		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	68 (13%)	443	8.9999e-05	0.0626	0.0062999	1	0.9692	1	0.757	1	0.86133	1	0.87199	1	0.69869	1	0.0079699	1	0.8515	1	0.63449	1
1q gain	117 (23%)	394	2e-05	0.0145	9.9999e-06	0.008	0.2902	1	0.769	1	0.00017	0.115	0.00017	0.115	0.00164	1	0.00414	1	0.0056199	1	9.9999e-05	0.0694
2p gain	90 (18%)	421	9.9999e-06	0.008	9.9999e-06	0.008	0.04527	1	0.42291	1	0.051239	1	0.00209	1	0.12667	1	0.0086799	1	0.099959	1	9.9999e-06	0.008
2q gain	69 (14%)	442	9.9999e-06	0.008	9.9999e-06	0.008	0.52837	1	0.76398	1	0.062439	1	0.00035	0.232	0.24325	1	0.01483	1	0.14203	1	5e-05	0.0353
3p gain	79 (15%)	432	0.0086799	1	0.00017	0.115	0.065269	1	0.75594	1	0.00116	0.74	0.04667	1	0.0091499	1	0.17798	1	0.04337	1	0.21275	1
3q gain	249 (49%)	262	9.9999e-06	0.008	9.9999e-06	0.008	0.68582	1	0.23046	1	0.00072999	0.472	0.0244	1	0.00107	0.684	0.6377	1	0.078639	1	0.0059699	1
4p gain	39 (8%)	472	0.00215	1	0.00025	0.167	0.59775	1	0.46001	1	0.051189	1	0.14877	1	0.11982	1	0.44161	1	0.46765	1	0.61054	1
4q gain	35 (7%)	476	0.10904	1	0.20363	1	1	1	0.76917	1	0.62187	1	0.067559	1	0.9272	1	0.87753	1	0.94535	1	0.93996	1
5p gain	195 (38%)	316	9.9999e-06	0.008	0.00080999	0.522	0.96092	1	0.83341	1	0.083649	1	0.44481	1	0.61202	1	0.03124	1	0.93472	1	0.63136	1
5q gain	65 (13%)	446	0.03241	1	0.58116	1	0.61682	1	0.88777	1	0.78191	1	0.75215	1	0.72813	1	0.68714	1	0.46688	1	0.63449	1
6p gain	80 (16%)	431	9.9999e-06	0.008	0.00245	1	0.49977	1	0.74617	1	0.66267	1	0.03771	1	0.57426	1	0.11457	1	0.25097	1	0.55349	1
6q gain	61 (12%)	450	2e-05	0.0145	0.03778	1	0.19409	1	0.073039	1	0.077379	1	0.03177	1	0.12377	1	0.85143	1	0.057499	1	0.42527	1
7p gain	180 (35%)	331	9.9999e-06	0.008	9.9999e-06	0.008	0.63206	1	0.50355	1	0.27458	1	0.11928	1	0.67871	1	9.9999e-06	0.008	0.45596	1	4e-04	0.264
7q gain	123 (24%)	388	9.9999e-06	0.008	9.9999e-06	0.008	0.17566	1	0.63386	1	0.47454	1	0.82181	1	0.0076899	1	0.00035	0.232	0.49283	1	0.00214	1
8p gain	148 (29%)	363	0.00169	1	0.21707	1	0.58944	1	0.63843	1	0.35489	1	0.17028	1	0.67689	1	0.47915	1	0.4656	1	0.68623	1
8q gain	304 (59%)	207	9.9999e-06	0.008	2e-05	0.0145	0.079569	1	0.88656	1	0.1171	1	0.00215	1	0.083149	1	0.0071199	1	0.0083199	1	0.0056899	1
9p gain	102 (20%)	409	9.9999e-06	0.008	3e-05	0.0214	0.50718	1	0.097829	1	0.00131	0.823	0.01132	1	0.0081499	1	0.02545	1	0.058399	1	0.04341	1
9q gain	136 (27%)	375	9.9999e-06	0.008	0.0047	1	0.12834	1	0.25202	1	0.25419	1	0.02765	1	0.65475	1	0.12718	1	0.28108	1	0.37737	1
10p gain	40 (8%)	471	0.057999	1	3e-05	0.0214	0.58816	1	0.065739	1	0.04018	1	0.00012	0.0826	0.04305	1	0.01424	1	0.88514	1	0.0227	1
10q gain	34 (7%)	477	0.00064999	0.421	0.21649	1	0.099169	1	0.39871	1	0.62233	1	0.16059	1	0.59141	1	0.10518	1	0.84816	1	0.03619	1
