[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTKIRC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/10668118/KIRC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/10013764/transformed.cor.cli.txt"

nPatients in clinical file=537, in cluster file=527, common to both=527
[1]  29 527
[1] "AMP PEAK  1(1Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE 
                           62                           465 
  AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE 
                           62                           465 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           62                           465 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           62                           465 
[1] "AMP PEAK  3(3Q26.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                            87                            440 
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                            87                            440 
[1] "AMP PEAK  4(4Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                           16                           511 
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                           16                           511 
[1] "AMP PEAK  5(5Q35.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE 
                          332                           195 
  AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE 
                          332                           195 
[1] "AMP PEAK  6(7Q36.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE 
                          176                           351 
  AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE 
                          176                           351 
[1] "AMP PEAK  7(8Q24.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE 
                            79                            448 
  AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE 
                            79                            448 
[1] "AMP PEAK  8(10P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE 
                          20                          507 
  AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE 
                          20                          507 
[1] "AMP PEAK  9(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE 
                           31                           496 
  AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE 
                           31                           496 
[1] "AMP PEAK 10(XP11.4) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE 
                           33                           494 
  AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE 
                           33                           494 
[1] "AMP PEAK 11(XQ11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE 
                           29                           498 
  AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE 
                           29                           498 
[1] "AMP PEAK 12(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE 
                         37                         490 
  AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE 
                         37                         490 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                           103                            424 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                           103                            424 
[1] "DEL PEAK  2(1P31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           77                           450 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           77                           450 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         42                         485 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         42                         485 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           477 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           50                           477 
[1] "DEL PEAK  5(3P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE 
                          462                            65 
  DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE 
                          462                            65 
[1] "DEL PEAK  6(3P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE 
                          334                           193 
  DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE 
                          334                           193 
[1] "DEL PEAK  7(3P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE 
                          246                           281 
  DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE 
                          246                           281 
[1] "DEL PEAK  8(3Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE 
                          161                           366 
  DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE 
                          161                           366 
[1] "DEL PEAK  9(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                           78                           449 
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                           78                           449 
[1] "DEL PEAK 10(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                        151                         376 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                        151                         376 
[1] "DEL PEAK 11(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        151                         376 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        151                         376 
[1] "DEL PEAK 12(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                          154                           373 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                          154                           373 
[1] "DEL PEAK 13(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                        152                         375 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                        152                         375 
[1] "DEL PEAK 14(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                          159                           368 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                          159                           368 
[1] "DEL PEAK 15(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             96                             431 
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             96                             431 
[1] "DEL PEAK 16(13Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE 
                            81                            446 
  DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE 
                            81                            446 
[1] "DEL PEAK 17(14Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE 
                           228                            299 
  DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE 
                           228                            299 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 527 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 527 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        3      6      1
  AMP PEAK  1(1Q24.1) WILD-TYPE     30     18     12
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           6                            18
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED        1      3      0      3      1      1
  AMP PEAK  1(1Q24.1) WILD-TYPE     10      9      4      8     12      8
                               vv
clus                            CLUS_7
  AMP PEAK  1(1Q24.1) MUTATED        1
  AMP PEAK  1(1Q24.1) WILD-TYPE      9
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           3                             8
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        9      5     48
  AMP PEAK  1(1Q24.1) WILD-TYPE    203    147    115
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           9                           203
  CLUS_2                           5                           147
  CLUS_3                          48                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        8     11     11
  AMP PEAK  1(1Q24.1) WILD-TYPE    120     64     99
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           8                           120
  CLUS_2                          11                            64
  CLUS_3                          11                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED       11     11     10      5      5     12
  AMP PEAK  1(1Q24.1) WILD-TYPE     89     77     74     70     38     45
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          11                            89
  CLUS_2                          11                            77
  CLUS_3                          10                            74
  CLUS_4                           5                            70
  CLUS_5                           5                            38
  CLUS_6                          12                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED       13     19     22
  AMP PEAK  1(1Q24.1) WILD-TYPE     82    179    132
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          13                            82
  CLUS_2                          19                           179
  CLUS_3                          22                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED       19      4     37
  AMP PEAK  1(1Q24.1) WILD-TYPE    196    104    150
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          19                           196
  CLUS_2                           4                           104
  CLUS_3                          37                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1Q24.1) MUTATED        8     18     24      3      7      0
  AMP PEAK  1(1Q24.1) WILD-TYPE    112    158    102     25     25     28
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           8                           112
  CLUS_2                          18                           158
  CLUS_3                          24                           102
  CLUS_4                           3                            25
  CLUS_5                           7                            25
  CLUS_6                           0                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        4     21     35
  AMP PEAK  1(1Q24.1) WILD-TYPE    118    185    137
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           4                           118
  CLUS_2                          21                           185
  CLUS_3                          35                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED       21     23     16
  AMP PEAK  1(1Q24.1) WILD-TYPE    138    215     87
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          21                           138
  CLUS_2                          23                           215
  CLUS_3                          16                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED        2      6     18
  AMP PEAK  1(1Q24.1) WILD-TYPE     55     88     71
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           2                            55
  CLUS_2                           6                            88
  CLUS_3                          18                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q24.1) MUTATED       12      7      7
  AMP PEAK  1(1Q24.1) WILD-TYPE     81     93     40
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          12                            81
  CLUS_2                           7                            93
  CLUS_3                           7                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        3      5      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     30     19     12
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           5                            19
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        1      3      0      2      1      1
  AMP PEAK  2(1Q32.1) WILD-TYPE     10      9      4      9     12      8
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q32.1) MUTATED        1
  AMP PEAK  2(1Q32.1) WILD-TYPE      9
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           2                             9
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        7      4     51
  AMP PEAK  2(1Q32.1) WILD-TYPE    205    148    112
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           7                           205
  CLUS_2                           4                           148
  CLUS_3                          51                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        6     11     12
  AMP PEAK  2(1Q32.1) WILD-TYPE    122     64     98
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           6                           122
  CLUS_2                          11                            64
  CLUS_3                          12                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED       12     10     12      4      5     12
  AMP PEAK  2(1Q32.1) WILD-TYPE     88     78     72     71     38     45
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          12                            88
  CLUS_2                          10                            78
  CLUS_3                          12                            72
  CLUS_4                           4                            71
  CLUS_5                           5                            38
  CLUS_6                          12                            45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       15     18     22
  AMP PEAK  2(1Q32.1) WILD-TYPE     80    180    132
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          15                            80
  CLUS_2                          18                           180
  CLUS_3                          22                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       19      3     38
  AMP PEAK  2(1Q32.1) WILD-TYPE    196    105    149
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          19                           196
  CLUS_2                           3                           105
  CLUS_3                          38                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        9     18     24      2      7      0
  AMP PEAK  2(1Q32.1) WILD-TYPE    111    158    102     26     25     28
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           9                           111
  CLUS_2                          18                           158
  CLUS_3                          24                           102
  CLUS_4                           2                            26
  CLUS_5                           7                            25
  CLUS_6                           0                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        4     20     36
  AMP PEAK  2(1Q32.1) WILD-TYPE    118    186    136
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                           118
  CLUS_2                          20                           186
  CLUS_3                          36                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       23     23     14
  AMP PEAK  2(1Q32.1) WILD-TYPE    136    215     89
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          23                           136
  CLUS_2                          23                           215
  CLUS_3                          14                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        2      6     20
  AMP PEAK  2(1Q32.1) WILD-TYPE     55     88     69
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           2                            55
  CLUS_2                           6                            88
  CLUS_3                          20                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       13      8      7
  AMP PEAK  2(1Q32.1) WILD-TYPE     80     92     40
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          13                            80
  CLUS_2                           8                            92
  CLUS_3                           7                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        2      7      2
  AMP PEAK  3(3Q26.32) WILD-TYPE     31     17     11
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            7                             17
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED        0      2      0      5      1      1
  AMP PEAK  3(3Q26.32) WILD-TYPE     11     10      4      6     12      8
                                vv
clus                             CLUS_7
  AMP PEAK  3(3Q26.32) MUTATED        2
  AMP PEAK  3(3Q26.32) WILD-TYPE      8
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            2                             10
  CLUS_3                            0                              4
  CLUS_4                            5                              6
  CLUS_5                            1                             12
  CLUS_6                            1                              8
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        9     24     54
  AMP PEAK  3(3Q26.32) WILD-TYPE    203    128    109
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            9                            203
  CLUS_2                           24                            128
  CLUS_3                           54                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        7     14     30
  AMP PEAK  3(3Q26.32) WILD-TYPE    121     61     80
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            7                            121
  CLUS_2                           14                             61
  CLUS_3                           30                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED       12     12     16     18      2     18
  AMP PEAK  3(3Q26.32) WILD-TYPE     88     76     68     57     41     39
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           12                             88
  CLUS_2                           12                             76
  CLUS_3                           16                             68
  CLUS_4                           18                             57
  CLUS_5                            2                             41
  CLUS_6                           18                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       12     20     46
  AMP PEAK  3(3Q26.32) WILD-TYPE     83    178    108
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           12                             83
  CLUS_2                           20                            178
  CLUS_3                           46                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       19     14     54
  AMP PEAK  3(3Q26.32) WILD-TYPE    196     94    133
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           19                            196
