11.21) WILD-TYPE     39     61     28     34     28     67
                                vv
clus                             CLUS_7
  AMP PEAK  7(8P11.21) MUTATED       58
  AMP PEAK  7(8P11.21) WILD-TYPE     83
D7V8, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           25                             39
  CLUS_2                           46                             61
  CLUS_3                           17                             28
  CLUS_4                           31                             34
  CLUS_5                           38                             28
  CLUS_6                           29                             67
  CLUS_7                           58                             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED      100     35     88
  AMP PEAK  7(8P11.21) WILD-TYPE    111     60    144
D7V9, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                          100                            111
  CLUS_2                           35                             60
  CLUS_3                           88                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED      101     60     62
  AMP PEAK  7(8P11.21) WILD-TYPE    127     79    109
D7V10, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                          101                            127
  CLUS_2                           60                             79
  CLUS_3                           62                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.21) MUTATED       50     44     39
  AMP PEAK  7(8P11.21) WILD-TYPE     50     65     46
D7V11, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           50                             50
  CLUS_2                           44                             65
  CLUS_3                           39                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8P11.21) MUTATED       39     29     33     12     20
  AMP PEAK  7(8P11.21) WILD-TYPE     43     23     34     21     40
D7V12, multiclass
        clus
vv       AMP PEAK  7(8P11.21) MUTATED AMP PEAK  7(8P11.21) WILD-TYPE
  CLUS_1                           39                             43
  CLUS_2                           29                             23
  CLUS_3                           33                             34
  CLUS_4                           12                             21
  CLUS_5                           20                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q12.1) MUTATED       20     37     34     15
  AMP PEAK  8(8Q12.1) WILD-TYPE     23     25     35     26
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          20                            23
  CLUS_2                          37                            25
  CLUS_3                          34                            35
  CLUS_4                          15                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q12.1) MUTATED       17     26     36     27
  AMP PEAK  8(8Q12.1) WILD-TYPE     32     15     40     22
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          17                            32
  CLUS_2                          26                            15
  CLUS_3                          36                            40
  CLUS_4                          27                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q12.1) MUTATED       67    119    110     26
  AMP PEAK  8(8Q12.1) WILD-TYPE    168     98      3      9
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          67                           168
  CLUS_2                         119                            98
  CLUS_3                         110                             3
  CLUS_4                          26                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       56    101     59
  AMP PEAK  8(8Q12.1) WILD-TYPE     42     54     62
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          56                            42
  CLUS_2                         101                            54
  CLUS_3                          59                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q12.1) MUTATED       63     85     24     69
  AMP PEAK  8(8Q12.1) WILD-TYPE     34     93     15     68
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          63                            34
  CLUS_2                          85                            93
  CLUS_3                          24                            15
  CLUS_4                          69                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       37    154     50
  AMP PEAK  8(8Q12.1) WILD-TYPE     15    148     47
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          37                            15
  CLUS_2                         154                           148
  CLUS_3                          50                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q12.1) MUTATED       77     49     92     96
  AMP PEAK  8(8Q12.1) WILD-TYPE     50     81     47     92
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          77                            50
  CLUS_2                          49                            81
  CLUS_3                          92                            47
  CLUS_4                          96                            92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q12.1) MUTATED       35     53     18     47     43     39
  AMP PEAK  8(8Q12.1) WILD-TYPE     29     54     27     18     23     57
                               vv
clus                            CLUS_7
  AMP PEAK  8(8Q12.1) MUTATED       79
  AMP PEAK  8(8Q12.1) WILD-TYPE     62
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          35                            29
  CLUS_2                          53                            54
  CLUS_3                          18                            27
  CLUS_4                          47                            18
  CLUS_5                          43                            23
  CLUS_6                          39                            57
  CLUS_7                          79                            62
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED      126     48    117
  AMP PEAK  8(8Q12.1) WILD-TYPE     85     47    115
D8V9, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                         126                            85
  CLUS_2                          48                            47
  CLUS_3                         117                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED      120     89     82
  AMP PEAK  8(8Q12.1) WILD-TYPE    108     50     89
D8V10, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                         120                           108
  CLUS_2                          89                            50
  CLUS_3                          82                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q12.1) MUTATED       66     49     55
  AMP PEAK  8(8Q12.1) WILD-TYPE     34     60     30
D8V11, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          66                            34
  CLUS_2                          49                            60
  CLUS_3                          55                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q12.1) MUTATED       46     38     42     23     21
  AMP PEAK  8(8Q12.1) WILD-TYPE     36     14     25     10     39
D8V12, multiclass
        clus
vv       AMP PEAK  8(8Q12.1) MUTATED AMP PEAK  8(8Q12.1) WILD-TYPE
  CLUS_1                          46                            36
  CLUS_2                          38                            14
  CLUS_3                          42                            25
  CLUS_4                          23                            10
  CLUS_5                          21                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       23     41     39     19
  AMP PEAK  9(8Q24.21) WILD-TYPE     20     21     30     22
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           23                             20
  CLUS_2                           41                             21
  CLUS_3                           39                             30
  CLUS_4                           19                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       23     30     39     30
  AMP PEAK  9(8Q24.21) WILD-TYPE     26     11     37     19
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           23                             26
  CLUS_2                           30                             11
  CLUS_3                           39                             37
  CLUS_4                           30                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       78    140    112     27
  AMP PEAK  9(8Q24.21) WILD-TYPE    157     77      1      8
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           78                            157
  CLUS_2                          140                             77
  CLUS_3                          112                              1
  CLUS_4                           27                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       58    114     62
  AMP PEAK  9(8Q24.21) WILD-TYPE     40     41     59
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           58                             40
  CLUS_2                          114                             41
  CLUS_3                           62                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       68     98     27     74
  AMP PEAK  9(8Q24.21) WILD-TYPE     29     80     12     63
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           68                             29
  CLUS_2                           98                             80
  CLUS_3                           27                             12
  CLUS_4                           74                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       39    171     57
  AMP PEAK  9(8Q24.21) WILD-TYPE     13    131     40
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           39                             13
  CLUS_2                          171                            131
  CLUS_3                           57                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.21) MUTATED       83     56    102    109
  AMP PEAK  9(8Q24.21) WILD-TYPE     44     74     37     79
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           83                             44
  CLUS_2                           56                             74
  CLUS_3                          102                             37
  CLUS_4                          109                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.21) MUTATED       38     59     21     49     48     47
  AMP PEAK  9(8Q24.21) WILD-TYPE     26     48     24     16     18     49
                                vv
clus                             CLUS_7
  AMP PEAK  9(8Q24.21) MUTATED       88
  AMP PEAK  9(8Q24.21) WILD-TYPE     53
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           38                             26
  CLUS_2                           59                             48
  CLUS_3                           21                             24
  CLUS_4                           49                             16
  CLUS_5                           48                             18
  CLUS_6                           47                             49
  CLUS_7                           88                             53
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED      138     54    132
  AMP PEAK  9(8Q24.21) WILD-TYPE     73     41    100
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                          138                             73
  CLUS_2                           54                             41
  CLUS_3                          132                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED      134     96     94
  AMP PEAK  9(8Q24.21) WILD-TYPE     94     43     77
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                          134                             94
  CLUS_2                           96                             43
  CLUS_3                           94                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.21) MUTATED       73     54     58
  AMP PEAK  9(8Q24.21) WILD-TYPE     27     55     27
D9V11, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           73                             27
  CLUS_2                           54                             55
  CLUS_3                           58                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8Q24.21) MUTATED       51     41     46     24     23
  AMP PEAK  9(8Q24.21) WILD-TYPE     31     11     21      9     37
D9V12, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           51                             31
  CLUS_2                           41                             11
  CLUS_3                           46                             21
  CLUS_4                           24                              9
  CLUS_5                           23                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(10Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(10Q22.3) MUTATED        2      3      4      2
  AMP PEAK 10(10Q22.3) WILD-TYPE     41     59     65     39
D10V1, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            2                             41
  CLUS_2                            3                             59
  CLUS_3                            4                             65
  CLUS_4                            2                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(10Q22.3) MUTATED        2      1      5      3
  AMP PEAK 10(10Q22.3) WILD-TYPE     47     40     71     46
D10V2, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            2                             47
  CLUS_2                            1                             40
  CLUS_3                            5                             71
  CLUS_4                            3                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(10Q22.3) MUTATED       10     16      7      3
  AMP PEAK 10(10Q22.3) WILD-TYPE    225    201    106     32
D10V3, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                           10                            225
  CLUS_2                           16                            201
  CLUS_3                            7                            106
  CLUS_4                            3                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10Q22.3) MUTATED        5      9     10
  AMP PEAK 10(10Q22.3) WILD-TYPE     93    146    111
D10V4, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            5                             93
  CLUS_2                            9                            146
  CLUS_3                           10                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(10Q22.3) MUTATED        4     10      1     13
  AMP PEAK 10(10Q22.3) WILD-TYPE     93    168     38    124
D10V5, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            4                             93
  CLUS_2                           10                            168
  CLUS_3                            1                             38
  CLUS_4                           13                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10Q22.3) MUTATED        4     17      7
  AMP PEAK 10(10Q22.3) WILD-TYPE     48    285     90
D10V6, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                           17                            285
  CLUS_3                            7                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(10Q22.3) MUTATED        6      6     11     12
  AMP PEAK 10(10Q22.3) WILD-TYPE    121    124    128    176
D10V7, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            6                            121
  CLUS_2                            6                            124
  CLUS_3                           11                            128
  CLUS_4                           12                            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(10Q22.3) MUTATED        4      8      1      6      2      9
  AMP PEAK 10(10Q22.3) WILD-TYPE     60     99     44     59     64     87
                                vv
clus                             CLUS_7
  AMP PEAK 10(10Q22.3) MUTATED        5
  AMP PEAK 10(10Q22.3) WILD-TYPE    136
D10V8, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            4                             60
  CLUS_2                            8                             99
  CLUS_3                            1                             44
  CLUS_4                            6                             59
  CLUS_5                            2                             64
  CLUS_6                            9                             87
  CLUS_7                            5                            136
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10Q22.3) MUTATED       17      4     13
  AMP PEAK 10(10Q22.3) WILD-TYPE    194     91    219
D10V9, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                           17                            194
  CLUS_2                            4                             91
  CLUS_3                           13                            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10Q22.3) MUTATED       15      8     11
  AMP PEAK 10(10Q22.3) WILD-TYPE    213    131    160
D10V10, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                           15                            213
  CLUS_2                            8                            131
  CLUS_3                           11                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(10Q22.3) MUTATED       13      2      6
  AMP PEAK 10(10Q22.3) WILD-TYPE     87    107     79
D10V11, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                           13                             87
  CLUS_2                            2                            107
  CLUS_3                            6                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(10Q22.3) MUTATED        7      5      5      3      1
  AMP PEAK 10(10Q22.3) WILD-TYPE     75     47     62     30     59
D10V12, multiclass
        clus
vv       AMP PEAK 10(10Q22.3) MUTATED AMP PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            7                             75
  CLUS_2                            5                             47
  CLUS_3                            5                             62
  CLUS_4                            3                             30
  CLUS_5                            1                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(11P15.5) MUTATED        4     20     24      5
  AMP PEAK 11(11P15.5) WILD-TYPE     39     42     45     36
D11V1, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                            4                             39
  CLUS_2                           20                             42
  CLUS_3                           24                             45
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(11P15.5) MUTATED        3     14     24     12
  AMP PEAK 11(11P15.5) WILD-TYPE     46     27     52     37
D11V2, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                            3                             46
  CLUS_2                           14                             27
  CLUS_3                           24                             52
  CLUS_4                           12                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(11P15.5) MUTATED       29     66     27     13
  AMP PEAK 11(11P15.5) WILD-TYPE    206    151     86     22
D11V3, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           29                            206
  CLUS_2                           66                            151
  CLUS_3                           27                             86
  CLUS_4                           13                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11P15.5) MUTATED       19     46     13
  AMP PEAK 11(11P15.5) WILD-TYPE     79    109    108
D11V4, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           19                             79
  CLUS_2                           46                            109
  CLUS_3                           13                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(11P15.5) MUTATED       22     51      9     20
  AMP PEAK 11(11P15.5) WILD-TYPE     75    127     30    117
D11V5, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           22                             75
  CLUS_2                           51                            127
  CLUS_3                            9                             30
  CLUS_4                           20                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11P15.5) MUTATED       12     76     14
  AMP PEAK 11(11P15.5) WILD-TYPE     40    226     83
D11V6, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           12                             40
  CLUS_2                           76                            226
  CLUS_3                           14                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(11P15.5) MUTATED       24     12     48     47
  AMP PEAK 11(11P15.5) WILD-TYPE    103    118     91    141
D11V7, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           24                            103
  CLUS_2                           12                            118
  CLUS_3                           48                             91
  CLUS_4                           47                            141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(11P15.5) MUTATED       11     19      2     22     18     12
  AMP PEAK 11(11P15.5) WILD-TYPE     53     88     43     43     48     84
                                vv
clus                             CLUS_7
  AMP PEAK 11(11P15.5) MUTATED       47
  AMP PEAK 11(11P15.5) WILD-TYPE     94
D11V8, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           19                             88
  CLUS_3                            2                             43
  CLUS_4                           22                             43
  CLUS_5                           18                             48
  CLUS_6                           12                             84
  CLUS_7                           47                             94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11P15.5) MUTATED       50     17     57
  AMP PEAK 11(11P15.5) WILD-TYPE    161     78    175
D11V9, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           50                            161
  CLUS_2                           17                             78
  CLUS_3                           57                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11P15.5) MUTATED       35     67     22
  AMP PEAK 11(11P15.5) WILD-TYPE    193     72    149
D11V10, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           35                            193
  CLUS_2                           67                             72
  CLUS_3                           22                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(11P15.5) MUTATED       30     10     22
  AMP PEAK 11(11P15.5) WILD-TYPE     70     99     63
D11V11, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           30                             70
  CLUS_2                           10                             99
  CLUS_3                           22                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(11P15.5) MUTATED       15      7     14     21      5
  AMP PEAK 11(11P15.5) WILD-TYPE     67     45     53     12     55
D11V12, multiclass
        clus
vv       AMP PEAK 11(11P15.5) MUTATED AMP PEAK 11(11P15.5) WILD-TYPE
  CLUS_1                           15                             67
  CLUS_2                            7                             45
  CLUS_3                           14                             53
  CLUS_4                           21                             12
  CLUS_5                            5                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P13.32) MUTATED       13     13     15     11
  AMP PEAK 12(12P13.32) WILD-TYPE     30     49     54     30
D12V1, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            13                              30
  CLUS_2                            13                              49
  CLUS_3                            15                              54
  CLUS_4                            11                              30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P13.32) MUTATED       14      7     20     11
  AMP PEAK 12(12P13.32) WILD-TYPE     35     34     56     38
D12V2, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            14                              35
  CLUS_2                             7                              34
  CLUS_3                            20                              56
  CLUS_4                            11                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P13.32) MUTATED       61     45     34      7
  AMP PEAK 12(12P13.32) WILD-TYPE    174    172     79     28
D12V3, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            61                             174
  CLUS_2                            45                             172
  CLUS_3                            34                              79
  CLUS_4                             7                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED       26     26     37
  AMP PEAK 12(12P13.32) WILD-TYPE     72    129     84
D12V4, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            26                              72
  CLUS_2                            26                             129
  CLUS_3                            37                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P13.32) MUTATED       24     40     13     30
  AMP PEAK 12(12P13.32) WILD-TYPE     73    138     26    107
D12V5, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            24                              73
  CLUS_2                            40                             138
  CLUS_3                            13                              26
  CLUS_4                            30                             107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED       16     72     19
  AMP PEAK 12(12P13.32) WILD-TYPE     36    230     78
D12V6, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            16                              36
  CLUS_2                            72                             230
  CLUS_3                            19                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12P13.32) MUTATED       31     37     31     45
  AMP PEAK 12(12P13.32) WILD-TYPE     96     93    108    143
D12V7, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            31                              96
  CLUS_2                            37                              93
  CLUS_3                            31                             108
  CLUS_4                            45                             143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(12P13.32) MUTATED       15     31     12     14     14     28
  AMP PEAK 12(12P13.32) WILD-TYPE     49     76     33     51     52     68
                                 vv
clus                              CLUS_7
  AMP PEAK 12(12P13.32) MUTATED       30
  AMP PEAK 12(12P13.32) WILD-TYPE    111
D12V8, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                            31                              76
  CLUS_3                            12                              33
  CLUS_4                            14                              51
  CLUS_5                            14                              52
  CLUS_6                            28                              68
  CLUS_7                            30                             111
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED       56     21     60
  AMP PEAK 12(12P13.32) WILD-TYPE    155     74    172
D12V9, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            56                             155
  CLUS_2                            21                              74
  CLUS_3                            60                             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED       58     35     44
  AMP PEAK 12(12P13.32) WILD-TYPE    170    104    127
D12V10, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            58                             170
  CLUS_2                            35                             104
  CLUS_3                            44                             127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12P13.32) MUTATED       24     33     19
  AMP PEAK 12(12P13.32) WILD-TYPE     76     76     66
D12V11, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            24                              76
  CLUS_2                            33                              76
  CLUS_3                            19                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(12P13.32) MUTATED       22     15     13      9     17
  AMP PEAK 12(12P13.32) WILD-TYPE     60     37     54     24     43
D12V12, multiclass
        clus
vv       AMP PEAK 12(12P13.32) MUTATED AMP PEAK 12(12P13.32) WILD-TYPE
  CLUS_1                            22                              60
  CLUS_2                            15                              37
  CLUS_3                            13                              54
  CLUS_4                             9                              24
  CLUS_5                            17                              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(13Q12.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.13) MUTATED       19     48     57     16
  AMP PEAK 13(13Q12.13) WILD-TYPE     24     14     12     25
D13V1, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            19                              24
  CLUS_2                            48                              14
  CLUS_3                            57                              12
  CLUS_4                            16                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.13) MUTATED       15     30     51     44
  AMP PEAK 13(13Q12.13) WILD-TYPE     34     11     25      5
D13V2, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            15                              34
  CLUS_2                            30                              11
  CLUS_3                            51                              25
  CLUS_4                            44                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.13) MUTATED       83    208     78     21
  AMP PEAK 13(13Q12.13) WILD-TYPE    152      9     35     14
D13V3, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            83                             152
  CLUS_2                           208                               9
  CLUS_3                            78                              35
  CLUS_4                            21                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED       57    132     58
  AMP PEAK 13(13Q12.13) WILD-TYPE     41     23     63
D13V4, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            57                              41
  CLUS_2                           132                              23
  CLUS_3                            58                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.13) MUTATED       65    125     26     73
  AMP PEAK 13(13Q12.13) WILD-TYPE     32     53     13     64
D13V5, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            65                              32
  CLUS_2                           125                              53
  CLUS_3                            26                              13
  CLUS_4                            73                              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED       36    203     50
  AMP PEAK 13(13Q12.13) WILD-TYPE     16     99     47
D13V6, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            36                              16
  CLUS_2                           203                              99
  CLUS_3                            50                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q12.13) MUTATED       80     60    111    130
  AMP PEAK 13(13Q12.13) WILD-TYPE     47     70     28     58
D13V7, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            80                              47
  CLUS_2                            60                              70
  CLUS_3                           111                              28
  CLUS_4                           130                              58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(13Q12.13) MUTATED       28     77     14     52     59     37
  AMP PEAK 13(13Q12.13) WILD-TYPE     36     30     31     13      7     59
                                 vv
clus                              CLUS_7
  AMP PEAK 13(13Q12.13) MUTATED      114
  AMP PEAK 13(13Q12.13) WILD-TYPE     27
D13V8, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            28                              36
  CLUS_2                            77                              30
  CLUS_3                            14                              31
  CLUS_4                            52                              13
  CLUS_5                            59                               7
  CLUS_6                            37                              59
  CLUS_7                           114                              27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED      159     52    141
  AMP PEAK 13(13Q12.13) WILD-TYPE     52     43     91
D13V9, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                           159                              52
  CLUS_2                            52                              43
  CLUS_3                           141                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED      151     95    106
  AMP PEAK 13(13Q12.13) WILD-TYPE     77     44     65
D13V10, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                           151                              77
  CLUS_2                            95                              44
  CLUS_3                           106                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q12.13) MUTATED       87     49     65
  AMP PEAK 13(13Q12.13) WILD-TYPE     13     60     20
D13V11, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            87                              13
  CLUS_2                            49                              60
  CLUS_3                            65                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q12.13) MUTATED       58     46     57     24     16
  AMP PEAK 13(13Q12.13) WILD-TYPE     24      6     10      9     44
D13V12, multiclass
        clus
vv       AMP PEAK 13(13Q12.13) MUTATED AMP PEAK 13(13Q12.13) WILD-TYPE
  CLUS_1                            58                              24
  CLUS_2                            46                               6
  CLUS_3                            57                              10
  CLUS_4                            24                               9
  CLUS_5                            16                              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(13Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.2) MUTATED       19     47     55     17
  AMP PEAK 14(13Q12.2) WILD-TYPE     24     15     14     24
D14V1, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           19                             24
  CLUS_2                           47                             15
  CLUS_3                           55                             14
  CLUS_4                           17                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.2) MUTATED       16     29     50     43
  AMP PEAK 14(13Q12.2) WILD-TYPE     33     12     26      6
D14V2, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           16                             33
  CLUS_2                           29                             12
  CLUS_3                           50                             26
  CLUS_4                           43                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.2) MUTATED       81    207     75     22
  AMP PEAK 14(13Q12.2) WILD-TYPE    154     10     38     13
D14V3, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           81                            154
  CLUS_2                          207                             10
  CLUS_3                           75                             38
  CLUS_4                           22                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED       57    132     56
  AMP PEAK 14(13Q12.2) WILD-TYPE     41     23     65
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           57                             41
  CLUS_2                          132                             23
  CLUS_3                           56                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.2) MUTATED       65    122     27     72
  AMP PEAK 14(13Q12.2) WILD-TYPE     32     56     12     65
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           65                             32
  CLUS_2                          122                             56
  CLUS_3                           27                             12
  CLUS_4                           72                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED       36    199     51
  AMP PEAK 14(13Q12.2) WILD-TYPE     16    103     46
D14V6, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           36                             16
  CLUS_2                          199                            103
  CLUS_3                           51                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(13Q12.2) MUTATED       79     59    110    128
  AMP PEAK 14(13Q12.2) WILD-TYPE     48     71     29     60
D14V7, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           79                             48
  CLUS_2                           59                             71
  CLUS_3                          110                             29
  CLUS_4                          128                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(13Q12.2) MUTATED       27     76     14     51     59     37
  AMP PEAK 14(13Q12.2) WILD-TYPE     37     31     31     14      7     59
                                vv
clus                             CLUS_7
  AMP PEAK 14(13Q12.2) MUTATED      112
  AMP PEAK 14(13Q12.2) WILD-TYPE     29
D14V8, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           27                             37
  CLUS_2                           76                             31
  CLUS_3                           14                             31
  CLUS_4                           51                             14
  CLUS_5                           59                              7
  CLUS_6                           37                             59
  CLUS_7                          112                             29
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED      156     52    139
  AMP PEAK 14(13Q12.2) WILD-TYPE     55     43     93
D14V9, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                          156                             55
  CLUS_2                           52                             43
  CLUS_3                          139                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED      150     91    106
  AMP PEAK 14(13Q12.2) WILD-TYPE     78     48     65
D14V10, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                          150                             78
  CLUS_2                           91                             48
  CLUS_3                          106                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(13Q12.2) MUTATED       85     48     65
  AMP PEAK 14(13Q12.2) WILD-TYPE     15     61     20
D14V11, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           85                             15
  CLUS_2                           48                             61
  CLUS_3                           65                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(13Q12.2) MUTATED       58     45     57     23     15
  AMP PEAK 14(13Q12.2) WILD-TYPE     24      7     10     10     45
D14V12, multiclass
        clus
vv       AMP PEAK 14(13Q12.2) MUTATED AMP PEAK 14(13Q12.2) WILD-TYPE
  CLUS_1                           58                             24
  CLUS_2                           45                              7
  CLUS_3                           57                             10
  CLUS_4                           23                             10
  CLUS_5                           15                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q22.1) MUTATED       18     48     54     17
  AMP PEAK 15(13Q22.1) WILD-TYPE     25     14     15     24
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           18                             25
  CLUS_2                           48                             14
  CLUS_3                           54                             15
  CLUS_4                           17                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q22.1) MUTATED       14     29     52     42
  AMP PEAK 15(13Q22.1) WILD-TYPE     35     12     24      7
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           29                             12
  CLUS_3                           52                             24
  CLUS_4                           42                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q22.1) MUTATED       86    205     76     20
  AMP PEAK 15(13Q22.1) WILD-TYPE    149     12     37     15
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           86                            149
  CLUS_2                          205                             12
  CLUS_3                           76                             37
  CLUS_4                           20                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       57    130     60
  AMP PEAK 15(13Q22.1) WILD-TYPE     41     25     61
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           57                             41
  CLUS_2                          130                             25
  CLUS_3                           60                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q22.1) MUTATED       63    122     26     75
  AMP PEAK 15(13Q22.1) WILD-TYPE     34     56     13     62
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           63                             34
  CLUS_2                          122                             56
  CLUS_3                           26                             13
  CLUS_4                           75                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       37    196     53
  AMP PEAK 15(13Q22.1) WILD-TYPE     15    106     44
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           37                             15
  CLUS_2                          196                            106
  CLUS_3                           53                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q22.1) MUTATED       79     59    111    129
  AMP PEAK 15(13Q22.1) WILD-TYPE     48     71     28     59
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           79                             48
  CLUS_2                           59                             71
  CLUS_3                          111                             28
  CLUS_4                          129                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(13Q22.1) MUTATED       30     76     15     51     56     36
  AMP PEAK 15(13Q22.1) WILD-TYPE     34     31     30     14     10     60
                                vv
clus                             CLUS_7
  AMP PEAK 15(13Q22.1) MUTATED      114
  AMP PEAK 15(13Q22.1) WILD-TYPE     27
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           30                             34
  CLUS_2                           76                             31
  CLUS_3                           15                             30
  CLUS_4                           51                             14
  CLUS_5                           56                             10
  CLUS_6                           36                             60
  CLUS_7                          114                             27
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED      157     54    140
  AMP PEAK 15(13Q22.1) WILD-TYPE     54     41     92
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                          157                             54
  CLUS_2                           54                             41
  CLUS_3                          140                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED      153     94    104
  AMP PEAK 15(13Q22.1) WILD-TYPE     75     45     67
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                          153                             75
  CLUS_2                           94                             45
  CLUS_3                          104                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q22.1) MUTATED       83     53     65
  AMP PEAK 15(13Q22.1) WILD-TYPE     17     56     20
D15V11, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           83                             17
  CLUS_2                           53                             56
  CLUS_3                           65                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q22.1) MUTATED       59     43     56     24     19
  AMP PEAK 15(13Q22.1) WILD-TYPE     23      9     11      9     41
D15V12, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           59                             23
