Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-FA-8693-01A-11D-2389-01	TCGA-FA-A4BB-01A-11D-A31W-01	TCGA-FA-A4XK-01A-11D-A31W-01	TCGA-FA-A6HN-01A-11D-A31W-01	TCGA-FA-A6HO-01A-11D-A31W-01	TCGA-FF-8041-01A-11D-2209-01	TCGA-FF-8042-01A-11D-2209-01	TCGA-FF-8043-01A-11D-2209-01	TCGA-FF-8046-01A-11D-2209-01	TCGA-FF-8047-01A-11D-2209-01	TCGA-FF-8061-01A-11D-2209-01	TCGA-FF-8062-01A-11D-2209-01	TCGA-FM-8000-01A-11D-2209-01	TCGA-G8-6324-01A-11D-2209-01	TCGA-G8-6325-01A-11D-2209-01	TCGA-G8-6326-01A-11D-2209-01	TCGA-G8-6906-01A-11D-2209-01	TCGA-G8-6907-01A-11D-2209-01	TCGA-G8-6909-01A-11D-2209-01	TCGA-G8-6914-01A-11D-2209-01	TCGA-GR-7351-01A-11D-2209-01	TCGA-GR-7353-01A-11D-2209-01	TCGA-GR-A4D4-01A-11D-A31W-01	TCGA-GR-A4D5-01A-11D-A31W-01	TCGA-GR-A4D6-01A-11D-A31W-01	TCGA-GR-A4D9-01B-11D-A31W-01	TCGA-RQ-A68N-01A-11D-A31W-01	TCGA-RQ-A6JB-01A-11D-A31W-01	
Amplification Peak 1	1q31.1  	chr1:120522602-220400735(probes 67828:111973)   	chr1:178686810-194535389(probes 85452:95404)    	chr1:160556905-206567715(probes 73471:102368)   	0.20522	    0.20522		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	1	0	1	0	0	1	2	0	0	
Amplification Peak 2	2p15    	chr2:60961583-61776974(probes 164749:165134)      	chr2:60962318-61776901(probes 164750:165133)      	chr2:58198363-66026430(probes 162956:167316)      	1.4081e-09	 1.4081e-09		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	0	1	0	2	0	0	2	0	2	0	0	0	0	1	2	0	0	0	0	0	0	0	0	2	
Amplification Peak 3	3q27.3  	chr3:187616647-187814476(probes 361966:362107)  	chr3:187616779-187814401(probes 361967:362106)  	chr3:187491795-187864220(probes 361913:362146)  	0.054088	   0.054088		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	0	
Amplification Peak 4	8q24.12 	chr8:113190838-146364022(probes 809914:829813)  	chr8:121624693-121730363(probes 815029:815102)  	chr8:116334299-146364022(probes 811497:829813)  	0.21233	    0.21233		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	1	1	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	
Amplification Peak 5	12q13.12	chr12:44497239-51015508(probes 1078498:1081962)  	chr12:50572300-51006181(probes 1081787:1081961)  	chr12:50572300-51018538(probes 1081787:1081964)  	0.21233	    0.21233		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	
Amplification Peak 6	16p11.2 	chr16:30572436-30626628(probes 1294127:1294144)  	chr16:30574956-30624199(probes 1294128:1294143)  	chr16:30574956-30632080(probes 1294128:1294146)  	0.22191	    0.22191		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	
Amplification Peak 7	Xq27.3  	chrX:144689696-144696094(probes 1559551:1559560)	chrX:144690592-144695602(probes 1559552:1559559)	chrX:138733105-155270560(probes 1557050:1563860)	0.016447	   0.016447		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	2	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak  1	1p22.1  	chr1:1-249250621(probes 1:129200)                 	chr1:93640821-93753734(probes 51936:51976)          	chr1:93683544-93688818(probes 51957:51958)          	0.10389	    0.25808		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	
Deletion Peak  2	1p13.1  	chr1:108107499-119946150(probes 60307:67446)    	chr1:117051820-117120066(probes 65784:65801)      	chr1:117081811-117090363(probes 65793:65794)      	0.052876	   0.072627		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	1	0	1	0	
Deletion Peak  3	1q43    	chr1:240637663-245913707(probes 125290:128545)  	chr1:242065222-242197567(probes 126363:126364)    	chr1:240756850-249250621(probes 125376:129200)    	0.005622	   0.005622		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	
