		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	48 (8%)	552	0.24016	1	0.37322	1	0.02847	1	0.68503	1	0.00499	1	0.00352	1	0.99637	1	0.56531	1	0.31463	1	0.1916	1	0.03284	1	0.51143	1
1q gain	116 (19%)	484	0.77421	1	0.55524	1	0.00307	1	0.48579	1	0.12472	1	0.01763	1	0.9294	1	0.30943	1	0.17285	1	0.13912	1	0.01555	1	0.23525	1
2p gain	117 (20%)	483	0.04093	1	0.01558	1	3e-05	0.0252	0.00353	1	0.62329	1	0.56441	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.04318	1	0.00221	1	0.24166	1	0.00022	0.177
2q gain	115 (19%)	485	0.02597	1	0.00449	1	9.9999e-06	0.0094	0.00135	1	0.6477	1	0.85435	1	0.00109	0.835	9.9999e-06	0.0094	0.10975	1	0.01314	1	0.41395	1	0.00423	1
3p gain	69 (12%)	531	0.01304	1	0.076849	1	9.9999e-06	0.0094	0.13204	1	0.12674	1	0.04249	1	0.36134	1	0.19979	1	0.15125	1	0.50672	1	0.065169	1	0.073459	1
3q gain	95 (16%)	505	0.03194	1	0.00194	1	9.9999e-06	0.0094	0.01169	1	0.12403	1	0.0196	1	0.01773	1	0.0064299	1	0.04427	1	0.5478	1	0.00479	1	0.02385	1
4p gain	19 (3%)	581	0.81277	1	0.56886	1	0.02964	1	0.18345	1	0.15558	1	0.17619	1	0.093259	1	0.35465	1	0.58237	1	0.50514	1	0.25426	1	0.1127	1
4q gain	20 (3%)	580	0.22797	1	0.21387	1	0.00318	1	0.60392	1	0.11278	1	0.51635	1	0.28073	1	0.39112	1	0.3345	1	0.3639	1	0.056829	1	0.96085	1
5p gain	100 (17%)	500	0.49909	1	0.12916	1	0.00080999	0.627	0.92169	1	0.19766	1	0.13955	1	0.02514	1	0.04814	1	0.81379	1	0.40835	1	0.01513	1	0.04478	1
5q gain	63 (10%)	537	0.78353	1	0.59667	1	0.0071099	1	0.97489	1	0.72369	1	0.58876	1	0.19898	1	0.30479	1	0.74228	1	0.00304	1	0.29785	1	0.0072899	1
6p gain	121 (20%)	479	0.01457	1	0.00048	0.378	9.9999e-06	0.0094	0.2969	1	0.85288	1	0.96623	1	0.17859	1	0.03419	1	0.457	1	0.70961	1	0.01307	1	0.00218	1
6q gain	108 (18%)	492	0.15903	1	0.00099999	0.771	9.9999e-06	0.0094	0.34988	1	0.82757	1	0.74184	1	0.18668	1	0.072429	1	0.35639	1	0.89197	1	0.00273	1	0.01692	1
7p gain	339 (56%)	261	0.00047	0.37	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	0.0088099	1	0.0084299	1	2e-05	0.017	9.9999e-06	0.0094	0.0062499	1	0.17704	1	3e-05	0.0252	9.9999e-06	0.0094
7q gain	302 (50%)	298	2e-04	0.161	9.9999e-06	0.0094	9.9999e-06	0.0094	5.9999e-05	0.0497	0.13562	1	0.02578	1	2e-05	0.017	9.9999e-06	0.0094	0.01292	1	0.23769	1	4e-05	0.0334	9.9999e-06	0.0094
8p gain	164 (27%)	436	0.9235	1	0.53086	1	9.9999e-06	0.0094	0.96925	1	0.44315	1	0.28815	1	0.004	1	0.00469	1	0.28877	1	0.37543	1	0.79954	1	0.38276	1
8q gain	306 (51%)	294	0.35063	1	0.16616	1	9.9999e-06	0.0094	0.01717	1	0.096719	1	0.074489	1	0.00016	0.13	0.0060499	1	0.37159	1	0.01606	1	0.051919	1	0.02022	1