  CLUS_2                           43                              9
  CLUS_3                           56                             11
  CLUS_4                           24                              9
  CLUS_5                           19                             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(15Q26.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.1) MUTATED        3      6      3      3
  AMP PEAK 16(15Q26.1) WILD-TYPE     40     56     66     38
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            3                             40
  CLUS_2                            6                             56
  CLUS_3                            3                             66
  CLUS_4                            3                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.1) MUTATED        5      2      4      4
  AMP PEAK 16(15Q26.1) WILD-TYPE     44     39     72     45
D16V2, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                            2                             39
  CLUS_3                            4                             72
  CLUS_4                            4                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.1) MUTATED       13     15     12      2
  AMP PEAK 16(15Q26.1) WILD-TYPE    222    202    101     33
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                           13                            222
  CLUS_2                           15                            202
  CLUS_3                           12                            101
  CLUS_4                            2                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED        9     11      7
  AMP PEAK 16(15Q26.1) WILD-TYPE     89    144    114
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            9                             89
  CLUS_2                           11                            144
  CLUS_3                            7                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.1) MUTATED       11      9      4     11
  AMP PEAK 16(15Q26.1) WILD-TYPE     86    169     35    126
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                           11                             86
  CLUS_2                            9                            169
  CLUS_3                            4                             35
  CLUS_4                           11                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED        6     23      6
  AMP PEAK 16(15Q26.1) WILD-TYPE     46    279     91
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                           23                            279
  CLUS_3                            6                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.1) MUTATED       12      6     10     13
  AMP PEAK 16(15Q26.1) WILD-TYPE    115    124    129    175
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                           12                            115
  CLUS_2                            6                            124
  CLUS_3                           10                            129
  CLUS_4                           13                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.1) MUTATED        7      3      3      8      2      7
  AMP PEAK 16(15Q26.1) WILD-TYPE     57    104     42     57     64     89
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.1) MUTATED       11
  AMP PEAK 16(15Q26.1) WILD-TYPE    130
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            7                             57
  CLUS_2                            3                            104
  CLUS_3                            3                             42
  CLUS_4                            8                             57
  CLUS_5                            2                             64
  CLUS_6                            7                             89
  CLUS_7                           11                            130
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED       17      5     16
  AMP PEAK 16(15Q26.1) WILD-TYPE    194     90    216
D16V9, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                           17                            194
  CLUS_2                            5                             90
  CLUS_3                           16                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED       17      8     13
  AMP PEAK 16(15Q26.1) WILD-TYPE    211    131    158
D16V10, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                           17                            211
  CLUS_2                            8                            131
  CLUS_3                           13                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.1) MUTATED        8      6      6
  AMP PEAK 16(15Q26.1) WILD-TYPE     92    103     79
D16V11, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            8                             92
  CLUS_2                            6                            103
  CLUS_3                            6                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.1) MUTATED        6      4      5      2      3
  AMP PEAK 16(15Q26.1) WILD-TYPE     76     48     62     31     57
D16V12, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                            6                             76
  CLUS_2                            4                             48
  CLUS_3                            5                             62
  CLUS_4                            2                             31
  CLUS_5                            3                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(16P11.2) MUTATED        9     24     25      6
  AMP PEAK 17(16P11.2) WILD-TYPE     34     38     44     35
D17V1, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            9                             34
  CLUS_2                           24                             38
  CLUS_3                           25                             44
  CLUS_4                            6                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(16P11.2) MUTATED        8     16     17     23
  AMP PEAK 17(16P11.2) WILD-TYPE     41     25     59     26
D17V2, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                            8                             41
  CLUS_2                           16                             25
  CLUS_3                           17                             59
  CLUS_4                           23                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(16P11.2) MUTATED       22    109     26      9
  AMP PEAK 17(16P11.2) WILD-TYPE    213    108     87     26
D17V3, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           22                            213
  CLUS_2                          109                            108
  CLUS_3                           26                             87
  CLUS_4                            9                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED       21     58     22
  AMP PEAK 17(16P11.2) WILD-TYPE     77     97     99
D17V4, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           21                             77
  CLUS_2                           58                             97
  CLUS_3                           22                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(16P11.2) MUTATED       36     44     14     29
  AMP PEAK 17(16P11.2) WILD-TYPE     61    134     25    108
D17V5, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           36                             61
  CLUS_2                           44                            134
  CLUS_3                           14                             25
  CLUS_4                           29                            108
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED       21     81     21
  AMP PEAK 17(16P11.2) WILD-TYPE     31    221     76
D17V6, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           21                             31
  CLUS_2                           81                            221
  CLUS_3                           21                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(16P11.2) MUTATED       33     18     53     59
  AMP PEAK 17(16P11.2) WILD-TYPE     94    112     86    129
D17V7, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           33                             94
  CLUS_2                           18                            112
  CLUS_3                           53                             86
  CLUS_4                           59                            129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(16P11.2) MUTATED       18     25      3     19     26     18
  AMP PEAK 17(16P11.2) WILD-TYPE     46     82     42     46     40     78
                                vv
clus                             CLUS_7
  AMP PEAK 17(16P11.2) MUTATED       54
  AMP PEAK 17(16P11.2) WILD-TYPE     87
D17V8, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           25                             82
  CLUS_3                            3                             42
  CLUS_4                           19                             46
  CLUS_5                           26                             40
  CLUS_6                           18                             78
  CLUS_7                           54                             87
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED       67     24     64
  AMP PEAK 17(16P11.2) WILD-TYPE    144     71    168
D17V9, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           67                            144
  CLUS_2                           24                             71
  CLUS_3                           64                            168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED       62     40     53
  AMP PEAK 17(16P11.2) WILD-TYPE    166     99    118
D17V10, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           62                            166
  CLUS_2                           40                             99
  CLUS_3                           53                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(16P11.2) MUTATED       34     18     34
  AMP PEAK 17(16P11.2) WILD-TYPE     66     91     51
D17V11, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           34                             66
  CLUS_2                           18                             91
  CLUS_3                           34                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(16P11.2) MUTATED       26     18     27     12      3
  AMP PEAK 17(16P11.2) WILD-TYPE     56     34     40     21     57
D17V12, multiclass
        clus
vv       AMP PEAK 17(16P11.2) MUTATED AMP PEAK 17(16P11.2) WILD-TYPE
  CLUS_1                           26                             56
  CLUS_2                           18                             34
  CLUS_3                           27                             40
  CLUS_4                           12                             21
  CLUS_5                            3                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q12) MUTATED        7     23     21      6
  AMP PEAK 18(17Q12) WILD-TYPE     36     39     48     35
D18V1, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          7                           36
  CLUS_2                         23                           39
  CLUS_3                         21                           48
  CLUS_4                          6                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q12) MUTATED        6     15     17     19
  AMP PEAK 18(17Q12) WILD-TYPE     43     26     59     30
D18V2, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          6                           43
  CLUS_2                         15                           26
  CLUS_3                         17                           59
  CLUS_4                         19                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q12) MUTATED       28     78     39      7
  AMP PEAK 18(17Q12) WILD-TYPE    207    139     74     28
D18V3, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         28                          207
  CLUS_2                         78                          139
  CLUS_3                         39                           74
  CLUS_4                          7                           28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED       18     55     21
  AMP PEAK 18(17Q12) WILD-TYPE     80    100    100
D18V4, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         18                           80
  CLUS_2                         55                          100
  CLUS_3                         21                          100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q12) MUTATED       32     38     10     30
  AMP PEAK 18(17Q12) WILD-TYPE     65    140     29    107
D18V5, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         32                           65
  CLUS_2                         38                          140
  CLUS_3                         10                           29
  CLUS_4                         30                          107
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED       19     71     20
  AMP PEAK 18(17Q12) WILD-TYPE     33    231     77
D18V6, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         19                           33
  CLUS_2                         71                          231
  CLUS_3                         20                           77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(17Q12) MUTATED       25     21     52     50
  AMP PEAK 18(17Q12) WILD-TYPE    102    109     87    138
D18V7, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         25                          102
  CLUS_2                         21                          109
  CLUS_3                         52                           87
  CLUS_4                         50                          138
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 18(17Q12) MUTATED        9     26      4     24     21     13     51
  AMP PEAK 18(17Q12) WILD-TYPE     55     81     41     41     45     83     90
D18V8, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          9                           55
  CLUS_2                         26                           81
  CLUS_3                          4                           41
  CLUS_4                         24                           41
  CLUS_5                         21                           45
  CLUS_6                         13                           83
  CLUS_7                         51                           90
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED       64     13     61
  AMP PEAK 18(17Q12) WILD-TYPE    147     82    171
D18V9, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         64                          147
  CLUS_2                         13                           82
  CLUS_3                         61                          171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED       53     48     37
  AMP PEAK 18(17Q12) WILD-TYPE    175     91    134
D18V10, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         53                          175
  CLUS_2                         48                           91
  CLUS_3                         37                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(17Q12) MUTATED       30     22     22
  AMP PEAK 18(17Q12) WILD-TYPE     70     87     63
D18V11, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         30                           70
  CLUS_2                         22                           87
  CLUS_3                         22                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(17Q12) MUTATED       20     16     19     12      7
  AMP PEAK 18(17Q12) WILD-TYPE     62     36     48     21     53
D18V12, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                         20                           62
  CLUS_2                         16                           36
  CLUS_3                         19                           48
  CLUS_4                         12                           21
  CLUS_5                          7                           53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.1) MUTATED        4     19     22      6
  AMP PEAK 19(17Q24.1) WILD-TYPE     39     43     47     35
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            4                             39
  CLUS_2                           19                             43
  CLUS_3                           22                             47
  CLUS_4                            6                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.1) MUTATED        5     13     15     18
  AMP PEAK 19(17Q24.1) WILD-TYPE     44     28     61     31
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                           13                             28
  CLUS_3                           15                             61
  CLUS_4                           18                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.1) MUTATED       23     78     31      6
  AMP PEAK 19(17Q24.1) WILD-TYPE    212    139     82     29
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           23                            212
  CLUS_2                           78                            139
  CLUS_3                           31                             82
  CLUS_4                            6                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED       14     52     21
  AMP PEAK 19(17Q24.1) WILD-TYPE     84    103    100
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           14                             84
  CLUS_2                           52                            103
  CLUS_3                           21                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.1) MUTATED       30     39      9     23
  AMP PEAK 19(17Q24.1) WILD-TYPE     67    139     30    114
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           30                             67
  CLUS_2                           39                            139
  CLUS_3                            9                             30
  CLUS_4                           23                            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED       19     66     16
  AMP PEAK 19(17Q24.1) WILD-TYPE     33    236     81
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           19                             33
  CLUS_2                           66                            236
  CLUS_3                           16                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(17Q24.1) MUTATED       21     19     48     45
  AMP PEAK 19(17Q24.1) WILD-TYPE    106    111     91    143
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           21                            106
  CLUS_2                           19                            111
  CLUS_3                           48                             91
  CLUS_4                           45                            143
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(17Q24.1) MUTATED        7     23      3     23     21     11
  AMP PEAK 19(17Q24.1) WILD-TYPE     57     84     42     42     45     85
                                vv
clus                             CLUS_7
  AMP PEAK 19(17Q24.1) MUTATED       45
  AMP PEAK 19(17Q24.1) WILD-TYPE     96
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                            7                             57
  CLUS_2                           23                             84
  CLUS_3                            3                             42
  CLUS_4                           23                             42
  CLUS_5                           21                             45
  CLUS_6                           11                             85
  CLUS_7                           45                             96
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED       61      8     53
  AMP PEAK 19(17Q24.1) WILD-TYPE    150     87    179
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           61                            150
  CLUS_2                            8                             87
  CLUS_3                           53                            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED       45     43     34
  AMP PEAK 19(17Q24.1) WILD-TYPE    183     96    137
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           45                            183
  CLUS_2                           43                             96
  CLUS_3                           34                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(17Q24.1) MUTATED       27     21     19
  AMP PEAK 19(17Q24.1) WILD-TYPE     73     88     66
D19V11, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           27                             73
  CLUS_2                           21                             88
  CLUS_3                           19                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(17Q24.1) MUTATED       21     14     16     12      4
  AMP PEAK 19(17Q24.1) WILD-TYPE     61     38     51     21     56
D19V12, multiclass
        clus
vv       AMP PEAK 19(17Q24.1) MUTATED AMP PEAK 19(17Q24.1) WILD-TYPE
  CLUS_1                           21                             61
  CLUS_2                           14                             38
  CLUS_3                           16                             51
  CLUS_4                           12                             21
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED        3     15     10      5
  AMP PEAK 20(19P13.2) WILD-TYPE     40     47     59     36
D20V1, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            3                             40
  CLUS_2                           15                             47
  CLUS_3                           10                             59
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED        2     12     10      9
  AMP PEAK 20(19P13.2) WILD-TYPE     47     29     66     40
D20V2, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            2                             47
  CLUS_2                           12                             29
  CLUS_3                           10                             66
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       17     60     21      7
  AMP PEAK 20(19P13.2) WILD-TYPE    218    157     92     28
D20V3, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           17                            218
  CLUS_2                           60                            157
  CLUS_3                           21                             92
  CLUS_4                            7                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       13     41     19
  AMP PEAK 20(19P13.2) WILD-TYPE     85    114    102
D20V4, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           13                             85
  CLUS_2                           41                            114
  CLUS_3                           19                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       22     32      7     20
  AMP PEAK 20(19P13.2) WILD-TYPE     75    146     32    117
D20V5, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           22                             75
  CLUS_2                           32                            146
  CLUS_3                            7                             32
  CLUS_4                           20                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED        8     58     15
  AMP PEAK 20(19P13.2) WILD-TYPE     44    244     82
D20V6, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            8                             44
  CLUS_2                           58                            244
  CLUS_3                           15                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(19P13.2) MUTATED       19     15     36     34
  AMP PEAK 20(19P13.2) WILD-TYPE    108    115    103    154
D20V7, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           19                            108
  CLUS_2                           15                            115
  CLUS_3                           36                            103
  CLUS_4                           34                            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(19P13.2) MUTATED        8     21      2     12     23      8
  AMP PEAK 20(19P13.2) WILD-TYPE     56     86     43     53     43     88
                                vv
clus                             CLUS_7
  AMP PEAK 20(19P13.2) MUTATED       30
  AMP PEAK 20(19P13.2) WILD-TYPE    111
D20V8, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                            8                             56
  CLUS_2                           21                             86
  CLUS_3                            2                             43
  CLUS_4                           12                             53
  CLUS_5                           23                             43
  CLUS_6                            8                             88
  CLUS_7                           30                            111
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       43     20     32
  AMP PEAK 20(19P13.2) WILD-TYPE    168     75    200
D20V9, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           43                            168
  CLUS_2                           20                             75
  CLUS_3                           32                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       42     21     32
  AMP PEAK 20(19P13.2) WILD-TYPE    186    118    139
D20V10, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           42                            186
  CLUS_2                           21                            118
  CLUS_3                           32                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(19P13.2) MUTATED       23     14     20
  AMP PEAK 20(19P13.2) WILD-TYPE     77     95     65
D20V11, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           23                             77
  CLUS_2                           14                             95
  CLUS_3                           20                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(19P13.2) MUTATED       14     12     18      9      4
  AMP PEAK 20(19P13.2) WILD-TYPE     68     40     49     24     56
D20V12, multiclass
        clus
vv       AMP PEAK 20(19P13.2) MUTATED AMP PEAK 20(19P13.2) WILD-TYPE
  CLUS_1                           14                             68
  CLUS_2                           12                             40
  CLUS_3                           18                             49
  CLUS_4                            9                             24
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED        5     21     13      6
  AMP PEAK 21(19Q12) WILD-TYPE     38     41     56     35
D21V1, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                          5                           38
  CLUS_2                         21                           41
  CLUS_3                         13                           56
  CLUS_4                          6                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED        4     17     13     11
  AMP PEAK 21(19Q12) WILD-TYPE     45     24     63     38
D21V2, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                          4                           45
  CLUS_2                         17                           24
  CLUS_3                         13                           63
  CLUS_4                         11                           38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       25     75     24      8
  AMP PEAK 21(19Q12) WILD-TYPE    210    142     89     27
D21V3, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         25                          210
  CLUS_2                         75                          142
  CLUS_3                         24                           89
  CLUS_4                          8                           27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       20     43     25
  AMP PEAK 21(19Q12) WILD-TYPE     78    112     96
D21V4, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         20                           78
  CLUS_2                         43                          112
  CLUS_3                         25                           96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       28     43      9     21
  AMP PEAK 21(19Q12) WILD-TYPE     69    135     30    116
D21V5, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         28                           69
  CLUS_2                         43                          135
  CLUS_3                          9                           30
  CLUS_4                         21                          116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       12     72     17
  AMP PEAK 21(19Q12) WILD-TYPE     40    230     80
D21V6, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         12                           40
  CLUS_2                         72                          230
  CLUS_3                         17                           80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19Q12) MUTATED       27     23     42     37
  AMP PEAK 21(19Q12) WILD-TYPE    100    107     97    151
D21V7, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         27                          100
  CLUS_2                         23                          107
  CLUS_3                         42                           97
  CLUS_4                         37                          151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 21(19Q12) MUTATED       12     29      2     15     23     14     34
  AMP PEAK 21(19Q12) WILD-TYPE     52     78     43     50     43     82    107
D21V8, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         12                           52
  CLUS_2                         29                           78
  CLUS_3                          2                           43
  CLUS_4                         15                           50
  CLUS_5                         23                           43
  CLUS_6                         14                           82
  CLUS_7                         34                          107
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       53     22     42
  AMP PEAK 21(19Q12) WILD-TYPE    158     73    190
D21V9, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         53                          158
  CLUS_2                         22                           73
  CLUS_3                         42                          190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       51     28     38
  AMP PEAK 21(19Q12) WILD-TYPE    177    111    133
D21V10, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         51                          177
  CLUS_2                         28                          111
  CLUS_3                         38                          133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19Q12) MUTATED       26     19     22
  AMP PEAK 21(19Q12) WILD-TYPE     74     90     63
D21V11, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         26                           74
  CLUS_2                         19                           90
  CLUS_3                         22                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19Q12) MUTATED       19     14     19     10      5
  AMP PEAK 21(19Q12) WILD-TYPE     63     38     48     23     55
D21V12, multiclass
        clus
vv       AMP PEAK 21(19Q12) MUTATED AMP PEAK 21(19Q12) WILD-TYPE
  CLUS_1                         19                           63
  CLUS_2                         14                           38
  CLUS_3                         19                           48
  CLUS_4                         10                           23
  CLUS_5                          5                           55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20P11.23) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.23) MUTATED       15     37     43     15
  AMP PEAK 22(20P11.23) WILD-TYPE     28     25     26     26
D22V1, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            15                              28
  CLUS_2                            37                              25
  CLUS_3                            43                              26
  CLUS_4                            15                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.23) MUTATED       14     24     45     27
  AMP PEAK 22(20P11.23) WILD-TYPE     35     17     31     22
D22V2, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            14                              35
  CLUS_2                            24                              17
  CLUS_3                            45                              31
  CLUS_4                            27                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.23) MUTATED       82    134     64     35
  AMP PEAK 22(20P11.23) WILD-TYPE    153     83     49      0
D22V3, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            82                             153
  CLUS_2                           134                              83
  CLUS_3                            64                              49
  CLUS_4                            35                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.23) MUTATED       49     97     54
  AMP PEAK 22(20P11.23) WILD-TYPE     49     58     67
D22V4, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            49                              49
  CLUS_2                            97                              58
  CLUS_3                            54                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.23) MUTATED       58     94     22     51
  AMP PEAK 22(20P11.23) WILD-TYPE     39     84     17     86
D22V5, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            58                              39
  CLUS_2                            94                              84
  CLUS_3                            22                              17
  CLUS_4                            51                              86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.23) MUTATED       29    158     38
  AMP PEAK 22(20P11.23) WILD-TYPE     23    144     59
D22V6, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            29                              23
  CLUS_2                           158                             144
  CLUS_3                            38                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20P11.23) MUTATED       63     49     90    104
  AMP PEAK 22(20P11.23) WILD-TYPE     64     81     49     84
D22V7, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            63                              64
  CLUS_2                            49                              81
  CLUS_3                            90                              49
  CLUS_4                           104                              84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(20P11.23) MUTATED       27     60     12     43     41     36
  AMP PEAK 22(20P11.23) WILD-TYPE     37     47     33     22     25     60
                                 vv
clus                              CLUS_7
  AMP PEAK 22(20P11.23) MUTATED       87
  AMP PEAK 22(20P11.23) WILD-TYPE     54
D22V8, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            27                              37
  CLUS_2                            60                              47
  CLUS_3                            12                              33
  CLUS_4                            43                              22
  CLUS_5                            41                              25
  CLUS_6                            36                              60
  CLUS_7                            87                              54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.23) MUTATED      120     48    112
  AMP PEAK 22(20P11.23) WILD-TYPE     91     47    120
D22V9, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                           120                              91
  CLUS_2                            48                              47
  CLUS_3                           112                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.23) MUTATED      113     86     81
  AMP PEAK 22(20P11.23) WILD-TYPE    115     53     90
D22V10, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                           113                             115
  CLUS_2                            86                              53
  CLUS_3                            81                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20P11.23) MUTATED       67     40     50
  AMP PEAK 22(20P11.23) WILD-TYPE     33     69     35
D22V11, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            67                              33
  CLUS_2                            40                              69
  CLUS_3                            50                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20P11.23) MUTATED       45     34     40     22     16
  AMP PEAK 22(20P11.23) WILD-TYPE     37     18     27     11     44
D22V12, multiclass
        clus
vv       AMP PEAK 22(20P11.23) MUTATED AMP PEAK 22(20P11.23) WILD-TYPE
  CLUS_1                            45                              37
  CLUS_2                            34                              18
  CLUS_3                            40                              27
  CLUS_4                            22                              11
  CLUS_5                            16                              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(20P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P11.21) MUTATED       16     43     49     17
  AMP PEAK 23(20P11.21) WILD-TYPE     27     19     20     24
D23V1, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            16                              27
  CLUS_2                            43                              19
  CLUS_3                            49                              20
  CLUS_4                            17                              24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P11.21) MUTATED       14     27     48     36
  AMP PEAK 23(20P11.21) WILD-TYPE     35     14     28     13
D23V2, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            14                              35
  CLUS_2                            27                              14
  CLUS_3                            48                              28
  CLUS_4                            36                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P11.21) MUTATED       85    164     70     35
  AMP PEAK 23(20P11.21) WILD-TYPE    150     53     43      0
D23V3, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            85                             150
  CLUS_2                           164                              53
  CLUS_3                            70                              43
  CLUS_4                            35                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P11.21) MUTATED       50    116     58
  AMP PEAK 23(20P11.21) WILD-TYPE     48     39     63
D23V4, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            50                              48
  CLUS_2                           116                              39
  CLUS_3                            58                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P11.21) MUTATED       66    105     25     63
  AMP PEAK 23(20P11.21) WILD-TYPE     31     73     14     74
D23V5, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            66                              31
  CLUS_2                           105                              73
  CLUS_3                            25                              14
  CLUS_4                            63                              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P11.21) MUTATED       34    177     48
  AMP PEAK 23(20P11.21) WILD-TYPE     18    125     49
D23V6, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            34                              18
  CLUS_2                           177                             125
  CLUS_3                            48                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(20P11.21) MUTATED       73     51    106    114
  AMP PEAK 23(20P11.21) WILD-TYPE     54     79     33     74
D23V7, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            73                              54
  CLUS_2                            51                              79
  CLUS_3                           106                              33
  CLUS_4                           114                              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(20P11.21) MUTATED       30     68     11     49     49     36
  AMP PEAK 23(20P11.21) WILD-TYPE     34     39     34     16     17     60
                                 vv
clus                              CLUS_7
  AMP PEAK 23(20P11.21) MUTATED      101
  AMP PEAK 23(20P11.21) WILD-TYPE     40
D23V8, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            30                              34
  CLUS_2                            68                              39
  CLUS_3                            11                              34
  CLUS_4                            49                              16
  CLUS_5                            49                              17
  CLUS_6                            36                              60
  CLUS_7                           101                              40
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P11.21) MUTATED      139     50    126
  AMP PEAK 23(20P11.21) WILD-TYPE     72     45    106
D23V9, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                           139                              72
  CLUS_2                            50                              45
  CLUS_3                           126                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P11.21) MUTATED      130     96     89
  AMP PEAK 23(20P11.21) WILD-TYPE     98     43     82
D23V10, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                           130                              98
  CLUS_2                            96                              43
  CLUS_3                            89                              82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(20P11.21) MUTATED       76     44     58
  AMP PEAK 23(20P11.21) WILD-TYPE     24     65     27
D23V11, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            76                              24
  CLUS_2                            44                              65
  CLUS_3                            58                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(20P11.21) MUTATED       51     41     45     26     15
  AMP PEAK 23(20P11.21) WILD-TYPE     31     11     22      7     45
D23V12, multiclass
        clus
vv       AMP PEAK 23(20P11.21) MUTATED AMP PEAK 23(20P11.21) WILD-TYPE
  CLUS_1                            51                              31
  CLUS_2                            41                              11
  CLUS_3                            45                              22
  CLUS_4                            26                               7
  CLUS_5                            15                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       18     60     63     23
  AMP PEAK 24(20Q11.21) WILD-TYPE     25      2      6     18
D24V1, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            18                              25
  CLUS_2                            60                               2
  CLUS_3                            63                               6
  CLUS_4                            23                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       15     39     62     48
  AMP PEAK 24(20Q11.21) WILD-TYPE     34      2     14      1
D24V2, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            15                              34
  CLUS_2                            39                               2
  CLUS_3                            62                              14
  CLUS_4                            48                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED      112    215     95     35
  AMP PEAK 24(20Q11.21) WILD-TYPE    123      2     18      0
D24V3, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                           112                             123
  CLUS_2                           215                               2
  CLUS_3                            95                              18
  CLUS_4                            35                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       68    151     68
  AMP PEAK 24(20Q11.21) WILD-TYPE     30      4     53
D24V4, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            68                              30
  CLUS_2                           151                               4
  CLUS_3                            68                              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       79    142     32     89
  AMP PEAK 24(20Q11.21) WILD-TYPE     18     36      7     48
D24V5, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            79                              18
  CLUS_2                           142                              36
  CLUS_3                            32                               7
  CLUS_4                            89                              48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       45    233     64
  AMP PEAK 24(20Q11.21) WILD-TYPE      7     69     33
D24V6, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            45                               7
