		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2q11.2	104 (20%)	407	9.9999e-06	0.0073	9.9999e-06	0.0073	0.50546	1	0.542	1	0.050989	1	0.00034	0.182	0.066569	1	0.00105	0.538	0.14496	1	9.9999e-06	0.0073
amp_2q31.2	108 (21%)	403	9.9999e-06	0.0073	9.9999e-06	0.0073	0.23928	1	0.31674	1	0.19002	1	0.01274	1	0.19835	1	0.0058299	1	0.33353	1	3e-05	0.0172
amp_3q26.33	372 (73%)	139	9.9999e-06	0.0073	9.9999e-06	0.0073	0.12996	1	0.31068	1	9.9999e-06	0.0073	6.9999e-05	0.0392	0.00018	0.0986	0.21612	1	0.04408	1	4e-05	0.0228
amp_5p15.33	231 (45%)	280	9.9999e-06	0.0073	9.9999e-06	0.0073	0.85456	1	0.8277	1	0.1568	1	0.17652	1	0.70011	1	0.079889	1	0.96514	1	0.80409	1
amp_5p12	203 (40%)	308	9.9999e-06	0.0073	4e-05	0.0228	0.58241	1	0.1888	1	0.30608	1	0.10955	1	0.58308	1	0.0346	1	0.99258	1	0.73901	1
amp_6p12.1	107 (21%)	404	9.9999e-06	0.0073	2e-05	0.0118	0.45946	1	0.95166	1	0.85706	1	0.0143	1	0.45436	1	0.00124	0.629	0.92888	1	0.057119	1
amp_6q12	92 (18%)	419	9.9999e-06	0.0073	0.00029	0.156	0.27486	1	0.90085	1	0.86775	1	0.16081	1	0.30118	1	0.22066	1	0.80888	1	0.58804	1
amp_7p11.2	215 (42%)	296	9.9999e-06	0.0073	9.9999e-06	0.0073	0.99737	1	0.67099	1	0.04806	1	0.01055	1	0.71713	1	9.9999e-06	0.0073	0.26642	1	9.9999e-05	0.0554
amp_7q21.3	164 (32%)	347	9.9999e-06	0.0073	9.9999e-06	0.0073	0.33235	1	0.44129	1	0.30687	1	0.28158	1	0.086099	1	0.00027	0.146	0.28775	1	0.00021	0.114
amp_8p11.23	156 (31%)	355	9.9999e-06	0.0073	0.0064599	1	0.80992	1	0.87263	1	0.12469	1	0.01149	1	0.00314	1	0.050779	1	0.29371	1	0.03757	1
amp_8q11.21	305 (60%)	206	9.9999e-06	0.0073	9.9999e-06	0.0073	0.097749	1	0.63439	1	0.00184	0.922	0.00011	0.0607	0.03257	1	0.00028	0.151	0.04788	1	0.00103	0.529
amp_8q24.21	379 (74%)	132	9.9999e-06	0.0073	9.9999e-06	0.0073	0.31742	1	0.44717	1	0.01308	1	2e-05	0.0118	0.064019	1	0.00025	0.135	0.00203	1	7.9999e-05	0.0447
amp_9p24.1	122 (24%)	389	9.9999e-06	0.0073	2e-05	0.0118	0.13735	1	0.24994	1	0.00266	1	0.00103	0.529	0.03475	1	0.0039	1	0.16264	1	0.00432	1
amp_9p23	121 (24%)	390	9.9999e-06	0.0073	2e-05	0.0118	0.38622	1	0.42418	1	0.00361	1	0.00379	1	0.060089	1	0.0068799	1	0.27405	1	0.04835	1
amp_9p13.3	135 (26%)	376	9.9999e-06	0.0073	0.0029	1	0.48477	1	0.12223	1	0.00088999	0.462	0.01595	1	0.00326	1	0.03731	1	0.83947	1	0.21155	1
amp_9q34.3	174 (34%)	337	9.9999e-06	0.0073	0.01717	1	0.23814	1	0.02425	1	0.95574	1	0.38267	1	0.7096	1	0.15815	1	0.93055	1	0.68462	1
amp_11p13	101 (20%)	410	2e-04	0.109	0.00142	0.716	0.46067	1	0.17939	1	0.95818	1	0.22293	1	0.81748	1	0.53616	1	0.31286	1	0.056999	1
amp_11q13.3	223 (44%)	288	9.9999e-06	0.0073	9.9999e-06	0.0073	0.83381	1	0.72821	1	0.16906	1	0.13032	1	0.4127	1	0.0075999	1	0.25734	1	0.21979	1