Deletion Peak  4	2q23.1  	chr2:133425861-164600454(probes 197903:215746)  	chr2:148775624-149272575(probes 206581:206796)    	chr2:140592849-151019952(probes 201920:207828)    	0.024457	   0.025125		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	
Deletion Peak  5	6q14.1  	chr6:76017227-111139036(probes 611909:631551)    	chr6:79642076-79792746(probes 613814:613873)        	chr6:76424899-119219238(probes 612091:635844)      	0.005622	   0.014256		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	1	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	1	1	0	
Deletion Peak  6	6q23.3  	chr6:137814087-138410514(probes 647391:647785)  	chr6:138182417-138214040(probes 647664:647674)    	chr6:136961326-138830871(probes 646875:648076)    	0.00090582	  0.0046839		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	0	1	1	1	
Deletion Peak  7	7p21.1  	chr7:9667988-20260876(probes 670446:676404)        	chr7:17056720-17800815(probes 675246:675247)        	chr7:17044889-17808648(probes 675238:675249)        	0.10783	    0.11053		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	
Deletion Peak  8	8p23.1  	chr8:1-24783837(probes 748233:762127)               	chr8:11278320-11328181(probes 753096:753150)        	chr8:11292086-11309276(probes 753119:753139)        	0.22025	    0.21969		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	
Deletion Peak  9	8q12.1  	chr8:54623401-71525707(probes 776712:786694)      	chr8:59713200-60034328(probes 779839:780073)        	chr8:59869733-59872874(probes 779957:779958)        	0.13249	    0.12824		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	
Deletion Peak 10	9p21.3  	chr9:21865498-22448737(probes 843255:843619)      	chr9:21959052-21977193(probes 843306:843307)        	chr9:21420139-23517122(probes 842981:844292)        	1.9824e-07	 1.9824e-07		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	1	1	
Deletion Peak 11	10q23.31	chr10:89574877-93668989(probes 950050:952857)    	chr10:89617402-89735596(probes 950078:950265)      	chr10:89602998-109492927(probes 950068:962105)    	0.0074196	  0.0074196		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	1	0	0	1	
Deletion Peak 12	13q14.2 	chr13:43424188-73307526(probes 1145319:1160514)  	chr13:48984816-49003156(probes 1148811:1148835)    	chr13:48971579-49014333(probes 1148803:1148850)    	0.031642	   0.079699		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	
Deletion Peak 13	13q33.3 	chr13:99510088-115169878(probes 1176688:1186720)	chr13:107820390-108522799(probes 1182250:1182869)	chr13:101863055-115169878(probes 1178142:1186720)	0.082511	    0.12824		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	
Deletion Peak 14	15q15.1 	chr15:35837298-48066663(probes 1241381:1248388)  	chr15:42129513-42186481(probes 1245338:1245351)    	chr15:39385495-45423888(probes 1243865:1246668)    	0.012316	    0.24209		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	1	0	0	0	
Deletion Peak 15	15q21.1 	chr15:44851245-45036916(probes 1246517:1246596)  	chr15:44956587-45013397(probes 1246559:1246581)    	chr15:39385495-45423888(probes 1243865:1246668)    	0.00049172	   0.005622		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	1	0	0	1	