  CLUS_2                           233                              69
  CLUS_3                            64                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(20Q11.21) MUTATED       94     68    136    147
  AMP PEAK 24(20Q11.21) WILD-TYPE     33     62      3     41
D24V7, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            94                              33
  CLUS_2                            68                              62
  CLUS_3                           136                               3
  CLUS_4                           147                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(20Q11.21) MUTATED       39     86     13     62     65     45
  AMP PEAK 24(20Q11.21) WILD-TYPE     25     21     32      3      1     51
                                 vv
clus                              CLUS_7
  AMP PEAK 24(20Q11.21) MUTATED      135
  AMP PEAK 24(20Q11.21) WILD-TYPE      6
D24V8, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            39                              25
  CLUS_2                            86                              21
  CLUS_3                            13                              32
  CLUS_4                            62                               3
  CLUS_5                            65                               1
  CLUS_6                            45                              51
  CLUS_7                           135                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED      174     68    167
  AMP PEAK 24(20Q11.21) WILD-TYPE     37     27     65
D24V9, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                           174                              37
  CLUS_2                            68                              27
  CLUS_3                           167                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED      167    122    120
  AMP PEAK 24(20Q11.21) WILD-TYPE     61     17     51
D24V10, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                           167                              61
  CLUS_2                           122                              17
  CLUS_3                           120                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(20Q11.21) MUTATED       94     59     75
  AMP PEAK 24(20Q11.21) WILD-TYPE      6     50     10
D24V11, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            94                               6
  CLUS_2                            59                              50
  CLUS_3                            75                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(20Q11.21) MUTATED       69     48     62     31     18
  AMP PEAK 24(20Q11.21) WILD-TYPE     13      4      5      2     42
D24V12, multiclass
        clus
vv       AMP PEAK 24(20Q11.21) MUTATED AMP PEAK 24(20Q11.21) WILD-TYPE
  CLUS_1                            69                              13
  CLUS_2                            48                               4
  CLUS_3                            62                               5
  CLUS_4                            31                               2
  CLUS_5                            18                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(20Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q12) MUTATED       17     60     63     22
  AMP PEAK 25(20Q12) WILD-TYPE     26      2      6     19
D25V1, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         17                           26
  CLUS_2                         60                            2
  CLUS_3                         63                            6
  CLUS_4                         22                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q12) MUTATED       14     39     61     48
  AMP PEAK 25(20Q12) WILD-TYPE     35      2     15      1
D25V2, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         14                           35
  CLUS_2                         39                            2
  CLUS_3                         61                           15
  CLUS_4                         48                            1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q12) MUTATED      112    215     97     35
  AMP PEAK 25(20Q12) WILD-TYPE    123      2     16      0
D25V3, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                        112                          123
  CLUS_2                        215                            2
  CLUS_3                         97                           16
  CLUS_4                         35                            0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q12) MUTATED       69    151     71
  AMP PEAK 25(20Q12) WILD-TYPE     29      4     50
D25V4, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         69                           29
  CLUS_2                        151                            4
  CLUS_3                         71                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q12) MUTATED       79    143     31     90
  AMP PEAK 25(20Q12) WILD-TYPE     18     35      8     47
D25V5, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         79                           18
  CLUS_2                        143                           35
  CLUS_3                         31                            8
  CLUS_4                         90                           47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q12) MUTATED       46    233     64
  AMP PEAK 25(20Q12) WILD-TYPE      6     69     33
D25V6, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         46                            6
  CLUS_2                        233                           69
  CLUS_3                         64                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(20Q12) MUTATED       96     69    136    146
  AMP PEAK 25(20Q12) WILD-TYPE     31     61      3     42
D25V7, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         96                           31
  CLUS_2                         69                           61
  CLUS_3                        136                            3
  CLUS_4                        146                           42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 25(20Q12) MUTATED       41     87     14     62     65     43    135
  AMP PEAK 25(20Q12) WILD-TYPE     23     20     31      3      1     53      6
D25V8, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         41                           23
  CLUS_2                         87                           20
  CLUS_3                         14                           31
  CLUS_4                         62                            3
  CLUS_5                         65                            1
  CLUS_6                         43                           53
  CLUS_7                        135                            6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q12) MUTATED      176     69    166
  AMP PEAK 25(20Q12) WILD-TYPE     35     26     66
D25V9, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                        176                           35
  CLUS_2                         69                           26
  CLUS_3                        166                           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q12) MUTATED      169    123    119
  AMP PEAK 25(20Q12) WILD-TYPE     59     16     52
D25V10, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                        169                           59
  CLUS_2                        123                           16
  CLUS_3                        119                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(20Q12) MUTATED       95     60     76
  AMP PEAK 25(20Q12) WILD-TYPE      5     49      9
D25V11, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         95                            5
  CLUS_2                         60                           49
  CLUS_3                         76                            9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(20Q12) MUTATED       69     49     63     31     19
  AMP PEAK 25(20Q12) WILD-TYPE     13      3      4      2     41
D25V12, multiclass
        clus
vv       AMP PEAK 25(20Q12) MUTATED AMP PEAK 25(20Q12) WILD-TYPE
  CLUS_1                         69                           13
  CLUS_2                         49                            3
  CLUS_3                         63                            4
  CLUS_4                         31                            2
  CLUS_5                         19                           41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(20Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q13.31) MUTATED       18     60     64     24
  AMP PEAK 26(20Q13.31) WILD-TYPE     25      2      5     17
D26V1, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            18                              25
  CLUS_2                            60                               2
  CLUS_3                            64                               5
  CLUS_4                            24                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q13.31) MUTATED       15     39     64     48
  AMP PEAK 26(20Q13.31) WILD-TYPE     34      2     12      1
D26V2, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            15                              34
  CLUS_2                            39                               2
  CLUS_3                            64                              12
  CLUS_4                            48                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q13.31) MUTATED      113    214     99     35
  AMP PEAK 26(20Q13.31) WILD-TYPE    122      3     14      0
D26V3, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                           113                             122
  CLUS_2                           214                               3
  CLUS_3                            99                              14
  CLUS_4                            35                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q13.31) MUTATED       68    150     71
  AMP PEAK 26(20Q13.31) WILD-TYPE     30      5     50
D26V4, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            68                              30
  CLUS_2                           150                               5
  CLUS_3                            71                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q13.31) MUTATED       79    143     32     91
  AMP PEAK 26(20Q13.31) WILD-TYPE     18     35      7     46
D26V5, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            79                              18
  CLUS_2                           143                              35
  CLUS_3                            32                               7
  CLUS_4                            91                              46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q13.31) MUTATED       46    235     64
  AMP PEAK 26(20Q13.31) WILD-TYPE      6     67     33
D26V6, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            46                               6
  CLUS_2                           235                              67
  CLUS_3                            64                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(20Q13.31) MUTATED       96     71    135    148
  AMP PEAK 26(20Q13.31) WILD-TYPE     31     59      4     40
D26V7, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            96                              31
  CLUS_2                            71                              59
  CLUS_3                           135                               4
  CLUS_4                           148                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(20Q13.31) MUTATED       41     88     13     61     65     46
  AMP PEAK 26(20Q13.31) WILD-TYPE     23     19     32      4      1     50
                                 vv
clus                              CLUS_7
  AMP PEAK 26(20Q13.31) MUTATED      136
  AMP PEAK 26(20Q13.31) WILD-TYPE      5
D26V8, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            41                              23
  CLUS_2                            88                              19
  CLUS_3                            13                              32
  CLUS_4                            61                               4
  CLUS_5                            65                               1
  CLUS_6                            46                              50
  CLUS_7                           136                               5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q13.31) MUTATED      176     69    169
  AMP PEAK 26(20Q13.31) WILD-TYPE     35     26     63
D26V9, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                           176                              35
  CLUS_2                            69                              26
  CLUS_3                           169                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q13.31) MUTATED      170    123    121
  AMP PEAK 26(20Q13.31) WILD-TYPE     58     16     50
D26V10, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                           170                              58
  CLUS_2                           123                              16
  CLUS_3                           121                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(20Q13.31) MUTATED       94     61     76
  AMP PEAK 26(20Q13.31) WILD-TYPE      6     48      9
D26V11, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            94                               6
  CLUS_2                            61                              48
  CLUS_3                            76                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(20Q13.31) MUTATED       70     48     63     31     19
  AMP PEAK 26(20Q13.31) WILD-TYPE     12      4      4      2     41
D26V12, multiclass
        clus
vv       AMP PEAK 26(20Q13.31) MUTATED AMP PEAK 26(20Q13.31) WILD-TYPE
  CLUS_1                            70                              12
  CLUS_2                            48                               4
  CLUS_3                            63                               4
  CLUS_4                            31                               2
  CLUS_5                            19                              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ28) MUTATED        7     15     10     11
  AMP PEAK 27(XQ28) WILD-TYPE     36     47     59     30
D27V1, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                         7                          36
  CLUS_2                        15                          47
  CLUS_3                        10                          59
  CLUS_4                        11                          30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ28) MUTATED        7      8     19      9
  AMP PEAK 27(XQ28) WILD-TYPE     42     33     57     40
D27V2, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                         7                          42
  CLUS_2                         8                          33
  CLUS_3                        19                          57
  CLUS_4                         9                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ28) MUTATED       24     54     36      7
  AMP PEAK 27(XQ28) WILD-TYPE    211    163     77     28
D27V3, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        24                         211
  CLUS_2                        54                         163
  CLUS_3                        36                          77
  CLUS_4                         7                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ28) MUTATED       14     35     25
  AMP PEAK 27(XQ28) WILD-TYPE     84    120     96
D27V4, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        14                          84
  CLUS_2                        35                         120
  CLUS_3                        25                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ28) MUTATED       24     45     10     15
  AMP PEAK 27(XQ28) WILD-TYPE     73    133     29    122
D27V5, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        24                          73
  CLUS_2                        45                         133
  CLUS_3                        10                          29
  CLUS_4                        15                         122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ28) MUTATED       11     72     11
  AMP PEAK 27(XQ28) WILD-TYPE     41    230     86
D27V6, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        11                          41
  CLUS_2                        72                         230
  CLUS_3                        11                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(XQ28) MUTATED       25     22     31     40
  AMP PEAK 27(XQ28) WILD-TYPE    102    108    108    148
D27V7, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        25                         102
  CLUS_2                        22                         108
  CLUS_3                        31                         108
  CLUS_4                        40                         148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 27(XQ28) MUTATED       12     23      6     15     17     18     27
  AMP PEAK 27(XQ28) WILD-TYPE     52     84     39     50     49     78    114
D27V8, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        12                          52
  CLUS_2                        23                          84
  CLUS_3                         6                          39
  CLUS_4                        15                          50
  CLUS_5                        17                          49
  CLUS_6                        18                          78
  CLUS_7                        27                         114
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ28) MUTATED       45     18     47
  AMP PEAK 27(XQ28) WILD-TYPE    166     77    185
D27V9, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        45                         166
  CLUS_2                        18                          77
  CLUS_3                        47                         185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ28) MUTATED       47     30     33
  AMP PEAK 27(XQ28) WILD-TYPE    181    109    138
D27V10, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        47                         181
  CLUS_2                        30                         109
  CLUS_3                        33                         138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ28) MUTATED       24     15     21
  AMP PEAK 27(XQ28) WILD-TYPE     76     94     64
D27V11, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        24                          76
  CLUS_2                        15                          94
  CLUS_3                        21                          64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ28) MUTATED       14     15     17      7      7
  AMP PEAK 27(XQ28) WILD-TYPE     68     37     50     26     53
D27V12, multiclass
        clus
vv       AMP PEAK 27(XQ28) MUTATED AMP PEAK 27(XQ28) WILD-TYPE
  CLUS_1                        14                          68
  CLUS_2                        15                          37
  CLUS_3                        17                          50
  CLUS_4                         7                          26
  CLUS_5                         7                          53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  1(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       14     36     36      7
  DEL PEAK  1(1P36.11) WILD-TYPE     29     26     33     34
D28V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                           36                             26
  CLUS_3                           36                             33
  CLUS_4                            7                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       12     27     29     25
  DEL PEAK  1(1P36.11) WILD-TYPE     37     14     47     24
D28V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           12                             37
  CLUS_2                           27                             14
  CLUS_3                           29                             47
  CLUS_4                           25                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       49    124     39     26
  DEL PEAK  1(1P36.11) WILD-TYPE    186     93     74      9
D28V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           49                            186
  CLUS_2                          124                             93
  CLUS_3                           39                             74
  CLUS_4                           26                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       34     81     29
  DEL PEAK  1(1P36.11) WILD-TYPE     64     74     92
D28V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           34                             64
  CLUS_2                           81                             74
  CLUS_3                           29                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       38     80     15     43
  DEL PEAK  1(1P36.11) WILD-TYPE     59     98     24     94
D28V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           38                             59
  CLUS_2                           80                             98
  CLUS_3                           15                             24
  CLUS_4                           43                             94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       18    128     30
  DEL PEAK  1(1P36.11) WILD-TYPE     34    174     67
D28V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           18                             34
  CLUS_2                          128                            174
  CLUS_3                           30                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.11) MUTATED       52     26     71     82
  DEL PEAK  1(1P36.11) WILD-TYPE     75    104     68    106
D28V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           52                             75
  CLUS_2                           26                            104
  CLUS_3                           71                             68
  CLUS_4                           82                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.11) MUTATED       17     36      6     33     37     27
  DEL PEAK  1(1P36.11) WILD-TYPE     47     71     39     32     29     69
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.11) MUTATED       75
  DEL PEAK  1(1P36.11) WILD-TYPE     66
D28V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           17                             47
  CLUS_2                           36                             71
  CLUS_3                            6                             39
  CLUS_4                           33                             32
  CLUS_5                           37                             29
  CLUS_6                           27                             69
  CLUS_7                           75                             66
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       88     32     94
  DEL PEAK  1(1P36.11) WILD-TYPE    123     63    138
D28V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           88                            123
  CLUS_2                           32                             63
  CLUS_3                           94                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       79     70     65
  DEL PEAK  1(1P36.11) WILD-TYPE    149     69    106
D28V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           79                            149
  CLUS_2                           70                             69
  CLUS_3                           65                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.11) MUTATED       42     29     42
  DEL PEAK  1(1P36.11) WILD-TYPE     58     80     43
D28V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           42                             58
  CLUS_2                           29                             80
  CLUS_3                           42                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.11) MUTATED       31     22     29     20     11
  DEL PEAK  1(1P36.11) WILD-TYPE     51     30     38     13     49
D28V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           31                             51
  CLUS_2                           22                             30
  CLUS_3                           29                             38
  CLUS_4                           20                             13
  CLUS_5                           11                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  2(1P33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       12     21     23      4
  DEL PEAK  2(1P33) WILD-TYPE     31     41     46     37
D29V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          31
  CLUS_2                        21                          41
  CLUS_3                        23                          46
  CLUS_4                         4                          37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       10     17     17     16
  DEL PEAK  2(1P33) WILD-TYPE     39     24     59     33
D29V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          39
  CLUS_2                        17                          24
  CLUS_3                        17                          59
  CLUS_4                        16                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       34     95     19     23
  DEL PEAK  2(1P33) WILD-TYPE    201    122     94     12
D29V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        34                         201
  CLUS_2                        95                         122
  CLUS_3                        19                          94
  CLUS_4                        23                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       29     60     21
  DEL PEAK  2(1P33) WILD-TYPE     69     95    100
D29V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        29                          69
  CLUS_2                        60                          95
  CLUS_3                        21                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       25     55     11     38
  DEL PEAK  2(1P33) WILD-TYPE     72    123     28     99
D29V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        25                          72
  CLUS_2                        55                         123
  CLUS_3                        11                          28
  CLUS_4                        38                          99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       12     91     26
  DEL PEAK  2(1P33) WILD-TYPE     40    211     71
D29V6, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          40
  CLUS_2                        91                         211
  CLUS_3                        26                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P33) MUTATED       37     20     55     52
  DEL PEAK  2(1P33) WILD-TYPE     90    110     84    136
D29V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        37                          90
  CLUS_2                        20                         110
  CLUS_3                        55                          84
  CLUS_4                        52                         136
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  2(1P33) MUTATED       12     27      8     25     25     19     48
  DEL PEAK  2(1P33) WILD-TYPE     52     80     37     40     41     77     93
D29V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          52
  CLUS_2                        27                          80
  CLUS_3                         8                          37
  CLUS_4                        25                          40
  CLUS_5                        25                          41
  CLUS_6                        19                          77
  CLUS_7                        48                          93
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       66     26     60
  DEL PEAK  2(1P33) WILD-TYPE    145     69    172
D29V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        66                         145
  CLUS_2                        26                          69
  CLUS_3                        60                         172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       58     49     45
  DEL PEAK  2(1P33) WILD-TYPE    170     90    126
D29V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        58                         170
  CLUS_2                        49                          90
  CLUS_3                        45                         126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P33) MUTATED       32     20     35
  DEL PEAK  2(1P33) WILD-TYPE     68     89     50
D29V11, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        32                          68
  CLUS_2                        20                          89
  CLUS_3                        35                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P33) MUTATED       21     17     21     19      9
  DEL PEAK  2(1P33) WILD-TYPE     61     35     46     14     51
D29V12, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        21                          61
  CLUS_2                        17                          35
  CLUS_3                        21                          46
  CLUS_4                        19                          14
  CLUS_5                         9                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  3(1P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       12     19     20      6
  DEL PEAK  3(1P13.2) WILD-TYPE     31     43     49     35
D30V1, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          19                            43
  CLUS_3                          20                            49
  CLUS_4                           6                            35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       10     14     18     15
  DEL PEAK  3(1P13.2) WILD-TYPE     39     27     58     34
D30V2, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            39
  CLUS_2                          14                            27
  CLUS_3                          18                            58
  CLUS_4                          15                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       36     94     23     18
  DEL PEAK  3(1P13.2) WILD-TYPE    199    123     90     17
D30V3, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          36                           199
  CLUS_2                          94                           123
  CLUS_3                          23                            90
  CLUS_4                          18                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       28     58     26
  DEL PEAK  3(1P13.2) WILD-TYPE     70     97     95
D30V4, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          28                            70
  CLUS_2                          58                            97
  CLUS_3                          26                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       30     54     11     35
  DEL PEAK  3(1P13.2) WILD-TYPE     67    124     28    102
D30V5, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          30                            67
  CLUS_2                          54                           124
  CLUS_3                          11                            28
  CLUS_4                          35                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       13     89     28
  DEL PEAK  3(1P13.2) WILD-TYPE     39    213     69
D30V6, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          13                            39
  CLUS_2                          89                           213
  CLUS_3                          28                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P13.2) MUTATED       41     20     49     54
  DEL PEAK  3(1P13.2) WILD-TYPE     86    110     90    134
D30V7, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          41                            86
  CLUS_2                          20                           110
  CLUS_3                          49                            90
  CLUS_4                          54                           134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P13.2) MUTATED       13     23      7     26     28     20
  DEL PEAK  3(1P13.2) WILD-TYPE     51     84     38     39     38     76
                               vv
clus                            CLUS_7
  DEL PEAK  3(1P13.2) MUTATED       47
  DEL PEAK  3(1P13.2) WILD-TYPE     94
D30V8, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          13                            51
  CLUS_2                          23                            84
  CLUS_3                           7                            38
  CLUS_4                          26                            39
  CLUS_5                          28                            38
  CLUS_6                          20                            76
  CLUS_7                          47                            94
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       64     26     59
  DEL PEAK  3(1P13.2) WILD-TYPE    147     69    173
D30V9, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          64                           147
  CLUS_2                          26                            69
  CLUS_3                          59                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       58     48     43
  DEL PEAK  3(1P13.2) WILD-TYPE    170     91    128
D30V10, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          58                           170
  CLUS_2                          48                            91
  CLUS_3                          43                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P13.2) MUTATED       30     21     33
  DEL PEAK  3(1P13.2) WILD-TYPE     70     88     52
D30V11, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          30                            70
  CLUS_2                          21                            88
  CLUS_3                          33                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1P13.2) MUTATED       24     15     22     15      8
  DEL PEAK  3(1P13.2) WILD-TYPE     58     37     45     18     52
D30V12, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          24                            58
  CLUS_2                          15                            37
  CLUS_3                          22                            45
  CLUS_4                          15                            18
  CLUS_5                           8                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  4(2P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        3      4      5      2
  DEL PEAK  4(2P12) WILD-TYPE     40     58     64     39
D31V1, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         3                          40
  CLUS_2                         4                          58
  CLUS_3                         5                          64
  CLUS_4                         2                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        4      2      5      3
  DEL PEAK  4(2P12) WILD-TYPE     45     39     71     46
D31V2, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         4                          45
  CLUS_2                         2                          39
  CLUS_3                         5                          71
  CLUS_4                         3                          46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        1     14      4      2
  DEL PEAK  4(2P12) WILD-TYPE    234    203    109     33
D31V3, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         1                         234
  CLUS_2                        14                         203
  CLUS_3                         4                         109
  CLUS_4                         2                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        0      7      0
  DEL PEAK  4(2P12) WILD-TYPE     98    148    121
D31V4, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          98
  CLUS_2                         7                         148
  CLUS_3                         0                         121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        6      6      2      3
  DEL PEAK  4(2P12) WILD-TYPE     91    172     37    134
D31V5, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         6                          91
  CLUS_2                         6                         172
  CLUS_3                         2                          37
  CLUS_4                         3                         134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        2     12      3
  DEL PEAK  4(2P12) WILD-TYPE     50    290     94
D31V6, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          50
  CLUS_2                        12                         290
  CLUS_3                         3                          94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P12) MUTATED        2      3      3     13
  DEL PEAK  4(2P12) WILD-TYPE    125    127    136    175
D31V7, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                         125
  CLUS_2                         3                         127
  CLUS_3                         3                         136
  CLUS_4                        13                         175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  4(2P12) MUTATED        0      2      0      1      2      7      9
  DEL PEAK  4(2P12) WILD-TYPE     64    105     45     64     64     89    132
D31V8, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         0                          64
  CLUS_2                         2                         105
  CLUS_3                         0                          45
  CLUS_4                         1                          64
  CLUS_5                         2                          64
  CLUS_6                         7                          89
  CLUS_7                         9                         132
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        5      0     15
  DEL PEAK  4(2P12) WILD-TYPE    206     95    217
D31V9, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         5                         206
  CLUS_2                         0                          95
  CLUS_3                        15                         217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        5      4     11
  DEL PEAK  4(2P12) WILD-TYPE    223    135    160
D31V10, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         5                         223
  CLUS_2                         4                         135
  CLUS_3                        11                         160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P12) MUTATED        2      2      1
  DEL PEAK  4(2P12) WILD-TYPE     98    107     84
D31V11, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          98
  CLUS_2                         2                         107
  CLUS_3                         1                          84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P12) MUTATED        3      1      1      0      0
  DEL PEAK  4(2P12) WILD-TYPE     79     51     66     33     60
D31V12, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         3                          79
  CLUS_2                         1                          51
  CLUS_3                         1                          66
  CLUS_4                         0                          33
  CLUS_5                         0                          60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        4      6      5      4
  DEL PEAK  5(2Q22.1) WILD-TYPE     39     56     64     37
D32V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            39
  CLUS_2                           6                            56
  CLUS_3                           5                            64
  CLUS_4                           4                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        5      2      9      3
  DEL PEAK  5(2Q22.1) WILD-TYPE     44     39     67     46
D32V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                            44
  CLUS_2                           2                            39
  CLUS_3                           9                            67
  CLUS_4                           3                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        7     18      7      2
  DEL PEAK  5(2Q22.1) WILD-TYPE    228    199    106     33
D32V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                           228
  CLUS_2                          18                           199
  CLUS_3                           7                           106
  CLUS_4                           2                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        3      8      5
  DEL PEAK  5(2Q22.1) WILD-TYPE     95    147    116
D32V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           3                            95
  CLUS_2                           8                           147
  CLUS_3                           5                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        8      8      3      5
  DEL PEAK  5(2Q22.1) WILD-TYPE     89    170     36    132
D32V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           8                            89
  CLUS_2                           8                           170
  CLUS_3                           3                            36
  CLUS_4                           5                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        5     15      4
  DEL PEAK  5(2Q22.1) WILD-TYPE     47    287     93
D32V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                            47
  CLUS_2                          15                           287
  CLUS_3                           4                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q22.1) MUTATED        7      5      7     15
  DEL PEAK  5(2Q22.1) WILD-TYPE    120    125    132    173
D32V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                           120
  CLUS_2                           5                           125
  CLUS_3                           7                           132
  CLUS_4                          15                           173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q22.1) MUTATED        2      2      2      3      4     11
  DEL PEAK  5(2Q22.1) WILD-TYPE     62    105     43     62     62     85
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q22.1) MUTATED       10
  DEL PEAK  5(2Q22.1) WILD-TYPE    131
D32V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           2                            62
  CLUS_2                           2                           105
  CLUS_3                           2                            43
  CLUS_4                           3                            62
  CLUS_5                           4                            62
  CLUS_6                          11                            85
  CLUS_7                          10                           131
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       10      4     16
  DEL PEAK  5(2Q22.1) WILD-TYPE    201     91    216
D32V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          10                           201
  CLUS_2                           4                            91
  CLUS_3                          16                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        9      6     15
  DEL PEAK  5(2Q22.1) WILD-TYPE    219    133    156
D32V10, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           9                           219
  CLUS_2                           6                           133
  CLUS_3                          15                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        5      3      4
  DEL PEAK  5(2Q22.1) WILD-TYPE     95    106     81
D32V11, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                            95
  CLUS_2                           3                           106
  CLUS_3                           4                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED        4      2      3      1      2
  DEL PEAK  5(2Q22.1) WILD-TYPE     78     50     64     32     58
D32V12, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            78
  CLUS_2                           2                            50
  CLUS_3                           3                            64
  CLUS_4                           1                            32
  CLUS_5                           2                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  6(2Q37.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.2) MUTATED        4      5      5      3
  DEL PEAK  6(2Q37.2) WILD-TYPE     39     57     64     38
D33V1, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           4                            39
  CLUS_2                           5                            57
  CLUS_3                           5                            64
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.2) MUTATED        3      2      9      3
  DEL PEAK  6(2Q37.2) WILD-TYPE     46     39     67     46
D33V2, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           3                            46
  CLUS_2                           2                            39
  CLUS_3                           9                            67
  CLUS_4                           3                            46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.2) MUTATED        9     15      5      2
  DEL PEAK  6(2Q37.2) WILD-TYPE    226    202    108     33