  CLUS_2                           14                             94
  CLUS_3                           54                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3Q26.32) MUTATED       14     15     42      3      8      5
  AMP PEAK  3(3Q26.32) WILD-TYPE    106    161     84     25     24     23
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           14                            106
  CLUS_2                           15                            161
  CLUS_3                           42                             84
  CLUS_4                            3                             25
  CLUS_5                            8                             24
  CLUS_6                            5                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       13     16     55
  AMP PEAK  3(3Q26.32) WILD-TYPE    109    190    117
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           13                            109
  CLUS_2                           16                            190
  CLUS_3                           55                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       35     23     26
  AMP PEAK  3(3Q26.32) WILD-TYPE    124    215     77
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           35                            124
  CLUS_2                           23                            215
  CLUS_3                           26                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED        5     11     26
  AMP PEAK  3(3Q26.32) WILD-TYPE     52     83     63
D3V11, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            5                             52
  CLUS_2                           11                             83
  CLUS_3                           26                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.32) MUTATED       23     11      8
  AMP PEAK  3(3Q26.32) WILD-TYPE     70     89     39
D3V12, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           23                             70
  CLUS_2                           11                             89
  CLUS_3                            8                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        0      2      1
  AMP PEAK  4(4Q32.1) WILD-TYPE     33     22     12
D4V1, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                           2                            22
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        0      1      0      1      0      0
  AMP PEAK  4(4Q32.1) WILD-TYPE     11     11      4     10     13      9
                               vv
clus                            CLUS_7
  AMP PEAK  4(4Q32.1) MUTATED        1
  AMP PEAK  4(4Q32.1) WILD-TYPE      9
D4V2, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           1                            11
  CLUS_3                           0                             4
  CLUS_4                           1                            10
  CLUS_5                           0                            13
  CLUS_6                           0                             9
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        4      6      6
  AMP PEAK  4(4Q32.1) WILD-TYPE    208    146    157
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                           208
  CLUS_2                           6                           146
  CLUS_3                           6                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        4      1      2
  AMP PEAK  4(4Q32.1) WILD-TYPE    124     74    108
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                           124
  CLUS_2                           1                            74
  CLUS_3                           2                           108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        1      3      3      3      0      1
  AMP PEAK  4(4Q32.1) WILD-TYPE     99     85     81     72     43     56
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           1                            99
  CLUS_2                           3                            85
  CLUS_3                           3                            81
  CLUS_4                           3                            72
  CLUS_5                           0                            43
  CLUS_6                           1                            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        1      3      7
  AMP PEAK  4(4Q32.1) WILD-TYPE     94    195    147
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           1                            94
  CLUS_2                           3                           195
  CLUS_3                           7                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        2      7      6
  AMP PEAK  4(4Q32.1) WILD-TYPE    213    101    181
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           2                           213
  CLUS_2                           7                           101
  CLUS_3                           6                           181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(4Q32.1) MUTATED        4      2      5      0      0      4
  AMP PEAK  4(4Q32.1) WILD-TYPE    116    174    121     28     32     24
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                           116
  CLUS_2                           2                           174
  CLUS_3                           5                           121
  CLUS_4                           0                            28
  CLUS_5                           0                            32
  CLUS_6                           4                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        3      1     12
  AMP PEAK  4(4Q32.1) WILD-TYPE    119    205    160
D4V9, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           3                           119
  CLUS_2                           1                           205
  CLUS_3                          12                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        5      6      5
  AMP PEAK  4(4Q32.1) WILD-TYPE    154    232     98
D4V10, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           5                           154
  CLUS_2                           6                           232
  CLUS_3                           5                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        0      1      4
  AMP PEAK  4(4Q32.1) WILD-TYPE     57     93     85
D4V11, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           0                            57
  CLUS_2                           1                            93
  CLUS_3                           4                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q32.1) MUTATED        4      1      0
  AMP PEAK  4(4Q32.1) WILD-TYPE     89     99     47
D4V12, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                            89
  CLUS_2                           1                            99
  CLUS_3                           0                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       20     14      3
  AMP PEAK  5(5Q35.1) WILD-TYPE     13     10     10
D5V1, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          20                            13
  CLUS_2                          14                            10
  CLUS_3                           3                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED        8      5      0      9      7      5
  AMP PEAK  5(5Q35.1) WILD-TYPE      3      7      4      2      6      4
                               vv
clus                            CLUS_7
  AMP PEAK  5(5Q35.1) MUTATED        3
  AMP PEAK  5(5Q35.1) WILD-TYPE      7
D5V2, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                           8                             3
  CLUS_2                           5                             7
  CLUS_3                           0                             4
  CLUS_4                           9                             2
  CLUS_5                           7                             6
  CLUS_6                           5                             4
  CLUS_7                           3                             7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED      145     74    113
  AMP PEAK  5(5Q35.1) WILD-TYPE     67     78     50
D5V3, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                         145                            67
  CLUS_2                          74                            78
  CLUS_3                         113                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       82     42     72
  AMP PEAK  5(5Q35.1) WILD-TYPE     46     33     38
D5V4, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          82                            46
  CLUS_2                          42                            33
  CLUS_3                          72                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED       65     47     67     45     30     34
  AMP PEAK  5(5Q35.1) WILD-TYPE     35     41     17     30     13     23
D5V5, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          65                            35
  CLUS_2                          47                            41
  CLUS_3                          67                            17
  CLUS_4                          45                            30
  CLUS_5                          30                            13
  CLUS_6                          34                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       70    134     84
  AMP PEAK  5(5Q35.1) WILD-TYPE     25     64     70
D5V6, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          70                            25
  CLUS_2                         134                            64
  CLUS_3                          84                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED      147     53    126
  AMP PEAK  5(5Q35.1) WILD-TYPE     68     55     61
D5V7, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                         147                            68
  CLUS_2                          53                            55
  CLUS_3                         126                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(5Q35.1) MUTATED       83    118     79     14     25      7
  AMP PEAK  5(5Q35.1) WILD-TYPE     37     58     47     14      7     21
D5V8, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          83                            37
  CLUS_2                         118                            58
  CLUS_3                          79                            47
  CLUS_4                          14                            14
  CLUS_5                          25                             7
  CLUS_6                           7                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       73    142    107
  AMP PEAK  5(5Q35.1) WILD-TYPE     49     64     65
D5V9, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          73                            49
  CLUS_2                         142                            64
  CLUS_3                         107                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       99    164     59
  AMP PEAK  5(5Q35.1) WILD-TYPE     60     74     44
D5V10, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          99                            60
  CLUS_2                         164                            74
  CLUS_3                          59                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       36     65     61
  AMP PEAK  5(5Q35.1) WILD-TYPE     21     29     28
D5V11, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          36                            21
  CLUS_2                          65                            29
  CLUS_3                          61                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q35.1) MUTATED       53     74     35
  AMP PEAK  5(5Q35.1) WILD-TYPE     40     26     12
D5V12, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          53                            40
  CLUS_2                          74                            26
  CLUS_3                          35                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED        9      9      6
  AMP PEAK  6(7Q36.3) WILD-TYPE     24     15      7
D6V1, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                           9                            24
  CLUS_2                           9                            15
  CLUS_3                           6                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q36.3) MUTATED        2      4      2      5      4      3
  AMP PEAK  6(7Q36.3) WILD-TYPE      9      8      2      6      9      6
                               vv
clus                            CLUS_7
  AMP PEAK  6(7Q36.3) MUTATED        4
  AMP PEAK  6(7Q36.3) WILD-TYPE      6
D6V2, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           4                             8
  CLUS_3                           2                             2
  CLUS_4                           5                             6
  CLUS_5                           4                             9
  CLUS_6                           3                             6
  CLUS_7                           4                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       30     57     89
  AMP PEAK  6(7Q36.3) WILD-TYPE    182     95     74
D6V3, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          30                           182
  CLUS_2                          57                            95
  CLUS_3                          89                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       32     16     45
  AMP PEAK  6(7Q36.3) WILD-TYPE     96     59     65
D6V4, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          32                            96
  CLUS_2                          16                            59
  CLUS_3                          45                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q36.3) MUTATED       22     23     34     33     10     30
  AMP PEAK  6(7Q36.3) WILD-TYPE     78     65     50     42     33     27
D6V5, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          22                            78
  CLUS_2                          23                            65
  CLUS_3                          34                            50
  CLUS_4                          33                            42
  CLUS_5                          10                            33
  CLUS_6                          30                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       32     54     66
  AMP PEAK  6(7Q36.3) WILD-TYPE     63    144     88
D6V6, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          32                            63
  CLUS_2                          54                           144
  CLUS_3                          66                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       52     34     85
  AMP PEAK  6(7Q36.3) WILD-TYPE    163     74    102
D6V7, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          52                           163
  CLUS_2                          34                            74
  CLUS_3                          85                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7Q36.3) MUTATED       43     42     58     10     11      7
  AMP PEAK  6(7Q36.3) WILD-TYPE     77    134     68     18     21     21
D6V8, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          43                            77
  CLUS_2                          42                           134
  CLUS_3                          58                            68
  CLUS_4                          10                            18
  CLUS_5                          11                            21
  CLUS_6                           7                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       36     58     76
  AMP PEAK  6(7Q36.3) WILD-TYPE     86    148     96
D6V9, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          36                            86
  CLUS_2                          58                           148
  CLUS_3                          76                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       61     67     42
  AMP PEAK  6(7Q36.3) WILD-TYPE     98    171     61
D6V10, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          61                            98
  CLUS_2                          67                           171
  CLUS_3                          42                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       19     25     40
  AMP PEAK  6(7Q36.3) WILD-TYPE     38     69     49
D6V11, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          19                            38
  CLUS_2                          25                            69
  CLUS_3                          40                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7Q36.3) MUTATED       39     26     19
  AMP PEAK  6(7Q36.3) WILD-TYPE     54     74     28
D6V12, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          39                            54
  CLUS_2                          26                            74
  CLUS_3                          19                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8Q24.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        1      3      2
  AMP PEAK  7(8Q24.22) WILD-TYPE     32     21     11
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            3                             21
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED        0      3      1      0      0      1
  AMP PEAK  7(8Q24.22) WILD-TYPE     11      9      3     11     13      8
                                vv
clus                             CLUS_7
  AMP PEAK  7(8Q24.22) MUTATED        1
  AMP PEAK  7(8Q24.22) WILD-TYPE      9
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            3                              9
  CLUS_3                            1                              3
  CLUS_4                            0                             11
  CLUS_5                            0                             13
  CLUS_6                            1                              8
  CLUS_7                            1                              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        5     15     59
  AMP PEAK  7(8Q24.22) WILD-TYPE    207    137    104
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            5                            207
  CLUS_2                           15                            137
  CLUS_3                           59                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        6     14     33
  AMP PEAK  7(8Q24.22) WILD-TYPE    122     61     77
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            6                            122
  CLUS_2                           14                             61
  CLUS_3                           33                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED        6     14     16     12      1     22
