[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTKIRP-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRP-TP/10668117/KIRP-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRP-TP/10013765/transformed.cor.cli.txt"

nPatients in clinical file=242, in cluster file=224, common to both=224
[1]  29 224
[1] "AMP PEAK 1(2P23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          41                          183 
  AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE 
                          41                          183 
[1] "AMP PEAK 2(2Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          48                          176 
  AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE 
                          48                          176 
[1] "AMP PEAK 3(3P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE 
                          64                          160 
  AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE 
                          64                          160 
[1] "AMP PEAK 4(3Q26.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE 
                           80                           144 
  AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE 
                           80                           144 
[1] "AMP PEAK 5(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE 
                         135                           89 
  AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE 
                         135                           89 
[1] "AMP PEAK 6(17Q25.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE 
                          160                            64 
  AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE 
                          160                            64 
[1] "AMP PEAK 7(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE 
                           24                           200 
  AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE 
                           24                           200 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            44                            180 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            44                            180 
[1] "DEL PEAK  2(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                           11                           213 
  DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE 
                           11                           213 
[1] "DEL PEAK  3(3P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                           19                           205 
  DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE 
                           19                           205 
[1] "DEL PEAK  4(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                           26                           198 
  DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE 
                           26                           198 
[1] "DEL PEAK  5(5P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                           10                           214 
  DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE 
                           10                           214 
[1] "DEL PEAK  6(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE 
                           11                           213 
  DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE 
                           11                           213 
[1] "DEL PEAK  7(6P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE 
                           19                           205 
  DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE 
                           19                           205 
[1] "DEL PEAK  8(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE 
                            21                            203 
  DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE 
                            21                            203 
[1] "DEL PEAK  9(6Q27) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                         24                         200 
  DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE 
                         24                         200 
[1] "DEL PEAK 10(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                           33                           191 
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                           33                           191 
[1] "DEL PEAK 11(10P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                             13                             211 
  DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE 
                             13                             211 
[1] "DEL PEAK 12(11Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                            23                            201 
  DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE 
                            23                            201 
[1] "DEL PEAK 13(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                            23                            201 
  DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE 
                            23                            201 
[1] "DEL PEAK 14(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                            44                            180 
  DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE 
                            44                            180 
[1] "DEL PEAK 15(15Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE 
                            29                            195 
  DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE 
                            29                            195 
[1] "DEL PEAK 16(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE 
                             9                            215 
  DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE 
                             9                            215 
[1] "DEL PEAK 17(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE 
                            17                            207 
  DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE 
                            17                            207 
[1] "DEL PEAK 18(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE 
                             16                             208 
  DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE 
                             16                             208 
[1] "DEL PEAK 19(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE 
                            36                            188 
  DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE 
                            36                            188 
[1] "DEL PEAK 20(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE 
                            53                            171 
  DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE 
                            53                            171 
[1] "DEL PEAK 21(XP11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                            21                            203 
  DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE 
                            21                            203 
[1] "DEL PEAK 22(XQ28) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                         20                         204 
  DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE 
                         20                         204 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 224 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 224 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(2P23.2) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED        1     16     24
  AMP PEAK 1(2P23.2) WILD-TYPE     83     91      9
D1V1, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          1                           83
  CLUS_2                         16                           91
  CLUS_3                         24                            9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED        3     14     21
  AMP PEAK 1(2P23.2) WILD-TYPE     53     42     75
D1V2, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          3                           53
  CLUS_2                         14                           42
  CLUS_3                         21                           75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(2P23.2) MUTATED       12     15     13      1
  AMP PEAK 1(2P23.2) WILD-TYPE     35     55     49     31
D1V3, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         12                           35
  CLUS_2                         15                           55
  CLUS_3                         13                           49
  CLUS_4                          1                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       11     12     18
  AMP PEAK 1(2P23.2) WILD-TYPE     62     60     48
D1V4, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         11                           62
  CLUS_2                         12                           60
  CLUS_3                         18                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       11     21      9
  AMP PEAK 1(2P23.2) WILD-TYPE     63     51     69
D1V5, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         11                           63
  CLUS_2                         21                           51
  CLUS_3                          9                           69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       19     10     12
  AMP PEAK 1(2P23.2) WILD-TYPE     86     38     59
D1V6, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         19                           86
  CLUS_2                         10                           38
  CLUS_3                         12                           59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(2P23.2) MUTATED       14     18      9
  AMP PEAK 1(2P23.2) WILD-TYPE     60     51     72
D1V7, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                         14                           60
  CLUS_2                         18                           51