11p gain	65 (13%)	446	2e-05	0.0145	2e-05	0.0145	0.94161	1	0.57816	1	0.20466	1	0.0153	1	0.054249	1	0.19781	1	0.19124	1	0.0065399	1
11q gain	70 (14%)	441	0.00019	0.128	5e-05	0.0353	0.52958	1	0.58105	1	0.23404	1	0.01293	1	0.2982	1	0.071509	1	0.91478	1	0.084169	1
12p gain	143 (28%)	368	9.9999e-06	0.008	9.9999e-06	0.008	0.01585	1	0.82302	1	0.01627	1	0.00184	1	0.066069	1	0.03438	1	0.50175	1	0.01118	1
12q gain	87 (17%)	424	9.9999e-06	0.008	0.00122	0.771	0.114	1	0.18532	1	0.082929	1	0.00317	1	0.57705	1	0.35496	1	0.7564	1	0.40237	1
13q gain	56 (11%)	455	9.9999e-06	0.008	0.00251	1	0.59355	1	0.73538	1	0.01368	1	0.01907	1	0.2511	1	0.01247	1	0.27162	1	0.0311	1
14q gain	148 (29%)	363	9.9999e-06	0.008	9.9999e-06	0.008	0.21801	1	0.096689	1	0.01402	1	0.00058999	0.385	0.01743	1	2e-05	0.0145	0.0076799	1	9.9999e-05	0.0694
15q gain	71 (14%)	440	0.081719	1	0.0084299	1	0.38612	1	0.58663	1	0.21619	1	0.56451	1	0.97331	1	0.00331	1	0.83761	1	0.29081	1
16p gain	104 (20%)	407	9.9999e-06	0.008	9.9999e-06	0.008	0.33028	1	0.17742	1	0.42535	1	0.0028	1	0.72569	1	0.00011	0.0758	0.56982	1	0.03095	1
16q gain	104 (20%)	407	9.9999e-06	0.008	9.9999e-06	0.008	0.50419	1	0.89285	1	0.15407	1	0.00282	1	0.27074	1	4e-05	0.0284	0.02511	1	0.01597	1
17p gain	66 (13%)	445	9.9999e-06	0.008	4e-05	0.0284	0.60256	1	0.90232	1	0.0079499	1	0.01323	1	0.090009	1	0.0095299	1	0.27128	1	0.02094	1
17q gain	84 (16%)	427	2e-05	0.0145	0.00052999	0.347	0.58276	1	0.67713	1	0.1279	1	0.03214	1	0.48741	1	0.01397	1	0.97445	1	0.04161	1
18p gain	119 (23%)	392	9.9999e-06	0.008	9.9999e-06	0.008	0.33122	1	0.31921	1	0.37391	1	9.9999e-06	0.008	0.66344	1	0.01485	1	0.80392	1	0.00101	0.646
18q gain	48 (9%)	463	0.00219	1	9.9999e-06	0.008	0.01521	1	0.02835	1	3e-04	0.199	2e-05	0.0145	5.9999e-05	0.0421	0.21057	1	0.01201	1	0.0080999	1
19p gain	53 (10%)	458	0.0016	1	9.9999e-06	0.008	0.087459	1	0.76988	1	0.01186	1	0.00017	0.115	0.00028	0.186	0.16854	1	0.51898	1	0.3147	1
19q gain	74 (14%)	437	0.03778	1	5.9999e-05	0.0421	0.96147	1	0.7867	1	0.01688	1	0.00087999	0.565	0.00060999	0.396	0.30017	1	0.82741	1	0.2012	1
20p gain	188 (37%)	323	9.9999e-06	0.008	9.9999e-06	0.008	0.95963	1	0.81279	1	0.10416	1	0.02526	1	0.20317	1	0.0079099	1	0.01893	1	0.04726	1
20q gain	198 (39%)	313	9.9999e-06	0.008	9.9999e-06	0.008	0.84196	1	0.8728	1	0.11137	1	0.00068999	0.446	0.16866	1	0.00343	1	0.0024	1	0.0067199	1
21q gain	35 (7%)	476	0.04565	1	0.03273	1	0.01433	1	0.12854	1	0.0071899	1	0.0089299	1	0.1039	1	0.21441	1	0.72866	1	0.33026	1
22q gain	110 (22%)	401	9.9999e-06	0.008	9.9999e-06	0.008	0.15254	1	0.518	1	0.27302	1	0.4179	1	0.00117	0.744	0.04009	1	0.00246	1	4e-05	0.0284
xq gain	87 (17%)	424	9.9999e-06	0.008	0.00189	1	0.25242	1	0.82675	1	0.42627	1	0.30294	1	0.061439	1	0.48155	1	0.64498	1	0.062189	1