  AMP PEAK  7(8Q24.22) WILD-TYPE     94     74     68     63     42     35
D7V5, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            6                             94
  CLUS_2                           14                             74
  CLUS_3                           16                             68
  CLUS_4                           12                             63
  CLUS_5                            1                             42
  CLUS_6                           22                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED       11     21     39
  AMP PEAK  7(8Q24.22) WILD-TYPE     84    177    115
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           11                             84
  CLUS_2                           21                            177
  CLUS_3                           39                            115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        9     10     59
  AMP PEAK  7(8Q24.22) WILD-TYPE    206     98    128
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            9                            206
  CLUS_2                           10                             98
  CLUS_3                           59                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(8Q24.22) MUTATED       10      9     53      2      3      1
  AMP PEAK  7(8Q24.22) WILD-TYPE    110    167     73     26     29     27
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           10                            110
  CLUS_2                            9                            167
  CLUS_3                           53                             73
  CLUS_4                            2                             26
  CLUS_5                            3                             29
  CLUS_6                            1                             27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED       13     13     51
  AMP PEAK  7(8Q24.22) WILD-TYPE    109    193    121
D7V9, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           13                            109
  CLUS_2                           13                            193
  CLUS_3                           51                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED       40     17     20
  AMP PEAK  7(8Q24.22) WILD-TYPE    119    221     83
D7V10, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           40                            119
  CLUS_2                           17                            221
  CLUS_3                           20                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED        4      4     27
  AMP PEAK  7(8Q24.22) WILD-TYPE     53     90     62
D7V11, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            4                             53
  CLUS_2                            4                             90
  CLUS_3                           27                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8Q24.22) MUTATED       23      4      8
  AMP PEAK  7(8Q24.22) WILD-TYPE     70     96     39
D7V12, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           23                             70
  CLUS_2                            4                             96
  CLUS_3                            8                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(10P14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        0      2      1
  AMP PEAK  8(10P14) WILD-TYPE     33     22     12
D8V1, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          0                           33
  CLUS_2                          2                           22
  CLUS_3                          1                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  8(10P14) MUTATED        0      1      0      1      0      0      1
  AMP PEAK  8(10P14) WILD-TYPE     11     11      4     10     13      9      9
D8V2, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          0                           11
  CLUS_2                          1                           11
  CLUS_3                          0                            4
  CLUS_4                          1                           10
  CLUS_5                          0                           13
  CLUS_6                          0                            9
  CLUS_7                          1                            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        0      6     14
  AMP PEAK  8(10P14) WILD-TYPE    212    146    149
D8V3, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          0                          212
  CLUS_2                          6                          146
  CLUS_3                         14                          149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        2      4      6
  AMP PEAK  8(10P14) WILD-TYPE    126     71    104
D8V4, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          126
  CLUS_2                          4                           71
  CLUS_3                          6                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10P14) MUTATED        3      3      5      2      2      4
  AMP PEAK  8(10P14) WILD-TYPE     97     85     79     73     41     53
D8V5, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          3                           97
  CLUS_2                          3                           85
  CLUS_3                          5                           79
  CLUS_4                          2                           73
  CLUS_5                          2                           41
  CLUS_6                          4                           53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        2      8      9
  AMP PEAK  8(10P14) WILD-TYPE     93    190    145
D8V6, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                           93
  CLUS_2                          8                          190
  CLUS_3                          9                          145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        2      4     14
  AMP PEAK  8(10P14) WILD-TYPE    213    104    173
D8V7, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          213
  CLUS_2                          4                          104
  CLUS_3                         14                          173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(10P14) MUTATED        3      0     13      1      2      1
  AMP PEAK  8(10P14) WILD-TYPE    117    176    113     27     30     27
D8V8, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          3                          117
  CLUS_2                          0                          176
  CLUS_3                         13                          113
  CLUS_4                          1                           27
  CLUS_5                          2                           30
  CLUS_6                          1                           27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        5      4     11
  AMP PEAK  8(10P14) WILD-TYPE    117    202    161
D8V9, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          5                          117
  CLUS_2                          4                          202
  CLUS_3                         11                          161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED       10      4      6
  AMP PEAK  8(10P14) WILD-TYPE    149    234     97
D8V10, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                         10                          149
  CLUS_2                          4                          234
  CLUS_3                          6                           97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        3      3      3
  AMP PEAK  8(10P14) WILD-TYPE     54     91     86
D8V11, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          3                           54
  CLUS_2                          3                           91
  CLUS_3                          3                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(10P14) MUTATED        5      0      4
  AMP PEAK  8(10P14) WILD-TYPE     88    100     43
D8V12, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          5                           88
  CLUS_2                          0                          100
  CLUS_3                          4                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        2      2      1
  AMP PEAK  9(XP22.2) WILD-TYPE     31     22     12
D9V1, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           2                            22
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XP22.2) MUTATED        0      2      0      0      2      0
  AMP PEAK  9(XP22.2) WILD-TYPE     11     10      4     11     11      9
                               vv
clus                            CLUS_7
  AMP PEAK  9(XP22.2) MUTATED        1
  AMP PEAK  9(XP22.2) WILD-TYPE      9
D9V2, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           2                            10
  CLUS_3                           0                             4
  CLUS_4                           0                            11
  CLUS_5                           2                            11
  CLUS_6                           0                             9
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        4      9     18
  AMP PEAK  9(XP22.2) WILD-TYPE    208    143    145
D9V3, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           4                           208
  CLUS_2                           9                           143
  CLUS_3                          18                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        2      3      6
  AMP PEAK  9(XP22.2) WILD-TYPE    126     72    104
D9V4, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           2                           126
  CLUS_2                           3                            72
  CLUS_3                           6                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XP22.2) MUTATED        0      3      7     10      1      4
  AMP PEAK  9(XP22.2) WILD-TYPE    100     85     77     65     42     53
D9V5, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           0                           100
  CLUS_2                           3                            85
  CLUS_3                           7                            77
  CLUS_4                          10                            65
  CLUS_5                           1                            42
  CLUS_6                           4                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        3      7     15
  AMP PEAK  9(XP22.2) WILD-TYPE     92    191    139
D9V6, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           3                            92
  CLUS_2                           7                           191
  CLUS_3                          15                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        7      8     16
  AMP PEAK  9(XP22.2) WILD-TYPE    208    100    171
D9V7, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           7                           208
  CLUS_2                           8                           100
  CLUS_3                          16                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(XP22.2) MUTATED        3      6     16      3      2      1
  AMP PEAK  9(XP22.2) WILD-TYPE    117    170    110     25     30     27
D9V8, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           3                           117
  CLUS_2                           6                           170
  CLUS_3                          16                           110
  CLUS_4                           3                            25
  CLUS_5                           2                            30
  CLUS_6                           1                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        6      8     17
  AMP PEAK  9(XP22.2) WILD-TYPE    116    198    155
D9V9, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           6                           116
  CLUS_2                           8                           198
  CLUS_3                          17                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED       14     11      6
  AMP PEAK  9(XP22.2) WILD-TYPE    145    227     97
D9V10, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                          14                           145
  CLUS_2                          11                           227
  CLUS_3                           6                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        2      2      8
  AMP PEAK  9(XP22.2) WILD-TYPE     55     92     81
D9V11, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           2                            55
  CLUS_2                           2                            92
  CLUS_3                           8                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(XP22.2) MUTATED        7      2      3
  AMP PEAK  9(XP22.2) WILD-TYPE     86     98     44
D9V12, multiclass
        clus
vv       AMP PEAK  9(XP22.2) MUTATED AMP PEAK  9(XP22.2) WILD-TYPE
  CLUS_1                           7                            86
  CLUS_2                           2                            98
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(XP11.4) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        3      1      1
  AMP PEAK 10(XP11.4) WILD-TYPE     30     23     12
D10V1, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           1                            23
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XP11.4) MUTATED        0      1      0      0      2      1
  AMP PEAK 10(XP11.4) WILD-TYPE     11     11      4     11     11      8
                               vv
clus                            CLUS_7
  AMP PEAK 10(XP11.4) MUTATED        1
  AMP PEAK 10(XP11.4) WILD-TYPE      9
D10V2, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           1                            11
  CLUS_3                           0                             4
  CLUS_4                           0                            11
  CLUS_5                           2                            11
  CLUS_6                           1                             8
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        4      9     20
  AMP PEAK 10(XP11.4) WILD-TYPE    208    143    143
D10V3, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           4                           208
  CLUS_2                           9                           143
  CLUS_3                          20                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        3      4      9
  AMP PEAK 10(XP11.4) WILD-TYPE    125     71    101
D10V4, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           3                           125
  CLUS_2                           4                            71
  CLUS_3                           9                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XP11.4) MUTATED        0      5      5     10      0      5
  AMP PEAK 10(XP11.4) WILD-TYPE    100     83     79     65     43     52
D10V5, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           0                           100
  CLUS_2                           5                            83
  CLUS_3                           5                            79
  CLUS_4                          10                            65
  CLUS_5                           0                            43
  CLUS_6                           5                            52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        1      8     16
  AMP PEAK 10(XP11.4) WILD-TYPE     94    190    138
D10V6, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           1                            94
  CLUS_2                           8                           190
  CLUS_3                          16                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        7      9     17
  AMP PEAK 10(XP11.4) WILD-TYPE    208     99    170
D10V7, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           7                           208
  CLUS_2                           9                            99
  CLUS_3                          17                           170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(XP11.4) MUTATED        2      7     19      3      1      1
  AMP PEAK 10(XP11.4) WILD-TYPE    118    169    107     25     31     27
D10V8, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           2                           118
  CLUS_2                           7                           169
  CLUS_3                          19                           107
  CLUS_4                           3                            25
  CLUS_5                           1                            31
  CLUS_6                           1                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        6      8     18
  AMP PEAK 10(XP11.4) WILD-TYPE    116    198    154
D10V9, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           6                           116
  CLUS_2                           8                           198
  CLUS_3                          18                           154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED       14     13      5
  AMP PEAK 10(XP11.4) WILD-TYPE    145    225     98
D10V10, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                          14                           145
  CLUS_2                          13                           225
  CLUS_3                           5                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        2      2      9
  AMP PEAK 10(XP11.4) WILD-TYPE     55     92     80
D10V11, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           2                            55
  CLUS_2                           2                            92
  CLUS_3                           9                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(XP11.4) MUTATED        8      2      3
  AMP PEAK 10(XP11.4) WILD-TYPE     85     98     44
D10V12, multiclass
        clus
vv       AMP PEAK 10(XP11.4) MUTATED AMP PEAK 10(XP11.4) WILD-TYPE
  CLUS_1                           8                            85
  CLUS_2                           2                            98
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(XQ11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        2      0      2
  AMP PEAK 11(XQ11.2) WILD-TYPE     31     24     11
D11V1, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           0                            24
  CLUS_3                           2                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(XQ11.2) MUTATED        0      0      1      0      2      0
  AMP PEAK 11(XQ11.2) WILD-TYPE     11     12      3     11     11      9
                               vv
clus                            CLUS_7
  AMP PEAK 11(XQ11.2) MUTATED        1
  AMP PEAK 11(XQ11.2) WILD-TYPE      9
D11V2, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           0                            12
  CLUS_3                           1                             3