  CLUS_3                          9                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 1(2P23.2) MUTATED        4      5      7      4      3     10      8
  AMP PEAK 1(2P23.2) WILD-TYPE     23     29     29     28     32     30     12
D1V8, multiclass
        clus
vv       AMP PEAK 1(2P23.2) MUTATED AMP PEAK 1(2P23.2) WILD-TYPE
  CLUS_1                          4                           23
  CLUS_2                          5                           29
  CLUS_3                          7                           29
  CLUS_4                          4                           28
  CLUS_5                          3                           32
  CLUS_6                         10                           30
  CLUS_7                          8                           12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(2Q32.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED        1     22     25
  AMP PEAK 2(2Q32.1) WILD-TYPE     83     85      8
D2V1, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          1                           83
  CLUS_2                         22                           85
  CLUS_3                         25                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED        6     15     24
  AMP PEAK 2(2Q32.1) WILD-TYPE     50     41     72
D2V2, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          6                           50
  CLUS_2                         15                           41
  CLUS_3                         24                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(2Q32.1) MUTATED       14     18     14      2
  AMP PEAK 2(2Q32.1) WILD-TYPE     33     52     48     30
D2V3, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         14                           33
  CLUS_2                         18                           52
  CLUS_3                         14                           48
  CLUS_4                          2                           30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       18     11     19
  AMP PEAK 2(2Q32.1) WILD-TYPE     55     61     47
D2V4, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         18                           55
  CLUS_2                         11                           61
  CLUS_3                         19                           47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       15     20     13
  AMP PEAK 2(2Q32.1) WILD-TYPE     59     52     65
D2V5, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         15                           59
  CLUS_2                         20                           52
  CLUS_3                         13                           65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       23     12     13
  AMP PEAK 2(2Q32.1) WILD-TYPE     82     36     58
D2V6, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         23                           82
  CLUS_2                         12                           36
  CLUS_3                         13                           58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2Q32.1) MUTATED       20     17     11
  AMP PEAK 2(2Q32.1) WILD-TYPE     54     52     70
D2V7, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                         20                           54
  CLUS_2                         17                           52
  CLUS_3                         11                           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 2(2Q32.1) MUTATED        4     10      7      5      6     10      6
  AMP PEAK 2(2Q32.1) WILD-TYPE     23     24     29     27     29     30     14
D2V8, multiclass
        clus
vv       AMP PEAK 2(2Q32.1) MUTATED AMP PEAK 2(2Q32.1) WILD-TYPE
  CLUS_1                          4                           23
  CLUS_2                         10                           24
  CLUS_3                          7                           29
  CLUS_4                          5                           27
  CLUS_5                          6                           29
  CLUS_6                         10                           30
  CLUS_7                          6                           14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(3P12.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3P12.1) MUTATED       29      9     26
  AMP PEAK 3(3P12.1) WILD-TYPE     55     98      7
D3V1, multiclass
        clus
vv       AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE
  CLUS_1                         29                           55
  CLUS_2                          9                           98
  CLUS_3                         26                            7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3P12.1) MUTATED       17      7     35
  AMP PEAK 3(3P12.1) WILD-TYPE     39     49     61
D3V2, multiclass
        clus
vv       AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE
  CLUS_1                         17                           39
  CLUS_2                          7                           49
  CLUS_3                         35                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(3P12.1) MUTATED       23      8     24      7
  AMP PEAK 3(3P12.1) WILD-TYPE     24     62     38     25
D3V3, multiclass
        clus
vv       AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE
  CLUS_1                         23                           24
  CLUS_2                          8                           62
  CLUS_3                         24                           38
  CLUS_4                          7                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3P12.1) MUTATED       23     10     29
  AMP PEAK 3(3P12.1) WILD-TYPE     50     62     37
D3V4, multiclass
        clus
vv       AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE
  CLUS_1                         23                           50
  CLUS_2                         10                           62
  CLUS_3                         29                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3P12.1) MUTATED       22     25     17
  AMP PEAK 3(3P12.1) WILD-TYPE     52     47     61
D3V5, multiclass
        clus
vv       AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE
  CLUS_1                         22                           52
  CLUS_2                         25                           47
  CLUS_3                         17                           61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3P12.1) MUTATED       34     19     11
  AMP PEAK 3(3P12.1) WILD-TYPE     71     29     60
D3V6, multiclass
        clus
vv       AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE
  CLUS_1                         34                           71
  CLUS_2                         19                           29
  CLUS_3                         11                           60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3P12.1) MUTATED       21     24     19
  AMP PEAK 3(3P12.1) WILD-TYPE     53     45     62
D3V7, multiclass
        clus
vv       AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE
  CLUS_1                         21                           53
  CLUS_2                         24                           45
  CLUS_3                         19                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 3(3P12.1) MUTATED       13      2     11      7      6     21      4
  AMP PEAK 3(3P12.1) WILD-TYPE     14     32     25     25     29     19     16
D3V8, multiclass
        clus
vv       AMP PEAK 3(3P12.1) MUTATED AMP PEAK 3(3P12.1) WILD-TYPE
  CLUS_1                         13                           14
  CLUS_2                          2                           32
  CLUS_3                         11                           25
  CLUS_4                          7                           25
  CLUS_5                          6                           29
  CLUS_6                         21                           19
  CLUS_7                          4                           16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(3Q26.31) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(3Q26.31) MUTATED       35     16     29
  AMP PEAK 4(3Q26.31) WILD-TYPE     49     91      4
D4V1, multiclass
        clus
vv       AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE
  CLUS_1                          35                            49
  CLUS_2                          16                            91
  CLUS_3                          29                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(3Q26.31) MUTATED       18     14     42
  AMP PEAK 4(3Q26.31) WILD-TYPE     38     42     54
D4V2, multiclass
        clus
vv       AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE
  CLUS_1                          18                            38
  CLUS_2                          14                            42
  CLUS_3                          42                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(3Q26.31) MUTATED       26     11     26     14
  AMP PEAK 4(3Q26.31) WILD-TYPE     21     59     36     18
D4V3, multiclass
        clus
vv       AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE
  CLUS_1                          26                            21
  CLUS_2                          11                            59
  CLUS_3                          26                            36
  CLUS_4                          14                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(3Q26.31) MUTATED       26     17     34
  AMP PEAK 4(3Q26.31) WILD-TYPE     47     55     32
D4V4, multiclass
        clus
vv       AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE
  CLUS_1                          26                            47
  CLUS_2                          17                            55
  CLUS_3                          34                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(3Q26.31) MUTATED       31     29     20
  AMP PEAK 4(3Q26.31) WILD-TYPE     43     43     58
D4V5, multiclass
        clus
vv       AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE
  CLUS_1                          31                            43
  CLUS_2                          29                            43
  CLUS_3                          20                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(3Q26.31) MUTATED       42     22     16