D33V3, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           9                           226
  CLUS_2                          15                           202
  CLUS_3                           5                           108
  CLUS_4                           2                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.2) MUTATED        3      7      4
  DEL PEAK  6(2Q37.2) WILD-TYPE     95    148    117
D33V4, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           3                            95
  CLUS_2                           7                           148
  CLUS_3                           4                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.2) MUTATED        6     10      2      6
  DEL PEAK  6(2Q37.2) WILD-TYPE     91    168     37    131
D33V5, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           6                            91
  CLUS_2                          10                           168
  CLUS_3                           2                            37
  CLUS_4                           6                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.2) MUTATED        4     19      1
  DEL PEAK  6(2Q37.2) WILD-TYPE     48    283     96
D33V6, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                          19                           283
  CLUS_3                           1                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.2) MUTATED        7      7      5     12
  DEL PEAK  6(2Q37.2) WILD-TYPE    120    123    134    176
D33V7, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           7                           120
  CLUS_2                           7                           123
  CLUS_3                           5                           134
  CLUS_4                          12                           176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q37.2) MUTATED        3      2      4      1      4      8
  DEL PEAK  6(2Q37.2) WILD-TYPE     61    105     41     64     62     88
                               vv
clus                            CLUS_7
  DEL PEAK  6(2Q37.2) MUTATED        9
  DEL PEAK  6(2Q37.2) WILD-TYPE    132
D33V8, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           2                           105
  CLUS_3                           4                            41
  CLUS_4                           1                            64
  CLUS_5                           4                            62
  CLUS_6                           8                            88
  CLUS_7                           9                           132
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.2) MUTATED        9      5     16
  DEL PEAK  6(2Q37.2) WILD-TYPE    202     90    216
D33V9, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           9                           202
  CLUS_2                           5                            90
  CLUS_3                          16                           216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.2) MUTATED        8      5     17
  DEL PEAK  6(2Q37.2) WILD-TYPE    220    134    154
D33V10, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           8                           220
  CLUS_2                           5                           134
  CLUS_3                          17                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.2) MUTATED        2      3      6
  DEL PEAK  6(2Q37.2) WILD-TYPE     98    106     79
D33V11, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           2                            98
  CLUS_2                           3                           106
  CLUS_3                           6                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q37.2) MUTATED        2      2      4      1      2
  DEL PEAK  6(2Q37.2) WILD-TYPE     80     50     63     32     58
D33V12, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           2                            80
  CLUS_2                           2                            50
  CLUS_3                           4                            63
  CLUS_4                           1                            32
  CLUS_5                           2                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  7(3P26.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.3) MUTATED        9     10     11      3
  DEL PEAK  7(3P26.3) WILD-TYPE     34     52     58     38
D34V1, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                           9                            34
  CLUS_2                          10                            52
  CLUS_3                          11                            58
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.3) MUTATED        6      6     10     11
  DEL PEAK  7(3P26.3) WILD-TYPE     43     35     66     38
D34V2, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                           6                            43
  CLUS_2                           6                            35
  CLUS_3                          10                            66
  CLUS_4                          11                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.3) MUTATED       27     40     16      8
  DEL PEAK  7(3P26.3) WILD-TYPE    208    177     97     27
D34V3, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          27                           208
  CLUS_2                          40                           177
  CLUS_3                          16                            97
  CLUS_4                           8                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.3) MUTATED       16     23     20
  DEL PEAK  7(3P26.3) WILD-TYPE     82    132    101
D34V4, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          16                            82
  CLUS_2                          23                           132
  CLUS_3                          20                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.3) MUTATED       18     23      5     20
  DEL PEAK  7(3P26.3) WILD-TYPE     79    155     34    117
D34V5, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          18                            79
  CLUS_2                          23                           155
  CLUS_3                           5                            34
  CLUS_4                          20                           117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.3) MUTATED        8     44     14
  DEL PEAK  7(3P26.3) WILD-TYPE     44    258     83
D34V6, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                          44                           258
  CLUS_3                          14                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P26.3) MUTATED       21     13     22     32
  DEL PEAK  7(3P26.3) WILD-TYPE    106    117    117    156
D34V7, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          21                           106
  CLUS_2                          13                           117
  CLUS_3                          22                           117
  CLUS_4                          32                           156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P26.3) MUTATED        7     17      4      9     12      9
  DEL PEAK  7(3P26.3) WILD-TYPE     57     90     41     56     54     87
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P26.3) MUTATED       30
  DEL PEAK  7(3P26.3) WILD-TYPE    111
D34V8, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                           7                            57
  CLUS_2                          17                            90
  CLUS_3                           4                            41
  CLUS_4                           9                            56
  CLUS_5                          12                            54
  CLUS_6                           9                            87
  CLUS_7                          30                           111
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.3) MUTATED       36     11     36
  DEL PEAK  7(3P26.3) WILD-TYPE    175     84    196
D34V9, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          36                           175
  CLUS_2                          11                            84
  CLUS_3                          36                           196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.3) MUTATED       31     23     29
  DEL PEAK  7(3P26.3) WILD-TYPE    197    116    142
D34V10, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          31                           197
  CLUS_2                          23                           116
  CLUS_3                          29                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P26.3) MUTATED       15     11     19
  DEL PEAK  7(3P26.3) WILD-TYPE     85     98     66
D34V11, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          15                            85
  CLUS_2                          11                            98
  CLUS_3                          19                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P26.3) MUTATED       11     11     11      6      6
  DEL PEAK  7(3P26.3) WILD-TYPE     71     41     56     27     54
D34V12, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          11                            71
  CLUS_2                          11                            41
  CLUS_3                          11                            56
  CLUS_4                           6                            27
  CLUS_5                           6                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  8(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       12     13     13      7
  DEL PEAK  8(3P14.2) WILD-TYPE     31     49     56     34
D35V1, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          13                            49
  CLUS_3                          13                            56
  CLUS_4                           7                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       10     11     12     12
  DEL PEAK  8(3P14.2) WILD-TYPE     39     30     64     37
D35V2, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          10                            39
  CLUS_2                          11                            30
  CLUS_3                          12                            64
  CLUS_4                          12                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       39     44     22      7
  DEL PEAK  8(3P14.2) WILD-TYPE    196    173     91     28
D35V3, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          39                           196
  CLUS_2                          44                           173
  CLUS_3                          22                            91
  CLUS_4                           7                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       18     26     24
  DEL PEAK  8(3P14.2) WILD-TYPE     80    129     97
D35V4, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          18                            80
  CLUS_2                          26                           129
  CLUS_3                          24                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       21     27      5     26
  DEL PEAK  8(3P14.2) WILD-TYPE     76    151     34    111
D35V5, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          21                            76
  CLUS_2                          27                           151
  CLUS_3                           5                            34
  CLUS_4                          26                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       13     48     18
  DEL PEAK  8(3P14.2) WILD-TYPE     39    254     79
D35V6, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          13                            39
  CLUS_2                          48                           254
  CLUS_3                          18                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3P14.2) MUTATED       23     18     30     38
  DEL PEAK  8(3P14.2) WILD-TYPE    104    112    109    150
D35V7, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          23                           104
  CLUS_2                          18                           112
  CLUS_3                          30                           109
  CLUS_4                          38                           150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3P14.2) MUTATED        8     23      6     12     12     15
  DEL PEAK  8(3P14.2) WILD-TYPE     56     84     39     53     54     81
                               vv
clus                            CLUS_7
  DEL PEAK  8(3P14.2) MUTATED       33
  DEL PEAK  8(3P14.2) WILD-TYPE    108
D35V8, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                          23                            84
  CLUS_3                           6                            39
  CLUS_4                          12                            53
  CLUS_5                          12                            54
  CLUS_6                          15                            81
  CLUS_7                          33                           108
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       42     13     46
  DEL PEAK  8(3P14.2) WILD-TYPE    169     82    186
D35V9, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          42                           169
  CLUS_2                          13                            82
  CLUS_3                          46                           186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       36     29     36
  DEL PEAK  8(3P14.2) WILD-TYPE    192    110    135
D35V10, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          36                           192
  CLUS_2                          29                           110
  CLUS_3                          36                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3P14.2) MUTATED       23     13     18
  DEL PEAK  8(3P14.2) WILD-TYPE     77     96     67
D35V11, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          23                            77
  CLUS_2                          13                            96
  CLUS_3                          18                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3P14.2) MUTATED       15     14     11      7      7
  DEL PEAK  8(3P14.2) WILD-TYPE     67     38     56     26     53
D35V12, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          15                            67
  CLUS_2                          14                            38
  CLUS_3                          11                            56
  CLUS_4                           7                            26
  CLUS_5                           7                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  9(3Q26.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED        4      8      8      2
  DEL PEAK  9(3Q26.31) WILD-TYPE     39     54     61     39
D36V1, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            4                             39
  CLUS_2                            8                             54
  CLUS_3                            8                             61
  CLUS_4                            2                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED        4      5      7      6
  DEL PEAK  9(3Q26.31) WILD-TYPE     45     36     69     43
D36V2, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            4                             45
  CLUS_2                            5                             36
  CLUS_3                            7                             69
  CLUS_4                            6                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED       20     30      9      3
  DEL PEAK  9(3Q26.31) WILD-TYPE    215    187    104     32
D36V3, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           20                            215
  CLUS_2                           30                            187
  CLUS_3                            9                            104
  CLUS_4                            3                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       11     19     10
  DEL PEAK  9(3Q26.31) WILD-TYPE     87    136    111
D36V4, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           11                             87
  CLUS_2                           19                            136
  CLUS_3                           10                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED        6     15      5     18
  DEL PEAK  9(3Q26.31) WILD-TYPE     91    163     34    119
D36V5, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            6                             91
  CLUS_2                           15                            163
  CLUS_3                            5                             34
  CLUS_4                           18                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED        2     31     11
  DEL PEAK  9(3Q26.31) WILD-TYPE     50    271     86
D36V6, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            2                             50
  CLUS_2                           31                            271
  CLUS_3                           11                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(3Q26.31) MUTATED       11      9     20     20
  DEL PEAK  9(3Q26.31) WILD-TYPE    116    121    119    168
D36V7, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           11                            116
  CLUS_2                            9                            121
  CLUS_3                           20                            119
  CLUS_4                           20                            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(3Q26.31) MUTATED        6      9      3     11      5      7
  DEL PEAK  9(3Q26.31) WILD-TYPE     58     98     42     54     61     89
                                vv
clus                             CLUS_7
  DEL PEAK  9(3Q26.31) MUTATED       19
  DEL PEAK  9(3Q26.31) WILD-TYPE    122
D36V8, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                            9                             98
  CLUS_3                            3                             42
  CLUS_4                           11                             54
  CLUS_5                            5                             61
  CLUS_6                            7                             89
  CLUS_7                           19                            122
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       23      6     25
  DEL PEAK  9(3Q26.31) WILD-TYPE    188     89    207
D36V9, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           23                            188
  CLUS_2                            6                             89
  CLUS_3                           25                            207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       16     20     18
  DEL PEAK  9(3Q26.31) WILD-TYPE    212    119    153
D36V10, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           16                            212
  CLUS_2                           20                            119
  CLUS_3                           18                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(3Q26.31) MUTATED       14      8      7
  DEL PEAK  9(3Q26.31) WILD-TYPE     86    101     78
D36V11, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           14                             86
  CLUS_2                            8                            101
  CLUS_3                            7                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(3Q26.31) MUTATED        3      8      4      7      7
  DEL PEAK  9(3Q26.31) WILD-TYPE     79     44     63     26     53
D36V12, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            3                             79
  CLUS_2                            8                             44
  CLUS_3                            4                             63
  CLUS_4                            7                             26
  CLUS_5                            7                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 10(4P16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.1) MUTATED       12     26     28      8
  DEL PEAK 10(4P16.1) WILD-TYPE     31     36     41     33
D37V1, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          12                            31
  CLUS_2                          26                            36
  CLUS_3                          28                            41
  CLUS_4                           8                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.1) MUTATED       11     16     23     24
  DEL PEAK 10(4P16.1) WILD-TYPE     38     25     53     25
D37V2, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          11                            38
  CLUS_2                          16                            25
  CLUS_3                          23                            53
  CLUS_4                          24                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.1) MUTATED       36    102     31     26
  DEL PEAK 10(4P16.1) WILD-TYPE    199    115     82      9
D37V3, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          36                           199
  CLUS_2                         102                           115
  CLUS_3                          31                            82
  CLUS_4                          26                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.1) MUTATED       31     62     25
  DEL PEAK 10(4P16.1) WILD-TYPE     67     93     96
D37V4, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          31                            67
  CLUS_2                          62                            93
  CLUS_3                          25                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.1) MUTATED       34     49     13     36
  DEL PEAK 10(4P16.1) WILD-TYPE     63    129     26    101
D37V5, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          34                            63
  CLUS_2                          49                           129
  CLUS_3                          13                            26
  CLUS_4                          36                           101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.1) MUTATED       20     84     28
  DEL PEAK 10(4P16.1) WILD-TYPE     32    218     69
D37V6, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          20                            32
  CLUS_2                          84                           218
  CLUS_3                          28                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4P16.1) MUTATED       45     27     53     64
  DEL PEAK 10(4P16.1) WILD-TYPE     82    103     86    124
D37V7, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          45                            82
  CLUS_2                          27                           103
  CLUS_3                          53                            86
  CLUS_4                          64                           124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4P16.1) MUTATED       16     30      4     26     30     26
  DEL PEAK 10(4P16.1) WILD-TYPE     48     77     41     39     36     70
                               vv
clus                            CLUS_7
  DEL PEAK 10(4P16.1) MUTATED       57
  DEL PEAK 10(4P16.1) WILD-TYPE     84
D37V8, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          16                            48
  CLUS_2                          30                            77
  CLUS_3                           4                            41
  CLUS_4                          26                            39
  CLUS_5                          30                            36
  CLUS_6                          26                            70
  CLUS_7                          57                            84
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.1) MUTATED       73     25     76
  DEL PEAK 10(4P16.1) WILD-TYPE    138     70    156
D37V9, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          73                           138
  CLUS_2                          25                            70
  CLUS_3                          76                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.1) MUTATED       66     47     61
  DEL PEAK 10(4P16.1) WILD-TYPE    162     92    110
D37V10, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          66                           162
  CLUS_2                          47                            92
  CLUS_3                          61                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4P16.1) MUTATED       40     18     33
  DEL PEAK 10(4P16.1) WILD-TYPE     60     91     52
D37V11, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          40                            60
  CLUS_2                          18                            91
  CLUS_3                          33                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4P16.1) MUTATED       26     24     25     10      6
  DEL PEAK 10(4P16.1) WILD-TYPE     56     28     42     23     54
D37V12, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          26                            56
  CLUS_2                          24                            28
  CLUS_3                          25                            42
  CLUS_4                          10                            23
  CLUS_5                           6                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 11(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       14     27     30      7
  DEL PEAK 11(4Q22.1) WILD-TYPE     29     35     39     34
D38V1, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          14                            29
  CLUS_2                          27                            35
  CLUS_3                          30                            39
  CLUS_4                           7                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       11     18     25     24
  DEL PEAK 11(4Q22.1) WILD-TYPE     38     23     51     25
D38V2, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          11                            38
  CLUS_2                          18                            23
  CLUS_3                          25                            51
  CLUS_4                          24                            25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       43    111     37     25
  DEL PEAK 11(4Q22.1) WILD-TYPE    192    106     76     10
D38V3, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          43                           192
  CLUS_2                         111                           106
  CLUS_3                          37                            76
  CLUS_4                          25                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       37     74     27
  DEL PEAK 11(4Q22.1) WILD-TYPE     61     81     94
D38V4, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          37                            61
  CLUS_2                          74                            81
  CLUS_3                          27                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       38     58     13     42
  DEL PEAK 11(4Q22.1) WILD-TYPE     59    120     26     95
D38V5, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          38                            59
  CLUS_2                          58                           120
  CLUS_3                          13                            26
  CLUS_4                          42                            95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       20     98     33
  DEL PEAK 11(4Q22.1) WILD-TYPE     32    204     64
D38V6, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          20                            32
  CLUS_2                          98                           204
  CLUS_3                          33                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q22.1) MUTATED       46     26     60     75
  DEL PEAK 11(4Q22.1) WILD-TYPE     81    104     79    113
D38V7, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          46                            81
  CLUS_2                          26                           104
  CLUS_3                          60                            79
  CLUS_4                          75                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q22.1) MUTATED       16     34      5     32     32     26
  DEL PEAK 11(4Q22.1) WILD-TYPE     48     73     40     33     34     70
                               vv
clus                            CLUS_7
  DEL PEAK 11(4Q22.1) MUTATED       62
  DEL PEAK 11(4Q22.1) WILD-TYPE     79
D38V8, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          16                            48
  CLUS_2                          34                            73
  CLUS_3                           5                            40
  CLUS_4                          32                            33
  CLUS_5                          32                            34
  CLUS_6                          26                            70
  CLUS_7                          62                            79
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       86     23     85
  DEL PEAK 11(4Q22.1) WILD-TYPE    125     72    147
D38V9, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          86                           125
  CLUS_2                          23                            72
  CLUS_3                          85                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       72     58     64
  DEL PEAK 11(4Q22.1) WILD-TYPE    156     81    107
D38V10, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          72                           156
  CLUS_2                          58                            81
  CLUS_3                          64                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q22.1) MUTATED       46     25     34
  DEL PEAK 11(4Q22.1) WILD-TYPE     54     84     51
D38V11, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          46                            54
  CLUS_2                          25                            84
  CLUS_3                          34                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q22.1) MUTATED       30     24     29     15      7
  DEL PEAK 11(4Q22.1) WILD-TYPE     52     28     38     18     53
D38V12, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          30                            52
  CLUS_2                          24                            28
  CLUS_3                          29                            38
  CLUS_4                          15                            18
  CLUS_5                           7                            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 12(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       13     29     29      8
  DEL PEAK 12(4Q35.1) WILD-TYPE     30     33     40     33
D39V1, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          13                            30
  CLUS_2                          29                            33
  CLUS_3                          29                            40
  CLUS_4                           8                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       12     19     25     23
  DEL PEAK 12(4Q35.1) WILD-TYPE     37     22     51     26
D39V2, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          12                            37
  CLUS_2                          19                            22
  CLUS_3                          25                            51
  CLUS_4                          23                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       45    115     42     23
  DEL PEAK 12(4Q35.1) WILD-TYPE    190    102     71     12
D39V3, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          45                           190
  CLUS_2                         115                           102
  CLUS_3                          42                            71
  CLUS_4                          23                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       40     75     27
  DEL PEAK 12(4Q35.1) WILD-TYPE     58     80     94
D39V4, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          40                            58
  CLUS_2                          75                            80
  CLUS_3                          27                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       39     60     18     44
  DEL PEAK 12(4Q35.1) WILD-TYPE     58    118     21     93
D39V5, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          39                            58
  CLUS_2                          60                           118
  CLUS_3                          18                            21
  CLUS_4                          44                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       22    105     34
  DEL PEAK 12(4Q35.1) WILD-TYPE     30    197     63
D39V6, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          22                            30
  CLUS_2                         105                           197
  CLUS_3                          34                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(4Q35.1) MUTATED       52     28     60     77
  DEL PEAK 12(4Q35.1) WILD-TYPE     75    102     79    111
D39V7, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          52                            75
  CLUS_2                          28                           102
  CLUS_3                          60                            79
  CLUS_4                          77                           111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(4Q35.1) MUTATED       21     36      6     31     31     31
  DEL PEAK 12(4Q35.1) WILD-TYPE     43     71     39     34     35     65
                               vv
clus                            CLUS_7
  DEL PEAK 12(4Q35.1) MUTATED       61
  DEL PEAK 12(4Q35.1) WILD-TYPE     80
D39V8, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          21                            43
  CLUS_2                          36                            71
  CLUS_3                           6                            39
  CLUS_4                          31                            34
  CLUS_5                          31                            35
  CLUS_6                          31                            65
  CLUS_7                          61                            80
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       88     30     83
  DEL PEAK 12(4Q35.1) WILD-TYPE    123     65    149
D39V9, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          88                           123
  CLUS_2                          30                            65
  CLUS_3                          83                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       79     59     63
  DEL PEAK 12(4Q35.1) WILD-TYPE    149     80    108
D39V10, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          79                           149
  CLUS_2                          59                            80
  CLUS_3                          63                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(4Q35.1) MUTATED       48     23     38
  DEL PEAK 12(4Q35.1) WILD-TYPE     52     86     47
D39V11, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          48                            52
  CLUS_2                          23                            86
  CLUS_3                          38                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(4Q35.1) MUTATED       30     27     30     13      9
  DEL PEAK 12(4Q35.1) WILD-TYPE     52     25     37     20     51
D39V12, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          30                            52
  CLUS_2                          27                            25
  CLUS_3                          30                            37
  CLUS_4                          13                            20
  CLUS_5                           9                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 13(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED       10     21     19      1
  DEL PEAK 13(5Q11.2) WILD-TYPE     33     41     50     40
D40V1, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          10                            33
  CLUS_2                          21                            41
  CLUS_3                          19                            50
  CLUS_4                           1                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED        9     18      8     16
  DEL PEAK 13(5Q11.2) WILD-TYPE     40     23     68     33
D40V2, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                          18                            23
  CLUS_3                           8                            68
  CLUS_4                          16                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED       22     73     36     20
  DEL PEAK 13(5Q11.2) WILD-TYPE    213    144     77     15
D40V3, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          22                           213
  CLUS_2                          73                           144
  CLUS_3                          36                            77
  CLUS_4                          20                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED       25     55     21
  DEL PEAK 13(5Q11.2) WILD-TYPE     73    100    100
D40V4, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          25                            73
  CLUS_2                          55                           100
  CLUS_3                          21                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED       33     41     11     24
  DEL PEAK 13(5Q11.2) WILD-TYPE     64    137     28    113
D40V5, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          33                            64
  CLUS_2                          41                           137
  CLUS_3                          11                            28
  CLUS_4                          24                           113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED       18     68     23
  DEL PEAK 13(5Q11.2) WILD-TYPE     34    234     74
D40V6, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          18                            34
  CLUS_2                          68                           234
  CLUS_3                          23                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(5Q11.2) MUTATED       40     18     43     47
  DEL PEAK 13(5Q11.2) WILD-TYPE     87    112     96    141
D40V7, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          40                            87
  CLUS_2                          18                           112
  CLUS_3                          43                            96
  CLUS_4                          47                           141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(5Q11.2) MUTATED       14     26      3     20     26     16
  DEL PEAK 13(5Q11.2) WILD-TYPE     50     81     42     45     40     80
                               vv
clus                            CLUS_7
  DEL PEAK 13(5Q11.2) MUTATED       43
  DEL PEAK 13(5Q11.2) WILD-TYPE     98
D40V8, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          14                            50
  CLUS_2                          26                            81
  CLUS_3                           3                            42
  CLUS_4                          20                            45
  CLUS_5                          26                            40
  CLUS_6                          16                            80
  CLUS_7                          43                            98
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED       56     25     55
  DEL PEAK 13(5Q11.2) WILD-TYPE    155     70    177
D40V9, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          56                           155
  CLUS_2                          25                            70
  CLUS_3                          55                           177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED       56     36     44
  DEL PEAK 13(5Q11.2) WILD-TYPE    172    103    127
D40V10, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          56                           172
  CLUS_2                          36                           103
  CLUS_3                          44                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(5Q11.2) MUTATED       35     11     29
  DEL PEAK 13(5Q11.2) WILD-TYPE     65     98     56
D40V11, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          35                            65
  CLUS_2                          11                            98
  CLUS_3                          29                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(5Q11.2) MUTATED       22     23     23      6      1
  DEL PEAK 13(5Q11.2) WILD-TYPE     60     29     44     27     59
D40V12, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          22                            60
  CLUS_2                          23                            29
  CLUS_3                          23                            44
  CLUS_4                           6                            27
  CLUS_5                           1                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 14(5Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED        9     23     26      3
  DEL PEAK 14(5Q22.2) WILD-TYPE     34     39     43     38
D41V1, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           9                            34
  CLUS_2                          23                            39
  CLUS_3                          26                            43
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED        9     21     14     17
  DEL PEAK 14(5Q22.2) WILD-TYPE     40     20     62     32
D41V2, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                          21                            20
  CLUS_3                          14                            62
  CLUS_4                          17                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       36     82     43     21
  DEL PEAK 14(5Q22.2) WILD-TYPE    199    135     70     14
D41V3, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          36                           199
  CLUS_2                          82                           135
  CLUS_3                          43                            70
  CLUS_4                          21                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       30     59     32
  DEL PEAK 14(5Q22.2) WILD-TYPE     68     96     89
D41V4, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          30                            68
  CLUS_2                          59                            96
  CLUS_3                          32                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       36     52     13     35
  DEL PEAK 14(5Q22.2) WILD-TYPE     61    126     26    102
D41V5, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          36                            61
  CLUS_2                          52                           126
  CLUS_3                          13                            26
  CLUS_4                          35                           102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       20     88     28
  DEL PEAK 14(5Q22.2) WILD-TYPE     32    214     69
D41V6, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          20                            32
  CLUS_2                          88                           214
  CLUS_3                          28                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(5Q22.2) MUTATED       38     29     54     57
  DEL PEAK 14(5Q22.2) WILD-TYPE     89    101     85    131
D41V7, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          38                            89
  CLUS_2                          29                           101
  CLUS_3                          54                            85
  CLUS_4                          57                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(5Q22.2) MUTATED       17     34      6     26     24     18
  DEL PEAK 14(5Q22.2) WILD-TYPE     47     73     39     39     42     78
                               vv
clus                            CLUS_7
  DEL PEAK 14(5Q22.2) MUTATED       53
  DEL PEAK 14(5Q22.2) WILD-TYPE     88
D41V8, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          17                            47
  CLUS_2                          34                            73
  CLUS_3                           6                            39
  CLUS_4                          26                            39
  CLUS_5                          24                            42
  CLUS_6                          18                            78
  CLUS_7                          53                            88
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       72     28     67
  DEL PEAK 14(5Q22.2) WILD-TYPE    139     67    165
D41V9, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          72                           139
  CLUS_2                          28                            67
  CLUS_3                          67                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       67     50     50
  DEL PEAK 14(5Q22.2) WILD-TYPE    161     89    121
D41V10, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          67                           161
  CLUS_2                          50                            89
  CLUS_3                          50                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(5Q22.2) MUTATED       43     22     29
  DEL PEAK 14(5Q22.2) WILD-TYPE     57     87     56
D41V11, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          43                            57