9p gain	118 (20%)	482	0.5382	1	0.58979	1	0.1737	1	0.56816	1	0.12748	1	0.25599	1	0.81039	1	0.57638	1	0.97866	1	0.92106	1	0.084329	1	0.27605	1
9q gain	99 (16%)	501	0.65717	1	0.83281	1	0.50837	1	0.88266	1	0.092759	1	0.27406	1	0.93479	1	0.79382	1	0.57654	1	0.39976	1	0.71726	1	0.75497	1
10p gain	44 (7%)	556	0.10894	1	0.11046	1	0.0066099	1	0.83776	1	0.10672	1	0.04929	1	0.47676	1	0.85729	1	0.50584	1	0.3011	1	0.04131	1	0.12278	1
10q gain	24 (4%)	576	0.91094	1	0.25756	1	0.052279	1	0.1441	1	0.16727	1	0.70514	1	0.97323	1	0.6361	1	0.51708	1	0.66052	1	0.13146	1	0.83668	1
11p gain	82 (14%)	518	0.0126	1	0.0054299	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.65731	1	0.63372	1	0.0017	1	0.0056699	1	0.3296	1	0.40523	1	0.01791	1	0.082739	1
11q gain	74 (12%)	526	0.01621	1	0.00103	0.792	9.9999e-06	0.0094	2e-05	0.017	0.19416	1	0.37426	1	9.9999e-06	0.0094	3e-05	0.0252	0.3013	1	0.060799	1	0.00019	0.154	0.00062999	0.492
12p gain	126 (21%)	474	0.35863	1	0.36115	1	0.11416	1	0.00422	1	0.53187	1	0.3166	1	0.77996	1	0.31034	1	0.50519	1	0.80727	1	0.19071	1	0.29348	1
12q gain	110 (18%)	490	0.25043	1	0.34869	1	0.04382	1	0.00242	1	0.57213	1	0.49382	1	0.56901	1	0.35804	1	0.33969	1	0.48151	1	0.074879	1	0.1309	1
13q gain	359 (60%)	241	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	0.24349	1	0.34597	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.00063999	0.499	0.50107	1	9.9999e-06	0.0094	9.9999e-06	0.0094
14q gain	42 (7%)	558	0.73552	1	0.3975	1	0.01543	1	0.84949	1	0.78991	1	0.82988	1	0.55852	1	0.32585	1	0.88236	1	0.88922	1	0.61707	1	0.737	1
15q gain	15 (2%)	585	0.29774	1	0.152	1	0.15962	1	0.58812	1	0.17173	1	0.20863	1	0.94824	1	0.30286	1	1	1	0.72397	1	0.7139	1	0.74707	1
16p gain	141 (24%)	459	0.0060999	1	0.00405	1	9.9999e-06	0.0094	0.01543	1	0.14229	1	0.66706	1	0.00025	0.199	0.00024	0.192	0.49104	1	0.43866	1	0.01719	1	6.9999e-05	0.0578
16q gain	139 (23%)	461	0.0083499	1	0.00365	1	9.9999e-06	0.0094	0.02908	1	0.23157	1	0.47249	1	0.00046	0.363	0.00019	0.154	0.78593	1	0.47683	1	0.00284	1	5e-05	0.0415
17p gain	37 (6%)	563	0.44277	1	0.16282	1	0.26759	1	0.90001	1	0.19716	1	1	1	0.50618	1	0.067619	1	0.16745	1	0.72038	1	0.6174	1	0.51432	1
17q gain	107 (18%)	493	0.01259	1	0.0050999	1	9.9999e-06	0.0094	0.00256	1	0.27443	1	0.67411	1	0.00016	0.13	2e-05	0.017	0.00212	1	0.01967	1	0.60592	1	0.03882	1
18p gain	33 (6%)	567	0.30904	1	0.37062	1	0.00107	0.821	0.00073999	0.574	0.60755	1	0.059529	1	0.03386	1	0.0052099	1	0.3983	1	0.078449	1	0.11192	1	0.03496	1