amp_12p13.33	162 (32%)	349	9.9999e-06	0.0073	9.9999e-06	0.0073	0.04183	1	0.52085	1	0.0091899	1	0.00218	1	0.02237	1	0.02016	1	0.16733	1	0.00259	1
amp_12q15	101 (20%)	410	9.9999e-06	0.0073	0.00057999	0.306	0.067429	1	0.20357	1	0.12684	1	0.067749	1	0.92045	1	0.15254	1	1	1	0.3928	1
amp_13q22.1	104 (20%)	407	9.9999e-06	0.0073	2e-05	0.0118	0.14758	1	0.15593	1	0.32545	1	0.28801	1	0.44001	1	0.02723	1	0.83998	1	0.02644	1
amp_13q34	106 (21%)	405	9.9999e-06	0.0073	5.9999e-05	0.0338	0.25278	1	0.28926	1	0.20186	1	0.28115	1	0.3518	1	0.01202	1	0.33769	1	0.03564	1
amp_15q26.3	102 (20%)	409	0.00169	0.848	0.0087399	1	0.45623	1	0.32813	1	0.60403	1	0.98197	1	0.33936	1	0.0122	1	0.6897	1	0.14637	1
amp_17q12	88 (17%)	423	9.9999e-06	0.0073	9.9999e-06	0.0073	0.18569	1	0.71862	1	0.01073	1	0.01891	1	0.0096499	1	0.00051999	0.277	1	1	0.0074499	1
amp_18p11.31	152 (30%)	359	9.9999e-06	0.0073	9.9999e-06	0.0073	0.52257	1	0.51647	1	0.083279	1	9.9999e-06	0.0073	0.76957	1	5e-04	0.266	0.57157	1	9.9999e-06	0.0073
amp_18q11.2	101 (20%)	410	9.9999e-06	0.0073	7.9999e-05	0.0447	0.51812	1	0.20489	1	0.36843	1	0.01401	1	0.03728	1	0.053689	1	0.82307	1	0.02001	1
amp_20p12.2	189 (37%)	322	4e-05	0.0228	5e-05	0.0283	0.87275	1	0.93431	1	0.089069	1	0.0093799	1	0.15111	1	0.0089599	1	0.0228	1	0.04113	1
amp_20q11.22	224 (44%)	287	9.9999e-06	0.0073	2e-05	0.0118	0.50269	1	0.83341	1	0.10546	1	0.01064	1	0.47071	1	0.01886	1	0.2345	1	0.063999	1
amp_xq28	145 (28%)	366	9.9999e-06	0.0073	2e-05	0.0118	0.639	1	0.19887	1	0.3045	1	0.14726	1	0.15575	1	0.02951	1	0.94948	1	0.0242	1
del_1p36.21	94 (18%)	417	9.9999e-06	0.0073	9.9999e-06	0.0073	0.00081999	0.428	0.0057199	1	9.9999e-06	0.0073	5.9999e-05	0.0338	0.00092999	0.482	0.067499	1	0.04211	1	9.9999e-06	0.0073
del_1p13.2	127 (25%)	384	9.9999e-06	0.0073	9.9999e-06	0.0073	0.02386	1	0.0074699	1	0.02626	1	0.37659	1	0.01823	1	0.00052999	0.281	0.098159	1	2e-05	0.0118
del_1q44	47 (9%)	464	0.00093999	0.486	0.01681	1	0.7305	1	0.90794	1	0.01393	1	0.0042	1	0.00059999	0.316	0.04784	1	0.02296	1	0.27694	1
del_2q21.2	73 (14%)	438	0.82796	1	0.01083	1	0.70272	1	0.20976	1	0.02622	1	0.0067099	1	0.00029	0.156	0.18444	1	0.065729	1	0.070779	1
del_2q22.1	114 (22%)	397	0.068229	1	9.9999e-05	0.0554	0.34824	1	0.83845	1	0.27914	1	0.25354	1	0.1806	1	0.0086499	1	0.89559	1	0.1343	1
del_2q36.2	152 (30%)	359	9.9999e-06	0.0073	9.9999e-06	0.0073	0.092919	1	0.85584	1	0.01074	1	0.01383	1	0.090139	1	0.03302	1	0.12908	1	0.0098099	1
del_3p24.1	357 (70%)	154	9.9999e-06	0.0073	9.9999e-06	0.0073	0.41749	1	0.11501	1	0.0016	0.805	2e-05	0.0118	0.0077099	1	9.9999e-06	0.0073	0.11203	1	9.9999e-06	0.0073
del_3p12.1	332 (65%)	179	9.9999e-06	0.0073	9.9999e-06	0.0073	0.82955	1	0.90076	1	0.01993	1	5e-05	0.0283	0.075169	1	0.00011	0.0607	0.33978	1	9.9999e-06	0.0073