  CLUS_2                          22                            87
  CLUS_3                          29                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(5Q22.2) MUTATED       30     27     20     11      6
  DEL PEAK 14(5Q22.2) WILD-TYPE     52     25     47     22     54
D41V12, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          30                            52
  CLUS_2                          27                            25
  CLUS_3                          20                            47
  CLUS_4                          11                            22
  CLUS_5                           6                            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 15(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED        5      8     10      7
  DEL PEAK 15(6P25.3) WILD-TYPE     38     54     59     34
D42V1, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           5                            38
  CLUS_2                           8                            54
  CLUS_3                          10                            59
  CLUS_4                           7                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED        9      3     13      5
  DEL PEAK 15(6P25.3) WILD-TYPE     40     38     63     44
D42V2, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                           3                            38
  CLUS_3                          13                            63
  CLUS_4                           5                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       26     24     20      9
  DEL PEAK 15(6P25.3) WILD-TYPE    209    193     93     26
D42V3, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          26                           209
  CLUS_2                          24                           193
  CLUS_3                          20                            93
  CLUS_4                           9                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       13     23     10
  DEL PEAK 15(6P25.3) WILD-TYPE     85    132    111
D42V4, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          13                            85
  CLUS_2                          23                           132
  CLUS_3                          10                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       20     17      5     12
  DEL PEAK 15(6P25.3) WILD-TYPE     77    161     34    125
D42V5, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          20                            77
  CLUS_2                          17                           161
  CLUS_3                           5                            34
  CLUS_4                          12                           125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED        8     36     10
  DEL PEAK 15(6P25.3) WILD-TYPE     44    266     87
D42V6, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                          36                           266
  CLUS_3                          10                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(6P25.3) MUTATED       18     13     21     26
  DEL PEAK 15(6P25.3) WILD-TYPE    109    117    118    162
D42V7, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          18                           109
  CLUS_2                          13                           117
  CLUS_3                          21                           118
  CLUS_4                          26                           162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(6P25.3) MUTATED       10     11      6     11      8     16
  DEL PEAK 15(6P25.3) WILD-TYPE     54     96     39     54     58     80
                               vv
clus                            CLUS_7
  DEL PEAK 15(6P25.3) MUTATED       16
  DEL PEAK 15(6P25.3) WILD-TYPE    125
D42V8, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          10                            54
  CLUS_2                          11                            96
  CLUS_3                           6                            39
  CLUS_4                          11                            54
  CLUS_5                           8                            58
  CLUS_6                          16                            80
  CLUS_7                          16                           125
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       27     16     30
  DEL PEAK 15(6P25.3) WILD-TYPE    184     79    202
D42V9, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          27                           184
  CLUS_2                          16                            79
  CLUS_3                          30                           202
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       33     16     24
  DEL PEAK 15(6P25.3) WILD-TYPE    195    123    147
D42V10, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          33                           195
  CLUS_2                          16                           123
  CLUS_3                          24                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(6P25.3) MUTATED       14     11     13
  DEL PEAK 15(6P25.3) WILD-TYPE     86     98     72
D42V11, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          14                            86
  CLUS_2                          11                            98
  CLUS_3                          13                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(6P25.3) MUTATED       13      5      9      3      8
  DEL PEAK 15(6P25.3) WILD-TYPE     69     47     58     30     52
D42V12, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          13                            69
  CLUS_2                           5                            47
  CLUS_3                           9                            58
  CLUS_4                           3                            30
  CLUS_5                           8                            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 16(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED        6     12     15      8
  DEL PEAK 16(6Q26) WILD-TYPE     37     50     54     33
D43V1, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         6                          37
  CLUS_2                        12                          50
  CLUS_3                        15                          54
  CLUS_4                         8                          33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED        8      7     17      9
  DEL PEAK 16(6Q26) WILD-TYPE     41     34     59     40
D43V2, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         8                          41
  CLUS_2                         7                          34
  CLUS_3                        17                          59
  CLUS_4                         9                          40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       28     33     19     10
  DEL PEAK 16(6Q26) WILD-TYPE    207    184     94     25
D43V3, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        28                         207
  CLUS_2                        33                         184
  CLUS_3                        19                          94
  CLUS_4                        10                          25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       12     21     14
  DEL PEAK 16(6Q26) WILD-TYPE     86    134    107
D43V4, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        12                          86
  CLUS_2                        21                         134
  CLUS_3                        14                         107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       20     25      9     13
  DEL PEAK 16(6Q26) WILD-TYPE     77    153     30    124
D43V5, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        20                          77
  CLUS_2                        25                         153
  CLUS_3                         9                          30
  CLUS_4                        13                         124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       11     47      9
  DEL PEAK 16(6Q26) WILD-TYPE     41    255     88
D43V6, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        11                          41
  CLUS_2                        47                         255
  CLUS_3                         9                          88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(6Q26) MUTATED       16     20     15     38
  DEL PEAK 16(6Q26) WILD-TYPE    111    110    124    150
D43V7, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        16                         111
  CLUS_2                        20                         110
  CLUS_3                        15                         124
  CLUS_4                        38                         150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 16(6Q26) MUTATED        9     13      5      6     10     25     21
  DEL PEAK 16(6Q26) WILD-TYPE     55     94     40     59     56     71    120
D43V8, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         9                          55
  CLUS_2                        13                          94
  CLUS_3                         5                          40
  CLUS_4                         6                          59
  CLUS_5                        10                          56
  CLUS_6                        25                          71
  CLUS_7                        21                         120
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       28     17     41
  DEL PEAK 16(6Q26) WILD-TYPE    183     78    191
D43V9, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        28                         183
  CLUS_2                        17                          78
  CLUS_3                        41                         191
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       39     17     30
  DEL PEAK 16(6Q26) WILD-TYPE    189    122    141
D43V10, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        39                         189
  CLUS_2                        17                         122
  CLUS_3                        30                         141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(6Q26) MUTATED       13     12     14
  DEL PEAK 16(6Q26) WILD-TYPE     87     97     71
D43V11, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        13                          87
  CLUS_2                        12                          97
  CLUS_3                        14                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(6Q26) MUTATED       12      6     12      2      7
  DEL PEAK 16(6Q26) WILD-TYPE     70     46     55     31     53
D43V12, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        12                          70
  CLUS_2                         6                          46
  CLUS_3                        12                          55
  CLUS_4                         2                          31
  CLUS_5                         7                          53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 17(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        2      2      0      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     41     60     69     40
D44V1, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                            41
  CLUS_2                           2                            60
  CLUS_3                           0                            69
  CLUS_4                           1                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        1      2      1      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     48     39     75     48
D44V2, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           1                            48
  CLUS_2                           2                            39
  CLUS_3                           1                            75
  CLUS_4                           1                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        7      5      3      1
  DEL PEAK 17(7Q31.1) WILD-TYPE    228    212    110     34
D44V3, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           7                           228
  CLUS_2                           5                           212
  CLUS_3                           3                           110
  CLUS_4                           1                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        3      4      3
  DEL PEAK 17(7Q31.1) WILD-TYPE     95    151    118
D44V4, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           3                            95
  CLUS_2                           4                           151
  CLUS_3                           3                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        2      4      1      6
  DEL PEAK 17(7Q31.1) WILD-TYPE     95    174     38    131
D44V5, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                            95
  CLUS_2                           4                           174
  CLUS_3                           1                            38
  CLUS_4                           6                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        0      8      5
  DEL PEAK 17(7Q31.1) WILD-TYPE     52    294     92
D44V6, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            52
  CLUS_2                           8                           294
  CLUS_3                           5                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q31.1) MUTATED        3      2      5      6
  DEL PEAK 17(7Q31.1) WILD-TYPE    124    128    134    182
D44V7, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           3                           124
  CLUS_2                           2                           128
  CLUS_3                           5                           134
  CLUS_4                           6                           182
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q31.1) MUTATED        0      2      1      3      3      3
  DEL PEAK 17(7Q31.1) WILD-TYPE     64    105     44     62     63     93
                               vv
clus                            CLUS_7
  DEL PEAK 17(7Q31.1) MUTATED        4
  DEL PEAK 17(7Q31.1) WILD-TYPE    137
D44V8, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            64
  CLUS_2                           2                           105
  CLUS_3                           1                            44
  CLUS_4                           3                            62
  CLUS_5                           3                            63
  CLUS_6                           3                            93
  CLUS_7                           4                           137
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        9      0      7
  DEL PEAK 17(7Q31.1) WILD-TYPE    202     95    225
D44V9, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           9                           202
  CLUS_2                           0                            95
  CLUS_3                           7                           225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        6      4      6
  DEL PEAK 17(7Q31.1) WILD-TYPE    222    135    165
D44V10, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           6                           222
  CLUS_2                           4                           135
  CLUS_3                           6                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q31.1) MUTATED        6      2      1
  DEL PEAK 17(7Q31.1) WILD-TYPE     94    107     84
D44V11, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           6                            94
  CLUS_2                           2                           107
  CLUS_3                           1                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q31.1) MUTATED        5      2      1      1      0
  DEL PEAK 17(7Q31.1) WILD-TYPE     77     50     66     32     60
D44V12, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           5                            77
  CLUS_2                           2                            50
  CLUS_3                           1                            66
  CLUS_4                           1                            32
  CLUS_5                           0                            60
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       17     42     37     11
  DEL PEAK 18(8P23.2) WILD-TYPE     26     20     32     30
D45V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          17                            26
  CLUS_2                          42                            20
  CLUS_3                          37                            32
  CLUS_4                          11                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       14     28     36     29
  DEL PEAK 18(8P23.2) WILD-TYPE     35     13     40     20
D45V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          14                            35
  CLUS_2                          28                            13
  CLUS_3                          36                            40
  CLUS_4                          29                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       42    144     82     14
  DEL PEAK 18(8P23.2) WILD-TYPE    193     73     31     21
D45V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          42                           193
  CLUS_2                         144                            73
  CLUS_3                          82                            31
  CLUS_4                          14                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       38     99     37
  DEL PEAK 18(8P23.2) WILD-TYPE     60     56     84
D45V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          38                            60
  CLUS_2                          99                            56
  CLUS_3                          37                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       53     81     18     54
  DEL PEAK 18(8P23.2) WILD-TYPE     44     97     21     83
D45V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          53                            44
  CLUS_2                          81                            97
  CLUS_3                          18                            21
  CLUS_4                          54                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       32    136     38
  DEL PEAK 18(8P23.2) WILD-TYPE     20    166     59
D45V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          32                            20
  CLUS_2                         136                           166
  CLUS_3                          38                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       64     33     80     98
  DEL PEAK 18(8P23.2) WILD-TYPE     63     97     59     90
D45V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          64                            63
  CLUS_2                          33                            97
  CLUS_3                          80                            59
  CLUS_4                          98                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED       28     42      6     34     45     36
  DEL PEAK 18(8P23.2) WILD-TYPE     36     65     39     31     21     60
                               vv
clus                            CLUS_7
  DEL PEAK 18(8P23.2) MUTATED       84
  DEL PEAK 18(8P23.2) WILD-TYPE     57
D45V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          28                            36
  CLUS_2                          42                            65
  CLUS_3                           6                            39
  CLUS_4                          34                            31
  CLUS_5                          45                            21
  CLUS_6                          36                            60
  CLUS_7                          84                            57
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED      107     37    111
  DEL PEAK 18(8P23.2) WILD-TYPE    104     58    121
D45V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         107                           104
  CLUS_2                          37                            58
  CLUS_3                         111                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       98     79     78
  DEL PEAK 18(8P23.2) WILD-TYPE    130     60     93
D45V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          98                           130
  CLUS_2                          79                            60
  CLUS_3                          78                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       61     32     45
  DEL PEAK 18(8P23.2) WILD-TYPE     39     77     40
D45V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          61                            39
  CLUS_2                          32                            77
  CLUS_3                          45                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED       41     32     36     20      9
  DEL PEAK 18(8P23.2) WILD-TYPE     41     20     31     13     51
D45V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          41                            41
  CLUS_2                          32                            20
  CLUS_3                          36                            31
  CLUS_4                          20                            13
  CLUS_5                           9                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 19(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       16     40     41     13
  DEL PEAK 19(8P22) WILD-TYPE     27     22     28     28
D46V1, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        16                          27
  CLUS_2                        40                          22
  CLUS_3                        41                          28
  CLUS_4                        13                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       13     28     40     29
  DEL PEAK 19(8P22) WILD-TYPE     36     13     36     20
D46V2, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        13                          36
  CLUS_2                        28                          13
  CLUS_3                        40                          36
  CLUS_4                        29                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       45    151     85     16
  DEL PEAK 19(8P22) WILD-TYPE    190     66     28     19
D46V3, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        45                         190
  CLUS_2                       151                          66
  CLUS_3                        85                          28
  CLUS_4                        16                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED       40    104     42
  DEL PEAK 19(8P22) WILD-TYPE     58     51     79
D46V4, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        40                          58
  CLUS_2                       104                          51
  CLUS_3                        42                          79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       56     86     20     57
  DEL PEAK 19(8P22) WILD-TYPE     41     92     19     80
D46V5, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        56                          41
  CLUS_2                        86                          92
  CLUS_3                        20                          19
  CLUS_4                        57                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED       35    144     40
  DEL PEAK 19(8P22) WILD-TYPE     17    158     57
D46V6, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        35                          17
  CLUS_2                       144                         158
  CLUS_3                        40                          57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P22) MUTATED       68     38     83    100
  DEL PEAK 19(8P22) WILD-TYPE     59     92     56     88
D46V7, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        68                          59
  CLUS_2                        38                          92
  CLUS_3                        83                          56
  CLUS_4                       100                          88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 19(8P22) MUTATED       31     45      6     37     47     36     87
  DEL PEAK 19(8P22) WILD-TYPE     33     62     39     28     19     60     54
D46V8, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        31                          33
  CLUS_2                        45                          62
  CLUS_3                         6                          39
  CLUS_4                        37                          28
  CLUS_5                        47                          19
  CLUS_6                        36                          60
  CLUS_7                        87                          54
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED      112     41    116
  DEL PEAK 19(8P22) WILD-TYPE     99     54    116
D46V9, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                       112                          99
  CLUS_2                        41                          54
  CLUS_3                       116                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED      106     83     80
  DEL PEAK 19(8P22) WILD-TYPE    122     56     91
D46V10, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                       106                         122
  CLUS_2                        83                          56
  CLUS_3                        80                          91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P22) MUTATED       63     36     49
  DEL PEAK 19(8P22) WILD-TYPE     37     73     36
D46V11, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        63                          37
  CLUS_2                        36                          73
  CLUS_3                        49                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P22) MUTATED       43     35     40     21      9
  DEL PEAK 19(8P22) WILD-TYPE     39     17     27     12     51
D46V12, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        43                          39
  CLUS_2                        35                          17
  CLUS_3                        40                          27
  CLUS_4                        21                          12
  CLUS_5                         9                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 20(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P11.21) MUTATED       11     21     20      4
  DEL PEAK 20(8P11.21) WILD-TYPE     32     41     49     37
D47V1, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           11                             32
  CLUS_2                           21                             41
  CLUS_3                           20                             49
  CLUS_4                            4                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P11.21) MUTATED        5     14     28      9
  DEL PEAK 20(8P11.21) WILD-TYPE     44     27     48     40
D47V2, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                           14                             27
  CLUS_3                           28                             48
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P11.21) MUTATED       26     75     20      9
  DEL PEAK 20(8P11.21) WILD-TYPE    209    142     93     26
D47V3, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           26                            209
  CLUS_2                           75                            142
  CLUS_3                           20                             93
  CLUS_4                            9                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P11.21) MUTATED       18     40     16
  DEL PEAK 20(8P11.21) WILD-TYPE     80    115    105
D47V4, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           18                             80
  CLUS_2                           40                            115
  CLUS_3                           16                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P11.21) MUTATED       20     47      9     20
  DEL PEAK 20(8P11.21) WILD-TYPE     77    131     30    117
D47V5, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           20                             77
  CLUS_2                           47                            131
  CLUS_3                            9                             30
  CLUS_4                           20                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P11.21) MUTATED       13     70     13
  DEL PEAK 20(8P11.21) WILD-TYPE     39    232     84
D47V6, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           70                            232
  CLUS_3                           13                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(8P11.21) MUTATED       27     13     30     56
  DEL PEAK 20(8P11.21) WILD-TYPE    100    117    109    132
D47V7, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           27                            100
  CLUS_2                           13                            117
  CLUS_3                           30                            109
  CLUS_4                           56                            132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(8P11.21) MUTATED       13     13      2     17     16     23
  DEL PEAK 20(8P11.21) WILD-TYPE     51     94     43     48     50     73
                                vv
clus                             CLUS_7
  DEL PEAK 20(8P11.21) MUTATED       42
  DEL PEAK 20(8P11.21) WILD-TYPE     99
D47V8, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           13                             94
  CLUS_3                            2                             43
  CLUS_4                           17                             48
  CLUS_5                           16                             50
  CLUS_6                           23                             73
  CLUS_7                           42                             99
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P11.21) MUTATED       41     17     59
  DEL PEAK 20(8P11.21) WILD-TYPE    170     78    173
D47V9, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           41                            170
  CLUS_2                           17                             78
  CLUS_3                           59                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P11.21) MUTATED       37     43     37
  DEL PEAK 20(8P11.21) WILD-TYPE    191     96    134
D47V10, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           37                            191
  CLUS_2                           43                             96
  CLUS_3                           37                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(8P11.21) MUTATED       20     17     19
  DEL PEAK 20(8P11.21) WILD-TYPE     80     92     66
D47V11, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           20                             80
  CLUS_2                           17                             92
  CLUS_3                           19                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(8P11.21) MUTATED       15     11     15     10      5
  DEL PEAK 20(8P11.21) WILD-TYPE     67     41     52     23     55
D47V12, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           15                             67
  CLUS_2                           11                             41
  CLUS_3                           15                             52
  CLUS_4                           10                             23
  CLUS_5                            5                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 21(8Q11.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        4     10      8      3
  DEL PEAK 21(8Q11.1) WILD-TYPE     39     52     61     38
D48V1, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           4                            39
  CLUS_2                          10                            52
  CLUS_3                           8                            61
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        4      9      8      4
  DEL PEAK 21(8Q11.1) WILD-TYPE     45     32     68     45
D48V2, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           4                            45
  CLUS_2                           9                            32
  CLUS_3                           8                            68
  CLUS_4                           4                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED       10     31      1      4
  DEL PEAK 21(8Q11.1) WILD-TYPE    225    186    112     31
D48V3, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          10                           225
  CLUS_2                          31                           186
  CLUS_3                           1                           112
  CLUS_4                           4                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        4     13      6
  DEL PEAK 21(8Q11.1) WILD-TYPE     94    142    115
D48V4, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           4                            94
  CLUS_2                          13                           142
  CLUS_3                           6                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED        8     18      3      6
  DEL PEAK 21(8Q11.1) WILD-TYPE     89    160     36    131
D48V5, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           8                            89
  CLUS_2                          18                           160
  CLUS_3                           3                            36
  CLUS_4                           6                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        5     26      4
  DEL PEAK 21(8Q11.1) WILD-TYPE     47    276     93
D48V6, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           5                            47
  CLUS_2                          26                           276
  CLUS_3                           4                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(8Q11.1) MUTATED       10      5     11     18
  DEL PEAK 21(8Q11.1) WILD-TYPE    117    125    128    170
D48V7, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          10                           117
  CLUS_2                           5                           125
  CLUS_3                          11                           128
  CLUS_4                          18                           170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(8Q11.1) MUTATED        4      2      2      5      4     12
  DEL PEAK 21(8Q11.1) WILD-TYPE     60    105     43     60     62     84
                               vv
clus                            CLUS_7
  DEL PEAK 21(8Q11.1) MUTATED       15
  DEL PEAK 21(8Q11.1) WILD-TYPE    126
D48V8, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           2                           105
  CLUS_3                           2                            43
  CLUS_4                           5                            60
  CLUS_5                           4                            62
  CLUS_6                          12                            84
  CLUS_7                          15                           126
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED       14      5     25
  DEL PEAK 21(8Q11.1) WILD-TYPE    197     90    207
D48V9, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          14                           197
  CLUS_2                           5                            90
  CLUS_3                          25                           207
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED       12     14     18
  DEL PEAK 21(8Q11.1) WILD-TYPE    216    125    153
D48V10, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          12                           216
  CLUS_2                          14                           125
  CLUS_3                          18                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(8Q11.1) MUTATED        6      5      7
  DEL PEAK 21(8Q11.1) WILD-TYPE     94    104     78
D48V11, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           6                            94
  CLUS_2                           5                           104
  CLUS_3                           7                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(8Q11.1) MUTATED        4      3      6      3      2
  DEL PEAK 21(8Q11.1) WILD-TYPE     78     49     61     30     58
D48V12, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           4                            78
  CLUS_2                           3                            49
  CLUS_3                           6                            61
  CLUS_4                           3                            30
  CLUS_5                           2                            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 22(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P24.2) MUTATED        3      8     13      3
  DEL PEAK 22(9P24.2) WILD-TYPE     40     54     56     38
D49V1, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           3                            40
  CLUS_2                           8                            54
  CLUS_3                          13                            56
  CLUS_4                           3                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P24.2) MUTATED        3      6      9      9
  DEL PEAK 22(9P24.2) WILD-TYPE     46     35     67     40
D49V2, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           3                            46
  CLUS_2                           6                            35
  CLUS_3                           9                            67
  CLUS_4                           9                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P24.2) MUTATED       16     44     14      7
  DEL PEAK 22(9P24.2) WILD-TYPE    219    173     99     28
D49V3, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          16                           219
  CLUS_2                          44                           173
  CLUS_3                          14                            99
  CLUS_4                           7                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P24.2) MUTATED       14     29     12
  DEL PEAK 22(9P24.2) WILD-TYPE     84    126    109
D49V4, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          14                            84
  CLUS_2                          29                           126
  CLUS_3                          12                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P24.2) MUTATED       12     28      7     16
  DEL PEAK 22(9P24.2) WILD-TYPE     85    150     32    121
D49V5, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          12                            85
  CLUS_2                          28                           150
  CLUS_3                           7                            32
  CLUS_4                          16                           121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P24.2) MUTATED        7     43     13
  DEL PEAK 22(9P24.2) WILD-TYPE     45    259     84
D49V6, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          43                           259
  CLUS_3                          13                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9P24.2) MUTATED       20      9     30     21
  DEL PEAK 22(9P24.2) WILD-TYPE    107    121    109    167
D49V7, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          20                           107
  CLUS_2                           9                           121
  CLUS_3                          30                           109
  CLUS_4                          21                           167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9P24.2) MUTATED        9     16      3      9     14      3
  DEL PEAK 22(9P24.2) WILD-TYPE     55     91     42     56     52     93
                               vv
clus                            CLUS_7
  DEL PEAK 22(9P24.2) MUTATED       26
  DEL PEAK 22(9P24.2) WILD-TYPE    115
D49V8, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           9                            55
  CLUS_2                          16                            91
  CLUS_3                           3                            42
  CLUS_4                           9                            56
  CLUS_5                          14                            52
  CLUS_6                           3                            93
  CLUS_7                          26                           115
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P24.2) MUTATED       37     11     28
  DEL PEAK 22(9P24.2) WILD-TYPE    174     84    204
D49V9, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          37                           174
  CLUS_2                          11                            84
  CLUS_3                          28                           204
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P24.2) MUTATED       30     29     17
  DEL PEAK 22(9P24.2) WILD-TYPE    198    110    154
D49V10, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          30                           198
  CLUS_2                          29                           110
  CLUS_3                          17                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9P24.2) MUTATED       21     10     16
  DEL PEAK 22(9P24.2) WILD-TYPE     79     99     69
D49V11, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          21                            79
  CLUS_2                          10                            99
  CLUS_3                          16                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9P24.2) MUTATED       11     13     10      8      5
  DEL PEAK 22(9P24.2) WILD-TYPE     71     39     57     25     55
D49V12, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          11                            71
  CLUS_2                          13                            39
  CLUS_3                          10                            57
  CLUS_4                           8                            25
  CLUS_5                           5                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 23(10Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED        7     12     21      5
  DEL PEAK 23(10Q21.1) WILD-TYPE     36     50     48     36
D50V1, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            7                             36
  CLUS_2                           12                             50
  CLUS_3                           21                             48
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED        6      8     16     15
  DEL PEAK 23(10Q21.1) WILD-TYPE     43     33     60     34
D50V2, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                            6                             43
  CLUS_2                            8                             33
  CLUS_3                           16                             60
  CLUS_4                           15                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       20     56     34     18
  DEL PEAK 23(10Q21.1) WILD-TYPE    215    161     79     17
D50V3, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           20                            215
  CLUS_2                           56                            161
  CLUS_3                           34                             79
  CLUS_4                           18                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       17     46     20
  DEL PEAK 23(10Q21.1) WILD-TYPE     81    109    101
D50V4, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           17                             81
  CLUS_2                           46                            109
  CLUS_3                           20                            101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       21     41     13     21
  DEL PEAK 23(10Q21.1) WILD-TYPE     76    137     26    116
D50V5, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           21                             76
  CLUS_2                           41                            137
  CLUS_3                           13                             26
  CLUS_4                           21                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       13     70     13
  DEL PEAK 23(10Q21.1) WILD-TYPE     39    232     84
D50V6, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           70                            232
  CLUS_3                           13                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q21.1) MUTATED       25     12     47     41
  DEL PEAK 23(10Q21.1) WILD-TYPE    102    118     92    147
D50V7, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           25                            102
  CLUS_2                           12                            118
  CLUS_3                           47                             92
  CLUS_4                           41                            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q21.1) MUTATED       12     19      3     16     24     15
  DEL PEAK 23(10Q21.1) WILD-TYPE     52     88     42     49     42     81
                                vv
clus                             CLUS_7
  DEL PEAK 23(10Q21.1) MUTATED       36
  DEL PEAK 23(10Q21.1) WILD-TYPE    105
D50V8, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                           19                             88
  CLUS_3                            3                             42
  CLUS_4                           16                             49
  CLUS_5                           24                             42
  CLUS_6                           15                             81
