		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	82 (14%)	489	0.60653	1	0.13113	1	0.48353	1	0.24709	1	9.9999e-06	0.00774	0.67464	1	0.50128	1	0.084299	1	0.34189	1	0.27295	1
1q gain	89 (16%)	482	0.076749	1	0.088649	1	0.12892	1	0.62659	1	9.9999e-06	0.00774	0.26047	1	0.5787	1	0.25671	1	0.82565	1	0.50498	1
2p gain	36 (6%)	535	0.45688	1	0.68159	1	0.37568	1	0.1582	1	0.00016	0.109	0.18775	1	0.57765	1	0.41527	1	1	1	0.53608	1
2q gain	35 (6%)	536	0.63975	1	0.86369	1	0.16217	1	0.20152	1	2e-04	0.136	0.18925	1	0.92145	1	0.41342	1	0.77094	1	0.17715	1
3p gain	57 (10%)	514	0.00046	0.307	0.02824	1	0.66788	1	0.02634	1	9.9999e-06	0.00774	0.04096	1	0.63484	1	0.34102	1	0.81164	1	0.2553	1
3q gain	62 (11%)	509	0.00089999	0.595	0.096429	1	0.9226	1	0.076469	1	9.9999e-06	0.00774	0.01643	1	0.62526	1	0.30419	1	0.51629	1	0.15098	1
4p gain	36 (6%)	535	0.24129	1	0.6135	1	0.48565	1	0.51895	1	0.00298	1	0.82594	1	0.75837	1	0.55121	1	0.61599	1	0.79101	1
4q gain	33 (6%)	538	0.31166	1	0.31862	1	0.4946	1	0.54115	1	0.01089	1	0.62242	1	0.92651	1	0.6871	1	0.36638	1	0.66283	1
5p gain	49 (9%)	522	0.11473	1	0.15568	1	0.17599	1	0.34437	1	9.9999e-06	0.00774	0.62116	1	0.28054	1	0.52621	1	0.12803	1	0.23052	1
5q gain	41 (7%)	530	0.14135	1	0.23223	1	0.11777	1	0.054999	1	5e-05	0.0351	0.38116	1	0.38975	1	0.29601	1	0.16852	1	0.39884	1
6p gain	24 (4%)	547	0.01214	1	0.11802	1	0.87796	1	0.16011	1	0.077319	1	0.31888	1	0.81217	1	0.58325	1	1	1	1	1
6q gain	23 (4%)	548	0.00174	1	0.03701	1	0.78414	1	0.10295	1	0.0067399	1	0.064779	1	0.93185	1	0.52904	1	0.81032	1	1	1
7p gain	463 (81%)	108	9.9999e-06	0.00774	9.9999e-06	0.00774	0.00039	0.262	9.9999e-06	0.00774	9.9999e-06	0.00774	0.00172	1	0.00207	1	0.0025	1	0.01453	1	3e-05	0.0215
7q gain	469 (82%)	102	9.9999e-06	0.00774	9.9999e-06	0.00774	0.00106	0.694	0.00012	0.0829	9.9999e-06	0.00774	0.00016	0.109	0.10438	1	0.04404	1	0.054959	1	0.00166	1
8p gain	52 (9%)	519	4e-05	0.0284	0.00064999	0.432	0.063059	1	0.55702	1	9.9999e-06	0.00774	0.088739	1	0.43286	1	0.7573	1	0.13927	1	0.67366	1
8q gain	59 (10%)	512	9.9999e-06	0.00774	2e-05	0.0144	0.04054	1	0.45174	1	9.9999e-06	0.00774	0.19818	1	0.43466	1	0.75433	1	0.12461	1	0.51524	1
9p gain	47 (8%)	524	0.00334	1	0.03046	1	0.702	1	0.4336	1	5e-05	0.0351	0.15807	1	0.79812	1	0.36594	1	0.42898	1	0.11333	1
9q gain	72 (13%)	499	0.088349	1	0.050629	1	0.56077	1	0.12745	1	6.9999e-05	0.0489	0.03575	1	0.32036	1	0.38532	1	0.66897	1	0.078419	1
10p gain	12 (2%)	559	0.00106	0.694	8.9999e-05	0.0625	0.11798	1	0.058919	1	0.0029	1	NA	NA	0.3085	1	0.56189	1	NA	NA	NA	NA
10q gain	3 (1%)	568	0.5572	1	1	1	0.051539	1	0.796	1	0.19567	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