  AMP PEAK 4(3Q26.31) WILD-TYPE     63     26     55
D4V6, multiclass
        clus
vv       AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE
  CLUS_1                          42                            63
  CLUS_2                          22                            26
  CLUS_3                          16                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(3Q26.31) MUTATED       28     28     24
  AMP PEAK 4(3Q26.31) WILD-TYPE     46     41     57
D4V7, multiclass
        clus
vv       AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE
  CLUS_1                          28                            46
  CLUS_2                          28                            41
  CLUS_3                          24                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 4(3Q26.31) MUTATED       16      4     13      9      7     26
  AMP PEAK 4(3Q26.31) WILD-TYPE     11     30     23     23     28     14
                               vv
clus                            CLUS_7
  AMP PEAK 4(3Q26.31) MUTATED        5
  AMP PEAK 4(3Q26.31) WILD-TYPE     15
D4V8, multiclass
        clus
vv       AMP PEAK 4(3Q26.31) MUTATED AMP PEAK 4(3Q26.31) WILD-TYPE
  CLUS_1                          16                            11
  CLUS_2                           4                            30
  CLUS_3                          13                            23
  CLUS_4                           9                            23
  CLUS_5                           7                            28
  CLUS_6                          26                            14
  CLUS_7                           5                            15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(7Q22.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q22.1) MUTATED       79     29     27
  AMP PEAK 5(7Q22.1) WILD-TYPE      5     78      6
D5V1, multiclass
        clus
vv       AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE
  CLUS_1                         79                            5
  CLUS_2                         29                           78
  CLUS_3                         27                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q22.1) MUTATED       28     18     78
  AMP PEAK 5(7Q22.1) WILD-TYPE     28     38     18
D5V2, multiclass
        clus
vv       AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE
  CLUS_1                         28                           28
  CLUS_2                         18                           38
  CLUS_3                         78                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(7Q22.1) MUTATED       27     22     55     25
  AMP PEAK 5(7Q22.1) WILD-TYPE     20     48      7      7
D5V3, multiclass
        clus
vv       AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE
  CLUS_1                         27                           20
  CLUS_2                         22                           48
  CLUS_3                         55                            7
  CLUS_4                         25                            7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q22.1) MUTATED       32     37     60
  AMP PEAK 5(7Q22.1) WILD-TYPE     41     35      6
D5V4, multiclass
        clus
vv       AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE
  CLUS_1                         32                           41
  CLUS_2                         37                           35
  CLUS_3                         60                            6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q22.1) MUTATED       39     50     46
  AMP PEAK 5(7Q22.1) WILD-TYPE     35     22     32
D5V5, multiclass
        clus
vv       AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE
  CLUS_1                         39                           35
  CLUS_2                         50                           22
  CLUS_3                         46                           32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q22.1) MUTATED       59     38     38
  AMP PEAK 5(7Q22.1) WILD-TYPE     46     10     33
D5V6, multiclass
        clus
vv       AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE
  CLUS_1                         59                           46
  CLUS_2                         38                           10
  CLUS_3                         38                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(7Q22.1) MUTATED       37     50     48
  AMP PEAK 5(7Q22.1) WILD-TYPE     37     19     33
D5V7, multiclass
        clus
vv       AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE
  CLUS_1                         37                           37
  CLUS_2                         50                           19
  CLUS_3                         48                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 5(7Q22.1) MUTATED       15     10     28     24     20     32      6
  AMP PEAK 5(7Q22.1) WILD-TYPE     12     24      8      8     15      8     14
D5V8, multiclass
        clus
vv       AMP PEAK 5(7Q22.1) MUTATED AMP PEAK 5(7Q22.1) WILD-TYPE
  CLUS_1                         15                           12
  CLUS_2                         10                           24
  CLUS_3                         28                            8
  CLUS_4                         24                            8
  CLUS_5                         20                           15
  CLUS_6                         32                            8
  CLUS_7                          6                           14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(17Q25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       83     47     30
  AMP PEAK 6(17Q25.2) WILD-TYPE      1     60      3
D6V1, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          83                             1
  CLUS_2                          47                            60
  CLUS_3                          30                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       33     33     82
  AMP PEAK 6(17Q25.2) WILD-TYPE     23     23     14
D6V2, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          33                            23
  CLUS_2                          33                            23
  CLUS_3                          82                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(17Q25.2) MUTATED       37     38     56     23
  AMP PEAK 6(17Q25.2) WILD-TYPE     10     32      6      9
D6V3, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          37                            10
  CLUS_2                          38                            32
  CLUS_3                          56                             6
  CLUS_4                          23                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       49     44     61
  AMP PEAK 6(17Q25.2) WILD-TYPE     24     28      5
D6V4, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          49                            24
  CLUS_2                          44                            28
  CLUS_3                          61                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       48     56     56
  AMP PEAK 6(17Q25.2) WILD-TYPE     26     16     22
D6V5, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          48                            26
  CLUS_2                          56                            16
  CLUS_3                          56                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       71     40     49
  AMP PEAK 6(17Q25.2) WILD-TYPE     34      8     22
D6V6, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          71                            34
  CLUS_2                          40                             8
  CLUS_3                          49                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(17Q25.2) MUTATED       48     54     58
  AMP PEAK 6(17Q25.2) WILD-TYPE     26     15     23
D6V7, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          48                            26
  CLUS_2                          54                            15
  CLUS_3                          58                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(17Q25.2) MUTATED       17     19     28     27     26     33
  AMP PEAK 6(17Q25.2) WILD-TYPE     10     15      8      5      9      7
                               vv
clus                            CLUS_7
  AMP PEAK 6(17Q25.2) MUTATED       10
  AMP PEAK 6(17Q25.2) WILD-TYPE     10
D6V8, multiclass
        clus
vv       AMP PEAK 6(17Q25.2) MUTATED AMP PEAK 6(17Q25.2) WILD-TYPE
  CLUS_1                          17                            10
  CLUS_2                          19                            15
  CLUS_3                          28                             8
  CLUS_4                          27                             5
  CLUS_5                          26                             9
  CLUS_6                          33                             7
  CLUS_7                          10                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK 7(19P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED       14      7      3
  AMP PEAK 7(19P13.2) WILD-TYPE     70    100     30
D7V1, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                          14                            70
  CLUS_2                           7                           100
  CLUS_3                           3                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        2      3     15
  AMP PEAK 7(19P13.2) WILD-TYPE     54     53     81
D7V2, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           2                            54
  CLUS_2                           3                            53
  CLUS_3                          15                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(19P13.2) MUTATED        1      7     13      3
  AMP PEAK 7(19P13.2) WILD-TYPE     46     63     49     29
D7V3, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           7                            63
  CLUS_3                          13                            49
  CLUS_4                           3                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        3     11     10
  AMP PEAK 7(19P13.2) WILD-TYPE     70     61     56
D7V4, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           3                            70