  CLUS_4                           0                            11
  CLUS_5                           2                            11
  CLUS_6                           0                             9
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        5     10     14
  AMP PEAK 11(XQ11.2) WILD-TYPE    207    142    149
D11V3, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           5                           207
  CLUS_2                          10                           142
  CLUS_3                          14                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        2      4      5
  AMP PEAK 11(XQ11.2) WILD-TYPE    126     71    105
D11V4, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                           126
  CLUS_2                           4                            71
  CLUS_3                           5                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(XQ11.2) MUTATED        2      4      5      8      0      4
  AMP PEAK 11(XQ11.2) WILD-TYPE     98     84     79     67     43     53
D11V5, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                            98
  CLUS_2                           4                            84
  CLUS_3                           5                            79
  CLUS_4                           8                            67
  CLUS_5                           0                            43
  CLUS_6                           4                            53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        2      8     13
  AMP PEAK 11(XQ11.2) WILD-TYPE     93    190    141
D11V6, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           2                            93
  CLUS_2                           8                           190
  CLUS_3                          13                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        8      9     12
  AMP PEAK 11(XQ11.2) WILD-TYPE    207     99    175
D11V7, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           8                           207
  CLUS_2                           9                            99
  CLUS_3                          12                           175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(XQ11.2) MUTATED        4      8     12      2      1      2
  AMP PEAK 11(XQ11.2) WILD-TYPE    116    168    114     26     31     26
D11V8, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           4                           116
  CLUS_2                           8                           168
  CLUS_3                          12                           114
  CLUS_4                           2                            26
  CLUS_5                           1                            31
  CLUS_6                           2                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        5      8     15
  AMP PEAK 11(XQ11.2) WILD-TYPE    117    198    157
D11V9, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           5                           117
  CLUS_2                           8                           198
  CLUS_3                          15                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED       12     11      5
  AMP PEAK 11(XQ11.2) WILD-TYPE    147    227     98
D11V10, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                          12                           147
  CLUS_2                          11                           227
  CLUS_3                           5                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        1      3      7
  AMP PEAK 11(XQ11.2) WILD-TYPE     56     91     82
D11V11, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           1                            56
  CLUS_2                           3                            91
  CLUS_3                           7                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(XQ11.2) MUTATED        6      2      3
  AMP PEAK 11(XQ11.2) WILD-TYPE     87     98     44
D11V12, multiclass
        clus
vv       AMP PEAK 11(XQ11.2) MUTATED AMP PEAK 11(XQ11.2) WILD-TYPE
  CLUS_1                           6                            87
  CLUS_2                           2                            98
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        2      1      2
  AMP PEAK 12(XQ28) WILD-TYPE     31     23     11
D12V1, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         1                          23
  CLUS_3                         2                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 12(XQ28) MUTATED        1      0      0      1      1      0      2
  AMP PEAK 12(XQ28) WILD-TYPE     10     12      4     10     12      9      8
D12V2, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         1                          10
  CLUS_2                         0                          12
  CLUS_3                         0                           4
  CLUS_4                         1                          10
  CLUS_5                         1                          12
  CLUS_6                         0                           9
  CLUS_7                         2                           8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        9     11     17
  AMP PEAK 12(XQ28) WILD-TYPE    203    141    146
D12V3, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         9                         203
  CLUS_2                        11                         141
  CLUS_3                        17                         146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        7      6      9
  AMP PEAK 12(XQ28) WILD-TYPE    121     69    101
D12V4, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         7                         121
  CLUS_2                         6                          69
  CLUS_3                         9                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(XQ28) MUTATED        3      5      9      9      0      5
  AMP PEAK 12(XQ28) WILD-TYPE     97     83     75     66     43     52
D12V5, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         3                          97
  CLUS_2                         5                          83
  CLUS_3                         9                          75
  CLUS_4                         9                          66
  CLUS_5                         0                          43
  CLUS_6                         5                          52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        6     10     15
  AMP PEAK 12(XQ28) WILD-TYPE     89    188    139
D12V6, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         6                          89
  CLUS_2                        10                         188
  CLUS_3                        15                         139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        9      9     17
  AMP PEAK 12(XQ28) WILD-TYPE    206     99    170
D12V7, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         9                         206
  CLUS_2                         9                          99
  CLUS_3                        17                         170
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(XQ28) MUTATED        5      9     14      1      5      1
  AMP PEAK 12(XQ28) WILD-TYPE    115    167    112     27     27     27
D12V8, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         5                         115
  CLUS_2                         9                         167
  CLUS_3                        14                         112
  CLUS_4                         1                          27
  CLUS_5                         5                          27
  CLUS_6                         1                          27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        9      9     17
  AMP PEAK 12(XQ28) WILD-TYPE    113    197    155
D12V9, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         9                         113
  CLUS_2                         9                         197
  CLUS_3                        17                         155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED       15     15      5
  AMP PEAK 12(XQ28) WILD-TYPE    144    223     98
D12V10, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                        15                         144
  CLUS_2                        15                         223
  CLUS_3                         5                          98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        4      3     10
  AMP PEAK 12(XQ28) WILD-TYPE     53     91     79
D12V11, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         4                          53
  CLUS_2                         3                          91
  CLUS_3                        10                          79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(XQ28) MUTATED        9      5      3
  AMP PEAK 12(XQ28) WILD-TYPE     84     95     44
D12V12, multiclass
        clus
vv       AMP PEAK 12(XQ28) MUTATED AMP PEAK 12(XQ28) WILD-TYPE
  CLUS_1                         9                          84
  CLUS_2                         5                          95
  CLUS_3                         3                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        2      8      8
  DEL PEAK  1(1P36.23) WILD-TYPE     31     16      5
D13V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            8                             16
  CLUS_3                            8                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        0      2      2      5      1      1
  DEL PEAK  1(1P36.23) WILD-TYPE     11     10      2      6     12      8
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.23) MUTATED        7
  DEL PEAK  1(1P36.23) WILD-TYPE      3
D13V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            2                             10
  CLUS_3                            2                              2
  CLUS_4                            5                              6
  CLUS_5                            1                             12
  CLUS_6                            1                              8
  CLUS_7                            7                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       18     33     52
  DEL PEAK  1(1P36.23) WILD-TYPE    194    119    111
D13V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           18                            194
  CLUS_2                           33                            119
  CLUS_3                           52                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       17     17     26
  DEL PEAK  1(1P36.23) WILD-TYPE    111     58     84
D13V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           17                            111
  CLUS_2                           17                             58
  CLUS_3                           26                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        9     10     23     24      5     18
  DEL PEAK  1(1P36.23) WILD-TYPE     91     78     61     51     38     39
D13V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                             91
  CLUS_2                           10                             78
  CLUS_3                           23                             61
  CLUS_4                           24                             51
  CLUS_5                            5                             38
  CLUS_6                           18                             39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       21     22     46
  DEL PEAK  1(1P36.23) WILD-TYPE     74    176    108
D13V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           21                             74
  CLUS_2                           22                            176
  CLUS_3                           46                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       25     20     56
  DEL PEAK  1(1P36.23) WILD-TYPE    190     88    131
D13V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           25                            190
  CLUS_2                           20                             88
  CLUS_3                           56                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED       15     22     38      3      9     14
  DEL PEAK  1(1P36.23) WILD-TYPE    105    154     88     25     23     14
D13V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           15                            105
  CLUS_2                           22                            154
  CLUS_3                           38                             88
  CLUS_4                            3                             25
  CLUS_5                            9                             23
  CLUS_6                           14                             14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       19     24     58
  DEL PEAK  1(1P36.23) WILD-TYPE    103    182    114
D13V9, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           19                            103
  CLUS_2                           24                            182
  CLUS_3                           58                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       42     27     32
  DEL PEAK  1(1P36.23) WILD-TYPE    117    211     71
D13V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           42                            117
  CLUS_2                           27                            211
  CLUS_3                           32                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       10      9     29
  DEL PEAK  1(1P36.23) WILD-TYPE     47     85     60
D13V11, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           10                             47
  CLUS_2                            9                             85
  CLUS_3                           29                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED       31      9      8
  DEL PEAK  1(1P36.23) WILD-TYPE     62     91     39
D13V12, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           31                             62
  CLUS_2                            9                             91
  CLUS_3                            8                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  2(1P31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        2      5      7
  DEL PEAK  2(1P31.1) WILD-TYPE     31     19      6
D14V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           5                            19
  CLUS_3                           7                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED        0      3      2      1      1      1
  DEL PEAK  2(1P31.1) WILD-TYPE     11      9      2     10     12      8
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P31.1) MUTATED        6
  DEL PEAK  2(1P31.1) WILD-TYPE      4
D14V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           3                             9
  CLUS_3                           2                             2
  CLUS_4                           1                            10
  CLUS_5                           1                            12
  CLUS_6                           1                             8
  CLUS_7                           6                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       10     27     40
  DEL PEAK  2(1P31.1) WILD-TYPE    202    125    123
D14V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                           202
  CLUS_2                          27                           125
  CLUS_3                          40                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       12     10     21
  DEL PEAK  2(1P31.1) WILD-TYPE    116     65     89
D14V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          12                           116
  CLUS_2                          10                            65
  CLUS_3                          21                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       10      4     13     21      4     15
  DEL PEAK  2(1P31.1) WILD-TYPE     90     84     71     54     39     42
D14V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          10                            90
  CLUS_2                           4                            84
  CLUS_3                          13                            71
  CLUS_4                          21                            54
  CLUS_5                           4                            39
  CLUS_6                          15                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       15     17     35
  DEL PEAK  2(1P31.1) WILD-TYPE     80    181    119
D14V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          15                            80
  CLUS_2                          17                           181
  CLUS_3                          35                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       20     19     36
  DEL PEAK  2(1P31.1) WILD-TYPE    195     89    151
D14V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          20                           195
  CLUS_2                          19                            89
  CLUS_3                          36                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P31.1) MUTATED       13     15     26      4      4     13
  DEL PEAK  2(1P31.1) WILD-TYPE    107    161    100     24     28     15
D14V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          13                           107
  CLUS_2                          15                           161
  CLUS_3                          26                           100
  CLUS_4                           4                            24
  CLUS_5                           4                            28
  CLUS_6                          13                            15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        9     21     45
  DEL PEAK  2(1P31.1) WILD-TYPE    113    185    127
D14V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           9                           113
  CLUS_2                          21                           185
  CLUS_3                          45                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       21     24     30
  DEL PEAK  2(1P31.1) WILD-TYPE    138    214     73
D14V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          21                           138
  CLUS_2                          24                           214
  CLUS_3                          30                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED        6      7     20
  DEL PEAK  2(1P31.1) WILD-TYPE     51     87     69
D14V11, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           6                            51
  CLUS_2                           7                            87
  CLUS_3                          20                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P31.1) MUTATED       20      6      7
  DEL PEAK  2(1P31.1) WILD-TYPE     73     94     40
D14V12, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          20                            73