18q gain	20 (3%)	580	0.04517	1	0.4371	1	0.0077699	1	0.0089699	1	0.61318	1	0.01414	1	0.0063099	1	0.00022	0.177	0.12879	1	0.02193	1	0.03964	1	0.01516	1
19p gain	100 (17%)	500	0.41164	1	0.02798	1	9.9999e-06	0.0094	0.063129	1	0.15839	1	0.77126	1	0.22311	1	0.00122	0.927	0.079469	1	0.73348	1	0.073239	1	0.01294	1
19q gain	110 (18%)	490	0.077529	1	0.0089099	1	3e-05	0.0252	0.086739	1	0.03089	1	0.46063	1	0.61088	1	0.00214	1	0.29855	1	0.97882	1	0.11175	1	0.02093	1
20p gain	343 (57%)	257	0.00025	0.199	2e-05	0.017	9.9999e-06	0.0094	0.00129	0.979	0.01882	1	0.10392	1	8.9999e-05	0.0738	9.9999e-06	0.0094	0.34881	1	0.064049	1	0.00068999	0.537	4e-05	0.0334
20q gain	454 (76%)	146	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	0.0050599	1	0.00491	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.02007	1	0.00053999	0.423	9.9999e-06	0.0094	9.9999e-06	0.0094
21q gain	32 (5%)	568	0.31263	1	0.26335	1	0.00052999	0.416	0.76326	1	0.48438	1	0.2558	1	0.86351	1	0.481	1	0.41108	1	0.96903	1	0.26017	1	0.84461	1
22q gain	23 (4%)	577	0.11515	1	0.13407	1	0.02014	1	0.31099	1	0.86011	1	0.69263	1	0.14811	1	0.65791	1	0.69099	1	0.91681	1	0.12951	1	0.44611	1
xq gain	101 (17%)	499	0.2579	1	0.28508	1	0.00014	0.114	0.12411	1	0.10815	1	0.067599	1	0.61977	1	0.91506	1	0.41851	1	1	1	0.58969	1	0.27971	1
1p loss	135 (22%)	465	0.065749	1	0.02992	1	9.9999e-06	0.0094	0.00238	1	0.99012	1	0.86762	1	0.00105	0.806	0.00027	0.215	0.29849	1	0.04549	1	0.0447	1	0.00341	1
1q loss	76 (13%)	524	0.23275	1	0.21137	1	9.9999e-06	0.0094	0.29986	1	0.86848	1	0.81276	1	0.00021	0.169	0.0012	0.913	0.76891	1	0.0098599	1	0.12641	1	0.0072999	1
2p loss	17 (3%)	583	1	1	0.61569	1	0.00049	0.385	0.03334	1	0.34594	1	0.81097	1	0.16456	1	0.057329	1	0.093889	1	0.22766	1	0.73956	1	0.61625	1
2q loss	13 (2%)	587	0.80487	1	0.21471	1	0.0303	1	0.18696	1	0.53333	1	0.38867	1	0.35523	1	0.090389	1	0.16199	1	0.04621	1	0.19692	1	0.92146	1
3p loss	68 (11%)	532	0.35875	1	0.83531	1	0.33497	1	0.49256	1	0.53468	1	0.62874	1	0.61218	1	0.68654	1	0.77532	1	0.39561	1	0.056009	1	0.17478	1
3q loss	44 (7%)	556	0.24713	1	0.24718	1	0.52598	1	0.5694	1	0.3191	1	0.95734	1	0.61585	1	0.47697	1	0.57586	1	0.33871	1	0.36538	1	0.39605	1
4p loss	190 (32%)	410	0.02908	1	0.01544	1	9.9999e-06	0.0094	0.00132	1	0.47749	1	0.29898	1	0.00046	0.363	0.00013	0.106	0.081279	1	0.46532	1	6.9999e-05	0.0578	0.00221	1
4q loss	184 (31%)	416	0.04227	1	0.075099	1	9.9999e-06	0.0094	5e-05	0.0415	0.75948	1	0.58879	1	0.00077999	0.604	0.00015	0.122	0.10592	1	0.13454	1	0.00101	0.778	0.00023	0.184