1p loss	52 (10%)	459	0.00013	0.0893	9.9999e-06	0.008	0.01887	1	0.20306	1	0.00345	1	0.0061899	1	0.33657	1	0.13565	1	0.21343	1	0.0025	1
1q loss	35 (7%)	476	0.055469	1	0.1346	1	0.78015	1	0.48813	1	0.099109	1	0.01802	1	0.03601	1	0.00081999	0.527	0.053289	1	0.77917	1
2p loss	33 (6%)	478	0.087789	1	0.0073599	1	0.15725	1	0.04504	1	0.10568	1	0.67058	1	0.03384	1	0.84936	1	0.01136	1	0.96517	1
2q loss	42 (8%)	469	0.9303	1	0.056719	1	0.83871	1	0.62383	1	0.74495	1	0.57919	1	0.19729	1	0.9156	1	0.02805	1	0.50663	1
3p loss	287 (56%)	224	9.9999e-06	0.008	9.9999e-06	0.008	0.8295	1	0.67771	1	0.01396	1	9.9999e-05	0.0694	0.1432	1	0.00015	0.102	0.73245	1	4e-05	0.0284
3q loss	60 (12%)	451	0.01327	1	0.23787	1	0.25889	1	0.76658	1	0.60182	1	0.16943	1	0.95253	1	0.0259	1	0.47191	1	0.38547	1
4p loss	186 (36%)	325	9.9999e-06	0.008	9.9999e-06	0.008	0.039	1	0.49573	1	0.00016	0.109	0.00013	0.0893	0.38803	1	0.0032	1	0.02763	1	9.9999e-06	0.008
4q loss	144 (28%)	367	9.9999e-06	0.008	9.9999e-06	0.008	0.47219	1	0.22217	1	0.0079499	1	0.00059999	0.391	0.23946	1	0.01493	1	0.078599	1	6.9999e-05	0.0489
5p loss	50 (10%)	461	2e-05	0.0145	9.9999e-06	0.008	0.41481	1	0.38462	1	0.69036	1	0.10597	1	0.78255	1	0.13606	1	0.12843	1	0.21708	1
5q loss	160 (31%)	351	9.9999e-06	0.008	9.9999e-06	0.008	0.2417	1	0.77335	1	0.20615	1	9.9999e-06	0.008	0.80524	1	2e-05	0.0145	0.73294	1	3e-05	0.0214
6p loss	67 (13%)	444	0.00038	0.251	0.00118	0.748	0.0281	1	0.12837	1	0.02984	1	0.03662	1	0.33422	1	0.48867	1	0.26086	1	0.060459	1
6q loss	67 (13%)	444	0.064179	1	0.0043	1	0.12813	1	0.1237	1	0.78167	1	0.5718	1	0.66488	1	0.12022	1	0.34589	1	0.55872	1
7p loss	28 (5%)	483	0.01992	1	0.02529	1	0.0097099	1	0.63039	1	0.50591	1	0.04653	1	0.30646	1	0.96887	1	0.081089	1	0.75372	1
7q loss	42 (8%)	469	0.19815	1	0.30889	1	0.53112	1	1	1	0.32608	1	0.12834	1	0.04337	1	0.67722	1	0.85667	1	0.47057	1
8p loss	184 (36%)	327	9.9999e-06	0.008	9.9999e-06	0.008	0.55086	1	0.67728	1	0.03685	1	0.00269	1	0.03087	1	0.00023	0.154	0.00075999	0.49	0.00058999	0.385
8q loss	30 (6%)	481	0.075659	1	0.28191	1	0.75662	1	0.8741	1	0.69535	1	0.084529	1	0.20925	1	0.093859	1	0.76693	1	0.60293	1
9p loss	176 (34%)	335	9.9999e-06	0.008	9.9999e-06	0.008	0.70033	1	0.14609	1	0.30293	1	9.9999e-05	0.0694	0.40584	1	8.9999e-05	0.0626	0.33499	1	9.9999e-06	0.008
9q loss	83 (16%)	428	9.9999e-06	0.008	9.9999e-06	0.008	0.99381	1	1	1	0.63525	1	0.34854	1	0.81444	1	0.01029	1	0.13385	1	0.00129	0.813
10p loss	151 (30%)	360	5.9999e-05	0.0421	0.00336	1	0.32033	1	0.23065	1	0.051089	1	0.081499	1	0.096929	1	0.10242	1	0.24921	1	0.03835	1
10q loss	109 (21%)	402	0.00014	0.0958	0.00025	0.167	0.20497	1	0.30212	1	0.01549	1	0.01045	1	0.02072	1	0.10637	1	0.24941	1	0.01821	1