  CLUS_2                          11                            61
  CLUS_3                          10                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        5     10      9
  AMP PEAK 7(19P13.2) WILD-TYPE     69     62     69
D7V5, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           5                            69
  CLUS_2                          10                            62
  CLUS_3                           9                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED       11      5      8
  AMP PEAK 7(19P13.2) WILD-TYPE     94     43     63
D7V6, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                          11                            94
  CLUS_2                           5                            43
  CLUS_3                           8                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(19P13.2) MUTATED        5     11      8
  AMP PEAK 7(19P13.2) WILD-TYPE     69     58     73
D7V7, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           5                            69
  CLUS_2                          11                            58
  CLUS_3                           8                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 7(19P13.2) MUTATED        0      3      7      7      0      5
  AMP PEAK 7(19P13.2) WILD-TYPE     27     31     29     25     35     35
                               vv
clus                            CLUS_7
  AMP PEAK 7(19P13.2) MUTATED        2
  AMP PEAK 7(19P13.2) WILD-TYPE     18
D7V8, multiclass
        clus
vv       AMP PEAK 7(19P13.2) MUTATED AMP PEAK 7(19P13.2) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                           3                            31
  CLUS_3                           7                            29
  CLUS_4                           7                            25
  CLUS_5                           0                            35
  CLUS_6                           5                            35
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        1     34      9
  DEL PEAK  1(1P36.32) WILD-TYPE     83     73     24
D8V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            1                             83
  CLUS_2                           34                             73
  CLUS_3                            9                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       10     22      9
  DEL PEAK  1(1P36.32) WILD-TYPE     46     34     87
D8V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           10                             46
  CLUS_2                           22                             34
  CLUS_3                            9                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        5     31      5      0
  DEL PEAK  1(1P36.32) WILD-TYPE     42     39     57     32
D8V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                             42
  CLUS_2                           31                             39
  CLUS_3                            5                             57
  CLUS_4                            0                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       15     19      7
  DEL PEAK  1(1P36.32) WILD-TYPE     58     53     59
D8V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           15                             58
  CLUS_2                           19                             53
  CLUS_3                            7                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       16     13     15
  DEL PEAK  1(1P36.32) WILD-TYPE     58     59     63
D8V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           16                             58
  CLUS_2                           13                             59
  CLUS_3                           15                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       21     10     13
  DEL PEAK  1(1P36.32) WILD-TYPE     84     38     58
D8V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           21                             84
  CLUS_2                           10                             38
  CLUS_3                           13                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       18     11     15
  DEL PEAK  1(1P36.32) WILD-TYPE     56     58     66
D8V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           18                             56
  CLUS_2                           11                             58
  CLUS_3                           15                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        2     13      7      1      7      7
  DEL PEAK  1(1P36.32) WILD-TYPE     25     21     29     31     28     33
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED        7
  DEL PEAK  1(1P36.32) WILD-TYPE     13
D8V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                           13                             21
  CLUS_3                            7                             29
  CLUS_4                            1                             31
  CLUS_5                            7                             28
  CLUS_6                            7                             33
  CLUS_7                            7                             13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  2(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.3) MUTATED        0      9      2
  DEL PEAK  2(2Q37.3) WILD-TYPE     84     98     31
D9V1, multiclass
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  CLUS_1                           0                            84
  CLUS_2                           9                            98
  CLUS_3                           2                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.3) MUTATED        3      6      0
  DEL PEAK  2(2Q37.3) WILD-TYPE     53     50     96
D9V2, multiclass
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                           6                            50
  CLUS_3                           0                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(2Q37.3) MUTATED        2      6      1      0
  DEL PEAK  2(2Q37.3) WILD-TYPE     45     64     61     32
D9V3, multiclass
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  CLUS_1                           2                            45
  CLUS_2                           6                            64
  CLUS_3                           1                            61
  CLUS_4                           0                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.3) MUTATED        7      2      0
  DEL PEAK  2(2Q37.3) WILD-TYPE     66     70     66
D9V4, multiclass
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  CLUS_1                           7                            66
  CLUS_2                           2                            70
  CLUS_3                           0                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.3) MUTATED        7      1      3
  DEL PEAK  2(2Q37.3) WILD-TYPE     67     71     75
D9V5, multiclass
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  CLUS_1                           7                            67
  CLUS_2                           1                            71
  CLUS_3                           3                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.3) MUTATED        7      0      4
  DEL PEAK  2(2Q37.3) WILD-TYPE     98     48     67
D9V6, multiclass
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  CLUS_1                           7                            98
  CLUS_2                           0                            48
  CLUS_3                           4                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(2Q37.3) MUTATED        8      1      2
  DEL PEAK  2(2Q37.3) WILD-TYPE     66     68     79
D9V7, multiclass
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  CLUS_1                           8                            66
  CLUS_2                           1                            68
  CLUS_3                           2                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(2Q37.3) MUTATED        2      5      0      0      2      0
  DEL PEAK  2(2Q37.3) WILD-TYPE     25     29     36     32     33     40
                               vv
clus                            CLUS_7
  DEL PEAK  2(2Q37.3) MUTATED        2
  DEL PEAK  2(2Q37.3) WILD-TYPE     18
D9V8, multiclass
        clus
vv       DEL PEAK  2(2Q37.3) MUTATED DEL PEAK  2(2Q37.3) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           5                            29
  CLUS_3                           0                            36
  CLUS_4                           0                            32
  CLUS_5                           2                            33
  CLUS_6                           0                            40
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  3(3P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P22.1) MUTATED        0     16      3
  DEL PEAK  3(3P22.1) WILD-TYPE     84     91     30
D10V1, multiclass
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  CLUS_1                           0                            84
  CLUS_2                          16                            91
  CLUS_3                           3                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P22.1) MUTATED        3     14      1
  DEL PEAK  3(3P22.1) WILD-TYPE     53     42     95
D10V2, multiclass
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                          14                            42
  CLUS_3                           1                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(3P22.1) MUTATED        1     16      0      0
  DEL PEAK  3(3P22.1) WILD-TYPE     46     54     62     32
D10V3, multiclass
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                          16                            54
  CLUS_3                           0                            62
  CLUS_4                           0                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P22.1) MUTATED       11      6      0
  DEL PEAK  3(3P22.1) WILD-TYPE     62     66     66
D10V4, multiclass