  CLUS_2                           6                            94
  CLUS_3                           7                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      1      5
  DEL PEAK  3(1Q43) WILD-TYPE     31     23      8
D15V1, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         1                          23
  CLUS_3                         5                           8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q43) MUTATED        0      1      0      0      1      1      5
  DEL PEAK  3(1Q43) WILD-TYPE     11     11      4     11     12      8      5
D15V2, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         0                          11
  CLUS_2                         1                          11
  CLUS_3                         0                           4
  CLUS_4                         0                          11
  CLUS_5                         1                          12
  CLUS_6                         1                           8
  CLUS_7                         5                           5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        8     20     14
  DEL PEAK  3(1Q43) WILD-TYPE    204    132    149
D15V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         8                         204
  CLUS_2                        20                         132
  CLUS_3                        14                         149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       12      3      9
  DEL PEAK  3(1Q43) WILD-TYPE    116     72    101
D15V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        12                         116
  CLUS_2                         3                          72
  CLUS_3                         9                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED        9      1      5     13      2      5
  DEL PEAK  3(1Q43) WILD-TYPE     91     87     79     62     41     52
D15V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         9                          91
  CLUS_2                         1                          87
  CLUS_3                         5                          79
  CLUS_4                        13                          62
  CLUS_5                         2                          41
  CLUS_6                         5                          52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        5     11     19
  DEL PEAK  3(1Q43) WILD-TYPE     90    187    135
D15V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         5                          90
  CLUS_2                        11                         187
  CLUS_3                        19                         135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       14     17      9
  DEL PEAK  3(1Q43) WILD-TYPE    201     91    178
D15V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        14                         201
  CLUS_2                        17                          91
  CLUS_3                         9                         178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1Q43) MUTATED        6     11      9      0      2     12
  DEL PEAK  3(1Q43) WILD-TYPE    114    165    117     28     30     16
D15V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         6                         114
  CLUS_2                        11                         165
  CLUS_3                         9                         117
  CLUS_4                         0                          28
  CLUS_5                         2                          30
  CLUS_6                        12                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        5     15     20
  DEL PEAK  3(1Q43) WILD-TYPE    117    191    152
D15V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         5                         117
  CLUS_2                        15                         191
  CLUS_3                        20                         152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        9     14     17
  DEL PEAK  3(1Q43) WILD-TYPE    150    224     86
D15V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         9                         150
  CLUS_2                        14                         224
  CLUS_3                        17                          86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        5      7      7
  DEL PEAK  3(1Q43) WILD-TYPE     52     87     82
D15V11, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         5                          52
  CLUS_2                         7                          87
  CLUS_3                         7                          82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       11      6      2
  DEL PEAK  3(1Q43) WILD-TYPE     82     94     45
D15V12, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        11                          82
  CLUS_2                         6                          94
  CLUS_3                         2                          45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        1      4      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     32     20      7
D16V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           4                            20
  CLUS_3                           6                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        0      4      0      0      1      0
  DEL PEAK  4(2Q37.3) WILD-TYPE     11      8      4     11     12      9
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        6
  DEL PEAK  4(2Q37.3) WILD-TYPE      4
D16V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           4                             8
  CLUS_3                           0                             4
  CLUS_4                           0                            11
  CLUS_5                           1                            12
  CLUS_6                           0                             9
  CLUS_7                           6                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       20     13     17
  DEL PEAK  4(2Q37.3) WILD-TYPE    192    139    146
D16V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          20                           192
  CLUS_2                          13                           139
  CLUS_3                          17                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       12      5     12
  DEL PEAK  4(2Q37.3) WILD-TYPE    116     70     98
D16V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          12                           116
  CLUS_2                           5                            70
  CLUS_3                          12                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED        4      9      5     10      3      8
  DEL PEAK  4(2Q37.3) WILD-TYPE     96     79     79     65     40     49
D16V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            96
  CLUS_2                           9                            79
  CLUS_3                           5                            79
  CLUS_4                          10                            65
  CLUS_5                           3                            40
  CLUS_6                           8                            49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        6     16     17
  DEL PEAK  4(2Q37.3) WILD-TYPE     89    182    137
D16V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                            89
  CLUS_2                          16                           182
  CLUS_3                          17                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        9     21     19
  DEL PEAK  4(2Q37.3) WILD-TYPE    206     87    168
D16V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           9                           206
  CLUS_2                          21                            87
  CLUS_3                          19                           168
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       15      7     16      0      1     10
  DEL PEAK  4(2Q37.3) WILD-TYPE    105    169    110     28     31     18
D16V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          15                           105
  CLUS_2                           7                           169
  CLUS_3                          16                           110
  CLUS_4                           0                            28
  CLUS_5                           1                            31
  CLUS_6                          10                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       13     12     23
  DEL PEAK  4(2Q37.3) WILD-TYPE    109    194    149
D16V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          13                           109
  CLUS_2                          12                           194
  CLUS_3                          23                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       14     16     18
  DEL PEAK  4(2Q37.3) WILD-TYPE    145    222     85
D16V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          14                           145
  CLUS_2                          16                           222
  CLUS_3                          18                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        4      5     12
  DEL PEAK  4(2Q37.3) WILD-TYPE     53     89     77
D16V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           4                            53
  CLUS_2                           5                            89
  CLUS_3                          12                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       15      3      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     78     97     44
D16V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          15                            78
  CLUS_2                           3                            97
  CLUS_3                           3                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK  5(3P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED       32     22      3
  DEL PEAK  5(3P25.3) WILD-TYPE      1      2     10
D17V1, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          32                             1
  CLUS_2                          22                             2
  CLUS_3                           3                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.3) MUTATED       11     11      1     11     12      9
  DEL PEAK  5(3P25.3) WILD-TYPE      0      1      3      0      1      0
                               vv
clus                            CLUS_7
  DEL PEAK  5(3P25.3) MUTATED        2
  DEL PEAK  5(3P25.3) WILD-TYPE      8
D17V2, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          11                             0
  CLUS_2                          11                             1
  CLUS_3                           1                             3
  CLUS_4                          11                             0
  CLUS_5                          12                             1
  CLUS_6                           9                             0
  CLUS_7                           2                             8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED      211     93    158
  DEL PEAK  5(3P25.3) WILD-TYPE      1     59      5
D17V3, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         211                             1
  CLUS_2                          93                            59
  CLUS_3                         158                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED      120     52    106
  DEL PEAK  5(3P25.3) WILD-TYPE      8     23      4
D17V4, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         120                             8
  CLUS_2                          52                            23
  CLUS_3                         106                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.3) MUTATED       99     74     76     56     40     52
  DEL PEAK  5(3P25.3) WILD-TYPE      1     14      8     19      3      5
D17V5, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          99                             1
  CLUS_2                          74                            14
  CLUS_3                          76                             8
  CLUS_4                          56                            19
  CLUS_5                          40                             3
  CLUS_6                          52                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED       90    178    129
  DEL PEAK  5(3P25.3) WILD-TYPE      5     20     25
D17V6, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          90                             5
  CLUS_2                         178                            20
  CLUS_3                         129                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED      208     71    169
  DEL PEAK  5(3P25.3) WILD-TYPE      7     37     18
D17V7, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         208                             7
  CLUS_2                          71                            37
  CLUS_3                         169                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P25.3) MUTATED      112    171    110     20     32      3
  DEL PEAK  5(3P25.3) WILD-TYPE      8      5     16      8      0     25
D17V8, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         112                             8
  CLUS_2                         171                             5
  CLUS_3                         110                            16
  CLUS_4                          20                             8
  CLUS_5                          32                             0
  CLUS_6                           3                            25
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED      104    196    138
  DEL PEAK  5(3P25.3) WILD-TYPE     18     10     34
D17V9, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         104                            18
  CLUS_2                         196                            10
  CLUS_3                         138                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED      131    225     82
  DEL PEAK  5(3P25.3) WILD-TYPE     28     13     21
D17V10, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         131                            28
  CLUS_2                         225                            13
  CLUS_3                          82                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED       44     90     73
  DEL PEAK  5(3P25.3) WILD-TYPE     13      4     16
D17V11, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          44                            13
  CLUS_2                          90                             4
  CLUS_3                          73                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P25.3) MUTATED       68     96     43
  DEL PEAK  5(3P25.3) WILD-TYPE     25      4      4
D17V12, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          68                            25
  CLUS_2                          96                             4
  CLUS_3                          43                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK  6(3P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED       20     17      2
  DEL PEAK  6(3P12.3) WILD-TYPE     13      7     11
D18V1, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          20                            13
  CLUS_2                          17                             7
  CLUS_3                           2                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P12.3) MUTATED        6      9      1      8      7      7
  DEL PEAK  6(3P12.3) WILD-TYPE      5      3      3      3      6      2
                               vv
clus                            CLUS_7
  DEL PEAK  6(3P12.3) MUTATED        1
  DEL PEAK  6(3P12.3) WILD-TYPE      9
D18V2, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                           6                             5
  CLUS_2                           9                             3
  CLUS_3                           1                             3
  CLUS_4                           8                             3
  CLUS_5                           7                             6
  CLUS_6                           7                             2
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED      176     17    141
  DEL PEAK  6(3P12.3) WILD-TYPE     36    135     22
D18V3, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                         176                            36
  CLUS_2                          17                           135
  CLUS_3                         141                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED       91     34     79
  DEL PEAK  6(3P12.3) WILD-TYPE     37     41     31
D18V4, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          91                            37
  CLUS_2                          34                            41
  CLUS_3                          79                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P12.3) MUTATED       69     49     55     45     28     38
  DEL PEAK  6(3P12.3) WILD-TYPE     31     39     29     30     15     19
D18V5, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          69                            31
  CLUS_2                          49                            39
  CLUS_3                          55                            29
  CLUS_4                          45                            30
  CLUS_5                          28                            15
  CLUS_6                          38                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED       65    125     94
  DEL PEAK  6(3P12.3) WILD-TYPE     30     73     60
D18V6, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          65                            30
  CLUS_2                         125                            73
  CLUS_3                          94                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED      149     48    129
  DEL PEAK  6(3P12.3) WILD-TYPE     66     60     58
D18V7, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                         149                            66
  CLUS_2                          48                            60
  CLUS_3                         129                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P12.3) MUTATED       83    119     87     14     21      2
  DEL PEAK  6(3P12.3) WILD-TYPE     37     57     39     14     11     26
D18V8, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          83                            37
  CLUS_2                         119                            57
  CLUS_3                          87                            39
  CLUS_4                          14                            14
  CLUS_5                          21                            11
  CLUS_6                           2                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED       68    139    112
  DEL PEAK  6(3P12.3) WILD-TYPE     54     67     60
D18V9, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          68                            54