Deletion Peak 16	16p13.13	chr16:8886383-12754094(probes 1284654:1287451)    	chr16:10970628-11020236(probes 1286211:1286257)    	chr16:11000849-11004362(probes 1286235:1286236)    	0.24209	    0.24209		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 17	16q23.1 	chr16:78129058-79627770(probes 1313969:1315334)  	chr16:78129058-79247026(probes 1313969:1314982)    	chr16:78583258-78586506(probes 1314476:1314477)    	0.21211	    0.21969		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	
Deletion Peak 18	17q24.1 	chr17:62970616-63134027(probes 1349231:1349318)  	chr17:63003700-63057650(probes 1349247:1349280)    	chr17:62948574-63223948(probes 1349220:1349386)    	0.01508	    0.01508		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	
Deletion Peak 19	19p13.2 	chr19:2006286-10467501(probes 1401569:1404672)    	chr19:8017820-8073463(probes 1403543:1403560)        	chr19:8042237-8053104(probes 1403552:1403553)        	0.11053	    0.11053		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	
Amplification Peak 1 - CN values	1q31.1  	chr1:120522602-220400735(probes 67828:111973)   	chr1:178686810-194535389(probes 85452:95404)    	chr1:160556905-206567715(probes 73471:102368)   	0.20522	    0.20522		Actual Copy Change Given	0.0024969	0.10389	-0.0038779	0.44901	0.0049969	-0.018765	-0.0088526	0.0114	-0.0011087	0.82902	0.0282	0.01782	0.74255	0.001803	0.20564	0.00027728	-0.0017424	0	0.013213	0.56152	0.0054139	0.59009	0.013911	0.0011093	0.50654	1.5905	-0.30815	0.0079175	
Amplification Peak 2 - CN values	2p15    	chr2:60961583-61776974(probes 164749:165134)      	chr2:60962318-61776901(probes 164750:165133)      	chr2:58198363-66026430(probes 162956:167316)      	1.4081e-09	 1.4081e-09		Actual Copy Change Given	0.012516	0.0034163	0.36379	0.00069327	-0.18451	0.37446	0.025671	3.6569	0.0114	-0.0058398	0.91299	0.0037432	2.7332	-0.0066432	-0.0012473	0.011121	0.0037465	0.74727	1.9622	0.0097276	0.033408	0.0030522	-0.0010006	0.0038854	-0.0016629	0.0035131	0.014609	2.0281	
Amplification Peak 3 - CN values	3q27.3  	chr3:187616647-187814476(probes 361966:362107)  	chr3:187616779-187814401(probes 361967:362106)  	chr3:187491795-187864220(probes 361913:362146)  	0.054088	   0.054088		Actual Copy Change Given	0.013632	0.00091824	0.98494	0.0066653	1.1381	-0.0026322	3.6569	0.010842	0.0007857	0.028481	0.011539	0.007319	0.00043848	0.0036076	-0.28834	0.0024183	0.012097	0	0.016916	0.51682	0.019363	0.0015255	0.66882	0.0038854	0.49787	0.026092	0.43665	0.019783	
Amplification Peak 4 - CN values	8q24.12 	chr8:113190838-146364022(probes 809914:829813)  	chr8:121624693-121730363(probes 815029:815102)  	chr8:116334299-146364022(probes 811497:829813)  	0.21233	    0.21233		Actual Copy Change Given	0.0027745	-0.0097327	0.019083	-0.0013858	0.35855	0.38584	1.365	0.72641	-0.0040162	0.0056919	0.77176	-0.0036044	-0.0049619	0	0.0040243	-0.010784	0.058081	0.001803	0.006109	0.0040243	0.016146	0.57165	-0.025483	-0.0030475	-0.0041546	0.016146	-0.33018	0.001803	
Amplification Peak 5 - CN values	12q13.12	chr12:44497239-51015508(probes 1078498:1081962)  	chr12:50572300-51006181(probes 1081787:1081961)  	chr12:50572300-51018538(probes 1081787:1081964)  	0.21233	    0.21233		Actual Copy Change Given	0.0072791	0.0018893	0.89568	-0.00069303	-0.20436	0.40744	-0.00243	2.8242	0.0044411	-0.0051227	0.025465	0.0059667	0.00057715	-0.00013862	0.00041593	0.0023581	0.00083195	0	0.056228	0.017684	0.0027745	-0.0065886	0.013213	0.161	-0.0012473	0.0084743	0.68305	0.0086135	