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  CLUS_1                          11                            62
  CLUS_2                           6                            66
  CLUS_3                           0                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P22.1) MUTATED        8      2      9
  DEL PEAK  3(3P22.1) WILD-TYPE     66     70     69
D10V5, multiclass
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  CLUS_1                           8                            66
  CLUS_2                           2                            70
  CLUS_3                           9                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P22.1) MUTATED        9      1      9
  DEL PEAK  3(3P22.1) WILD-TYPE     96     47     62
D10V6, multiclass
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  CLUS_1                           9                            96
  CLUS_2                           1                            47
  CLUS_3                           9                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(3P22.1) MUTATED       10      2      7
  DEL PEAK  3(3P22.1) WILD-TYPE     64     67     74
D10V7, multiclass
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  CLUS_1                          10                            64
  CLUS_2                           2                            67
  CLUS_3                           7                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(3P22.1) MUTATED        0     10      1      0      5      0
  DEL PEAK  3(3P22.1) WILD-TYPE     27     24     35     32     30     40
                               vv
clus                            CLUS_7
  DEL PEAK  3(3P22.1) MUTATED        3
  DEL PEAK  3(3P22.1) WILD-TYPE     17
D10V8, multiclass
        clus
vv       DEL PEAK  3(3P22.1) MUTATED DEL PEAK  3(3P22.1) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                          10                            24
  CLUS_3                           1                            35
  CLUS_4                           0                            32
  CLUS_5                           5                            30
  CLUS_6                           0                            40
  CLUS_7                           3                            17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  4(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q34.3) MUTATED        1     20      5
  DEL PEAK  4(4Q34.3) WILD-TYPE     83     87     28
D11V1, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           1                            83
  CLUS_2                          20                            87
  CLUS_3                           5                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q34.3) MUTATED        3     19      2
  DEL PEAK  4(4Q34.3) WILD-TYPE     53     37     94
D11V2, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                          19                            37
  CLUS_3                           2                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(4Q34.3) MUTATED        2     22      1      0
  DEL PEAK  4(4Q34.3) WILD-TYPE     45     48     61     32
D11V3, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           2                            45
  CLUS_2                          22                            48
  CLUS_3                           1                            61
  CLUS_4                           0                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q34.3) MUTATED       10     13      2
  DEL PEAK  4(4Q34.3) WILD-TYPE     63     59     64
D11V4, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                          10                            63
  CLUS_2                          13                            59
  CLUS_3                           2                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q34.3) MUTATED        7      7     12
  DEL PEAK  4(4Q34.3) WILD-TYPE     67     65     66
D11V5, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           7                            67
  CLUS_2                           7                            65
  CLUS_3                          12                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q34.3) MUTATED       11      3     12
  DEL PEAK  4(4Q34.3) WILD-TYPE     94     45     59
D11V6, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                          11                            94
  CLUS_2                           3                            45
  CLUS_3                          12                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(4Q34.3) MUTATED        9      7     10
  DEL PEAK  4(4Q34.3) WILD-TYPE     65     62     71
D11V7, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           9                            65
  CLUS_2                           7                            62
  CLUS_3                          10                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(4Q34.3) MUTATED        2      8      3      0      2      2
  DEL PEAK  4(4Q34.3) WILD-TYPE     25     26     33     32     33     38
                               vv
clus                            CLUS_7
  DEL PEAK  4(4Q34.3) MUTATED        9
  DEL PEAK  4(4Q34.3) WILD-TYPE     11
D11V8, multiclass
        clus
vv       DEL PEAK  4(4Q34.3) MUTATED DEL PEAK  4(4Q34.3) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           8                            26
  CLUS_3                           3                            33
  CLUS_4                           0                            32
  CLUS_5                           2                            33
  CLUS_6                           2                            38
  CLUS_7                           9                            11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  5(5P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(5P14.2) MUTATED        2      7      1
  DEL PEAK  5(5P14.2) WILD-TYPE     82    100     32
D12V1, multiclass
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  CLUS_1                           2                            82
  CLUS_2                           7                           100
  CLUS_3                           1                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(5P14.2) MUTATED        1      7      2
  DEL PEAK  5(5P14.2) WILD-TYPE     55     49     94
D12V2, multiclass
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  CLUS_1                           1                            55
  CLUS_2                           7                            49
  CLUS_3                           2                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(5P14.2) MUTATED        1      7      1      1
  DEL PEAK  5(5P14.2) WILD-TYPE     46     63     61     31
D12V3, multiclass
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           7                            63
  CLUS_3                           1                            61
  CLUS_4                           1                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(5P14.2) MUTATED        3      6      1
  DEL PEAK  5(5P14.2) WILD-TYPE     70     66     65
D12V4, multiclass
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  CLUS_1                           3                            70
  CLUS_2                           6                            66
  CLUS_3                           1                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(5P14.2) MUTATED        3      1      6
  DEL PEAK  5(5P14.2) WILD-TYPE     71     71     72
D12V5, multiclass
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  CLUS_1                           3                            71
  CLUS_2                           1                            71
  CLUS_3                           6                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(5P14.2) MUTATED        3      1      6
  DEL PEAK  5(5P14.2) WILD-TYPE    102     47     65
D12V6, multiclass
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  CLUS_1                           3                           102
  CLUS_2                           1                            47
  CLUS_3                           6                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(5P14.2) MUTATED        3      1      6
  DEL PEAK  5(5P14.2) WILD-TYPE     71     68     75
D12V7, multiclass
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  CLUS_1                           3                            71
  CLUS_2                           1                            68
  CLUS_3                           6                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(5P14.2) MUTATED        1      1      1      0      2      1
  DEL PEAK  5(5P14.2) WILD-TYPE     26     33     35     32     33     39
                               vv
clus                            CLUS_7
  DEL PEAK  5(5P14.2) MUTATED        4
  DEL PEAK  5(5P14.2) WILD-TYPE     16
D12V8, multiclass
        clus
vv       DEL PEAK  5(5P14.2) MUTATED DEL PEAK  5(5P14.2) WILD-TYPE
  CLUS_1                           1                            26
  CLUS_2                           1                            33
  CLUS_3                           1                            35
  CLUS_4                           0                            32
  CLUS_5                           2                            33
  CLUS_6                           1                            39
  CLUS_7                           4                            16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  6(5Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q35.2) MUTATED        0      9      2
  DEL PEAK  6(5Q35.2) WILD-TYPE     84     98     31
D13V1, multiclass
        clus
vv       DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE
  CLUS_1                           0                            84
  CLUS_2                           9                            98
  CLUS_3                           2                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q35.2) MUTATED        1      9      0
  DEL PEAK  6(5Q35.2) WILD-TYPE     55     47     96
D13V2, multiclass
        clus
vv       DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE
  CLUS_1                           1                            55