  CLUS_2                         139                            67
  CLUS_3                         112                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED       94    160     65
  DEL PEAK  6(3P12.3) WILD-TYPE     65     78     38
D18V10, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          94                            65
  CLUS_2                         160                            78
  CLUS_3                          65                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED       29     61     64
  DEL PEAK  6(3P12.3) WILD-TYPE     28     33     25
D18V11, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          29                            28
  CLUS_2                          61                            33
  CLUS_3                          64                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P12.3) MUTATED       53     67     34
  DEL PEAK  6(3P12.3) WILD-TYPE     40     33     13
D18V12, multiclass
        clus
vv       DEL PEAK  6(3P12.3) MUTATED DEL PEAK  6(3P12.3) WILD-TYPE
  CLUS_1                          53                            40
  CLUS_2                          67                            33
  CLUS_3                          34                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  7(3P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED       14     11      2
  DEL PEAK  7(3P11.2) WILD-TYPE     19     13     11
D19V1, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          14                            19
  CLUS_2                          11                            13
  CLUS_3                           2                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P11.2) MUTATED        3      7      1      4      5      6
  DEL PEAK  7(3P11.2) WILD-TYPE      8      5      3      7      8      3
                               vv
clus                            CLUS_7
  DEL PEAK  7(3P11.2) MUTATED        1
  DEL PEAK  7(3P11.2) WILD-TYPE      9
D19V2, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           7                             5
  CLUS_3                           1                             3
  CLUS_4                           4                             7
  CLUS_5                           5                             8
  CLUS_6                           6                             3
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED      137      7    102
  DEL PEAK  7(3P11.2) WILD-TYPE     75    145     61
D19V3, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                         137                            75
  CLUS_2                           7                           145
  CLUS_3                         102                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED       65     28     57
  DEL PEAK  7(3P11.2) WILD-TYPE     63     47     53
D19V4, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          65                            63
  CLUS_2                          28                            47
  CLUS_3                          57                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P11.2) MUTATED       46     37     44     36     22     25
  DEL PEAK  7(3P11.2) WILD-TYPE     54     51     40     39     21     32
D19V5, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          46                            54
  CLUS_2                          37                            51
  CLUS_3                          44                            40
  CLUS_4                          36                            39
  CLUS_5                          22                            21
  CLUS_6                          25                            32
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED       46     99     65
  DEL PEAK  7(3P11.2) WILD-TYPE     49     99     89
D19V6, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          46                            49
  CLUS_2                          99                            99
  CLUS_3                          65                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED      103     42     96
  DEL PEAK  7(3P11.2) WILD-TYPE    112     66     91
D19V7, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                         103                           112
  CLUS_2                          42                            66
  CLUS_3                          96                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P11.2) MUTATED       69     81     69      9     11      2
  DEL PEAK  7(3P11.2) WILD-TYPE     51     95     57     19     21     26
D19V8, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          69                            51
  CLUS_2                          81                            95
  CLUS_3                          69                            57
  CLUS_4                           9                            19
  CLUS_5                          11                            21
  CLUS_6                           2                            26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED       54     97     82
  DEL PEAK  7(3P11.2) WILD-TYPE     68    109     90
D19V9, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          54                            68
  CLUS_2                          97                           109
  CLUS_3                          82                            90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED       73    108     52
  DEL PEAK  7(3P11.2) WILD-TYPE     86    130     51
D19V10, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          73                            86
  CLUS_2                         108                           130
  CLUS_3                          52                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED       22     41     50
  DEL PEAK  7(3P11.2) WILD-TYPE     35     53     39
D19V11, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          22                            35
  CLUS_2                          41                            53
  CLUS_3                          50                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P11.2) MUTATED       43     48     22
  DEL PEAK  7(3P11.2) WILD-TYPE     50     52     25
D19V12, multiclass
        clus
vv       DEL PEAK  7(3P11.2) MUTATED DEL PEAK  7(3P11.2) WILD-TYPE
  CLUS_1                          43                            50
  CLUS_2                          48                            52
  CLUS_3                          22                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  8(3Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       11      8      1
  DEL PEAK  8(3Q11.2) WILD-TYPE     22     16     12
D20V1, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          11                            22
  CLUS_2                           8                            16
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q11.2) MUTATED        3      6      1      2      4      4
  DEL PEAK  8(3Q11.2) WILD-TYPE      8      6      3      9      9      5
                               vv
clus                            CLUS_7
  DEL PEAK  8(3Q11.2) MUTATED        0
  DEL PEAK  8(3Q11.2) WILD-TYPE     10
D20V2, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                           6                             6
  CLUS_3                           1                             3
  CLUS_4                           2                             9
  CLUS_5                           4                             9
  CLUS_6                           4                             5
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       91      6     64
  DEL PEAK  8(3Q11.2) WILD-TYPE    121    146     99
D20V3, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          91                           121
  CLUS_2                           6                           146
  CLUS_3                          64                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       45     15     38
  DEL PEAK  8(3Q11.2) WILD-TYPE     83     60     72
D20V4, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          45                            83
  CLUS_2                          15                            60
  CLUS_3                          38                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q11.2) MUTATED       31     24     31     24     13     18
  DEL PEAK  8(3Q11.2) WILD-TYPE     69     64     53     51     30     39
D20V5, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          31                            69
  CLUS_2                          24                            64
  CLUS_3                          31                            53
  CLUS_4                          24                            51
  CLUS_5                          13                            30
  CLUS_6                          18                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       32     66     43
  DEL PEAK  8(3Q11.2) WILD-TYPE     63    132    111
D20V6, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          32                            63
  CLUS_2                          66                           132
  CLUS_3                          43                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       64     31     63
  DEL PEAK  8(3Q11.2) WILD-TYPE    151     77    124
D20V7, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          64                           151
  CLUS_2                          31                            77
  CLUS_3                          63                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(3Q11.2) MUTATED       51     49     46      6      5      1
  DEL PEAK  8(3Q11.2) WILD-TYPE     69    127     80     22     27     27
D20V8, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          51                            69
  CLUS_2                          49                           127
  CLUS_3                          46                            80
  CLUS_4                           6                            22
  CLUS_5                           5                            27
  CLUS_6                           1                            27
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       35     66     53
  DEL PEAK  8(3Q11.2) WILD-TYPE     87    140    119
D20V9, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          35                            87
  CLUS_2                          66                           140
  CLUS_3                          53                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       47     72     35
  DEL PEAK  8(3Q11.2) WILD-TYPE    112    166     68
D20V10, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          47                           112
  CLUS_2                          72                           166
  CLUS_3                          35                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       15     24     31
  DEL PEAK  8(3Q11.2) WILD-TYPE     42     70     58
D20V11, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          15                            42
  CLUS_2                          24                            70
  CLUS_3                          31                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q11.2) MUTATED       30     27     13
  DEL PEAK  8(3Q11.2) WILD-TYPE     63     73     34
D20V12, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          30                            63
  CLUS_2                          27                            73
  CLUS_3                          13                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  9(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED        6      5      0
  DEL PEAK  9(4Q34.3) WILD-TYPE     27     19     13
D21V1, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           5                            19
  CLUS_3                           0                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q34.3) MUTATED        1      3      0      2      4      1
  DEL PEAK  9(4Q34.3) WILD-TYPE     10      9      4      9      9      8
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q34.3) MUTATED        0
  DEL PEAK  9(4Q34.3) WILD-TYPE     10
D21V2, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           2                             9
  CLUS_5                           4                             9
  CLUS_6                           1                             8
  CLUS_7                           0                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       11     15     52
  DEL PEAK  9(4Q34.3) WILD-TYPE    201    137    111
D21V3, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          11                           201
  CLUS_2                          15                           137
  CLUS_3                          52                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       10      9     34
  DEL PEAK  9(4Q34.3) WILD-TYPE    118     66     76
D21V4, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          10                           118
  CLUS_2                           9                            66
  CLUS_3                          34                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q34.3) MUTATED       15     11     14      9      5     20
  DEL PEAK  9(4Q34.3) WILD-TYPE     85     77     70     66     38     37
D21V5, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          15                            85
  CLUS_2                          11                            77
  CLUS_3                          14                            70
  CLUS_4                           9                            66
  CLUS_5                           5                            38
  CLUS_6                          20                            37
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       14     25     35
  DEL PEAK  9(4Q34.3) WILD-TYPE     81    173    119
D21V6, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          14                            81
  CLUS_2                          25                           173
  CLUS_3                          35                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       26      8     44
  DEL PEAK  9(4Q34.3) WILD-TYPE    189    100    143
D21V7, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          26                           189
  CLUS_2                           8                           100
  CLUS_3                          44                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q34.3) MUTATED       16     18     38      1      5      0
  DEL PEAK  9(4Q34.3) WILD-TYPE    104    158     88     27     27     28
D21V8, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          16                           104
  CLUS_2                          18                           158
  CLUS_3                          38                            88
  CLUS_4                           1                            27
  CLUS_5                           5                            27
  CLUS_6                           0                            28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       18     27     32
  DEL PEAK  9(4Q34.3) WILD-TYPE    104    179    140
D21V9, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          18                           104
  CLUS_2                          27                           179
  CLUS_3                          32                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       38     29     10
  DEL PEAK  9(4Q34.3) WILD-TYPE    121    209     93
D21V10, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          38                           121
  CLUS_2                          29                           209
  CLUS_3                          10                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       10      8     21
  DEL PEAK  9(4Q34.3) WILD-TYPE     47     86     68
D21V11, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          10                            47
  CLUS_2                           8                            86
  CLUS_3                          21                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q34.3) MUTATED       23     10      6
  DEL PEAK  9(4Q34.3) WILD-TYPE     70     90     41
D21V12, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          23                            70
  CLUS_2                          10                            90
  CLUS_3                           6                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 10(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED        7     12      8
  DEL PEAK 10(6Q26) WILD-TYPE     26     12      5
D22V1, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        12                          12
  CLUS_3                         8                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 10(6Q26) MUTATED        2      7      1      5      3      2      7
  DEL PEAK 10(6Q26) WILD-TYPE      9      5      3      6     10      7      3
D22V2, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         1                           3
  CLUS_4                         5                           6
  CLUS_5                         3                          10
  CLUS_6                         2                           7
  CLUS_7                         7                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       33     26     92
  DEL PEAK 10(6Q26) WILD-TYPE    179    126     71
D22V3, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        33                         179
  CLUS_2                        26                         126
  CLUS_3                        92                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       27     14     39
  DEL PEAK 10(6Q26) WILD-TYPE    101     61     71
D22V4, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        27                         101
  CLUS_2                        14                          61
  CLUS_3                        39                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q26) MUTATED       33     10     29     22      8     28
  DEL PEAK 10(6Q26) WILD-TYPE     67     78     55     53     35     29
D22V5, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        33                          67
  CLUS_2                        10                          78
  CLUS_3                        29                          55
  CLUS_4                        22                          53
  CLUS_5                         8                          35
  CLUS_6                        28                          29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       33     39     58
  DEL PEAK 10(6Q26) WILD-TYPE     62    159     96
D22V6, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        33                          62
  CLUS_2                        39                         159
  CLUS_3                        58                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       52     21     72
  DEL PEAK 10(6Q26) WILD-TYPE    163     87    115