5p loss	81 (14%)	519	0.37676	1	0.69549	1	3e-05	0.0252	0.03085	1	0.68665	1	0.76042	1	0.78029	1	0.29336	1	1	1	0.20743	1	0.10856	1	0.00112	0.856
5q loss	115 (19%)	485	0.0086599	1	0.02895	1	9.9999e-06	0.0094	0.03252	1	0.11123	1	0.10056	1	0.0098999	1	0.03912	1	0.62426	1	0.63573	1	0.00054999	0.431	6.9999e-05	0.0578
6p loss	45 (8%)	555	0.56027	1	0.0218	1	0.02628	1	0.84308	1	0.068169	1	0.076789	1	0.90949	1	0.25363	1	0.45567	1	0.93628	1	0.068139	1	0.44391	1
6q loss	68 (11%)	532	0.44543	1	0.31271	1	0.02323	1	0.69441	1	0.22799	1	0.15689	1	0.10724	1	0.26891	1	0.51387	1	0.51907	1	0.80489	1	0.71429	1
7q loss	4 (1%)	596	NA	NA	NA	NA	0.32974	1	1	1	1	1	0.74187	1	0.53218	1	0.95863	1	1	1	0.22268	1	NA	NA	NA	NA
8p loss	212 (35%)	388	0.0091199	1	0.0061399	1	9.9999e-06	0.0094	7.9999e-05	0.0658	0.32774	1	0.03985	1	0.00066999	0.522	4e-05	0.0334	0.5123	1	0.20717	1	0.00068999	0.537	2e-05	0.017
8q loss	33 (6%)	567	0.68409	1	0.67911	1	0.00116	0.885	0.80535	1	0.96615	1	0.27001	1	0.59993	1	0.56527	1	0.43272	1	0.44938	1	0.52196	1	0.13919	1
9p loss	73 (12%)	527	0.49078	1	0.20157	1	9.9999e-06	0.0094	0.01151	1	0.84364	1	0.47226	1	8.9999e-05	0.0738	0.0098699	1	0.20632	1	0.11065	1	0.00137	1	0.02768	1
9q loss	72 (12%)	528	0.04855	1	0.01388	1	9.9999e-06	0.0094	0.00274	1	0.92991	1	0.25121	1	8.9999e-05	0.0738	0.00061999	0.485	0.46702	1	0.01622	1	0.00022	0.177	0.02681	1
10p loss	98 (16%)	502	0.01103	1	0.18584	1	9.9999e-06	0.0094	0.01363	1	0.01754	1	0.40794	1	0.00080999	0.627	0.00032	0.254	0.2087	1	0.36252	1	0.02148	1	0.00449	1
10q loss	106 (18%)	494	0.02246	1	0.25406	1	9.9999e-06	0.0094	0.0076999	1	0.01322	1	0.40006	1	3e-05	0.0252	2e-05	0.017	0.70366	1	0.38269	1	0.00036	0.285	0.00014	0.114
11p loss	73 (12%)	527	0.95283	1	1	1	0.04627	1	0.17647	1	0.49919	1	0.60262	1	0.5203	1	0.22517	1	0.91261	1	0.23668	1	0.04483	1	0.2286	1
11q loss	91 (15%)	509	0.84633	1	0.68253	1	0.04074	1	0.03955	1	0.95646	1	0.70029	1	0.99393	1	0.76357	1	0.80621	1	0.41607	1	0.14949	1	0.39224	1
12p loss	70 (12%)	530	0.066799	1	0.01382	1	9.9999e-06	0.0094	0.04757	1	0.8768	1	0.58239	1	0.052179	1	0.03662	1	0.82257	1	0.82032	1	0.0062999	1	0.00221	1
12q loss	70 (12%)	530	0.12413	1	0.02668	1	9.9999e-06	0.0094	0.059789	1	0.64329	1	0.97464	1	0.0094299	1	0.00478	1	0.26166	1	0.88367	1	0.0087299	1	0.00187	1
13q loss	20 (3%)	580	0.29564	1	0.01606	1	0.098079	1	0.32646	1	0.29374	1	0.0067399	1	0.73208	1	0.14862	1	0.73446	1	0.78874	1	0.01919	1	0.62494	1