  CLUS_2                           9                            47
  CLUS_3                           0                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(5Q35.2) MUTATED        1     10      0      0
  DEL PEAK  6(5Q35.2) WILD-TYPE     46     60     62     32
D13V3, multiclass
        clus
vv       DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                          10                            60
  CLUS_3                           0                            62
  CLUS_4                           0                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q35.2) MUTATED        2      9      0
  DEL PEAK  6(5Q35.2) WILD-TYPE     71     63     66
D13V4, multiclass
        clus
vv       DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE
  CLUS_1                           2                            71
  CLUS_2                           9                            63
  CLUS_3                           0                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q35.2) MUTATED        1      2      8
  DEL PEAK  6(5Q35.2) WILD-TYPE     73     70     70
D13V5, multiclass
        clus
vv       DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE
  CLUS_1                           1                            73
  CLUS_2                           2                            70
  CLUS_3                           8                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q35.2) MUTATED        2      0      9
  DEL PEAK  6(5Q35.2) WILD-TYPE    103     48     62
D13V6, multiclass
        clus
vv       DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE
  CLUS_1                           2                           103
  CLUS_2                           0                            48
  CLUS_3                           9                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q35.2) MUTATED        2      2      7
  DEL PEAK  6(5Q35.2) WILD-TYPE     72     67     74
D13V7, multiclass
        clus
vv       DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE
  CLUS_1                           2                            72
  CLUS_2                           2                            67
  CLUS_3                           7                            74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(5Q35.2) MUTATED        0      2      0      0      0      1
  DEL PEAK  6(5Q35.2) WILD-TYPE     27     32     36     32     35     39
                               vv
clus                            CLUS_7
  DEL PEAK  6(5Q35.2) MUTATED        8
  DEL PEAK  6(5Q35.2) WILD-TYPE     12
D13V8, multiclass
        clus
vv       DEL PEAK  6(5Q35.2) MUTATED DEL PEAK  6(5Q35.2) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                           2                            32
  CLUS_3                           0                            36
  CLUS_4                           0                            32
  CLUS_5                           0                            35
  CLUS_6                           1                            39
  CLUS_7                           8                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  7(6P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        1     11      7
  DEL PEAK  7(6P12.3) WILD-TYPE     83     96     26
D14V1, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           1                            83
  CLUS_2                          11                            96
  CLUS_3                           7                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        3     10      5
  DEL PEAK  7(6P12.3) WILD-TYPE     53     46     91
D14V2, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           3                            53
  CLUS_2                          10                            46
  CLUS_3                           5                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(6P12.3) MUTATED        2     13      4      0
  DEL PEAK  7(6P12.3) WILD-TYPE     45     57     58     32
D14V3, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           2                            45
  CLUS_2                          13                            57
  CLUS_3                           4                            58
  CLUS_4                           0                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        6      9      4
  DEL PEAK  7(6P12.3) WILD-TYPE     67     63     62
D14V4, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           6                            67
  CLUS_2                           9                            63
  CLUS_3                           4                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        4      9      6
  DEL PEAK  7(6P12.3) WILD-TYPE     70     63     72
D14V5, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           4                            70
  CLUS_2                           9                            63
  CLUS_3                           6                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        7      6      6
  DEL PEAK  7(6P12.3) WILD-TYPE     98     42     65
D14V6, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           7                            98
  CLUS_2                           6                            42
  CLUS_3                           6                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6P12.3) MUTATED        4     10      5
  DEL PEAK  7(6P12.3) WILD-TYPE     70     59     76
D14V7, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           4                            70
  CLUS_2                          10                            59
  CLUS_3                           5                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(6P12.3) MUTATED        1      3      6      0      5      2
  DEL PEAK  7(6P12.3) WILD-TYPE     26     31     30     32     30     38
                               vv
clus                            CLUS_7
  DEL PEAK  7(6P12.3) MUTATED        2
  DEL PEAK  7(6P12.3) WILD-TYPE     18
D14V8, multiclass
        clus
vv       DEL PEAK  7(6P12.3) MUTATED DEL PEAK  7(6P12.3) WILD-TYPE
  CLUS_1                           1                            26
  CLUS_2                           3                            31
  CLUS_3                           6                            30
  CLUS_4                           0                            32
  CLUS_5                           5                            30
  CLUS_6                           2                            38
  CLUS_7                           2                            18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  8(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.31) MUTATED        1     13      7
  DEL PEAK  8(6Q22.31) WILD-TYPE     83     94     26
D15V1, multiclass
        clus
vv       DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE
  CLUS_1                            1                             83
  CLUS_2                           13                             94
  CLUS_3                            7                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.31) MUTATED        6     10      4
  DEL PEAK  8(6Q22.31) WILD-TYPE     50     46     92
D15V2, multiclass
        clus
vv       DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                           10                             46
  CLUS_3                            4                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(6Q22.31) MUTATED        2     16      3      0
  DEL PEAK  8(6Q22.31) WILD-TYPE     45     54     59     32
D15V3, multiclass
        clus
vv       DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE
  CLUS_1                            2                             45
  CLUS_2                           16                             54
  CLUS_3                            3                             59
  CLUS_4                            0                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.31) MUTATED        8     10      3
  DEL PEAK  8(6Q22.31) WILD-TYPE     65     62     63
D15V4, multiclass
        clus
vv       DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE
  CLUS_1                            8                             65
  CLUS_2                           10                             62
  CLUS_3                            3                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.31) MUTATED        5      8      8
  DEL PEAK  8(6Q22.31) WILD-TYPE     69     64     70
D15V5, multiclass
        clus
vv       DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE
  CLUS_1                            5                             69
  CLUS_2                            8                             64
  CLUS_3                            8                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.31) MUTATED        7      6      8
  DEL PEAK  8(6Q22.31) WILD-TYPE     98     42     63
D15V6, multiclass
        clus
vv       DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE
  CLUS_1                            7                             98
  CLUS_2                            6                             42
  CLUS_3                            8                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(6Q22.31) MUTATED        5      7      9
  DEL PEAK  8(6Q22.31) WILD-TYPE     69     62     72
D15V7, multiclass
        clus
vv       DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE
  CLUS_1                            5                             69
  CLUS_2                            7                             62
  CLUS_3                            9                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(6Q22.31) MUTATED        0      4      6      0      8      1
  DEL PEAK  8(6Q22.31) WILD-TYPE     27     30     30     32     27     39
                                vv
clus                             CLUS_7
  DEL PEAK  8(6Q22.31) MUTATED        2
  DEL PEAK  8(6Q22.31) WILD-TYPE     18
D15V8, multiclass
        clus
vv       DEL PEAK  8(6Q22.31) MUTATED DEL PEAK  8(6Q22.31) WILD-TYPE
  CLUS_1                            0                             27
  CLUS_2                            4                             30
  CLUS_3                            6                             30