11p loss	134 (26%)	377	9.9999e-06	0.008	2e-04	0.134	0.33492	1	0.28073	1	0.0050499	1	0.071979	1	0.0058999	1	0.36071	1	0.39705	1	0.01326	1
11q loss	164 (32%)	347	9.9999e-05	0.0694	9.9999e-06	0.008	0.25688	1	0.03317	1	0.00491	1	4e-05	0.0284	0.26549	1	0.68549	1	0.39117	1	0.086609	1
12p loss	36 (7%)	475	0.6564	1	0.056849	1	0.64247	1	0.12493	1	0.86114	1	0.87452	1	1	1	0.62724	1	0.3712	1	0.72572	1
12q loss	32 (6%)	479	0.01506	1	0.00179	1	0.87071	1	0.14751	1	0.51162	1	0.93038	1	0.97208	1	0.43354	1	0.19544	1	0.47489	1
13q loss	162 (32%)	349	9.9999e-06	0.008	9.9999e-06	0.008	0.38271	1	0.82745	1	0.00307	1	0.00117	0.744	0.03768	1	0.34408	1	0.33266	1	0.00062999	0.409
14q loss	54 (11%)	457	0.0056099	1	0.00119	0.753	0.03533	1	0.52873	1	5e-05	0.0353	0.00016	0.109	0.00412	1	0.21251	1	0.23809	1	0.0092999	1
15q loss	98 (19%)	413	9.9999e-06	0.008	0.25601	1	0.62828	1	0.34748	1	0.11977	1	0.28744	1	0.72451	1	0.18129	1	0.54038	1	0.10935	1
16p loss	60 (12%)	451	0.00042	0.276	0.01352	1	0.86441	1	0.080509	1	0.0062499	1	0.055529	1	0.96737	1	0.42022	1	0.84172	1	0.5877	1
16q loss	78 (15%)	433	0.0054799	1	9.9999e-06	0.008	0.47856	1	0.2417	1	9.9999e-06	0.008	9.9999e-06	0.008	0.00258	1	0.01738	1	0.00056999	0.373	0.00094999	0.609
17p loss	103 (20%)	408	0.00013	0.0893	0.00192	1	0.38843	1	0.7597	1	0.52608	1	0.11786	1	0.54425	1	0.01455	1	0.2426	1	0.56043	1
17q loss	34 (7%)	477	0.00116	0.74	0.11169	1	0.90188	1	0.50385	1	0.444	1	0.85283	1	0.92215	1	0.68525	1	0.97174	1	0.23695	1
18p loss	101 (20%)	410	0.02126	1	2e-05	0.0145	0.54489	1	0.32823	1	0.27127	1	0.11357	1	0.64449	1	0.0078599	1	0.84796	1	0.14454	1
18q loss	208 (41%)	303	9.9999e-06	0.008	9.9999e-06	0.008	0.31524	1	0.45263	1	0.00218	1	9.9999e-06	0.008	0.0017	1	9.9999e-06	0.008	0.14971	1	5e-05	0.0353
19p loss	93 (18%)	418	0.00022	0.147	7.9999e-05	0.0558	0.71229	1	0.71338	1	0.02268	1	0.0070099	1	0.04088	1	0.00303	1	0.65803	1	0.26577	1
19q loss	82 (16%)	429	0.00015	0.102	5e-05	0.0353	0.12819	1	0.51891	1	0.20491	1	0.087829	1	0.35085	1	0.0116	1	0.79773	1	0.61029	1
20p loss	46 (9%)	465	4e-04	0.264	0.01565	1	0.4729	1	0.76471	1	0.081769	1	0.31458	1	0.32845	1	0.0084999	1	0.0017	1	0.091149	1
20q loss	28 (5%)	483	0.0090599	1	0.0064199	1	0.2257	1	0.58653	1	0.02302	1	0.01808	1	0.02645	1	0.02032	1	0.00025	0.167	0.02716	1
21q loss	179 (35%)	332	9.9999e-06	0.008	9.9999e-06	0.008	0.57215	1	0.98204	1	0.0324	1	0.03834	1	0.53373	1	2e-04	0.134	0.7326	1	0.00019	0.128
22q loss	72 (14%)	439	0.00354	1	0.00127	0.801	0.66645	1	0.65764	1	0.00129	0.813	0.15662	1	0.00049	0.321	0.1797	1	0.00339	1	0.00015	0.102
xq loss	82 (16%)	429	0.00016	0.109	2e-05	0.0145	0.087099	1	0.00215	1	0.03038	1	0.0053199	1	0.01484	1	0.19565	1	0.16895	1	0.097179	1