D22V7, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        52                         163
  CLUS_2                        21                          87
  CLUS_3                        72                         115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6Q26) MUTATED       27     39     53      5     10     11
  DEL PEAK 10(6Q26) WILD-TYPE     93    137     73     23     22     17
D22V8, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        27                          93
  CLUS_2                        39                         137
  CLUS_3                        53                          73
  CLUS_4                         5                          23
  CLUS_5                        10                          22
  CLUS_6                        11                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       22     45     77
  DEL PEAK 10(6Q26) WILD-TYPE    100    161     95
D22V9, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        22                         100
  CLUS_2                        45                         161
  CLUS_3                        77                          95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       52     53     39
  DEL PEAK 10(6Q26) WILD-TYPE    107    185     64
D22V10, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        52                         107
  CLUS_2                        53                         185
  CLUS_3                        39                          64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       10     18     39
  DEL PEAK 10(6Q26) WILD-TYPE     47     76     50
D22V11, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        10                          47
  CLUS_2                        18                          76
  CLUS_3                        39                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q26) MUTATED       33     21     13
  DEL PEAK 10(6Q26) WILD-TYPE     60     79     34
D22V12, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        33                          60
  CLUS_2                        21                          79
  CLUS_3                        13                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 11(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        7     12      8
  DEL PEAK 11(6Q26) WILD-TYPE     26     12      5
D23V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        12                          12
  CLUS_3                         8                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 11(6Q26) MUTATED        2      7      1      5      3      2      7
  DEL PEAK 11(6Q26) WILD-TYPE      9      5      3      6     10      7      3
D23V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         1                           3
  CLUS_4                         5                           6
  CLUS_5                         3                          10
  CLUS_6                         2                           7
  CLUS_7                         7                           3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       33     26     92
  DEL PEAK 11(6Q26) WILD-TYPE    179    126     71
D23V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        33                         179
  CLUS_2                        26                         126
  CLUS_3                        92                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       27     14     39
  DEL PEAK 11(6Q26) WILD-TYPE    101     61     71
D23V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        27                         101
  CLUS_2                        14                          61
  CLUS_3                        39                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q26) MUTATED       32     10     29     22      8     29
  DEL PEAK 11(6Q26) WILD-TYPE     68     78     55     53     35     28
D23V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        32                          68
  CLUS_2                        10                          78
  CLUS_3                        29                          55
  CLUS_4                        22                          53
  CLUS_5                         8                          35
  CLUS_6                        29                          28
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       33     39     58
  DEL PEAK 11(6Q26) WILD-TYPE     62    159     96
D23V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        33                          62
  CLUS_2                        39                         159
  CLUS_3                        58                          96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       52     20     73
  DEL PEAK 11(6Q26) WILD-TYPE    163     88    114
D23V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        52                         163
  CLUS_2                        20                          88
  CLUS_3                        73                         114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q26) MUTATED       27     39     54      5      9     11
  DEL PEAK 11(6Q26) WILD-TYPE     93    137     72     23     23     17
D23V8, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        27                          93
  CLUS_2                        39                         137
  CLUS_3                        54                          72
  CLUS_4                         5                          23
  CLUS_5                         9                          23
  CLUS_6                        11                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       21     45     78
  DEL PEAK 11(6Q26) WILD-TYPE    101    161     94
D23V9, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        21                         101
  CLUS_2                        45                         161
  CLUS_3                        78                          94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       52     53     39
  DEL PEAK 11(6Q26) WILD-TYPE    107    185     64
D23V10, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        52                         107
  CLUS_2                        53                         185
  CLUS_3                        39                          64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED        9     18     40
  DEL PEAK 11(6Q26) WILD-TYPE     48     76     49
D23V11, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         9                          48
  CLUS_2                        18                          76
  CLUS_3                        40                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       33     21     13
  DEL PEAK 11(6Q26) WILD-TYPE     60     79     34
D23V12, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        33                          60
  CLUS_2                        21                          79
  CLUS_3                        13                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 12(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED        6      7      4
  DEL PEAK 12(8P23.2) WILD-TYPE     27     17      9
D24V1, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           7                            17
  CLUS_3                           4                             9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P23.2) MUTATED        0      3      0      4      3      3
  DEL PEAK 12(8P23.2) WILD-TYPE     11      9      4      7     10      6
                               vv
clus                            CLUS_7
  DEL PEAK 12(8P23.2) MUTATED        4
  DEL PEAK 12(8P23.2) WILD-TYPE      6
D24V2, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                           0                            11
  CLUS_2                           3                             9
  CLUS_3                           0                             4
  CLUS_4                           4                             7
  CLUS_5                           3                            10
  CLUS_6                           3                             6
  CLUS_7                           4                             6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       38     42     74
  DEL PEAK 12(8P23.2) WILD-TYPE    174    110     89
D24V3, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          38                           174
  CLUS_2                          42                           110
  CLUS_3                          74                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       28     19     40
  DEL PEAK 12(8P23.2) WILD-TYPE    100     56     70
D24V4, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          28                           100
  CLUS_2                          19                            56
  CLUS_3                          40                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P23.2) MUTATED       22     28     27     20      8     28
  DEL PEAK 12(8P23.2) WILD-TYPE     78     60     57     55     35     29
D24V5, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          22                            78
  CLUS_2                          28                            60
  CLUS_3                          27                            57
  CLUS_4                          20                            55
  CLUS_5                           8                            35
  CLUS_6                          28                            29
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       27     49     57
  DEL PEAK 12(8P23.2) WILD-TYPE     68    149     97
D24V6, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          27                            68
  CLUS_2                          49                           149
  CLUS_3                          57                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       56     22     73
  DEL PEAK 12(8P23.2) WILD-TYPE    159     86    114
D24V7, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          56                           159
  CLUS_2                          22                            86
  CLUS_3                          73                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P23.2) MUTATED       30     49     60      3      4      5
  DEL PEAK 12(8P23.2) WILD-TYPE     90    127     66     25     28     23
D24V8, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          30                            90
  CLUS_2                          49                           127
  CLUS_3                          60                            66
  CLUS_4                           3                            25
  CLUS_5                           4                            28
  CLUS_6                           5                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       36     45     69
  DEL PEAK 12(8P23.2) WILD-TYPE     86    161    103
D24V9, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          36                            86
  CLUS_2                          45                           161
  CLUS_3                          69                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       63     54     33
  DEL PEAK 12(8P23.2) WILD-TYPE     96    184     70
D24V10, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          63                            96
  CLUS_2                          54                           184
  CLUS_3                          33                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       19     19     31
  DEL PEAK 12(8P23.2) WILD-TYPE     38     75     58
D24V11, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          19                            38
  CLUS_2                          19                            75
  CLUS_3                          31                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.2) MUTATED       37     22     10
  DEL PEAK 12(8P23.2) WILD-TYPE     56     78     37
D24V12, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          37                            56
  CLUS_2                          22                            78
  CLUS_3                          10                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 13(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED        5     12      1
  DEL PEAK 13(9P23) WILD-TYPE     28     12     12
D25V1, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                         5                          28
  CLUS_2                        12                          12
  CLUS_3                         1                          12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 13(9P23) MUTATED        2      7      0      5      1      2      1
  DEL PEAK 13(9P23) WILD-TYPE      9      5      4      6     12      7      9
D25V2, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                         2                           9
  CLUS_2                         7                           5
  CLUS_3                         0                           4
  CLUS_4                         5                           6
  CLUS_5                         1                          12
  CLUS_6                         2                           7
  CLUS_7                         1                           9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED        9     30    113
  DEL PEAK 13(9P23) WILD-TYPE    203    122     50
D25V3, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                         9                         203
  CLUS_2                        30                         122
  CLUS_3                       113                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED        6     21     68
  DEL PEAK 13(9P23) WILD-TYPE    122     54     42
D25V4, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                         6                         122
  CLUS_2                        21                          54
  CLUS_3                        68                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9P23) MUTATED       17     23     33     18     10     35
  DEL PEAK 13(9P23) WILD-TYPE     83     65     51     57     33     22
D25V5, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        17                          83
  CLUS_2                        23                          65
  CLUS_3                        33                          51
  CLUS_4                        18                          57
  CLUS_5                        10                          33
  CLUS_6                        35                          22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       29     42     65
  DEL PEAK 13(9P23) WILD-TYPE     66    156     89
D25V6, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        29                          66
  CLUS_2                        42                         156
  CLUS_3                        65                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       25     16    106
  DEL PEAK 13(9P23) WILD-TYPE    190     92     81
D25V7, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        25                         190
  CLUS_2                        16                          92
  CLUS_3                       106                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(9P23) MUTATED       39     12     79      3     10      4
  DEL PEAK 13(9P23) WILD-TYPE     81    164     47     25     22     24
D25V8, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        39                          81
  CLUS_2                        12                         164
  CLUS_3                        79                          47
  CLUS_4                         3                          25
  CLUS_5                        10                          22
  CLUS_6                         4                          24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       26     27     91
  DEL PEAK 13(9P23) WILD-TYPE     96    179     81
D25V9, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        26                          96
  CLUS_2                        27                         179
  CLUS_3                        91                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       70     36     38
  DEL PEAK 13(9P23) WILD-TYPE     89    202     65
D25V10, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        70                          89
  CLUS_2                        36                         202
  CLUS_3                        38                          65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       15      9     47
  DEL PEAK 13(9P23) WILD-TYPE     42     85     42
D25V11, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        15                          42
  CLUS_2                         9                          85
  CLUS_3                        47                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       41     15     15
  DEL PEAK 13(9P23) WILD-TYPE     52     85     32
D25V12, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        41                          52
  CLUS_2                        15                          85
  CLUS_3                        15                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 14(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED        5     13      1
  DEL PEAK 14(9P21.3) WILD-TYPE     28     11     12
D26V1, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                          13                            11
  CLUS_3                           1                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P21.3) MUTATED        2      7      0      6      1      2
  DEL PEAK 14(9P21.3) WILD-TYPE      9      5      4      5     12      7
                               vv
clus                            CLUS_7
  DEL PEAK 14(9P21.3) MUTATED        1
  DEL PEAK 14(9P21.3) WILD-TYPE      9
D26V2, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                           7                             5
  CLUS_3                           0                             4
  CLUS_4                           6                             5
  CLUS_5                           1                            12
  CLUS_6                           2                             7
  CLUS_7                           1                             9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       12     30    117
  DEL PEAK 14(9P21.3) WILD-TYPE    200    122     46
D26V3, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          12                           200
  CLUS_2                          30                           122
  CLUS_3                         117                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED        6     24     68
  DEL PEAK 14(9P21.3) WILD-TYPE    122     51     42
D26V4, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                           6                           122
  CLUS_2                          24                            51
  CLUS_3                          68                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P21.3) MUTATED       18     26     33     19     10     37