  CLUS_7                           36                            105
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       49     18     48
  DEL PEAK 23(10Q21.1) WILD-TYPE    162     77    184
D50V9, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           49                            162
  CLUS_2                           18                             77
  CLUS_3                           48                            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       45     37     33
  DEL PEAK 23(10Q21.1) WILD-TYPE    183    102    138
D50V10, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           45                            183
  CLUS_2                           37                            102
  CLUS_3                           33                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q21.1) MUTATED       30     13     21
  DEL PEAK 23(10Q21.1) WILD-TYPE     70     96     64
D50V11, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           30                             70
  CLUS_2                           13                             96
  CLUS_3                           21                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q21.1) MUTATED       18     15     19      7      5
  DEL PEAK 23(10Q21.1) WILD-TYPE     64     37     48     26     55
D50V12, multiclass
        clus
vv       DEL PEAK 23(10Q21.1) MUTATED DEL PEAK 23(10Q21.1) WILD-TYPE
  CLUS_1                           18                             64
  CLUS_2                           15                             37
  CLUS_3                           19                             48
  CLUS_4                            7                             26
  CLUS_5                            5                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 24(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED        8     10     23      9
  DEL PEAK 24(10Q23.31) WILD-TYPE     35     52     46     32
D51V1, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             8                              35
  CLUS_2                            10                              52
  CLUS_3                            23                              46
  CLUS_4                             9                              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED        9      6     20     15
  DEL PEAK 24(10Q23.31) WILD-TYPE     40     35     56     34
D51V2, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                             9                              40
  CLUS_2                             6                              35
  CLUS_3                            20                              56
  CLUS_4                            15                              34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       31     64     40     21
  DEL PEAK 24(10Q23.31) WILD-TYPE    204    153     73     14
D51V3, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            31                             204
  CLUS_2                            64                             153
  CLUS_3                            40                              73
  CLUS_4                            21                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       22     54     28
  DEL PEAK 24(10Q23.31) WILD-TYPE     76    101     93
D51V4, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            22                              76
  CLUS_2                            54                             101
  CLUS_3                            28                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       26     46     16     28
  DEL PEAK 24(10Q23.31) WILD-TYPE     71    132     23    109
D51V5, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            26                              71
  CLUS_2                            46                             132
  CLUS_3                            16                              23
  CLUS_4                            28                             109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       14     83     19
  DEL PEAK 24(10Q23.31) WILD-TYPE     38    219     78
D51V6, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            14                              38
  CLUS_2                            83                             219
  CLUS_3                            19                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(10Q23.31) MUTATED       32     21     54     44
  DEL PEAK 24(10Q23.31) WILD-TYPE     95    109     85    144
D51V7, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            32                              95
  CLUS_2                            21                             109
  CLUS_3                            54                              85
  CLUS_4                            44                             144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(10Q23.31) MUTATED       11     27      4     21     32     23
  DEL PEAK 24(10Q23.31) WILD-TYPE     53     80     41     44     34     73
                                 vv
clus                              CLUS_7
  DEL PEAK 24(10Q23.31) MUTATED       33
  DEL PEAK 24(10Q23.31) WILD-TYPE    108
D51V8, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            11                              53
  CLUS_2                            27                              80
  CLUS_3                             4                              41
  CLUS_4                            21                              44
  CLUS_5                            32                              34
  CLUS_6                            23                              73
  CLUS_7                            33                             108
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       60     25     55
  DEL PEAK 24(10Q23.31) WILD-TYPE    151     70    177
D51V9, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            60                             151
  CLUS_2                            25                              70
  CLUS_3                            55                             177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       56     45     39
  DEL PEAK 24(10Q23.31) WILD-TYPE    172     94    132
D51V10, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            56                             172
  CLUS_2                            45                              94
  CLUS_3                            39                             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(10Q23.31) MUTATED       35     14     31
  DEL PEAK 24(10Q23.31) WILD-TYPE     65     95     54
D51V11, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            35                              65
  CLUS_2                            14                              95
  CLUS_3                            31                              54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(10Q23.31) MUTATED       21     21     26      7      5
  DEL PEAK 24(10Q23.31) WILD-TYPE     61     31     41     26     55
D51V12, multiclass
        clus
vv       DEL PEAK 24(10Q23.31) MUTATED DEL PEAK 24(10Q23.31) WILD-TYPE
  CLUS_1                            21                              61
  CLUS_2                            21                              31
  CLUS_3                            26                              41
  CLUS_4                             7                              26
  CLUS_5                             5                              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 25(10Q25.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED        8     13     23      8
  DEL PEAK 25(10Q25.2) WILD-TYPE     35     49     46     33
D52V1, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           13                             49
  CLUS_3                           23                             46
  CLUS_4                            8                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED        8      8     21     15
  DEL PEAK 25(10Q25.2) WILD-TYPE     41     33     55     34
D52V2, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                            8                             41
  CLUS_2                            8                             33
  CLUS_3                           21                             55
  CLUS_4                           15                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED       30     65     34     23
  DEL PEAK 25(10Q25.2) WILD-TYPE    205    152     79     12
D52V3, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           30                            205
  CLUS_2                           65                            152
  CLUS_3                           34                             79
  CLUS_4                           23                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       22     52     23
  DEL PEAK 25(10Q25.2) WILD-TYPE     76    103     98
D52V4, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           22                             76
  CLUS_2                           52                            103
  CLUS_3                           23                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED       30     46     17     24
  DEL PEAK 25(10Q25.2) WILD-TYPE     67    132     22    113
D52V5, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           30                             67
  CLUS_2                           46                            132
  CLUS_3                           17                             22
  CLUS_4                           24                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       13     86     18
  DEL PEAK 25(10Q25.2) WILD-TYPE     39    216     79
D52V6, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           86                            216
  CLUS_3                           18                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(10Q25.2) MUTATED       32     14     49     51
  DEL PEAK 25(10Q25.2) WILD-TYPE     95    116     90    137
D52V7, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           32                             95
  CLUS_2                           14                            116
  CLUS_3                           49                             90
  CLUS_4                           51                            137
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(10Q25.2) MUTATED       11     18      2     19     33     28
  DEL PEAK 25(10Q25.2) WILD-TYPE     53     89     43     46     33     68
                                vv
clus                             CLUS_7
  DEL PEAK 25(10Q25.2) MUTATED       35
  DEL PEAK 25(10Q25.2) WILD-TYPE    106
D52V8, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           18                             89
  CLUS_3                            2                             43
  CLUS_4                           19                             46
  CLUS_5                           33                             33
  CLUS_6                           28                             68
  CLUS_7                           35                            106
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       54     24     58
  DEL PEAK 25(10Q25.2) WILD-TYPE    157     71    174
D52V9, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           54                            157
  CLUS_2                           24                             71
  CLUS_3                           58                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       50     42     44
  DEL PEAK 25(10Q25.2) WILD-TYPE    178     97    127
D52V10, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           50                            178
  CLUS_2                           42                             97
  CLUS_3                           44                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(10Q25.2) MUTATED       32     12     27
  DEL PEAK 25(10Q25.2) WILD-TYPE     68     97     58
D52V11, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           32                             68
  CLUS_2                           12                             97
  CLUS_3                           27                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(10Q25.2) MUTATED       19     20     23      5      4
  DEL PEAK 25(10Q25.2) WILD-TYPE     63     32     44     28     56
D52V12, multiclass
        clus
vv       DEL PEAK 25(10Q25.2) MUTATED DEL PEAK 25(10Q25.2) WILD-TYPE
  CLUS_1                           19                             63
  CLUS_2                           20                             32
  CLUS_3                           23                             44
  CLUS_4                            5                             28
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 26(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED        6      9     17      9
  DEL PEAK 26(11Q22.3) WILD-TYPE     37     53     52     32
D53V1, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                            6                             37
  CLUS_2                            9                             53
  CLUS_3                           17                             52
  CLUS_4                            9                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED        7      5     20      9
  DEL PEAK 26(11Q22.3) WILD-TYPE     42     36     56     40
D53V2, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                            7                             42
  CLUS_2                            5                             36
  CLUS_3                           20                             56
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED       30     51     23      7
  DEL PEAK 26(11Q22.3) WILD-TYPE    205    166     90     28
D53V3, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           30                            205
  CLUS_2                           51                            166
  CLUS_3                           23                             90
  CLUS_4                            7                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       23     30     16
  DEL PEAK 26(11Q22.3) WILD-TYPE     75    125    105
D53V4, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           23                             75
  CLUS_2                           30                            125
  CLUS_3                           16                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED       14     32     11     21
  DEL PEAK 26(11Q22.3) WILD-TYPE     83    146     28    116
D53V5, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           14                             83
  CLUS_2                           32                            146
  CLUS_3                           11                             28
  CLUS_4                           21                            116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED        9     53     16
  DEL PEAK 26(11Q22.3) WILD-TYPE     43    249     81
D53V6, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                           53                            249
  CLUS_3                           16                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q22.3) MUTATED       22     22     24     39
  DEL PEAK 26(11Q22.3) WILD-TYPE    105    108    115    149
D53V7, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           22                            105
  CLUS_2                           22                            108
  CLUS_3                           24                            115
  CLUS_4                           39                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q22.3) MUTATED       11     20      4     12     10     20
  DEL PEAK 26(11Q22.3) WILD-TYPE     53     87     41     53     56     76
                                vv
clus                             CLUS_7
  DEL PEAK 26(11Q22.3) MUTATED       30
  DEL PEAK 26(11Q22.3) WILD-TYPE    111
D53V8, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           20                             87
  CLUS_3                            4                             41
  CLUS_4                           12                             53
  CLUS_5                           10                             56
  CLUS_6                           20                             76
  CLUS_7                           30                            111
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       38     18     47
  DEL PEAK 26(11Q22.3) WILD-TYPE    173     77    185
D53V9, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           38                            173
  CLUS_2                           18                             77
  CLUS_3                           47                            185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       42     23     38
  DEL PEAK 26(11Q22.3) WILD-TYPE    186    116    133
D53V10, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           42                            186
  CLUS_2                           23                            116
  CLUS_3                           38                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q22.3) MUTATED       21     14     17
  DEL PEAK 26(11Q22.3) WILD-TYPE     79     95     68
D53V11, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           21                             79
  CLUS_2                           14                             95
  CLUS_3                           17                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q22.3) MUTATED       17      9     16      4      6
  DEL PEAK 26(11Q22.3) WILD-TYPE     65     43     51     29     54
D53V12, multiclass
        clus
vv       DEL PEAK 26(11Q22.3) MUTATED DEL PEAK 26(11Q22.3) WILD-TYPE
  CLUS_1                           17                             65
  CLUS_2                            9                             43
  CLUS_3                           16                             51
  CLUS_4                            4                             29
  CLUS_5                            6                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 27(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED        2     14     11      1
  DEL PEAK 27(12P13.1) WILD-TYPE     41     48     58     40
D54V1, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            2                             41
  CLUS_2                           14                             48
  CLUS_3                           11                             58
  CLUS_4                            1                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED        0      9     10      9
  DEL PEAK 27(12P13.1) WILD-TYPE     49     32     66     40
D54V2, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            0                             49
  CLUS_2                            9                             32
  CLUS_3                           10                             66
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED        9     52     20      9
  DEL PEAK 27(12P13.1) WILD-TYPE    226    165     93     26
D54V3, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            9                            226
  CLUS_2                           52                            165
  CLUS_3                           20                             93
  CLUS_4                            9                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       12     36     16
  DEL PEAK 27(12P13.1) WILD-TYPE     86    119    105
D54V4, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           12                             86
  CLUS_2                           36                            119
  CLUS_3                           16                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED       15     26      7     19
  DEL PEAK 27(12P13.1) WILD-TYPE     82    152     32    118
D54V5, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           15                             82
  CLUS_2                           26                            152
  CLUS_3                            7                             32
  CLUS_4                           19                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED        5     49     13
  DEL PEAK 27(12P13.1) WILD-TYPE     47    253     84
D54V6, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            5                             47
  CLUS_2                           49                            253
  CLUS_3                           13                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12P13.1) MUTATED       19     12     28     27
  DEL PEAK 27(12P13.1) WILD-TYPE    108    118    111    161
D54V7, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           19                            108
  CLUS_2                           12                            118
  CLUS_3                           28                            111
  CLUS_4                           27                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12P13.1) MUTATED        7     18      1     14     13      8
  DEL PEAK 27(12P13.1) WILD-TYPE     57     89     44     51     53     88
                                vv
clus                             CLUS_7
  DEL PEAK 27(12P13.1) MUTATED       25
  DEL PEAK 27(12P13.1) WILD-TYPE    116
D54V8, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                            7                             57
  CLUS_2                           18                             89
  CLUS_3                            1                             44
  CLUS_4                           14                             51
  CLUS_5                           13                             53
  CLUS_6                            8                             88
  CLUS_7                           25                            116
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       35     15     32
  DEL PEAK 27(12P13.1) WILD-TYPE    176     80    200
D54V9, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           35                            176
  CLUS_2                           15                             80
  CLUS_3                           32                            200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       33     24     25
  DEL PEAK 27(12P13.1) WILD-TYPE    195    115    146
D54V10, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           33                            195
  CLUS_2                           24                            115
  CLUS_3                           25                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12P13.1) MUTATED       20      8     19
  DEL PEAK 27(12P13.1) WILD-TYPE     80    101     66
D54V11, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           20                             80
  CLUS_2                            8                            101
  CLUS_3                           19                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12P13.1) MUTATED       14     13     15      4      1
  DEL PEAK 27(12P13.1) WILD-TYPE     68     39     52     29     59
D54V12, multiclass
        clus
vv       DEL PEAK 27(12P13.1) MUTATED DEL PEAK 27(12P13.1) WILD-TYPE
  CLUS_1                           14                             68
  CLUS_2                           13                             39
  CLUS_3                           15                             52
  CLUS_4                            4                             29
  CLUS_5                            1                             59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 28(12Q21.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED        4     15     12      2
  DEL PEAK 28(12Q21.33) WILD-TYPE     39     47     57     39
D55V1, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                             4                              39
  CLUS_2                            15                              47
  CLUS_3                            12                              57
  CLUS_4                             2                              39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED        3     10      9     11
  DEL PEAK 28(12Q21.33) WILD-TYPE     46     31     67     38
D55V2, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                             3                              46
  CLUS_2                            10                              31
  CLUS_3                             9                              67
  CLUS_4                            11                              38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED       11     48     19     10
  DEL PEAK 28(12Q21.33) WILD-TYPE    224    169     94     25
D55V3, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            11                             224
  CLUS_2                            48                             169
  CLUS_3                            19                              94
  CLUS_4                            10                              25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       13     32     11
  DEL PEAK 28(12Q21.33) WILD-TYPE     85    123    110
D55V4, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            13                              85
  CLUS_2                            32                             123
  CLUS_3                            11                             110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED       17     21      6     17
  DEL PEAK 28(12Q21.33) WILD-TYPE     80    157     33    120
D55V5, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            17                              80
  CLUS_2                            21                             157
  CLUS_3                             6                              33
  CLUS_4                            17                             120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED        8     40     13
  DEL PEAK 28(12Q21.33) WILD-TYPE     44    262     84
D55V6, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                             8                              44
  CLUS_2                            40                             262
  CLUS_3                            13                              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q21.33) MUTATED       17     11     28     30
  DEL PEAK 28(12Q21.33) WILD-TYPE    110    119    111    158
D55V7, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            17                             110
  CLUS_2                            11                             119
  CLUS_3                            28                             111
  CLUS_4                            30                             158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q21.33) MUTATED        6     13      2     12     17      9
  DEL PEAK 28(12Q21.33) WILD-TYPE     58     94     43     53     49     87
                                 vv
clus                              CLUS_7
  DEL PEAK 28(12Q21.33) MUTATED       27
  DEL PEAK 28(12Q21.33) WILD-TYPE    114
D55V8, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                             6                              58
  CLUS_2                            13                              94
  CLUS_3                             2                              43
  CLUS_4                            12                              53
  CLUS_5                            17                              49
  CLUS_6                             9                              87
  CLUS_7                            27                             114
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       32     12     32
  DEL PEAK 28(12Q21.33) WILD-TYPE    179     83    200
D55V9, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            32                             179
  CLUS_2                            12                              83
  CLUS_3                            32                             200
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       30     22     24
  DEL PEAK 28(12Q21.33) WILD-TYPE    198    117    147
D55V10, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            30                             198
  CLUS_2                            22                             117
  CLUS_3                            24                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q21.33) MUTATED       15      8     18
  DEL PEAK 28(12Q21.33) WILD-TYPE     85    101     67
D55V11, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            15                              85
  CLUS_2                             8                             101
  CLUS_3                            18                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q21.33) MUTATED       13      7     14      5      2
  DEL PEAK 28(12Q21.33) WILD-TYPE     69     45     53     28     58
D55V12, multiclass
        clus
vv       DEL PEAK 28(12Q21.33) MUTATED DEL PEAK 28(12Q21.33) WILD-TYPE
  CLUS_1                            13                              69
  CLUS_2                             7                              45
  CLUS_3                            14                              53
  CLUS_4                             5                              28
  CLUS_5                             2                              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 29(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED        8     31     34      6
  DEL PEAK 29(14Q11.2) WILD-TYPE     35     31     35     35
D56V1, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           31                             31
  CLUS_3                           34                             35
  CLUS_4                            6                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED        5     21     28     25
  DEL PEAK 29(14Q11.2) WILD-TYPE     44     20     48     24
D56V2, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                           21                             20
  CLUS_3                           28                             48
  CLUS_4                           25                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED       27    144     20     13
  DEL PEAK 29(14Q11.2) WILD-TYPE    208     73     93     22
D56V3, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           27                            208
  CLUS_2                          144                             73
  CLUS_3                           20                             93
  CLUS_4                           13                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       29     71     24
  DEL PEAK 29(14Q11.2) WILD-TYPE     69     84     97
D56V4, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           29                             69
  CLUS_2                           71                             84
  CLUS_3                           24                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED       35     74     13     32
  DEL PEAK 29(14Q11.2) WILD-TYPE     62    104     26    105
D56V5, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           35                             62
  CLUS_2                           74                            104
  CLUS_3                           13                             26
  CLUS_4                           32                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       19    110     25
  DEL PEAK 29(14Q11.2) WILD-TYPE     33    192     72
D56V6, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           19                             33
  CLUS_2                          110                            192
  CLUS_3                           25                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(14Q11.2) MUTATED       28     21     73     75
  DEL PEAK 29(14Q11.2) WILD-TYPE     99    109     66    113
D56V7, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           28                             99
  CLUS_2                           21                            109
  CLUS_3                           73                             66
  CLUS_4                           75                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(14Q11.2) MUTATED       11     36      3     29     33     15
  DEL PEAK 29(14Q11.2) WILD-TYPE     53     71     42     36     33     81
                                vv
clus                             CLUS_7
  DEL PEAK 29(14Q11.2) MUTATED       70
  DEL PEAK 29(14Q11.2) WILD-TYPE     71
D56V8, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           36                             71
  CLUS_3                            3                             42
  CLUS_4                           29                             36
  CLUS_5                           33                             33
  CLUS_6                           15                             81
  CLUS_7                           70                             71
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       82     24     76
  DEL PEAK 29(14Q11.2) WILD-TYPE    129     71    156
D56V9, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           82                            129
  CLUS_2                           24                             71
  CLUS_3                           76                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       72     57     53
  DEL PEAK 29(14Q11.2) WILD-TYPE    156     82    118
D56V10, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           72                            156
  CLUS_2                           57                             82
  CLUS_3                           53                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(14Q11.2) MUTATED       49     17     32
  DEL PEAK 29(14Q11.2) WILD-TYPE     51     92     53
D56V11, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           49                             51
  CLUS_2                           17                             92
  CLUS_3                           32                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(14Q11.2) MUTATED       31     22     28     15      2
  DEL PEAK 29(14Q11.2) WILD-TYPE     51     30     39     18     58
D56V12, multiclass
        clus
vv       DEL PEAK 29(14Q11.2) MUTATED DEL PEAK 29(14Q11.2) WILD-TYPE
  CLUS_1                           31                             51
  CLUS_2                           22                             30
  CLUS_3                           28                             39
  CLUS_4                           15                             18
  CLUS_5                            2                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 30(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED       11     31     34      7
  DEL PEAK 30(14Q31.1) WILD-TYPE     32     31     35     34
D57V1, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           11                             32
  CLUS_2                           31                             31
  CLUS_3                           34                             35
  CLUS_4                            7                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED        8     21     28     26
  DEL PEAK 30(14Q31.1) WILD-TYPE     41     20     48     23
D57V2, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                            8                             41
  CLUS_2                           21                             20
  CLUS_3                           28                             48
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED       31    145     21     14
  DEL PEAK 30(14Q31.1) WILD-TYPE    204     72     92     21
D57V3, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           31                            204
  CLUS_2                          145                             72
  CLUS_3                           21                             92
  CLUS_4                           14                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       28     73     26
  DEL PEAK 30(14Q31.1) WILD-TYPE     70     82     95
D57V4, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           28                             70
  CLUS_2                           73                             82
  CLUS_3                           26                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED       38     77     13     31
  DEL PEAK 30(14Q31.1) WILD-TYPE     59    101     26    106
D57V5, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           38                             59
  CLUS_2                           77                            101
  CLUS_3                           13                             26
  CLUS_4                           31                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       20    113     26
  DEL PEAK 30(14Q31.1) WILD-TYPE     32    189     71
D57V6, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           20                             32
  CLUS_2                          113                            189
  CLUS_3                           26                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(14Q31.1) MUTATED       30     22     73     79
  DEL PEAK 30(14Q31.1) WILD-TYPE     97    108     66    109
D57V7, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           30                             97
  CLUS_2                           22                            108
  CLUS_3                           73                             66
  CLUS_4                           79                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(14Q31.1) MUTATED       12     38      5     26     32     19
  DEL PEAK 30(14Q31.1) WILD-TYPE     52     69     40     39     34     77
                                vv
clus                             CLUS_7
  DEL PEAK 30(14Q31.1) MUTATED       72
  DEL PEAK 30(14Q31.1) WILD-TYPE     69
D57V8, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                           38                             69
  CLUS_3                            5                             40
  CLUS_4                           26                             39
  CLUS_5                           32                             34
  CLUS_6                           19                             77
  CLUS_7                           72                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       80     27     82
  DEL PEAK 30(14Q31.1) WILD-TYPE    131     68    150
D57V9, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           80                            131
  CLUS_2                           27                             68
  CLUS_3                           82                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       72     59     58
  DEL PEAK 30(14Q31.1) WILD-TYPE    156     80    113
D57V10, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           72                            156
  CLUS_2                           59                             80
  CLUS_3                           58                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(14Q31.1) MUTATED       50     16     32
  DEL PEAK 30(14Q31.1) WILD-TYPE     50     93     53
D57V11, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           50                             50
  CLUS_2                           16                             93
  CLUS_3                           32                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(14Q31.1) MUTATED       29     22     29     15      3
  DEL PEAK 30(14Q31.1) WILD-TYPE     53     30     38     18     57
D57V12, multiclass
        clus
vv       DEL PEAK 30(14Q31.1) MUTATED DEL PEAK 30(14Q31.1) WILD-TYPE
  CLUS_1                           29                             53
  CLUS_2                           22                             30
  CLUS_3                           29                             38
  CLUS_4                           15                             18
  CLUS_5                            3                             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 31(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       11     31     34      7
  DEL PEAK 31(14Q31.1) WILD-TYPE     32     31     35     34
D58V1, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           11                             32
  CLUS_2                           31                             31
  CLUS_3                           34                             35
  CLUS_4                            7                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED        8     21     28     26
  DEL PEAK 31(14Q31.1) WILD-TYPE     41     20     48     23
D58V2, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                            8                             41
  CLUS_2                           21                             20
  CLUS_3                           28                             48
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       32    146     20     14
  DEL PEAK 31(14Q31.1) WILD-TYPE    203     71     93     21
D58V3, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           32                            203
  CLUS_2                          146                             71
  CLUS_3                           20                             93
  CLUS_4                           14                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED       28     73     27
  DEL PEAK 31(14Q31.1) WILD-TYPE     70     82     94
D58V4, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           28                             70
  CLUS_2                           73                             82
  CLUS_3                           27                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       38     78     13     31
  DEL PEAK 31(14Q31.1) WILD-TYPE     59    100     26    106
D58V5, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           38                             59
  CLUS_2                           78                            100
  CLUS_3                           13                             26
  CLUS_4                           31                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED       20    114     26
  DEL PEAK 31(14Q31.1) WILD-TYPE     32    188     71
D58V6, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           20                             32
  CLUS_2                          114                            188
  CLUS_3                           26                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q31.1) MUTATED       30     23     73     79
  DEL PEAK 31(14Q31.1) WILD-TYPE     97    107     66    109
D58V7, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           30                             97
  CLUS_2                           23                            107
  CLUS_3                           73                             66
  CLUS_4                           79                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q31.1) MUTATED       12     39      5     27     31     19
  DEL PEAK 31(14Q31.1) WILD-TYPE     52     68     40     38     35     77
                                vv
clus                             CLUS_7
  DEL PEAK 31(14Q31.1) MUTATED       72
  DEL PEAK 31(14Q31.1) WILD-TYPE     69
D58V8, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                           39                             68
  CLUS_3                            5                             40
  CLUS_4                           27                             38
  CLUS_5                           31                             35
  CLUS_6                           19                             77
  CLUS_7                           72                             69
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED       82     27     82
  DEL PEAK 31(14Q31.1) WILD-TYPE    129     68    150
D58V9, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           82                            129
  CLUS_2                           27                             68
  CLUS_3                           82                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED       73     60     58
  DEL PEAK 31(14Q31.1) WILD-TYPE    155     79    113
D58V10, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           73                            155
  CLUS_2                           60                             79
  CLUS_3                           58                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q31.1) MUTATED       51     17     32
  DEL PEAK 31(14Q31.1) WILD-TYPE     49     92     53
D58V11, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           51                             49
  CLUS_2                           17                             92
  CLUS_3                           32                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q31.1) MUTATED       29     23     29     15      4
  DEL PEAK 31(14Q31.1) WILD-TYPE     53     29     38     18     56
D58V12, multiclass
        clus
vv       DEL PEAK 31(14Q31.1) MUTATED DEL PEAK 31(14Q31.1) WILD-TYPE
  CLUS_1                           29                             53
  CLUS_2                           23                             29
  CLUS_3                           29                             38
  CLUS_4                           15                             18
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 32(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       12     33     37      9
  DEL PEAK 32(15Q11.2) WILD-TYPE     31     29     32     32
D59V1, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           12                             31
  CLUS_2                           33                             29
  CLUS_3                           37                             32
  CLUS_4                            9                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       12     23     29     27
  DEL PEAK 32(15Q11.2) WILD-TYPE     37     18     47     22
D59V2, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           12                             37