11p gain	17 (3%)	554	0.90351	1	0.87951	1	0.24303	1	0.94317	1	0.22043	1	NA	NA	0.86946	1	0.53217	1	0.69492	1	1	1
11q gain	14 (2%)	557	0.18546	1	0.065139	1	0.21621	1	0.36214	1	0.12345	1	NA	NA	0.86977	1	1	1	1	1	1	1
12p gain	59 (10%)	512	0.67147	1	0.79411	1	0.64429	1	0.16481	1	4e-05	0.0284	0.5916	1	0.23406	1	0.66389	1	0.00413	1	0.075869	1
12q gain	48 (8%)	523	0.5225	1	0.95443	1	0.53771	1	0.0099299	1	0.00073999	0.49	0.75102	1	0.31181	1	0.29914	1	0.02219	1	0.12377	1
13q gain	10 (2%)	561	0.053159	1	0.49721	1	0.18135	1	0.82237	1	0.01697	1	0.36715	1	0.8934	1	1	1	0.42277	1	1	1
14q gain	22 (4%)	549	0.43059	1	0.77816	1	0.01017	1	0.80604	1	0.82843	1	NA	NA	0.47035	1	0.85769	1	0.42584	1	0.32785	1
15q gain	24 (4%)	547	0.060919	1	0.11034	1	0.56806	1	0.13353	1	8.9999e-05	0.0625	NA	NA	0.53608	1	0.34066	1	0.03502	1	0.38548	1
16p gain	38 (7%)	533	0.0077699	1	0.064819	1	0.41273	1	0.27022	1	2e-05	0.0144	NA	NA	0.6171	1	0.47574	1	1	1	1	1
16q gain	37 (6%)	534	0.01884	1	0.0055099	1	0.35807	1	0.066709	1	0.00016	0.109	NA	NA	0.75436	1	0.41845	1	0.42271	1	0.73583	1
17p gain	48 (8%)	523	0.00037	0.249	0.02001	1	0.079699	1	0.03996	1	7.9999e-05	0.0557	0.057289	1	0.1498	1	0.23721	1	0.33753	1	0.39143	1
17q gain	59 (10%)	512	0.00101	0.665	0.04412	1	0.14953	1	0.04366	1	9.9999e-06	0.00774	0.17872	1	0.078659	1	0.1613	1	0.9446	1	0.61679	1
18p gain	58 (10%)	513	9.9999e-06	0.00774	0.00039	0.262	0.1574	1	0.36741	1	9.9999e-06	0.00774	0.37722	1	0.42317	1	0.14999	1	0.01896	1	0.097449	1
18q gain	58 (10%)	513	9.9999e-06	0.00774	0.00072999	0.485	0.15892	1	0.4322	1	9.9999e-06	0.00774	0.51508	1	0.69198	1	0.47947	1	0.01859	1	0.11185	1
19p gain	224 (39%)	347	9.9999e-06	0.00774	3e-05	0.0215	0.080929	1	0.00043	0.287	9.9999e-06	0.00774	0.00246	1	0.0090799	1	3e-05	0.0215	0.18959	1	0.65473	1
19q gain	197 (35%)	374	9.9999e-06	0.00774	9.9999e-06	0.00774	0.11596	1	0.00425	1	9.9999e-06	0.00774	0.01871	1	0.04669	1	0.00098999	0.652	0.062819	1	0.3407	1
20p gain	220 (39%)	351	9.9999e-06	0.00774	9.9999e-06	0.00774	0.00437	1	9.9999e-06	0.00774	9.9999e-06	0.00774	0.10066	1	0.053059	1	0.00192	1	0.79612	1	0.11679	1
20q gain	218 (38%)	353	9.9999e-06	0.00774	9.9999e-06	0.00774	0.00286	1	9.9999e-06	0.00774	2e-05	0.0144	0.02916	1	0.03579	1	0.00102	0.67	0.79721	1	0.12092	1
21q gain	63 (11%)	508	0.00127	0.827	0.0072799	1	0.01179	1	0.00389	1	0.00034	0.229	0.16612	1	0.31815	1	0.02668	1	0.0187	1	0.33281	1
22q gain	34 (6%)	537	9.9999e-06	0.00774	0.00308	1	0.46895	1	0.21587	1	2e-04	0.136	0.18611	1	0.21149	1	0.0353	1	0.24361	1	0.19284	1
xq gain	16 (3%)	555	0.25223	1	0.94771	1	0.98471	1	0.36125	1	0.66042	1	0.62372	1	0.78958	1	1	1	0.03876	1	0.25879	1