del_4p15.2	201 (39%)	310	9.9999e-06	0.0073	9.9999e-06	0.0073	0.01123	1	0.33674	1	8.9999e-05	0.05	0.00054999	0.291	0.052019	1	0.0062699	1	0.00376	1	9.9999e-06	0.0073
del_4q22.1	164 (32%)	347	9.9999e-06	0.0073	9.9999e-06	0.0073	0.24676	1	0.077039	1	0.0096699	1	0.00272	1	0.21455	1	0.01713	1	0.48589	1	9.9999e-06	0.0073
del_4q35.2	206 (40%)	305	9.9999e-06	0.0073	4e-05	0.0228	0.8424	1	0.18748	1	0.012	1	0.11847	1	0.32347	1	0.00102	0.526	0.41434	1	0.00054999	0.291
del_5q11.2	209 (41%)	302	9.9999e-06	0.0073	9.9999e-06	0.0073	0.13237	1	0.48647	1	0.098459	1	9.9999e-06	0.0073	0.18714	1	9.9999e-06	0.0073	0.38337	1	9.9999e-06	0.0073
del_5q15	219 (43%)	292	9.9999e-06	0.0073	9.9999e-06	0.0073	0.14364	1	0.43424	1	0.10703	1	9.9999e-06	0.0073	0.23545	1	2e-05	0.0118	0.62244	1	9.9999e-06	0.0073
del_5q35.3	195 (38%)	316	9.9999e-06	0.0073	9.9999e-06	0.0073	0.2401	1	0.72022	1	0.01927	1	9.9999e-06	0.0073	0.3434	1	9.9999e-06	0.0073	0.45381	1	9.9999e-06	0.0073
del_6p25.3	93 (18%)	418	0.00034	0.182	9.9999e-06	0.0073	0.04307	1	0.01063	1	0.00226	1	0.096679	1	0.19285	1	0.39594	1	0.6833	1	0.065019	1
del_7q31.1	74 (14%)	437	0.0062099	1	0.17539	1	0.57249	1	0.38062	1	0.51357	1	0.21656	1	0.87366	1	0.33225	1	0.56843	1	0.84613	1
del_7q36.1	127 (25%)	384	0.00014	0.0769	0.36909	1	0.04448	1	0.67587	1	0.77085	1	0.70578	1	0.62393	1	0.3116	1	0.74289	1	0.76122	1
del_8p23.2	294 (58%)	217	9.9999e-06	0.0073	9.9999e-06	0.0073	0.27881	1	0.32475	1	0.00121	0.615	5e-05	0.0283	0.00218	1	0.00067999	0.356	0.00022	0.119	9.9999e-06	0.0073
del_9p23	233 (46%)	278	9.9999e-06	0.0073	9.9999e-06	0.0073	0.28052	1	0.11311	1	0.82146	1	0.00024	0.13	0.7695	1	0.00029	0.156	0.25237	1	9.9999e-06	0.0073
del_9p21.3	292 (57%)	219	9.9999e-06	0.0073	9.9999e-06	0.0073	0.67097	1	0.36065	1	0.14703	1	9.9999e-06	0.0073	1	1	9.9999e-06	0.0073	0.10817	1	9.9999e-06	0.0073
del_9q21.11	103 (20%)	408	9.9999e-06	0.0073	9.9999e-06	0.0073	0.98258	1	0.23666	1	0.85448	1	0.02604	1	0.73159	1	0.00053999	0.286	0.48011	1	0.00267	1
del_9q34.3	76 (15%)	435	9.9999e-06	0.0073	0.00109	0.557	0.61168	1	0.36849	1	0.43953	1	0.0476	1	0.72921	1	0.02169	1	0.20177	1	0.01976	1
del_10p15.3	165 (32%)	346	9.9999e-06	0.0073	9.9999e-06	0.0073	0.60788	1	0.57475	1	0.12673	1	0.15334	1	0.14401	1	0.02719	1	0.098639	1	0.00102	0.526
del_10p11.21	152 (30%)	359	9.9999e-06	0.0073	9.9999e-06	0.0073	0.448	1	0.17298	1	0.27662	1	0.74638	1	0.01659	1	0.04574	1	0.13336	1	0.00118	0.601
del_10q23.31	134 (26%)	377	2e-05	0.0118	9.9999e-06	0.0073	0.13322	1	0.97837	1	8.9999e-05	0.05	9.9999e-06	0.0073	0.0073399	1	0.33683	1	0.04607	1	0.055769	1
del_11p15.5	156 (31%)	355	9.9999e-06	0.0073	9.9999e-06	0.0073	0.86585	1	0.281	1	7.9999e-05	0.0447	0.00267	1	9.9999e-06	0.0073	0.01789	1	0.15917	1	3e-05	0.0172