Amplification Peak 6 - CN values	16p11.2 	chr16:30572436-30626628(probes 1294127:1294144)  	chr16:30574956-30624199(probes 1294128:1294143)  	chr16:30574956-30632080(probes 1294128:1294146)  	0.22191	    0.22191		Actual Copy Change Given	-0.013264	-0.0065572	0.4375	0.00069327	-0.18559	-0.017254	0.0084743	3.0134	-0.0091286	0.0058309	-0.0033243	-0.0097191	0.74559	-0.0085766	0.0013868	0.0057313	-0.033814	0.001803	0.51594	0.0091579	0.0013868	0.014616	0.73625	-0.0049844	0.014609	-0.015674	0.32511	-0.0026322	
Amplification Peak 7 - CN values	Xq27.3  	chrX:144689696-144696094(probes 1559551:1559560)	chrX:144690592-144695602(probes 1559552:1559559)	chrX:138733105-155270560(probes 1557050:1563860)	0.016447	   0.016447		Actual Copy Change Given	-0.016088	0.027304	0.14424	3.6569	-0.087181	0.39961	1.1484	0.48113	0.022444	-0.11116	-0.075166	-0.012707	0.065393	-0.011887	-0.0037395	0.0026357	-0.044822	0.042449	0.049256	0.098997	-0.00069303	-0.025817	-0.049559	0.012516	0.022725	0.013911	0.26963	-0.019863	
Deletion Peak  1 - CN values	1p22.1  	chr1:1-249250621(probes 1:129200)                 	chr1:93640821-93753734(probes 51936:51976)          	chr1:93683544-93688818(probes 51957:51958)          	0.10389	    0.25808		Actual Copy Change Given	0.0024969	-0.007111	-0.0056757	0.0016642	-0.16807	-0.018765	-0.009175	0.0066859	-0.0011087	0.00458	0.0091705	-0.0084377	0.0032136	0.001803	-0.2654	0.00027728	-0.014916	0	-0.00055444	-0.00097017	0.0054139	-0.63906	0.013911	0.0011093	0.0073609	0.013353	-0.30815	0.0079175	
Deletion Peak  2 - CN values	1p13.1  	chr1:108107499-119946150(probes 60307:67446)    	chr1:117051820-117120066(probes 65784:65801)      	chr1:117081811-117090363(probes 65793:65794)      	0.052876	   0.072627		Actual Copy Change Given	0.0024969	-0.007111	-0.0056757	-0.44566	-0.16807	-0.018765	-0.009175	0.0066859	-0.0011087	0.01419	0.0282	0.00023204	0.0032136	0.001803	-0.27965	0.00027728	-0.0017424	0	-0.44717	-0.0026111	0.0054139	-0.63906	0.013911	0.0011093	-0.50567	0.013353	-0.30815	0.0079175	
Deletion Peak  3 - CN values	1q43    	chr1:240637663-245913707(probes 125290:128545)  	chr1:242065222-242197567(probes 126363:126364)    	chr1:240756850-249250621(probes 125376:129200)    	0.005622	   0.005622		Actual Copy Change Given	0.0024969	-0.0029614	-0.0038779	-0.43854	-0.65975	-0.03783	-0.7895	-0.89074	-0.0086614	-0.92852	-0.046312	0.0026324	0.74255	0.001803	-0.0060554	0.00027728	-0.010508	0	-0.00041585	-0.012713	-0.0035449	0.58046	-0.017666	0.0011093	-0.014778	-0.73722	-0.33181	-0.0095426	
Deletion Peak  4 - CN values	2q23.1  	chr2:133425861-164600454(probes 197903:215746)  	chr2:148775624-149272575(probes 206581:206796)    	chr2:140592849-151019952(probes 201920:207828)    	0.024457	   0.025125		Actual Copy Change Given	0.0050454	-0.026629	0.36117	0.00069327	-0.18451	0.37263	-0.011611	-0.85265	-0.0022168	-0.88534	0.022058	0.0037432	0.0065488	-0.33929	-0.0012473	0.00013863	0.0037465	-0.0055914	-0.0049844	0.0025413	-0.53144	0.0044411	-0.0010006	0.0038854	-0.0085766	0.010842	-0.29952	0.0013868	
Deletion Peak  5 - CN values	6q14.1  	chr6:76017227-111139036(probes 611909:631551)    	chr6:79642076-79792746(probes 613814:613873)        	chr6:76424899-119219238(probes 612091:635844)      	0.005622	   0.014256		Actual Copy Change Given	0.0086135	0.0038373	-0.84755	0.0027745	-0.45447	-0.0096806	-0.77744	0.015114	-0.54179	0.03031	-0.043696	-0.012385	0.0023807	0.0022193	-0.28132	-0.0021819	-0.77252	0.0040243	0.015866	-0.00027724	0.0030562	-0.00069303	-0.014641	-0.10552	-0.0069195	-0.71444	-0.64722	0	