1p loss	16 (3%)	555	0.63935	1	0.82838	1	0.94043	1	0.19467	1	0.087739	1	0.67707	1	0.34058	1	0.17973	1	0.10957	1	0.01839	1
1q loss	15 (3%)	556	0.83075	1	0.97769	1	0.85429	1	0.36322	1	0.3678	1	0.67816	1	0.33989	1	0.20855	1	0.51773	1	0.083529	1
2p loss	32 (6%)	539	0.03412	1	0.03407	1	0.31176	1	0.66346	1	0.00036	0.242	0.0050499	1	0.93515	1	0.21801	1	0.2409	1	0.22642	1
2q loss	32 (6%)	539	0.03369	1	0.03457	1	0.31194	1	0.66267	1	0.00034	0.229	0.0053699	1	0.82694	1	0.13268	1	0.082989	1	0.074799	1
3p loss	40 (7%)	531	0.91004	1	0.78892	1	0.71682	1	0.14855	1	0.00018	0.122	0.057439	1	0.23646	1	0.90073	1	0.63929	1	0.23067	1
3q loss	34 (6%)	537	0.23037	1	0.12912	1	0.50919	1	0.67765	1	4e-05	0.0284	0.11776	1	0.78751	1	0.32089	1	0.88938	1	0.18266	1
4p loss	54 (9%)	517	0.079439	1	0.00331	1	0.03374	1	0.22472	1	0.0094899	1	1	1	0.29407	1	0.12129	1	0.74648	1	1	1
4q loss	55 (10%)	516	0.00097999	0.647	0.00063999	0.426	0.01911	1	0.15221	1	4e-04	0.268	0.01057	1	0.73327	1	0.4821	1	0.55962	1	1	1
5p loss	42 (7%)	529	9.9999e-06	0.00774	3e-05	0.0215	0.00182	1	0.095729	1	0.00016	0.109	0.03537	1	0.93908	1	0.54442	1	0.34195	1	0.052139	1
5q loss	43 (8%)	528	5e-05	0.0351	4e-05	0.0284	0.00104	0.682	0.18553	1	0.00014	0.0963	0.03501	1	0.94253	1	0.6259	1	0.22187	1	0.04285	1
6p loss	86 (15%)	485	0.56669	1	0.334	1	0.77156	1	0.70622	1	9.9999e-06	0.00774	0.30557	1	0.79434	1	0.30073	1	0.87095	1	0.59619	1
6q loss	124 (22%)	447	0.94005	1	0.57834	1	0.56756	1	0.94065	1	9.9999e-06	0.00774	0.1899	1	0.96939	1	0.64583	1	0.4984	1	0.29318	1
7p loss	8 (1%)	563	0.02212	1	0.03408	1	0.45692	1	0.04105	1	0.20541	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
7q loss	6 (1%)	565	0.099479	1	0.30375	1	0.94052	1	0.12505	1	0.59113	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
8p loss	58 (10%)	513	0.5458	1	0.44086	1	0.18014	1	0.77713	1	0.067839	1	0.59071	1	0.9059	1	0.95007	1	0.57544	1	0.3911	1
8q loss	42 (7%)	529	0.61765	1	0.1502	1	0.02189	1	0.80779	1	0.01422	1	0.25757	1	0.85866	1	0.65528	1	0.45707	1	0.14681	1
9p loss	200 (35%)	371	0.0091699	1	0.13448	1	0.52668	1	0.44598	1	0.6875	1	0.56871	1	0.6179	1	0.04669	1	0.02201	1	0.0088499	1
9q loss	91 (16%)	480	0.37348	1	0.069179	1	0.11469	1	0.20571	1	0.33343	1	0.32371	1	0.36599	1	0.11809	1	0.75269	1	0.17899	1
10p loss	477 (84%)	94	9.9999e-06	0.00774	9.9999e-06	0.00774	0.01139	1	0.00014	0.0963	9.9999e-06	0.00774	0.03413	1	0.00216	1	0.0167	1	0.22313	1	0.01315	1
10q loss	488 (85%)	83	9.9999e-06	0.00774	9.9999e-06	0.00774	0.0056999	1	0.00012	0.0829	9.9999e-06	0.00774	0.00238	1	0.00012	0.0829	0.00442	1	0.25981	1	0.02178	1