  CLUS_2                           23                             18
  CLUS_3                           29                             47
  CLUS_4                           27                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       40    132     47     26
  DEL PEAK 32(15Q11.2) WILD-TYPE    195     85     66      9
D59V3, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           40                            195
  CLUS_2                          132                             85
  CLUS_3                           47                             66
  CLUS_4                           26                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       37     81     35
  DEL PEAK 32(15Q11.2) WILD-TYPE     61     74     86
D59V4, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           37                             61
  CLUS_2                           81                             74
  CLUS_3                           35                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       39     74     21     46
  DEL PEAK 32(15Q11.2) WILD-TYPE     58    104     18     91
D59V5, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           39                             58
  CLUS_2                           74                            104
  CLUS_3                           21                             18
  CLUS_4                           46                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       23    124     33
  DEL PEAK 32(15Q11.2) WILD-TYPE     29    178     64
D59V6, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           23                             29
  CLUS_2                          124                            178
  CLUS_3                           33                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q11.2) MUTATED       53     30     72     84
  DEL PEAK 32(15Q11.2) WILD-TYPE     74    100     67    104
D59V7, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           53                             74
  CLUS_2                           30                            100
  CLUS_3                           72                             67
  CLUS_4                           84                            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q11.2) MUTATED       18     37      4     33     44     35
  DEL PEAK 32(15Q11.2) WILD-TYPE     46     70     41     32     22     61
                                vv
clus                             CLUS_7
  DEL PEAK 32(15Q11.2) MUTATED       68
  DEL PEAK 32(15Q11.2) WILD-TYPE     73
D59V8, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           37                             70
  CLUS_3                            4                             41
  CLUS_4                           33                             32
  CLUS_5                           44                             22
  CLUS_6                           35                             61
  CLUS_7                           68                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       92     34     93
  DEL PEAK 32(15Q11.2) WILD-TYPE    119     61    139
D59V9, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           92                            119
  CLUS_2                           34                             61
  CLUS_3                           93                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       90     63     66
  DEL PEAK 32(15Q11.2) WILD-TYPE    138     76    105
D59V10, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           90                            138
  CLUS_2                           63                             76
  CLUS_3                           66                            105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q11.2) MUTATED       54     25     43
  DEL PEAK 32(15Q11.2) WILD-TYPE     46     84     42
D59V11, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           54                             46
  CLUS_2                           25                             84
  CLUS_3                           43                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q11.2) MUTATED       36     23     41     13      9
  DEL PEAK 32(15Q11.2) WILD-TYPE     46     29     26     20     51
D59V12, multiclass
        clus
vv       DEL PEAK 32(15Q11.2) MUTATED DEL PEAK 32(15Q11.2) WILD-TYPE
  CLUS_1                           36                             46
  CLUS_2                           23                             29
  CLUS_3                           41                             26
  CLUS_4                           13                             20
  CLUS_5                            9                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 33(15Q15.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       11     34     39      8
  DEL PEAK 33(15Q15.2) WILD-TYPE     32     28     30     33
D60V1, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           11                             32
  CLUS_2                           34                             28
  CLUS_3                           39                             30
  CLUS_4                            8                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       11     24     31     26
  DEL PEAK 33(15Q15.2) WILD-TYPE     38     17     45     23
D60V2, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           11                             38
  CLUS_2                           24                             17
  CLUS_3                           31                             45
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       40    130     46     27
  DEL PEAK 33(15Q15.2) WILD-TYPE    195     87     67      8
D60V3, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           40                            195
  CLUS_2                          130                             87
  CLUS_3                           46                             67
  CLUS_4                           27                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       37     79     34
  DEL PEAK 33(15Q15.2) WILD-TYPE     61     76     87
D60V4, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           37                             61
  CLUS_2                           79                             76
  CLUS_3                           34                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       40     74     18     41
  DEL PEAK 33(15Q15.2) WILD-TYPE     57    104     21     96
D60V5, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           40                             57
  CLUS_2                           74                            104
  CLUS_3                           18                             21
  CLUS_4                           41                             96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       23    118     32
  DEL PEAK 33(15Q15.2) WILD-TYPE     29    184     65
D60V6, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           23                             29
  CLUS_2                          118                            184
  CLUS_3                           32                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q15.2) MUTATED       49     32     72     82
  DEL PEAK 33(15Q15.2) WILD-TYPE     78     98     67    106
D60V7, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           49                             78
  CLUS_2                           32                             98
  CLUS_3                           72                             67
  CLUS_4                           82                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q15.2) MUTATED       18     37      2     33     41     36
  DEL PEAK 33(15Q15.2) WILD-TYPE     46     70     43     32     25     60
                                vv
clus                             CLUS_7
  DEL PEAK 33(15Q15.2) MUTATED       68
  DEL PEAK 33(15Q15.2) WILD-TYPE     73
D60V8, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           37                             70
  CLUS_3                            2                             43
  CLUS_4                           33                             32
  CLUS_5                           41                             25
  CLUS_6                           36                             60
  CLUS_7                           68                             73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       88     34     93
  DEL PEAK 33(15Q15.2) WILD-TYPE    123     61    139
D60V9, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           88                            123
  CLUS_2                           34                             61
  CLUS_3                           93                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       86     62     67
  DEL PEAK 33(15Q15.2) WILD-TYPE    142     77    104
D60V10, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           86                            142
  CLUS_2                           62                             77
  CLUS_3                           67                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q15.2) MUTATED       51     25     41
  DEL PEAK 33(15Q15.2) WILD-TYPE     49     84     44
D60V11, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           51                             49
  CLUS_2                           25                             84
  CLUS_3                           41                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q15.2) MUTATED       36     23     37     13      8
  DEL PEAK 33(15Q15.2) WILD-TYPE     46     29     30     20     52
D60V12, multiclass
        clus
vv       DEL PEAK 33(15Q15.2) MUTATED DEL PEAK 33(15Q15.2) WILD-TYPE
  CLUS_1                           36                             46
  CLUS_2                           23                             29
  CLUS_3                           37                             30
  CLUS_4                           13                             20
  CLUS_5                            8                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 34(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       14     33     38      8
  DEL PEAK 34(15Q21.1) WILD-TYPE     29     29     31     33
D61V1, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           14                             29
  CLUS_2                           33                             29
  CLUS_3                           38                             31
  CLUS_4                            8                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       14     23     30     26
  DEL PEAK 34(15Q21.1) WILD-TYPE     35     18     46     23
D61V2, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           23                             18
  CLUS_3                           30                             46
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       41    127     46     26
  DEL PEAK 34(15Q21.1) WILD-TYPE    194     90     67      9
D61V3, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           41                            194
  CLUS_2                          127                             90
  CLUS_3                           46                             67
  CLUS_4                           26                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       36     77     33
  DEL PEAK 34(15Q21.1) WILD-TYPE     62     78     88
D61V4, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           36                             62
  CLUS_2                           77                             78
  CLUS_3                           33                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       40     74     19     42
  DEL PEAK 34(15Q21.1) WILD-TYPE     57    104     20     95
D61V5, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           40                             57
  CLUS_2                           74                            104
  CLUS_3                           19                             20
  CLUS_4                           42                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       23    120     32
  DEL PEAK 34(15Q21.1) WILD-TYPE     29    182     65
D61V6, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           23                             29
  CLUS_2                          120                            182
  CLUS_3                           32                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(15Q21.1) MUTATED       48     33     71     82
  DEL PEAK 34(15Q21.1) WILD-TYPE     79     97     68    106
D61V7, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           48                             79
  CLUS_2                           33                             97
  CLUS_3                           71                             68
  CLUS_4                           82                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(15Q21.1) MUTATED       18     37      2     32     40     38
  DEL PEAK 34(15Q21.1) WILD-TYPE     46     70     43     33     26     58
                                vv
clus                             CLUS_7
  DEL PEAK 34(15Q21.1) MUTATED       67
  DEL PEAK 34(15Q21.1) WILD-TYPE     74
D61V8, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           18                             46
  CLUS_2                           37                             70
  CLUS_3                            2                             43
  CLUS_4                           32                             33
  CLUS_5                           40                             26
  CLUS_6                           38                             58
  CLUS_7                           67                             74
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       87     34     93
  DEL PEAK 34(15Q21.1) WILD-TYPE    124     61    139
D61V9, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           87                            124
  CLUS_2                           34                             61
  CLUS_3                           93                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       85     61     68
  DEL PEAK 34(15Q21.1) WILD-TYPE    143     78    103
D61V10, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           85                            143
  CLUS_2                           61                             78
  CLUS_3                           68                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(15Q21.1) MUTATED       50     25     41
  DEL PEAK 34(15Q21.1) WILD-TYPE     50     84     44
D61V11, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           50                             50
  CLUS_2                           25                             84
  CLUS_3                           41                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(15Q21.1) MUTATED       35     23     37     13      8
  DEL PEAK 34(15Q21.1) WILD-TYPE     47     29     30     20     52
D61V12, multiclass
        clus
vv       DEL PEAK 34(15Q21.1) MUTATED DEL PEAK 34(15Q21.1) WILD-TYPE
  CLUS_1                           35                             47
  CLUS_2                           23                             29
  CLUS_3                           37                             30
  CLUS_4                           13                             20
  CLUS_5                            8                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 35(15Q22.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       12     31     36      6
  DEL PEAK 35(15Q22.33) WILD-TYPE     31     31     33     35
D62V1, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            12                              31
  CLUS_2                            31                              31
  CLUS_3                            36                              33
  CLUS_4                             6                              35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       11     21     25     28
  DEL PEAK 35(15Q22.33) WILD-TYPE     38     20     51     21
D62V2, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            11                              38
  CLUS_2                            21                              20
  CLUS_3                            25                              51
  CLUS_4                            28                              21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       35    123     47     26
  DEL PEAK 35(15Q22.33) WILD-TYPE    200     94     66      9
D62V3, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            35                             200
  CLUS_2                           123                              94
  CLUS_3                            47                              66
  CLUS_4                            26                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       35     79     31
  DEL PEAK 35(15Q22.33) WILD-TYPE     63     76     90
D62V4, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            35                              63
  CLUS_2                            79                              76
  CLUS_3                            31                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       38     68     17     45
  DEL PEAK 35(15Q22.33) WILD-TYPE     59    110     22     92
D62V5, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            38                              59
  CLUS_2                            68                             110
  CLUS_3                            17                              22
  CLUS_4                            45                              92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       24    111     33
  DEL PEAK 35(15Q22.33) WILD-TYPE     28    191     64
D62V6, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            24                              28
  CLUS_2                           111                             191
  CLUS_3                            33                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(15Q22.33) MUTATED       50     27     69     79
  DEL PEAK 35(15Q22.33) WILD-TYPE     77    103     70    109
D62V7, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            50                              77
  CLUS_2                            27                             103
  CLUS_3                            69                              70
  CLUS_4                            79                             109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(15Q22.33) MUTATED       17     35      2     30     44     31
  DEL PEAK 35(15Q22.33) WILD-TYPE     47     72     43     35     22     65
                                 vv
clus                              CLUS_7
  DEL PEAK 35(15Q22.33) MUTATED       66
  DEL PEAK 35(15Q22.33) WILD-TYPE     75
D62V8, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            17                              47
  CLUS_2                            35                              72
  CLUS_3                             2                              43
  CLUS_4                            30                              35
  CLUS_5                            44                              22
  CLUS_6                            31                              65
  CLUS_7                            66                              75
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       84     36     85
  DEL PEAK 35(15Q22.33) WILD-TYPE    127     59    147
D62V9, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            84                             127
  CLUS_2                            36                              59
  CLUS_3                            85                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       85     55     65
  DEL PEAK 35(15Q22.33) WILD-TYPE    143     84    106
D62V10, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            85                             143
  CLUS_2                            55                              84
  CLUS_3                            65                             106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(15Q22.33) MUTATED       49     23     42
  DEL PEAK 35(15Q22.33) WILD-TYPE     51     86     43
D62V11, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            49                              51
  CLUS_2                            23                              86
  CLUS_3                            42                              43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(15Q22.33) MUTATED       34     19     39     14      8
  DEL PEAK 35(15Q22.33) WILD-TYPE     48     33     28     19     52
D62V12, multiclass
        clus
vv       DEL PEAK 35(15Q22.33) MUTATED DEL PEAK 35(15Q22.33) WILD-TYPE
  CLUS_1                            34                              48
  CLUS_2                            19                              33
  CLUS_3                            39                              28
  CLUS_4                            14                              19
  CLUS_5                             8                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 36(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED        6     11      7      1
  DEL PEAK 36(16P13.3) WILD-TYPE     37     51     62     40
D63V1, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            6                             37
  CLUS_2                           11                             51
  CLUS_3                            7                             62
  CLUS_4                            1                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED        5      7      4      9
  DEL PEAK 36(16P13.3) WILD-TYPE     44     34     72     40
D63V2, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                            7                             34
  CLUS_3                            4                             72
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED       19     26     16      7
  DEL PEAK 36(16P13.3) WILD-TYPE    216    191     97     28
D63V3, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           19                            216
  CLUS_2                           26                            191
  CLUS_3                           16                             97
  CLUS_4                            7                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED        8     22     13
  DEL PEAK 36(16P13.3) WILD-TYPE     90    133    108
D63V4, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            8                             90
  CLUS_2                           22                            133
  CLUS_3                           13                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED       12     16      6     13
  DEL PEAK 36(16P13.3) WILD-TYPE     85    162     33    124
D63V5, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           12                             85
  CLUS_2                           16                            162
  CLUS_3                            6                             33
  CLUS_4                           13                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED        5     31     11
  DEL PEAK 36(16P13.3) WILD-TYPE     47    271     86
D63V6, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            5                             47
  CLUS_2                           31                            271
  CLUS_3                           11                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16P13.3) MUTATED       12     10     19     23
  DEL PEAK 36(16P13.3) WILD-TYPE    115    120    120    165
D63V7, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           12                            115
  CLUS_2                           10                            120
  CLUS_3                           19                            120
  CLUS_4                           23                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16P13.3) MUTATED        6      8      3     11      8     10
  DEL PEAK 36(16P13.3) WILD-TYPE     58     99     42     54     58     86
                                vv
clus                             CLUS_7
  DEL PEAK 36(16P13.3) MUTATED       18
  DEL PEAK 36(16P13.3) WILD-TYPE    123
D63V8, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                            8                             99
  CLUS_3                            3                             42
  CLUS_4                           11                             54
  CLUS_5                            8                             58
  CLUS_6                           10                             86
  CLUS_7                           18                            123
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED       19     11     26
  DEL PEAK 36(16P13.3) WILD-TYPE    192     84    206
D63V9, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           19                            192
  CLUS_2                           11                             84
  CLUS_3                           26                            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED       24      9     23
  DEL PEAK 36(16P13.3) WILD-TYPE    204    130    148
D63V10, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                           24                            204
  CLUS_2                            9                            130
  CLUS_3                           23                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16P13.3) MUTATED        9      8     10
  DEL PEAK 36(16P13.3) WILD-TYPE     91    101     75
D63V11, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            9                             91
  CLUS_2                            8                            101
  CLUS_3                           10                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16P13.3) MUTATED        8      5      8      2      4
  DEL PEAK 36(16P13.3) WILD-TYPE     74     47     59     31     56
D63V12, multiclass
        clus
vv       DEL PEAK 36(16P13.3) MUTATED DEL PEAK 36(16P13.3) WILD-TYPE
  CLUS_1                            8                             74
  CLUS_2                            5                             47
  CLUS_3                            8                             59
  CLUS_4                            2                             31
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 37(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       12      7      6      5
  DEL PEAK 37(16Q23.1) WILD-TYPE     31     55     63     36
D64V1, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           12                             31
  CLUS_2                            7                             55
  CLUS_3                            6                             63
  CLUS_4                            5                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       15      3      6      6
  DEL PEAK 37(16Q23.1) WILD-TYPE     34     38     70     43
D64V2, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           15                             34
  CLUS_2                            3                             38
  CLUS_3                            6                             70
  CLUS_4                            6                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       35     23     20      4
  DEL PEAK 37(16Q23.1) WILD-TYPE    200    194     93     31
D64V3, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           35                            200
  CLUS_2                           23                            194
  CLUS_3                           20                             93
  CLUS_4                            4                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       12     18     21
  DEL PEAK 37(16Q23.1) WILD-TYPE     86    137    100
D64V4, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           12                             86
  CLUS_2                           18                            137
  CLUS_3                           21                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       16     17      7     17
  DEL PEAK 37(16Q23.1) WILD-TYPE     81    161     32    120
D64V5, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           16                             81
  CLUS_2                           17                            161
  CLUS_3                            7                             32
  CLUS_4                           17                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED        8     37     12
  DEL PEAK 37(16Q23.1) WILD-TYPE     44    265     85
D64V6, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            8                             44
  CLUS_2                           37                            265
  CLUS_3                           12                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(16Q23.1) MUTATED       15     21     15     27
  DEL PEAK 37(16Q23.1) WILD-TYPE    112    109    124    161
D64V7, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           15                            112
  CLUS_2                           21                            109
  CLUS_3                           15                            124
  CLUS_4                           27                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(16Q23.1) MUTATED        7     13      9      7     10     20
  DEL PEAK 37(16Q23.1) WILD-TYPE     57     94     36     58     56     76
                                vv
clus                             CLUS_7
  DEL PEAK 37(16Q23.1) MUTATED       12
  DEL PEAK 37(16Q23.1) WILD-TYPE    129
D64V8, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                            7                             57
  CLUS_2                           13                             94
  CLUS_3                            9                             36
  CLUS_4                            7                             58
  CLUS_5                           10                             56
  CLUS_6                           20                             76
  CLUS_7                           12                            129
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       29      9     29
  DEL PEAK 37(16Q23.1) WILD-TYPE    182     86    203
D64V9, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           29                            182
  CLUS_2                            9                             86
  CLUS_3                           29                            203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       32     12     23
  DEL PEAK 37(16Q23.1) WILD-TYPE    196    127    148
D64V10, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           32                            196
  CLUS_2                           12                            127
  CLUS_3                           23                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(16Q23.1) MUTATED       10     15     10
  DEL PEAK 37(16Q23.1) WILD-TYPE     90     94     75
D64V11, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           10                             90
  CLUS_2                           15                             94
  CLUS_3                           10                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(16Q23.1) MUTATED       12      3      8      3      9
  DEL PEAK 37(16Q23.1) WILD-TYPE     70     49     59     30     51
D64V12, multiclass
        clus
vv       DEL PEAK 37(16Q23.1) MUTATED DEL PEAK 37(16Q23.1) WILD-TYPE
  CLUS_1                           12                             70
  CLUS_2                            3                             49
  CLUS_3                            8                             59
  CLUS_4                            3                             30
  CLUS_5                            9                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 38(17P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       16     50     52     15
  DEL PEAK 38(17P12) WILD-TYPE     27     12     17     26
D65V1, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         16                           27
  CLUS_2                         50                           12
  CLUS_3                         52                           17
  CLUS_4                         15                           26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       14     32     49     38
  DEL PEAK 38(17P12) WILD-TYPE     35      9     27     11
D65V2, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         14                           35
  CLUS_2                         32                            9
  CLUS_3                         49                           27
  CLUS_4                         38                           11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       67    184     83     26
  DEL PEAK 38(17P12) WILD-TYPE    168     33     30      9
D65V3, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         67                          168
  CLUS_2                        184                           33
  CLUS_3                         83                           30
  CLUS_4                         26                            9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       47    123     54
  DEL PEAK 38(17P12) WILD-TYPE     51     32     67
D65V4, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         47                           51
  CLUS_2                        123                           32
  CLUS_3                         54                           67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       66    108     26     67
  DEL PEAK 38(17P12) WILD-TYPE     31     70     13     70
D65V5, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         66                           31
  CLUS_2                        108                           70
  CLUS_3                         26                           13
  CLUS_4                         67                           70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       40    178     49
  DEL PEAK 38(17P12) WILD-TYPE     12    124     48
D65V6, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         40                           12
  CLUS_2                        178                          124
  CLUS_3                         49                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P12) MUTATED       71     48    108    122
  DEL PEAK 38(17P12) WILD-TYPE     56     82     31     66
D65V7, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         71                           56
  CLUS_2                         48                           82
  CLUS_3                        108                           31
  CLUS_4                        122                           66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 38(17P12) MUTATED       33     62      6     50     50     42    106
  DEL PEAK 38(17P12) WILD-TYPE     31     45     39     15     16     54     35
D65V8, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         33                           31
  CLUS_2                         62                           45
  CLUS_3                          6                           39
  CLUS_4                         50                           15
  CLUS_5                         50                           16
  CLUS_6                         42                           54
  CLUS_7                        106                           35
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED      141     47    135
  DEL PEAK 38(17P12) WILD-TYPE     70     48     97
D65V9, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                        141                           70
  CLUS_2                         47                           48
  CLUS_3                        135                           97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED      128     98     97
  DEL PEAK 38(17P12) WILD-TYPE    100     41     74
D65V10, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                        128                          100
  CLUS_2                         98                           41
  CLUS_3                         97                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P12) MUTATED       80     43     53
  DEL PEAK 38(17P12) WILD-TYPE     20     66     32
D65V11, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         80                           20
  CLUS_2                         43                           66
  CLUS_3                         53                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P12) MUTATED       54     40     48     24     10
  DEL PEAK 38(17P12) WILD-TYPE     28     12     19      9     50
D65V12, multiclass
        clus
vv       DEL PEAK 38(17P12) MUTATED DEL PEAK 38(17P12) WILD-TYPE
  CLUS_1                         54                           28
  CLUS_2                         40                           12
  CLUS_3                         48                           19
  CLUS_4                         24                            9
  CLUS_5                         10                           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 39(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED        6     10     12      6
  DEL PEAK 39(17Q24.3) WILD-TYPE     37     52     57     35
D66V1, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                            6                             37
  CLUS_2                           10                             52
  CLUS_3                           12                             57
  CLUS_4                            6                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED        6      6     15      7
  DEL PEAK 39(17Q24.3) WILD-TYPE     43     35     61     42
D66V2, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                            6                             43
  CLUS_2                            6                             35
  CLUS_3                           15                             61
  CLUS_4                            7                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED       25     39     16     10
  DEL PEAK 39(17Q24.3) WILD-TYPE    210    178     97     25
D66V3, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           25                            210
  CLUS_2                           39                            178
  CLUS_3                           16                             97
  CLUS_4                           10                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED       15     22     17
  DEL PEAK 39(17Q24.3) WILD-TYPE     83    133    104
D66V4, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           15                             83
  CLUS_2                           22                            133
  CLUS_3                           17                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED       11     24      6     20
  DEL PEAK 39(17Q24.3) WILD-TYPE     86    154     33    117
D66V5, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           11                             86
  CLUS_2                           24                            154
  CLUS_3                            6                             33
  CLUS_4                           20                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED        9     38     14
  DEL PEAK 39(17Q24.3) WILD-TYPE     43    264     83
D66V6, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                           38                            264
  CLUS_3                           14                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17Q24.3) MUTATED       20     13     23     31
  DEL PEAK 39(17Q24.3) WILD-TYPE    107    117    116    157
D66V7, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           20                            107
  CLUS_2                           13                            117
  CLUS_3                           23                            116
  CLUS_4                           31                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17Q24.3) MUTATED       11     18      0     13      9     16
  DEL PEAK 39(17Q24.3) WILD-TYPE     53     89     45     52     57     80
                                vv
clus                             CLUS_7
  DEL PEAK 39(17Q24.3) MUTATED       20
  DEL PEAK 39(17Q24.3) WILD-TYPE    121
D66V8, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           11                             53
  CLUS_2                           18                             89
  CLUS_3                            0                             45
  CLUS_4                           13                             52
  CLUS_5                            9                             57
  CLUS_6                           16                             80
  CLUS_7                           20                            121
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED       34     15     33
  DEL PEAK 39(17Q24.3) WILD-TYPE    177     80    199
D66V9, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           34                            177
  CLUS_2                           15                             80
  CLUS_3                           33                            199
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED       31     20     31
  DEL PEAK 39(17Q24.3) WILD-TYPE    197    119    140
D66V10, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           31                            197
  CLUS_2                           20                            119
  CLUS_3                           31                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17Q24.3) MUTATED       21      9     15
  DEL PEAK 39(17Q24.3) WILD-TYPE     79    100     70
D66V11, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           21                             79
  CLUS_2                            9                            100
  CLUS_3                           15                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17Q24.3) MUTATED       13     10     12      6      4
  DEL PEAK 39(17Q24.3) WILD-TYPE     69     42     55     27     56
D66V12, multiclass
        clus
vv       DEL PEAK 39(17Q24.3) MUTATED DEL PEAK 39(17Q24.3) WILD-TYPE
  CLUS_1                           13                             69
  CLUS_2                           10                             42
  CLUS_3                           12                             55
  CLUS_4                            6                             27
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 40(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       11     51     52     13
  DEL PEAK 40(18P11.31) WILD-TYPE     32     11     17     28
D67V1, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            11                              32
  CLUS_2                            51                              11
  CLUS_3                            52                              17
  CLUS_4                            13                              28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED        9     34     43     41
  DEL PEAK 40(18P11.31) WILD-TYPE     40      7     33      8
D67V2, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                             9                              40
  CLUS_2                            34                               7
  CLUS_3                            43                              33
  CLUS_4                            41                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       58    194     74     32
  DEL PEAK 40(18P11.31) WILD-TYPE    177     23     39      3
D67V3, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            58                             177
  CLUS_2                           194                              23
  CLUS_3                            74                              39
  CLUS_4                            32                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED       53    135     41
  DEL PEAK 40(18P11.31) WILD-TYPE     45     20     80
D67V4, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            53                              45
  CLUS_2                           135                              20
  CLUS_3                            41                              80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       59    111     26     67
  DEL PEAK 40(18P11.31) WILD-TYPE     38     67     13     70
D67V5, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            59                              38
  CLUS_2                           111                              67
  CLUS_3                            26                              13
  CLUS_4                            67                              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED       35    179     49
  DEL PEAK 40(18P11.31) WILD-TYPE     17    123     48
D67V6, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            35                              17
  CLUS_2                           179                             123
  CLUS_3                            49                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(18P11.31) MUTATED       72     35    126    116
  DEL PEAK 40(18P11.31) WILD-TYPE     55     95     13     72
D67V7, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            72                              55
  CLUS_2                            35                              95
  CLUS_3                           126                              13
  CLUS_4                           116                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(18P11.31) MUTATED       25     63      5     56     59     32
  DEL PEAK 40(18P11.31) WILD-TYPE     39     44     40      9      7     64
                                 vv
clus                              CLUS_7
  DEL PEAK 40(18P11.31) MUTATED      109
  DEL PEAK 40(18P11.31) WILD-TYPE     32
D67V8, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            25                              39