  DEL PEAK 14(9P21.3) WILD-TYPE     82     62     51     56     33     20
D26V5, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          18                            82
  CLUS_2                          26                            62
  CLUS_3                          33                            51
  CLUS_4                          19                            56
  CLUS_5                          10                            33
  CLUS_6                          37                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       29     44     70
  DEL PEAK 14(9P21.3) WILD-TYPE     66    154     84
D26V6, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          29                            66
  CLUS_2                          44                           154
  CLUS_3                          70                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       27     18    109
  DEL PEAK 14(9P21.3) WILD-TYPE    188     90     78
D26V7, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          27                           188
  CLUS_2                          18                            90
  CLUS_3                         109                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P21.3) MUTATED       39     13     85      2     11      4
  DEL PEAK 14(9P21.3) WILD-TYPE     81    163     41     26     21     24
D26V8, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          39                            81
  CLUS_2                          13                           163
  CLUS_3                          85                            41
  CLUS_4                           2                            26
  CLUS_5                          11                            21
  CLUS_6                           4                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       29     28     93
  DEL PEAK 14(9P21.3) WILD-TYPE     93    178     79
D26V9, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          29                            93
  CLUS_2                          28                           178
  CLUS_3                          93                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       76     36     38
  DEL PEAK 14(9P21.3) WILD-TYPE     83    202     65
D26V10, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          76                            83
  CLUS_2                          36                           202
  CLUS_3                          38                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       16      9     46
  DEL PEAK 14(9P21.3) WILD-TYPE     41     85     43
D26V11, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          16                            41
  CLUS_2                           9                            85
  CLUS_3                          46                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       44     15     12
  DEL PEAK 14(9P21.3) WILD-TYPE     49     85     35
D26V12, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          44                            49
  CLUS_2                          15                            85
  CLUS_3                          12                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 15(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED        5      6      4
  DEL PEAK 15(10Q23.31) WILD-TYPE     28     18      9
D27V1, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             5                              28
  CLUS_2                             6                              18
  CLUS_3                             4                               9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(10Q23.31) MUTATED        1      4      0      2      3      1
  DEL PEAK 15(10Q23.31) WILD-TYPE     10      8      4      9     10      8
                                 vv
clus                              CLUS_7
  DEL PEAK 15(10Q23.31) MUTATED        4
  DEL PEAK 15(10Q23.31) WILD-TYPE      6
D27V2, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             1                              10
  CLUS_2                             4                               8
  CLUS_3                             0                               4
  CLUS_4                             2                               9
  CLUS_5                             3                              10
  CLUS_6                             1                               8
  CLUS_7                             4                               6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       20     25     51
  DEL PEAK 15(10Q23.31) WILD-TYPE    192    127    112
D27V3, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            20                             192
  CLUS_2                            25                             127
  CLUS_3                            51                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       17      9     33
  DEL PEAK 15(10Q23.31) WILD-TYPE    111     66     77
D27V4, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            17                             111
  CLUS_2                             9                              66
  CLUS_3                            33                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(10Q23.31) MUTATED       17     17     14     15      8     12
  DEL PEAK 15(10Q23.31) WILD-TYPE     83     71     70     60     35     45
D27V5, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            17                              83
  CLUS_2                            17                              71
  CLUS_3                            14                              70
  CLUS_4                            15                              60
  CLUS_5                             8                              35
  CLUS_6                            12                              45
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       13     28     42
  DEL PEAK 15(10Q23.31) WILD-TYPE     82    170    112
D27V6, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            13                              82
  CLUS_2                            28                             170
  CLUS_3                            42                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       29     22     42
  DEL PEAK 15(10Q23.31) WILD-TYPE    186     86    145
D27V7, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            29                             186
  CLUS_2                            22                              86
  CLUS_3                            42                             145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(10Q23.31) MUTATED       23     19     36      2      3     10
  DEL PEAK 15(10Q23.31) WILD-TYPE     97    157     90     26     29     18
D27V8, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            23                              97
  CLUS_2                            19                             157
  CLUS_3                            36                              90
  CLUS_4                             2                              26
  CLUS_5                             3                              29
  CLUS_6                            10                              18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       22     28     43
  DEL PEAK 15(10Q23.31) WILD-TYPE    100    178    129
D27V9, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            22                             100
  CLUS_2                            28                             178
  CLUS_3                            43                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       37     30     26
  DEL PEAK 15(10Q23.31) WILD-TYPE    122    208     77
D27V10, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            37                             122
  CLUS_2                            30                             208
  CLUS_3                            26                              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       10     11     19
  DEL PEAK 15(10Q23.31) WILD-TYPE     47     83     70
D27V11, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            10                              47
  CLUS_2                            11                              83
  CLUS_3                            19                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10Q23.31) MUTATED       23     11      6
  DEL PEAK 15(10Q23.31) WILD-TYPE     70     89     41
D27V12, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            23                              70
  CLUS_2                            11                              89
  CLUS_3                             6                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 16(13Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED        1      7      3
  DEL PEAK 16(13Q13.3) WILD-TYPE     32     17     10
D28V1, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            7                             17
  CLUS_3                            3                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(13Q13.3) MUTATED        0      3      0      4      1      0
  DEL PEAK 16(13Q13.3) WILD-TYPE     11      9      4      7     12      9
                                vv
clus                             CLUS_7
  DEL PEAK 16(13Q13.3) MUTATED        3
  DEL PEAK 16(13Q13.3) WILD-TYPE      7
D28V2, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                            3                              9
  CLUS_3                            0                              4
  CLUS_4                            4                              7
  CLUS_5                            1                             12
  CLUS_6                            0                              9
  CLUS_7                            3                              7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED       11     26     44
  DEL PEAK 16(13Q13.3) WILD-TYPE    201    126    119
D28V3, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           11                            201
  CLUS_2                           26                            126
  CLUS_3                           44                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED        8     16     26
  DEL PEAK 16(13Q13.3) WILD-TYPE    120     59     84
D28V4, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            8                            120
  CLUS_2                           16                             59
  CLUS_3                           26                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(13Q13.3) MUTATED        3     11     16     13      6     22
  DEL PEAK 16(13Q13.3) WILD-TYPE     97     77     68     62     37     35
D28V5, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            3                             97
  CLUS_2                           11                             77
  CLUS_3                           16                             68
  CLUS_4                           13                             62
  CLUS_5                            6                             37
  CLUS_6                           22                             35
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED       12     22     37
  DEL PEAK 16(13Q13.3) WILD-TYPE     83    176    117
D28V6, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           12                             83
  CLUS_2                           22                            176
  CLUS_3                           37                            117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED       19     12     48
  DEL PEAK 16(13Q13.3) WILD-TYPE    196     96    139
D28V7, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           19                            196
  CLUS_2                           12                             96
  CLUS_3                           48                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(13Q13.3) MUTATED        7     14     43      1      6      8
  DEL PEAK 16(13Q13.3) WILD-TYPE    113    162     83     27     26     20
D28V8, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            7                            113
  CLUS_2                           14                            162
  CLUS_3                           43                             83
  CLUS_4                            1                             27
  CLUS_5                            6                             26
  CLUS_6                            8                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED       13     16     48
  DEL PEAK 16(13Q13.3) WILD-TYPE    109    190    124
D28V9, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           13                            109
  CLUS_2                           16                            190
  CLUS_3                           48                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED       32     18     27
  DEL PEAK 16(13Q13.3) WILD-TYPE    127    220     76
D28V10, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           32                            127
  CLUS_2                           18                            220
  CLUS_3                           27                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED        8     10     21
  DEL PEAK 16(13Q13.3) WILD-TYPE     49     84     68
D28V11, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            8                             49
  CLUS_2                           10                             84
  CLUS_3                           21                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(13Q13.3) MUTATED       25      8      6
  DEL PEAK 16(13Q13.3) WILD-TYPE     68     92     41
D28V12, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           25                             68
  CLUS_2                            8                             92
  CLUS_3                            6                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 17(14Q31.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       10     19      2
  DEL PEAK 17(14Q31.1) WILD-TYPE     23      5     11
D29V1, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           19                              5
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(14Q31.1) MUTATED        4      7      1     11      5      1
  DEL PEAK 17(14Q31.1) WILD-TYPE      7      5      3      0      8      8
                                vv
clus                             CLUS_7
  DEL PEAK 17(14Q31.1) MUTATED        2
  DEL PEAK 17(14Q31.1) WILD-TYPE      8
D29V2, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            7                              5
  CLUS_3                            1                              3
  CLUS_4                           11                              0
  CLUS_5                            5                              8
  CLUS_6                            1                              8
  CLUS_7                            2                              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       67     46    115
  DEL PEAK 17(14Q31.1) WILD-TYPE    145    106     48
D29V3, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           67                            145
  CLUS_2                           46                            106
  CLUS_3                          115                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       32     36     65
  DEL PEAK 17(14Q31.1) WILD-TYPE     96     39     45
D29V4, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           32                             96
  CLUS_2                           36                             39
  CLUS_3                           65                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(14Q31.1) MUTATED       30     30     64     23     13     40
  DEL PEAK 17(14Q31.1) WILD-TYPE     70     58     20     52     30     17
D29V5, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           30                             70
  CLUS_2                           30                             58
  CLUS_3                           64                             20
  CLUS_4                           23                             52
  CLUS_5                           13                             30
  CLUS_6                           40                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       58     67     75
  DEL PEAK 17(14Q31.1) WILD-TYPE     37    131     79
D29V6, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           58                             37
  CLUS_2                           67                            131
  CLUS_3                           75                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       71     19    130
  DEL PEAK 17(14Q31.1) WILD-TYPE    144     89     57
D29V7, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           71                            144
  CLUS_2                           19                             89
  CLUS_3                          130                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(14Q31.1) MUTATED       50     54     77      7     30      2
  DEL PEAK 17(14Q31.1) WILD-TYPE     70    122     49     21      2     26
D29V8, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           50                             70
  CLUS_2                           54                            122
  CLUS_3                           77                             49
  CLUS_4                            7                             21
  CLUS_5                           30                              2
  CLUS_6                            2                             26
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       38     69    112
  DEL PEAK 17(14Q31.1) WILD-TYPE     84    137     60
D29V9, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           38                             84
  CLUS_2                           69                            137
  CLUS_3                          112                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       75     79     65
  DEL PEAK 17(14Q31.1) WILD-TYPE     84    159     38
D29V10, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           75                             84
  CLUS_2                           79                            159
  CLUS_3                           65                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       19     28     58
  DEL PEAK 17(14Q31.1) WILD-TYPE     38     66     31
D29V11, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           19                             38
  CLUS_2                           28                             66
  CLUS_3                           58                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(14Q31.1) MUTATED       43     33     29
  DEL PEAK 17(14Q31.1) WILD-TYPE     50     67     18
D29V12, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           43                             50
  CLUS_2                           33                             67
  CLUS_3                           29                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