Deletion Peak  6 - CN values	6q23.3  	chr6:137814087-138410514(probes 647391:647785)  	chr6:138182417-138214040(probes 647664:647674)    	chr6:136961326-138830871(probes 646875:648076)    	0.00090582	  0.0046839		Actual Copy Change Given	0.0086135	0.0038373	-0.0090383	0.001061	0.43159	-0.0096806	0.71923	0.015114	0.0080567	0.023426	-0.010922	0.014466	0.0023807	0.0022193	-0.28132	-0.0021819	-1.2929	0.0033299	-1.0477	0.010288	0.0030562	-0.00069303	0.004617	-0.10552	-0.0069195	-0.71444	-0.64722	-1.2929	
Deletion Peak  7 - CN values	7p21.1  	chr7:9667988-20260876(probes 670446:676404)        	chr7:17056720-17800815(probes 675246:675247)        	chr7:17044889-17808648(probes 675238:675249)        	0.10783	    0.11053		Actual Copy Change Given	-0.0041546	0.0072729	0.097106	0.00041593	0.76926	0.022304	0.75343	0.013826	0	0.012237	0.05025	0.00027402	0.75406	-0.0027707	0.00027728	0.0024969	0.018791	0.0014241	-0.0018014	1.0293	-0.49913	0.59674	0.62617	-0.0013858	0.51594	-0.0013858	0.049256	-0.72668	
Deletion Peak  8 - CN values	8p23.1  	chr8:1-24783837(probes 748233:762127)               	chr8:11278320-11328181(probes 753096:753150)        	chr8:11292086-11309276(probes 753119:753139)        	0.22025	    0.21969		Actual Copy Change Given	0.0027745	-0.0029614	0.019083	-0.0054159	-0.66871	0.36977	-0.0060904	-0.074411	-0.0040162	-1.2929	-0.031496	-0.021566	0.0026583	0.00069327	0.0040243	-0.010784	0.058081	0.001803	-0.025209	-0.0057225	-0.0019888	0.59386	-0.011105	-0.0030475	-0.50795	-0.024277	-0.32693	0.001803	
Deletion Peak  9 - CN values	8q12.1  	chr8:54623401-71525707(probes 776712:786694)      	chr8:59713200-60034328(probes 779839:780073)        	chr8:59869733-59872874(probes 779957:779958)        	0.13249	    0.12824		Actual Copy Change Given	0.0027745	-0.0097327	0.019083	-0.0013858	-0.16307	0.38237	-0.0060904	-0.089434	-0.0040162	-0.91432	0.016286	0.0045767	-0.0049619	0.0073609	0.0040243	-0.010784	0.058081	0.001803	-0.010508	-0.0057225	-0.0019888	-0.66513	-0.011105	-0.0030475	-0.0041546	-0.011022	-0.32693	0.001803	
Deletion Peak 10 - CN values	9p21.3  	chr9:21865498-22448737(probes 843255:843619)      	chr9:21959052-21977193(probes 843306:843307)        	chr9:21420139-23517122(probes 842981:844292)        	1.9824e-07	 1.9824e-07		Actual Copy Change Given	-0.0073339	-0.0013805	-0.42429	0.0033299	0.022865	0.4996	-1.2929	-0.00041585	-0.0069195	-1.2929	-0.020456	-0.0023855	-0.0053768	0.0065262	-0.27643	-0.0030475	-1.2929	0.0038854	-0.0027707	-0.0056757	-0.0060177	0.0070826	0.012376	-0.0027707	-0.50277	-0.6691	-1.2159	-0.69523	
Deletion Peak 11 - CN values	10q23.31	chr10:89574877-93668989(probes 950050:952857)    	chr10:89617402-89735596(probes 950078:950265)      	chr10:89602998-109492927(probes 950068:962105)    	0.0074196	  0.0074196		Actual Copy Change Given	-0.0020784	-0.00074539	-0.021373	-0.0036011	0.2321	0.10521	-0.011164	0	-0.0081624	-0.0020644	0.0019418	-0.0081657	-0.003717	0.00013863	0.0023581	-0.0015243	-0.0034627	-0.63235	0	-0.01354	-0.006505	-1.0227	-0.62188	-0.0055375	-0.49569	-0.009171	0.00083195	-0.68961	
Deletion Peak 12 - CN values	13q14.2 	chr13:43424188-73307526(probes 1145319:1160514)  	chr13:48984816-49003156(probes 1148811:1148835)    	chr13:48971579-49014333(probes 1148803:1148850)    	0.031642	   0.079699		Actual Copy Change Given	-0.029721	0.0029997	-0.038014	0.0024969	0.13089	-0.025893	0.027357	-0.8283	0.49666	0.013213	-0.0033243	-0.00083486	0.00043848	-0.0014296	-0.0022168	-0.007472	0.021744	-0.84995	0.0075	-0.011887	0.5393	-0.013184	-1.1532	-0.0023553	-0.0077482	-0.0026322	0.003191	-0.0056757	