del_11q23.1	239 (47%)	272	9.9999e-06	0.0073	9.9999e-06	0.0073	0.087679	1	0.16536	1	9.9999e-06	0.0073	9.9999e-06	0.0073	0.00206	1	0.03289	1	0.02275	1	0.0090599	1
del_12q24.33	60 (12%)	451	2e-05	0.0118	2e-05	0.0118	0.61635	1	0.45666	1	0.86661	1	0.56243	1	0.48942	1	0.39873	1	0.062609	1	0.43318	1
del_13q12.11	224 (44%)	287	9.9999e-06	0.0073	9.9999e-06	0.0073	0.14811	1	0.31464	1	0.02459	1	4e-05	0.0228	0.83243	1	0.01837	1	0.58874	1	0.00126	0.636
del_13q14.2	209 (41%)	302	9.9999e-06	0.0073	9.9999e-06	0.0073	0.11125	1	0.56551	1	9.9999e-06	0.0073	9.9999e-06	0.0073	0.0037	1	0.42164	1	0.19904	1	0.00078999	0.413
del_14q11.2	72 (14%)	439	0.00342	1	0.01157	1	0.32394	1	0.89834	1	0.11726	1	0.27665	1	0.03474	1	0.02161	1	0.16116	1	0.0092899	1
del_14q32.32	73 (14%)	438	0.00019	0.104	9.9999e-06	0.0073	0.01768	1	0.46732	1	2e-05	0.0118	9.9999e-06	0.0073	0.003	1	0.01752	1	0.01927	1	0.00364	1
del_15q15.1	119 (23%)	392	9.9999e-06	0.0073	0.20231	1	0.67055	1	0.41081	1	0.071169	1	0.082269	1	0.80103	1	0.5108	1	0.68964	1	0.16972	1
del_16q23.3	102 (20%)	409	0.00124	0.629	9.9999e-06	0.0073	0.16047	1	0.23167	1	9.9999e-06	0.0073	9.9999e-06	0.0073	0.00432	1	0.14329	1	0.0062299	1	0.051789	1
del_17q25.3	68 (13%)	443	0.03803	1	9.9999e-06	0.0073	0.4343	1	0.69365	1	0.01267	1	0.00339	1	0.00367	1	0.03044	1	0.00489	1	0.10259	1
del_18q21.2	259 (51%)	252	9.9999e-06	0.0073	9.9999e-06	0.0073	0.89889	1	0.37885	1	0.0069499	1	9.9999e-06	0.0073	0.01811	1	9.9999e-06	0.0073	0.19326	1	9.9999e-06	0.0073
del_18q23	278 (54%)	233	9.9999e-06	0.0073	9.9999e-06	0.0073	0.25596	1	0.24504	1	0.0056499	1	9.9999e-06	0.0073	0.02372	1	9.9999e-06	0.0073	0.075029	1	9.9999e-06	0.0073
del_19p13.3	165 (32%)	346	9.9999e-06	0.0073	9.9999e-06	0.0073	0.44849	1	0.46158	1	0.01893	1	0.01611	1	0.22338	1	5.9999e-05	0.0338	0.53816	1	0.00087999	0.458
del_19q13.43	94 (18%)	417	9.9999e-06	0.0073	9.9999e-06	0.0073	0.33127	1	0.58946	1	0.88242	1	0.3443	1	0.62401	1	0.01207	1	0.60931	1	0.059189	1
del_21q22.3	195 (38%)	316	9.9999e-06	0.0073	9.9999e-06	0.0073	0.61217	1	0.93522	1	0.04491	1	0.065299	1	0.60871	1	3e-05	0.0172	0.91422	1	0.00021	0.114
del_22q13.31	84 (16%)	427	0.00113	0.576	0.02768	1	0.68797	1	0.89213	1	0.02004	1	0.52433	1	0.011	1	0.21029	1	0.12604	1	0.00188	0.94
del_xp22.2	152 (30%)	359	9.9999e-06	0.0073	9.9999e-06	0.0073	0.31804	1	0.00223	1	0.085939	1	0.0057299	1	0.01707	1	0.098809	1	0.39172	1	0.01347	1
del_xp21.3	154 (30%)	357	9.9999e-06	0.0073	9.9999e-06	0.0073	0.55978	1	0.054899	1	0.46834	1	0.01346	1	0.20793	1	0.077209	1	0.74212	1	0.0088399	1
del_xq21.33	74 (14%)	437	2e-05	0.0118	9.9999e-06	0.0073	0.49072	1	0.17144	1	0.00086999	0.453	0.01432	1	0.00011	0.0607	0.071239	1	0.21681	1	0.00063999	0.336