  CLUS_4                            0                             32
  CLUS_5                            8                             27
  CLUS_6                            1                             39
  CLUS_7                            2                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  9(6Q27) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q27) MUTATED        1     15      8
  DEL PEAK  9(6Q27) WILD-TYPE     83     92     25
D16V1, multiclass
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  CLUS_1                         1                          83
  CLUS_2                        15                          92
  CLUS_3                         8                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q27) MUTATED        5     14      4
  DEL PEAK  9(6Q27) WILD-TYPE     51     42     92
D16V2, multiclass
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  CLUS_1                         5                          51
  CLUS_2                        14                          42
  CLUS_3                         4                          92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6Q27) MUTATED        3     18      3      0
  DEL PEAK  9(6Q27) WILD-TYPE     44     52     59     32
D16V3, multiclass
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  CLUS_1                         3                          44
  CLUS_2                        18                          52
  CLUS_3                         3                          59
  CLUS_4                         0                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q27) MUTATED        9     12      3
  DEL PEAK  9(6Q27) WILD-TYPE     64     60     63
D16V4, multiclass
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  CLUS_1                         9                          64
  CLUS_2                        12                          60
  CLUS_3                         3                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q27) MUTATED        6     10      8
  DEL PEAK  9(6Q27) WILD-TYPE     68     62     70
D16V5, multiclass
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  CLUS_1                         6                          68
  CLUS_2                        10                          62
  CLUS_3                         8                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q27) MUTATED        9      6      9
  DEL PEAK  9(6Q27) WILD-TYPE     96     42     62
D16V6, multiclass
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  CLUS_1                         9                          96
  CLUS_2                         6                          42
  CLUS_3                         9                          62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6Q27) MUTATED        6      9      9
  DEL PEAK  9(6Q27) WILD-TYPE     68     60     72
D16V7, multiclass
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  CLUS_1                         6                          68
  CLUS_2                         9                          60
  CLUS_3                         9                          72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  9(6Q27) MUTATED        1      5      6      0      7      1      4
  DEL PEAK  9(6Q27) WILD-TYPE     26     29     30     32     28     39     16
D16V8, multiclass
        clus
vv       DEL PEAK  9(6Q27) MUTATED DEL PEAK  9(6Q27) WILD-TYPE
  CLUS_1                         1                          26
  CLUS_2                         5                          29
  CLUS_3                         6                          30
  CLUS_4                         0                          32
  CLUS_5                         7                          28
  CLUS_6                         1                          39
  CLUS_7                         4                          16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 10(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(9P21.3) MUTATED        1     25      7
  DEL PEAK 10(9P21.3) WILD-TYPE     83     82     26
D17V1, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           1                            83
  CLUS_2                          25                            82
  CLUS_3                           7                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(9P21.3) MUTATED        9     19      2
  DEL PEAK 10(9P21.3) WILD-TYPE     47     37     94
D17V2, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           9                            47
  CLUS_2                          19                            37
  CLUS_3                           2                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(9P21.3) MUTATED        3     28      0      1
  DEL PEAK 10(9P21.3) WILD-TYPE     44     42     62     31
D17V3, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           3                            44
  CLUS_2                          28                            42
  CLUS_3                           0                            62
  CLUS_4                           1                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(9P21.3) MUTATED       10     21      1
  DEL PEAK 10(9P21.3) WILD-TYPE     63     51     65
D17V4, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                          10                            63
  CLUS_2                          21                            51
  CLUS_3                           1                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(9P21.3) MUTATED        4     11     18
  DEL PEAK 10(9P21.3) WILD-TYPE     70     61     60
D17V5, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           4                            70
  CLUS_2                          11                            61
  CLUS_3                          18                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(9P21.3) MUTATED        8      8     17
  DEL PEAK 10(9P21.3) WILD-TYPE     97     40     54
D17V6, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           8                            97
  CLUS_2                           8                            40
  CLUS_3                          17                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(9P21.3) MUTATED        6     10     17
  DEL PEAK 10(9P21.3) WILD-TYPE     68     59     64
D17V7, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           6                            68
  CLUS_2                          10                            59
  CLUS_3                          17                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(9P21.3) MUTATED        0      7      5      0     10      3
  DEL PEAK 10(9P21.3) WILD-TYPE     27     27     31     32     25     37
                               vv
clus                            CLUS_7
  DEL PEAK 10(9P21.3) MUTATED        8
  DEL PEAK 10(9P21.3) WILD-TYPE     12
D17V8, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                           7                            27
  CLUS_3                           5                            31
  CLUS_4                           0                            32
  CLUS_5                          10                            25
  CLUS_6                           3                            37
  CLUS_7                           8                            12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 11(10P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10P11.21) MUTATED        0     10      3
  DEL PEAK 11(10P11.21) WILD-TYPE     84     97     30
D18V1, multiclass
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  CLUS_1                             0                              84
  CLUS_2                            10                              97
  CLUS_3                             3                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10P11.21) MUTATED        1      9      2
  DEL PEAK 11(10P11.21) WILD-TYPE     55     47     94
D18V2, multiclass
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  CLUS_1                             1                              55
  CLUS_2                             9                              47
  CLUS_3                             2                              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(10P11.21) MUTATED        0     12      1      0
  DEL PEAK 11(10P11.21) WILD-TYPE     47     58     61     32
D18V3, multiclass
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  CLUS_1                             0                              47
  CLUS_2                            12                              58
  CLUS_3                             1                              61
  CLUS_4                             0                              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10P11.21) MUTATED        7      5      1
  DEL PEAK 11(10P11.21) WILD-TYPE     66     67     65
D18V4, multiclass
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  CLUS_1                             7                              66
  CLUS_2                             5                              67
  CLUS_3                             1                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10P11.21) MUTATED        2      3      8
  DEL PEAK 11(10P11.21) WILD-TYPE     72     69     70
D18V5, multiclass
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  CLUS_1                             2                              72
  CLUS_2                             3                              69
  CLUS_3                             8                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10P11.21) MUTATED        6      2      5
  DEL PEAK 11(10P11.21) WILD-TYPE     99     46     66
D18V6, multiclass
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  CLUS_1                             6                              99
  CLUS_2                             2                              46
  CLUS_3                             5                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10P11.21) MUTATED        3      3      7
  DEL PEAK 11(10P11.21) WILD-TYPE     71     66     74
D18V7, multiclass
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  CLUS_1                             3                              71
  CLUS_2                             3                              66