  CLUS_2                            63                              44
  CLUS_3                             5                              40
  CLUS_4                            56                               9
  CLUS_5                            59                               7
  CLUS_6                            32                              64
  CLUS_7                           109                              32
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED      143     47    129
  DEL PEAK 40(18P11.31) WILD-TYPE     68     48    103
D67V9, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                           143                              68
  CLUS_2                            47                              48
  CLUS_3                           129                             103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED      126     98     95
  DEL PEAK 40(18P11.31) WILD-TYPE    102     41     76
D67V10, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                           126                             102
  CLUS_2                            98                              41
  CLUS_3                            95                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(18P11.31) MUTATED       84     34     59
  DEL PEAK 40(18P11.31) WILD-TYPE     16     75     26
D67V11, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            84                              16
  CLUS_2                            34                              75
  CLUS_3                            59                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(18P11.31) MUTATED       51     39     51     28      8
  DEL PEAK 40(18P11.31) WILD-TYPE     31     13     16      5     52
D67V12, multiclass
        clus
vv       DEL PEAK 40(18P11.31) MUTATED DEL PEAK 40(18P11.31) WILD-TYPE
  CLUS_1                            51                              31
  CLUS_2                            39                              13
  CLUS_3                            51                              16
  CLUS_4                            28                               5
  CLUS_5                             8                              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 41(18Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       17     54     56     17
  DEL PEAK 41(18Q12.2) WILD-TYPE     26      8     13     24
D68V1, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           17                             26
  CLUS_2                           54                              8
  CLUS_3                           56                             13
  CLUS_4                           17                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       14     36     52     42
  DEL PEAK 41(18Q12.2) WILD-TYPE     35      5     24      7
D68V2, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           36                              5
  CLUS_3                           52                             24
  CLUS_4                           42                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       72    203     94     33
  DEL PEAK 41(18Q12.2) WILD-TYPE    163     14     19      2
D68V3, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           72                            163
  CLUS_2                          203                             14
  CLUS_3                           94                             19
  CLUS_4                           33                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       58    144     52
  DEL PEAK 41(18Q12.2) WILD-TYPE     40     11     69
D68V4, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           58                             40
  CLUS_2                          144                             11
  CLUS_3                           52                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       69    124     26     76
  DEL PEAK 41(18Q12.2) WILD-TYPE     28     54     13     61
D68V5, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           69                             28
  CLUS_2                          124                             54
  CLUS_3                           26                             13
  CLUS_4                           76                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       39    201     55
  DEL PEAK 41(18Q12.2) WILD-TYPE     13    101     42
D68V6, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           39                             13
  CLUS_2                          201                            101
  CLUS_3                           55                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(18Q12.2) MUTATED       84     50    127    132
  DEL PEAK 41(18Q12.2) WILD-TYPE     43     80     12     56
D68V7, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           84                             43
  CLUS_2                           50                             80
  CLUS_3                          127                             12
  CLUS_4                          132                             56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(18Q12.2) MUTATED       31     73      7     56     65     44
  DEL PEAK 41(18Q12.2) WILD-TYPE     33     34     38      9      1     52
                                vv
clus                             CLUS_7
  DEL PEAK 41(18Q12.2) MUTATED      117
  DEL PEAK 41(18Q12.2) WILD-TYPE     24
D68V8, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           31                             33
  CLUS_2                           73                             34
  CLUS_3                            7                             38
  CLUS_4                           56                              9
  CLUS_5                           65                              1
  CLUS_6                           44                             52
  CLUS_7                          117                             24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED      160     53    148
  DEL PEAK 41(18Q12.2) WILD-TYPE     51     42     84
D68V9, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                          160                             51
  CLUS_2                           53                             42
  CLUS_3                          148                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED      146    108    107
  DEL PEAK 41(18Q12.2) WILD-TYPE     82     31     64
D68V10, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                          146                             82
  CLUS_2                          108                             31
  CLUS_3                          107                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(18Q12.2) MUTATED       90     44     66
  DEL PEAK 41(18Q12.2) WILD-TYPE     10     65     19
D68V11, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           90                             10
  CLUS_2                           44                             65
  CLUS_3                           66                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(18Q12.2) MUTATED       61     45     56     28     10
  DEL PEAK 41(18Q12.2) WILD-TYPE     21      7     11      5     50
D68V12, multiclass
        clus
vv       DEL PEAK 41(18Q12.2) MUTATED DEL PEAK 41(18Q12.2) WILD-TYPE
  CLUS_1                           61                             21
  CLUS_2                           45                              7
  CLUS_3                           56                             11
  CLUS_4                           28                              5
  CLUS_5                           10                             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 42(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       17     55     57     18
  DEL PEAK 42(18Q21.2) WILD-TYPE     26      7     12     23
D69V1, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           17                             26
  CLUS_2                           55                              7
  CLUS_3                           57                             12
  CLUS_4                           18                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       14     36     55     42
  DEL PEAK 42(18Q21.2) WILD-TYPE     35      5     21      7
D69V2, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           14                             35
  CLUS_2                           36                              5
  CLUS_3                           55                             21
  CLUS_4                           42                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       80    206    100     34
  DEL PEAK 42(18Q21.2) WILD-TYPE    155     11     13      1
D69V3, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           80                            155
  CLUS_2                          206                             11
  CLUS_3                          100                             13
  CLUS_4                           34                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       60    146     63
  DEL PEAK 42(18Q21.2) WILD-TYPE     38      9     58
D69V4, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           60                             38
  CLUS_2                          146                              9
  CLUS_3                           63                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       71    133     27     80
  DEL PEAK 42(18Q21.2) WILD-TYPE     26     45     12     57
D69V5, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           71                             26
  CLUS_2                          133                             45
  CLUS_3                           27                             12
  CLUS_4                           80                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       41    213     57
  DEL PEAK 42(18Q21.2) WILD-TYPE     11     89     40
D69V6, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           41                             11
  CLUS_2                          213                             89
  CLUS_3                           57                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED       88     59    129    134
  DEL PEAK 42(18Q21.2) WILD-TYPE     39     71     10     54
D69V7, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           88                             39
  CLUS_2                           59                             71
  CLUS_3                          129                             10
  CLUS_4                          134                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED       34     77     12     58     65     45
  DEL PEAK 42(18Q21.2) WILD-TYPE     30     30     33      7      1     51
                                vv
clus                             CLUS_7
  DEL PEAK 42(18Q21.2) MUTATED      119
  DEL PEAK 42(18Q21.2) WILD-TYPE     22
D69V8, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           34                             30
  CLUS_2                           77                             30
  CLUS_3                           12                             33
  CLUS_4                           58                              7
  CLUS_5                           65                              1
  CLUS_6                           45                             51
  CLUS_7                          119                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED      169     55    153
  DEL PEAK 42(18Q21.2) WILD-TYPE     42     40     79
D69V9, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                          169                             42
  CLUS_2                           55                             40
  CLUS_3                          153                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED      157    109    111
  DEL PEAK 42(18Q21.2) WILD-TYPE     71     30     60
D69V10, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                          157                             71
  CLUS_2                          109                             30
  CLUS_3                          111                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       92     52     68
  DEL PEAK 42(18Q21.2) WILD-TYPE      8     57     17
D69V11, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           92                              8
  CLUS_2                           52                             57
  CLUS_3                           68                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED       64     46     57     29     16
  DEL PEAK 42(18Q21.2) WILD-TYPE     18      6     10      4     44
D69V12, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           64                             18
  CLUS_2                           46                              6
  CLUS_3                           57                             10
  CLUS_4                           29                              4
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 43(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       17     55     56     19
  DEL PEAK 43(18Q22.1) WILD-TYPE     26      7     13     22
D70V1, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           17                             26
  CLUS_2                           55                              7
  CLUS_3                           56                             13
  CLUS_4                           19                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       15     36     54     42
  DEL PEAK 43(18Q22.1) WILD-TYPE     34      5     22      7
D70V2, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           15                             34
  CLUS_2                           36                              5
  CLUS_3                           54                             22
  CLUS_4                           42                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       77    206     98     34
  DEL PEAK 43(18Q22.1) WILD-TYPE    158     11     15      1
D70V3, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           77                            158
  CLUS_2                          206                             11
  CLUS_3                           98                             15
  CLUS_4                           34                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED       58    145     61
  DEL PEAK 43(18Q22.1) WILD-TYPE     40     10     60
D70V4, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           58                             40
  CLUS_2                          145                             10
  CLUS_3                           61                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       69    131     28     80
  DEL PEAK 43(18Q22.1) WILD-TYPE     28     47     11     57
D70V5, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           69                             28
  CLUS_2                          131                             47
  CLUS_3                           28                             11
  CLUS_4                           80                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED       39    213     56
  DEL PEAK 43(18Q22.1) WILD-TYPE     13     89     41
D70V6, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           39                             13
  CLUS_2                          213                             89
  CLUS_3                           56                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q22.1) MUTATED       85     59    128    133
  DEL PEAK 43(18Q22.1) WILD-TYPE     42     71     11     55
D70V7, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           85                             42
  CLUS_2                           59                             71
  CLUS_3                          128                             11
  CLUS_4                          133                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q22.1) MUTATED       33     74     12     57     65     46
  DEL PEAK 43(18Q22.1) WILD-TYPE     31     33     33      8      1     50
                                vv
clus                             CLUS_7
  DEL PEAK 43(18Q22.1) MUTATED      118
  DEL PEAK 43(18Q22.1) WILD-TYPE     23
D70V8, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           33                             31
  CLUS_2                           74                             33
  CLUS_3                           12                             33
  CLUS_4                           57                              8
  CLUS_5                           65                              1
  CLUS_6                           46                             50
  CLUS_7                          118                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED      167     53    153
  DEL PEAK 43(18Q22.1) WILD-TYPE     44     42     79
D70V9, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                          167                             44
  CLUS_2                           53                             42
  CLUS_3                          153                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED      156    106    111
  DEL PEAK 43(18Q22.1) WILD-TYPE     72     33     60
D70V10, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                          156                             72
  CLUS_2                          106                             33
  CLUS_3                          111                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q22.1) MUTATED       92     50     66
  DEL PEAK 43(18Q22.1) WILD-TYPE      8     59     19
D70V11, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           92                              8
  CLUS_2                           50                             59
  CLUS_3                           66                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q22.1) MUTATED       65     43     57     28     15
  DEL PEAK 43(18Q22.1) WILD-TYPE     17      9     10      5     45
D70V12, multiclass
        clus
vv       DEL PEAK 43(18Q22.1) MUTATED DEL PEAK 43(18Q22.1) WILD-TYPE
  CLUS_1                           65                             17
  CLUS_2                           43                              9
  CLUS_3                           57                             10
  CLUS_4                           28                              5
  CLUS_5                           15                             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        8     17     10      4
  DEL PEAK 44(19P13.3) WILD-TYPE     35     45     59     37
D71V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            8                             35
  CLUS_2                           17                             45
  CLUS_3                           10                             59
  CLUS_4                            4                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        6      8     13     12
  DEL PEAK 44(19P13.3) WILD-TYPE     43     33     63     37
D71V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            6                             43
  CLUS_2                            8                             33
  CLUS_3                           13                             63
  CLUS_4                           12                             37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       16     48     24      9
  DEL PEAK 44(19P13.3) WILD-TYPE    219    169     89     26
D71V3, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           16                            219
  CLUS_2                           48                            169
  CLUS_3                           24                             89
  CLUS_4                            9                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       13     28     15
  DEL PEAK 44(19P13.3) WILD-TYPE     85    127    106
D71V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           13                             85
  CLUS_2                           28                            127
  CLUS_3                           15                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       14     24      7     19
  DEL PEAK 44(19P13.3) WILD-TYPE     83    154     32    118
D71V5, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           14                             83
  CLUS_2                           24                            154
  CLUS_3                            7                             32
  CLUS_4                           19                            118
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       12     37     15
  DEL PEAK 44(19P13.3) WILD-TYPE     40    265     82
D71V6, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           12                             40
  CLUS_2                           37                            265
  CLUS_3                           15                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       24     13     24     31
  DEL PEAK 44(19P13.3) WILD-TYPE    103    117    115    157
D71V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           24                            103
  CLUS_2                           13                            117
  CLUS_3                           24                            115
  CLUS_4                           31                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED        9     13      2     12     15     14
  DEL PEAK 44(19P13.3) WILD-TYPE     55     94     43     53     51     82
                                vv
clus                             CLUS_7
  DEL PEAK 44(19P13.3) MUTATED       27
  DEL PEAK 44(19P13.3) WILD-TYPE    114
D71V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            9                             55
  CLUS_2                           13                             94
  CLUS_3                            2                             43
  CLUS_4                           12                             53
  CLUS_5                           15                             51
  CLUS_6                           14                             82
  CLUS_7                           27                            114
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       38     13     37
  DEL PEAK 44(19P13.3) WILD-TYPE    173     82    195
D71V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           38                            173
  CLUS_2                           13                             82
  CLUS_3                           37                            195
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       28     35     25
  DEL PEAK 44(19P13.3) WILD-TYPE    200    104    146
D71V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           28                            200
  CLUS_2                           35                            104
  CLUS_3                           25                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       20      9     18
  DEL PEAK 44(19P13.3) WILD-TYPE     80    100     67
D71V11, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           20                             80
  CLUS_2                            9                            100
  CLUS_3                           18                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED       12     14     11      6      4
  DEL PEAK 44(19P13.3) WILD-TYPE     70     38     56     27     56
D71V12, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           12                             70
  CLUS_2                           14                             38
  CLUS_3                           11                             56
  CLUS_4                            6                             27
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 45(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED        9     30     22     11
  DEL PEAK 45(20P12.1) WILD-TYPE     34     32     47     30
D72V1, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            9                             34
  CLUS_2                           30                             32
  CLUS_3                           22                             47
  CLUS_4                           11                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED        9     21     19     23
  DEL PEAK 45(20P12.1) WILD-TYPE     40     20     57     26
D72V2, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            9                             40
  CLUS_2                           21                             20
  CLUS_3                           19                             57
  CLUS_4                           23                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       45    103     36      0
  DEL PEAK 45(20P12.1) WILD-TYPE    190    114     77     35
D72V3, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           45                            190
  CLUS_2                          103                            114
  CLUS_3                           36                             77
  CLUS_4                            0                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       21     69     21
  DEL PEAK 45(20P12.1) WILD-TYPE     77     86    100
D72V4, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           21                             77
  CLUS_2                           69                             86
  CLUS_3                           21                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       27     60     12     45
  DEL PEAK 45(20P12.1) WILD-TYPE     70    118     27     92
D72V5, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           27                             70
  CLUS_2                           60                            118
  CLUS_3                           12                             27
  CLUS_4                           45                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       15     95     34
  DEL PEAK 45(20P12.1) WILD-TYPE     37    207     63
D72V6, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           15                             37
  CLUS_2                           95                            207
  CLUS_3                           34                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(20P12.1) MUTATED       37     24     57     62
  DEL PEAK 45(20P12.1) WILD-TYPE     90    106     82    126
D72V7, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           37                             90
  CLUS_2                           24                            106
  CLUS_3                           57                             82
  CLUS_4                           62                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(20P12.1) MUTATED       12     32      5     25     27     21
  DEL PEAK 45(20P12.1) WILD-TYPE     52     75     40     40     39     75
                                vv
clus                             CLUS_7
  DEL PEAK 45(20P12.1) MUTATED       58
  DEL PEAK 45(20P12.1) WILD-TYPE     83
D72V8, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                           32                             75
  CLUS_3                            5                             40
  CLUS_4                           25                             40
  CLUS_5                           27                             39
  CLUS_6                           21                             75
  CLUS_7                           58                             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       74     21     72
  DEL PEAK 45(20P12.1) WILD-TYPE    137     74    160
D72V9, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           74                            137
  CLUS_2                           21                             74
  CLUS_3                           72                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       64     58     45
  DEL PEAK 45(20P12.1) WILD-TYPE    164     81    126
D72V10, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           64                            164
  CLUS_2                           58                             81
  CLUS_3                           45                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(20P12.1) MUTATED       39     28     25
  DEL PEAK 45(20P12.1) WILD-TYPE     61     81     60
D72V11, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           39                             61
  CLUS_2                           28                             81
  CLUS_3                           25                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(20P12.1) MUTATED       27     27     21     10      7
  DEL PEAK 45(20P12.1) WILD-TYPE     55     25     46     23     53
D72V12, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           27                             55
  CLUS_2                           27                             25
  CLUS_3                           21                             46
  CLUS_4                           10                             23
  CLUS_5                            7                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 46(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(20P12.1) MUTATED        9     30     22     11
  DEL PEAK 46(20P12.1) WILD-TYPE     34     32     47     30
D73V1, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                            9                             34
  CLUS_2                           30                             32
  CLUS_3                           22                             47
  CLUS_4                           11                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(20P12.1) MUTATED        9     21     19     23
  DEL PEAK 46(20P12.1) WILD-TYPE     40     20     57     26
D73V2, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                            9                             40
  CLUS_2                           21                             20
  CLUS_3                           19                             57
  CLUS_4                           23                             26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(20P12.1) MUTATED       45    103     36      0
  DEL PEAK 46(20P12.1) WILD-TYPE    190    114     77     35
D73V3, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           45                            190
  CLUS_2                          103                            114
  CLUS_3                           36                             77
  CLUS_4                            0                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(20P12.1) MUTATED       21     69     21
  DEL PEAK 46(20P12.1) WILD-TYPE     77     86    100
D73V4, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           21                             77
  CLUS_2                           69                             86
  CLUS_3                           21                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(20P12.1) MUTATED       27     60     12     45
  DEL PEAK 46(20P12.1) WILD-TYPE     70    118     27     92
D73V5, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           27                             70
  CLUS_2                           60                            118
  CLUS_3                           12                             27
  CLUS_4                           45                             92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(20P12.1) MUTATED       15     95     34
  DEL PEAK 46(20P12.1) WILD-TYPE     37    207     63
D73V6, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           15                             37
  CLUS_2                           95                            207
  CLUS_3                           34                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(20P12.1) MUTATED       37     24     57     62
  DEL PEAK 46(20P12.1) WILD-TYPE     90    106     82    126
D73V7, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           37                             90
  CLUS_2                           24                            106
  CLUS_3                           57                             82
  CLUS_4                           62                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(20P12.1) MUTATED       12     32      5     25     27     21
  DEL PEAK 46(20P12.1) WILD-TYPE     52     75     40     40     39     75
                                vv
clus                             CLUS_7
  DEL PEAK 46(20P12.1) MUTATED       58
  DEL PEAK 46(20P12.1) WILD-TYPE     83
D73V8, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           12                             52
  CLUS_2                           32                             75
  CLUS_3                            5                             40
  CLUS_4                           25                             40
  CLUS_5                           27                             39
  CLUS_6                           21                             75
  CLUS_7                           58                             83
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(20P12.1) MUTATED       74     21     72
  DEL PEAK 46(20P12.1) WILD-TYPE    137     74    160
D73V9, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           74                            137
  CLUS_2                           21                             74
  CLUS_3                           72                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(20P12.1) MUTATED       64     58     45
  DEL PEAK 46(20P12.1) WILD-TYPE    164     81    126
D73V10, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           64                            164
  CLUS_2                           58                             81
  CLUS_3                           45                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(20P12.1) MUTATED       39     28     25
  DEL PEAK 46(20P12.1) WILD-TYPE     61     81     60
D73V11, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           39                             61
  CLUS_2                           28                             81
  CLUS_3                           25                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(20P12.1) MUTATED       27     27     21     10      7
  DEL PEAK 46(20P12.1) WILD-TYPE     55     25     46     23     53
D73V12, multiclass
        clus
vv       DEL PEAK 46(20P12.1) MUTATED DEL PEAK 46(20P12.1) WILD-TYPE
  CLUS_1                           27                             55
  CLUS_2                           27                             25
  CLUS_3                           21                             46
  CLUS_4                           10                             23
  CLUS_5                            7                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 47(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q11.2) MUTATED       11     29     25      8
  DEL PEAK 47(21Q11.2) WILD-TYPE     32     33     44     33
D74V1, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           11                             32
  CLUS_2                           29                             33
  CLUS_3                           25                             44
  CLUS_4                            8                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q11.2) MUTATED       11     23     19     20
  DEL PEAK 47(21Q11.2) WILD-TYPE     38     18     57     29
D74V2, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           11                             38
  CLUS_2                           23                             18
  CLUS_3                           19                             57
  CLUS_4                           20                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q11.2) MUTATED       50    105     32     21
  DEL PEAK 47(21Q11.2) WILD-TYPE    185    112     81     14
D74V3, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           50                            185
  CLUS_2                          105                            112
  CLUS_3                           32                             81
  CLUS_4                           21                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q11.2) MUTATED       32     67     34
  DEL PEAK 47(21Q11.2) WILD-TYPE     66     88     87
D74V4, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           32                             66
  CLUS_2                           67                             88
  CLUS_3                           34                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q11.2) MUTATED       33     70     14     42
  DEL PEAK 47(21Q11.2) WILD-TYPE     64    108     25     95
D74V5, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           33                             64
  CLUS_2                           70                            108
  CLUS_3                           14                             25
  CLUS_4                           42                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q11.2) MUTATED       21    105     33
  DEL PEAK 47(21Q11.2) WILD-TYPE     31    197     64
D74V6, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           21                             31
  CLUS_2                          105                            197
  CLUS_3                           33                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(21Q11.2) MUTATED       39     28     71     64
  DEL PEAK 47(21Q11.2) WILD-TYPE     88    102     68    124
D74V7, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           39                             88
  CLUS_2                           28                            102
  CLUS_3                           71                             68
  CLUS_4                           64                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(21Q11.2) MUTATED       15     40      8     27     30     27
  DEL PEAK 47(21Q11.2) WILD-TYPE     49     67     37     38     36     69
                                vv
clus                             CLUS_7
  DEL PEAK 47(21Q11.2) MUTATED       55
  DEL PEAK 47(21Q11.2) WILD-TYPE     86
D74V8, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           15                             49
  CLUS_2                           40                             67
  CLUS_3                            8                             37
  CLUS_4                           27                             38
  CLUS_5                           30                             36
  CLUS_6                           27                             69
  CLUS_7                           55                             86
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q11.2) MUTATED       86     25     77
  DEL PEAK 47(21Q11.2) WILD-TYPE    125     70    155
D74V9, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           86                            125
  CLUS_2                           25                             70
  CLUS_3                           77                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q11.2) MUTATED       75     56     57
  DEL PEAK 47(21Q11.2) WILD-TYPE    153     83    114
D74V10, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           75                            153
  CLUS_2                           56                             83
  CLUS_3                           57                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(21Q11.2) MUTATED       51     25     29
  DEL PEAK 47(21Q11.2) WILD-TYPE     49     84     56
D74V11, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           51                             49
  CLUS_2                           25                             84
  CLUS_3                           29                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(21Q11.2) MUTATED       35     19     25     17      9
  DEL PEAK 47(21Q11.2) WILD-TYPE     47     33     42     16     51
D74V12, multiclass
        clus
vv       DEL PEAK 47(21Q11.2) MUTATED DEL PEAK 47(21Q11.2) WILD-TYPE
  CLUS_1                           35                             47
  CLUS_2                           19                             33
  CLUS_3                           25                             42
  CLUS_4                           17                             16
  CLUS_5                            9                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 48(22Q13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       13     31     34      8
  DEL PEAK 48(22Q13.32) WILD-TYPE     30     31     35     33
D75V1, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            13                              30
  CLUS_2                            31                              31
  CLUS_3                            34                              35
  CLUS_4                             8                              33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED        7     19     33     27
  DEL PEAK 48(22Q13.32) WILD-TYPE     42     22     43     22
D75V2, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                             7                              42
  CLUS_2                            19                              22
  CLUS_3                            33                              43
  CLUS_4                            27                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       41    123     37     21
  DEL PEAK 48(22Q13.32) WILD-TYPE    194     94     76     14
D75V3, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            41                             194
  CLUS_2                           123                              94
  CLUS_3                            37                              76
  CLUS_4                            21                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       38     64     31
  DEL PEAK 48(22Q13.32) WILD-TYPE     60     91     90
D75V4, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            38                              60
  CLUS_2                            64                              91
  CLUS_3                            31                              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       37     68     14     42
  DEL PEAK 48(22Q13.32) WILD-TYPE     60    110     25     95
D75V5, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            37                              60
  CLUS_2                            68                             110
  CLUS_3                            14                              25
  CLUS_4                            42                              95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       17    113     31
  DEL PEAK 48(22Q13.32) WILD-TYPE     35    189     66
D75V6, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            17                              35
  CLUS_2                           113                             189
  CLUS_3                            31                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q13.32) MUTATED       44     31     64     77
  DEL PEAK 48(22Q13.32) WILD-TYPE     83     99     75    111
D75V7, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            44                              83
  CLUS_2                            31                              99
  CLUS_3                            64                              75
  CLUS_4                            77                             111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q13.32) MUTATED       18     40      5     29     29     27
  DEL PEAK 48(22Q13.32) WILD-TYPE     46     67     40     36     37     69
                                 vv
clus                              CLUS_7
  DEL PEAK 48(22Q13.32) MUTATED       68
  DEL PEAK 48(22Q13.32) WILD-TYPE     73
D75V8, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            18                              46
  CLUS_2                            40                              67
  CLUS_3                             5                              40
  CLUS_4                            29                              36
  CLUS_5                            29                              37
  CLUS_6                            27                              69
  CLUS_7                            68                              73
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       80     34     85
  DEL PEAK 48(22Q13.32) WILD-TYPE    131     61    147
D75V9, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            80                             131
  CLUS_2                            34                              61
  CLUS_3                            85                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       75     57     67
  DEL PEAK 48(22Q13.32) WILD-TYPE    153     82    104
D75V10, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            75                             153
  CLUS_2                            57                              82
  CLUS_3                            67                             104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q13.32) MUTATED       50     23     33
  DEL PEAK 48(22Q13.32) WILD-TYPE     50     86     52
D75V11, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            50                              50
  CLUS_2                            23                              86
  CLUS_3                            33                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q13.32) MUTATED       34     19     29     15      9
  DEL PEAK 48(22Q13.32) WILD-TYPE     48     33     38     18     51
D75V12, multiclass
        clus
vv       DEL PEAK 48(22Q13.32) MUTATED DEL PEAK 48(22Q13.32) WILD-TYPE
  CLUS_1                            34                              48
  CLUS_2                            19                              33
  CLUS_3                            29                              38
  CLUS_4                            15                              18
  CLUS_5                             9                              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