14q loss	199 (33%)	401	0.00021	0.169	7.9999e-05	0.0658	9.9999e-06	0.0094	9.9999e-06	0.0094	0.00277	1	0.18091	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.13332	1	0.11917	1	9.9999e-06	0.0094	9.9999e-06	0.0094
15q loss	222 (37%)	378	9.9999e-05	0.0816	0.00174	1	9.9999e-06	0.0094	0.00032	0.254	0.23768	1	0.77887	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.82147	1	0.68496	1	9.9999e-06	0.0094	9.9999e-06	0.0094
16p loss	41 (7%)	559	0.072529	1	0.371	1	0.15546	1	0.96954	1	0.34237	1	0.23906	1	0.87457	1	0.71316	1	0.8337	1	0.23803	1	0.8401	1	0.96843	1
16q loss	43 (7%)	557	0.02587	1	0.58512	1	0.0075999	1	0.91092	1	0.24068	1	0.23876	1	0.98693	1	0.95155	1	0.57293	1	0.55216	1	1	1	0.94818	1
17p loss	330 (55%)	270	3e-05	0.0252	5.9999e-05	0.0497	9.9999e-06	0.0094	9.9999e-06	0.0094	0.12169	1	0.0084199	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.0363	1	0.02448	1	9.9999e-06	0.0094	9.9999e-06	0.0094
17q loss	89 (15%)	511	0.99268	1	0.78315	1	0.00119	0.907	0.67284	1	0.88278	1	0.076089	1	0.54818	1	0.03635	1	0.94618	1	0.41704	1	0.064829	1	0.1037	1
18p loss	367 (61%)	233	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	0.03218	1	0.04817	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.0073999	1	0.0095999	1	9.9999e-06	0.0094	9.9999e-06	0.0094
18q loss	396 (66%)	204	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	9.9999e-06	0.0094	0.051499	1	0.10144	1	9.9999e-06	0.0094	9.9999e-06	0.0094	0.00109	0.835	0.00461	1	9.9999e-06	0.0094	9.9999e-06	0.0094
19p loss	64 (11%)	536	0.37732	1	0.47648	1	8.9999e-05	0.0738	0.25697	1	0.69633	1	0.24669	1	0.01531	1	0.057609	1	0.15711	1	0.0066499	1	0.5044	1	0.066899	1
19q loss	54 (9%)	546	0.66756	1	0.14728	1	0.00021	0.169	0.78964	1	0.088879	1	0.40702	1	0.10813	1	0.32508	1	0.27187	1	0.04688	1	0.36711	1	0.17383	1
20p loss	64 (11%)	536	0.11264	1	0.01938	1	4e-05	0.0334	0.00402	1	0.78505	1	0.94745	1	0.42361	1	0.0085699	1	0.74498	1	0.51143	1	0.1099	1	0.051779	1
20q loss	5 (1%)	595	NA	NA	NA	NA	0.88623	1	0.26881	1	0.094869	1	0.70023	1	0.40052	1	0.65116	1	0.82824	1	0.68902	1	NA	NA	NA	NA
21q loss	187 (31%)	413	0.02582	1	0.04144	1	9.9999e-06	0.0094	0.02852	1	0.70196	1	0.53589	1	6.9999e-05	0.0578	0.04503	1	0.12281	1	0.13002	1	0.00269	1	0.01783	1
22q loss	197 (33%)	403	0.00471	1	0.00031	0.246	9.9999e-06	0.0094	0.064089	1	0.77692	1	0.79938	1	0.005	1	0.00024	0.192	0.97696	1	0.070029	1	0.00084999	0.656	0.00434	1
xq loss	78 (13%)	522	0.98671	1	0.68904	1	0.0483	1	0.40738	1	0.052589	1	0.43648	1	0.49972	1	0.15331	1	0.04389	1	0.71968	1	0.46443	1	0.078959	1