Deletion Peak 13 - CN values	13q33.3 	chr13:99510088-115169878(probes 1176688:1186720)	chr13:107820390-108522799(probes 1182250:1182869)	chr13:101863055-115169878(probes 1178142:1186720)	0.082511	    0.12824		Actual Copy Change Given	-0.030211	0.0029997	-0.038014	-0.0038779	0.11778	-0.025893	-0.82097	-0.87424	0.46844	0.013213	-0.079609	-0.00083486	0.00043848	-0.00038995	-0.0022168	-0.007472	0.02001	0.011171	0.003191	-0.011887	-0.57851	-0.013184	-0.63569	-0.0023553	-0.0077482	-0.0026322	-0.03159	-0.0056757	
Deletion Peak 14 - CN values	15q15.1 	chr15:35837298-48066663(probes 1241381:1248388)  	chr15:42129513-42186481(probes 1245338:1245351)    	chr15:39385495-45423888(probes 1243865:1246668)    	0.012316	    0.24209		Actual Copy Change Given	-0.37335	0.0042496	-0.0049844	-0.00055444	-0.63491	-0.020138	-0.0011087	-0.83954	0.48251	-0.010301	-0.0037395	0.0056886	-0.015582	-0.0037395	0.0043021	0.0013868	-0.012162	-0.84267	0.44664	0.019363	-0.54451	-0.63481	-0.60767	-0.0011087	-0.48858	0.0022193	-0.0029908	0.027778	
Deletion Peak 15 - CN values	15q21.1 	chr15:44851245-45036916(probes 1246517:1246596)  	chr15:44956587-45013397(probes 1246559:1246581)    	chr15:39385495-45423888(probes 1243865:1246668)    	0.00049172	   0.005622		Actual Copy Change Given	-0.37335	0.0042496	-0.0049844	-0.00055444	-0.63491	-0.020138	-0.0011087	-0.87673	0.48251	-0.010301	-0.0037395	0.0056886	-0.015582	-0.0037395	0.0043021	0.0013868	-0.012162	-0.84267	0.44664	0.019363	-0.54451	-0.63481	-1.2468	-0.0011087	-0.48858	0.0022193	-0.0029908	-0.72482	
Deletion Peak 16 - CN values	16p13.13	chr16:8886383-12754094(probes 1284654:1287451)    	chr16:10970628-11020236(probes 1286211:1286257)    	chr16:11000849-11004362(probes 1286235:1286236)    	0.24209	    0.24209		Actual Copy Change Given	-0.013264	-0.0065572	0.4375	0.00069327	-0.18559	-0.94276	0.016146	-0.9156	-0.0091286	0.0058309	-0.0033243	-0.0097191	-0.86805	-0.0085766	0.0013868	0.0057313	-0.033814	0.001803	0.031718	0.0091579	0.0013868	0.014616	0.73625	-0.0049844	0.014609	-0.015674	1.0536	-0.0026322	
Deletion Peak 17 - CN values	16q23.1 	chr16:78129058-79627770(probes 1313969:1315334)  	chr16:78129058-79247026(probes 1313969:1314982)    	chr16:78583258-78586506(probes 1314476:1314477)    	0.21211	    0.21969		Actual Copy Change Given	-0.013264	-0.0023675	0.4375	-0.88109	-0.18559	-0.017254	-0.0037395	-0.89369	-0.0091286	-0.92657	-0.033541	-0.013956	0.74559	-0.0085766	0.0013868	0.0057313	-0.020001	0.020763	0.51594	0.024268	-0.062615	0.00013863	-0.59419	-0.0049844	0.014609	-0.015674	0.32511	-0.0026322	
Deletion Peak 18 - CN values	17q24.1 	chr17:62970616-63134027(probes 1349231:1349318)  	chr17:63003700-63057650(probes 1349247:1349280)    	chr17:62948574-63223948(probes 1349220:1349386)    	0.01508	    0.01508		Actual Copy Change Given	-0.00069303	-0.0044835	-0.86003	-0.0044312	0.040185	0.37726	0.023286	-0.0071958	-0.0070576	-0.02384	-0.0018014	0.0038821	-1.2929	-0.012703	-0.005814	-0.00018913	-0.030131	-0.86578	-0.02151	0.016845	-0.011749	0.021884	0.038489	-0.0027707	0.017544	-0.019726	-0.0067153	-0.76569	
Deletion Peak 19 - CN values	19p13.2 	chr19:2006286-10467501(probes 1401569:1404672)    	chr19:8017820-8073463(probes 1403543:1403560)        	chr19:8042237-8053104(probes 1403552:1403553)        	0.11053	    0.11053		Actual Copy Change Given	-0.029857	-0.014142	0.00458	-0.005814	0.11284	-0.039258	0.036088	-0.035783	-0.011198	-0.074678	-0.038367	-0.020827	-0.0092442	-0.011611	-0.0089906	-0.0040162	-0.04211	-0.0029091	-0.03817	0.0063871	-0.031496	0.025671	-0.62874	-0.023703	0.0065262	-0.072808	-0.33387	-0.015054	
