
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/getCNExpCorrelation/broadinstitute.org/cancer.genome.analysis/00287/22/findCNExpCorrelation.R")
> result <- getmRNACor("-r/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Gistic2/GBM-TP/10005907/GDAC_Gistic2Report_10015626/all_data_by_genes.txt", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-TP/9825048/GDAC_MergeDataFiles_5131616/GBM-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt", "-fHybridization.REF", "-tnone", "-wpearson", "-oGBM-TP.CORS.tsv", "-pOUTPUT.CORS.png", "-d/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/getCNExpCorrelation/broadinstitute.org/cancer.genome.analysis/00287/22/", "-aSTATS.QA.tsv")
> q(save="no")