11p loss	97 (17%)	474	9.9999e-06	0.00774	9.9999e-06	0.00774	0.82983	1	0.0142	1	9.9999e-06	0.00774	0.02577	1	0.7298	1	0.15887	1	0.091719	1	0.085709	1
11q loss	92 (16%)	479	9.9999e-06	0.00774	8.9999e-05	0.0625	0.93355	1	0.060879	1	9.9999e-06	0.00774	0.27616	1	0.9354	1	0.56947	1	0.34495	1	0.53606	1
12p loss	59 (10%)	512	0.088389	1	0.065299	1	0.47291	1	0.80912	1	0.00274	1	0.89976	1	0.15548	1	0.057929	1	1	1	0.66164	1
12q loss	58 (10%)	513	0.10739	1	0.062419	1	0.35179	1	0.59027	1	4e-05	0.0284	0.51653	1	0.18149	1	0.3949	1	1	1	0.66171	1
13q loss	183 (32%)	388	4e-05	0.0284	0.00165	1	0.75032	1	0.58932	1	9.9999e-06	0.00774	0.00119	0.776	0.59534	1	0.01702	1	0.04955	1	0.40149	1
14q loss	146 (26%)	425	9.9999e-06	0.00774	7.9999e-05	0.0557	0.44735	1	0.48269	1	9.9999e-06	0.00774	0.01352	1	0.81276	1	0.093079	1	0.10567	1	0.60136	1
15q loss	102 (18%)	469	5e-05	0.0351	2e-05	0.0144	0.00378	1	0.0038	1	9.9999e-06	0.00774	0.00222	1	0.03197	1	0.01166	1	0.00336	1	0.02198	1
16p loss	63 (11%)	508	0.28722	1	0.85269	1	0.65984	1	0.73519	1	0.02014	1	0.42986	1	0.45389	1	0.18893	1	0.56511	1	0.64679	1
16q loss	83 (15%)	488	0.061809	1	0.42953	1	0.46316	1	0.89751	1	0.01016	1	0.82242	1	0.04785	1	0.01823	1	0.66286	1	0.59775	1
17p loss	64 (11%)	507	0.0201	1	0.02121	1	0.65271	1	0.58321	1	9.9999e-06	0.00774	0.090189	1	0.21193	1	0.34976	1	0.30183	1	0.70536	1
17q loss	42 (7%)	529	0.005	1	0.059679	1	0.25279	1	0.04253	1	3e-05	0.0215	0.25368	1	0.48123	1	0.34002	1	0.14496	1	0.10915	1
18p loss	69 (12%)	502	0.04793	1	0.0318	1	0.35855	1	0.21956	1	3e-05	0.0215	0.27032	1	0.063219	1	0.0065999	1	0.13471	1	0.59937	1
18q loss	61 (11%)	510	0.1449	1	0.0069499	1	0.62108	1	0.23839	1	6.9999e-05	0.0489	0.2596	1	0.0095799	1	0.00334	1	0.41559	1	0.12011	1
19p loss	25 (4%)	546	0.00207	1	0.0071899	1	0.14872	1	0.41007	1	0.01397	1	0.00203	1	0.01992	1	0.01075	1	0.83925	1	0.80174	1
19q loss	33 (6%)	538	0.00211	1	0.01042	1	0.39199	1	0.10429	1	0.00072999	0.485	0.090369	1	0.080409	1	0.33745	1	0.7823	1	0.48515	1
20p loss	18 (3%)	553	0.00021	0.142	3e-05	0.0215	0.03612	1	0.094859	1	5e-05	0.0351	NA	NA	0.41309	1	0.46009	1	0.01038	1	0.00207	1
20q loss	16 (3%)	555	0.00154	1	0.00015	0.103	0.36394	1	0.26602	1	0.00015	0.103	NA	NA	0.41478	1	0.45943	1	0.03867	1	0.01269	1
21q loss	40 (7%)	531	0.02131	1	0.00112	0.731	0.03455	1	0.31874	1	0.00025	0.169	0.067229	1	0.01186	1	0.083799	1	0.82418	1	1	1
22q loss	179 (31%)	392	0.72076	1	0.60598	1	0.20853	1	0.93317	1	9.9999e-06	0.00774	0.15924	1	0.9081	1	0.137	1	0.20091	1	0.092719	1
xq loss	105 (18%)	466	0.02059	1	0.02429	1	0.14739	1	0.1605	1	9.9999e-06	0.00774	0.12402	1	0.96002	1	0.55441	1	0.41497	1	0.95976	1
