
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_miRDirectTargetsReport/broadinstitute.org/cancer.genome.analysis/00144/41/GDAC_miRDirectTargetsReport.R")
> result <- main("-h/xchip/tcga/Tools/Nozzle/v1.current", "-s/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_IntersectSamples/GBM-TP/10006143/gdac_intersectsamples.summary.gct", "-r/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CorrelateGenes/GBM-TP/10006708/gdac_correlategenes.summary.gct", "-d/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.summary.gct", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.mir.distr", "-g/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.mrna.distr", "-a/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.mirna.topnodes", "-b/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.mrna.topnodes", "-w/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.corr.txt", "-x/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.corr.3db.txt", "-y/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.mirna.sortednodes", "-z/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DirectTargets/GBM-TP/10006809/gdac_directtargets.mrna.sortednodes")
> q(save="no")