  CLUS_3                             7                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(10P11.21) MUTATED        0      5      2      0      4      1
  DEL PEAK 11(10P11.21) WILD-TYPE     27     29     34     32     31     39
                                 vv
clus                              CLUS_7
  DEL PEAK 11(10P11.21) MUTATED        1
  DEL PEAK 11(10P11.21) WILD-TYPE     19
D18V8, multiclass
        clus
vv       DEL PEAK 11(10P11.21) MUTATED DEL PEAK 11(10P11.21) WILD-TYPE
  CLUS_1                             0                              27
  CLUS_2                             5                              29
  CLUS_3                             2                              34
  CLUS_4                             0                              32
  CLUS_5                             4                              31
  CLUS_6                             1                              39
  CLUS_7                             1                              19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 12(11Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(11Q22.3) MUTATED        1     16      6
  DEL PEAK 12(11Q22.3) WILD-TYPE     83     91     27
D19V1, multiclass
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  CLUS_1                            1                             83
  CLUS_2                           16                             91
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(11Q22.3) MUTATED        6     13      3
  DEL PEAK 12(11Q22.3) WILD-TYPE     50     43     93
D19V2, multiclass
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                           13                             43
  CLUS_3                            3                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(11Q22.3) MUTATED        2     16      2      1
  DEL PEAK 12(11Q22.3) WILD-TYPE     45     54     60     31
D19V3, multiclass
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  CLUS_1                            2                             45
  CLUS_2                           16                             54
  CLUS_3                            2                             60
  CLUS_4                            1                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(11Q22.3) MUTATED        7     12      2
  DEL PEAK 12(11Q22.3) WILD-TYPE     66     60     64
D19V4, multiclass
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  CLUS_1                            7                             66
  CLUS_2                           12                             60
  CLUS_3                            2                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(11Q22.3) MUTATED        6      5     12
  DEL PEAK 12(11Q22.3) WILD-TYPE     68     67     66
D19V5, multiclass
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                            5                             67
  CLUS_3                           12                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(11Q22.3) MUTATED        8      4     11
  DEL PEAK 12(11Q22.3) WILD-TYPE     97     44     60
D19V6, multiclass
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  CLUS_1                            8                             97
  CLUS_2                            4                             44
  CLUS_3                           11                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(11Q22.3) MUTATED        6      5     12
  DEL PEAK 12(11Q22.3) WILD-TYPE     68     64     69
D19V7, multiclass
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                            5                             64
  CLUS_3                           12                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(11Q22.3) MUTATED        2      4      2      2      7      2
  DEL PEAK 12(11Q22.3) WILD-TYPE     25     30     34     30     28     38
                                vv
clus                             CLUS_7
  DEL PEAK 12(11Q22.3) MUTATED        4
  DEL PEAK 12(11Q22.3) WILD-TYPE     16
D19V8, multiclass
        clus
vv       DEL PEAK 12(11Q22.3) MUTATED DEL PEAK 12(11Q22.3) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            4                             30
  CLUS_3                            2                             34
  CLUS_4                            2                             30
  CLUS_5                            7                             28
  CLUS_6                            2                             38
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 13(11Q24.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q24.2) MUTATED        2     15      6
  DEL PEAK 13(11Q24.2) WILD-TYPE     82     92     27
D20V1, multiclass
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  CLUS_1                            2                             82
  CLUS_2                           15                             92
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q24.2) MUTATED        6     14      2
  DEL PEAK 13(11Q24.2) WILD-TYPE     50     42     94
D20V2, multiclass
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  CLUS_1                            6                             50
  CLUS_2                           14                             42
  CLUS_3                            2                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(11Q24.2) MUTATED        2     16      1      2
  DEL PEAK 13(11Q24.2) WILD-TYPE     45     54     61     30
D20V3, multiclass
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  CLUS_1                            2                             45
  CLUS_2                           16                             54
  CLUS_3                            1                             61
  CLUS_4                            2                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q24.2) MUTATED        7     12      2
  DEL PEAK 13(11Q24.2) WILD-TYPE     66     60     64
D20V4, multiclass
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  CLUS_1                            7                             66
  CLUS_2                           12                             60
  CLUS_3                            2                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q24.2) MUTATED        6      5     12
  DEL PEAK 13(11Q24.2) WILD-TYPE     68     67     66
D20V5, multiclass
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                            5                             67
  CLUS_3                           12                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q24.2) MUTATED        9      3     11
  DEL PEAK 13(11Q24.2) WILD-TYPE     96     45     60
D20V6, multiclass
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  CLUS_1                            9                             96
  CLUS_2                            3                             45
  CLUS_3                           11                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(11Q24.2) MUTATED        6      5     12
  DEL PEAK 13(11Q24.2) WILD-TYPE     68     64     69
D20V7, multiclass
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                            5                             64
  CLUS_3                           12                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(11Q24.2) MUTATED        2      5      2      0      8      2
  DEL PEAK 13(11Q24.2) WILD-TYPE     25     29     34     32     27     38
                                vv
clus                             CLUS_7
  DEL PEAK 13(11Q24.2) MUTATED        4
  DEL PEAK 13(11Q24.2) WILD-TYPE     16
D20V8, multiclass
        clus
vv       DEL PEAK 13(11Q24.2) MUTATED DEL PEAK 13(11Q24.2) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            5                             29
  CLUS_3                            2                             34
  CLUS_4                            0                             32
  CLUS_5                            8                             27
  CLUS_6                            2                             38
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 14(14Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q11.2) MUTATED        3     32      9
  DEL PEAK 14(14Q11.2) WILD-TYPE     81     75     24
D21V1, multiclass
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  CLUS_1                            3                             81
  CLUS_2                           32                             75
  CLUS_3                            9                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q11.2) MUTATED       13     15     11
  DEL PEAK 14(14Q11.2) WILD-TYPE     43     41     85
D21V2, multiclass
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  CLUS_1                           13                             43
  CLUS_2                           15                             41
  CLUS_3                           11                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(14Q11.2) MUTATED       10     24      5      3
  DEL PEAK 14(14Q11.2) WILD-TYPE     37     46     57     29
D21V3, multiclass
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           24                             46
  CLUS_3                            5                             57
  CLUS_4                            3                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q11.2) MUTATED       14     23      5
  DEL PEAK 14(14Q11.2) WILD-TYPE     59     49     61
D21V4, multiclass
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  CLUS_1                           14                             59
  CLUS_2                           23                             49
  CLUS_3                            5                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q11.2) MUTATED       12     14     18
  DEL PEAK 14(14Q11.2) WILD-TYPE     62     58     60
D21V5, multiclass
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  CLUS_1                           12                             62
  CLUS_2                           14                             58
  CLUS_3                           18                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q11.2) MUTATED       18     12     14
  DEL PEAK 14(14Q11.2) WILD-TYPE     87     36     57
D21V6, multiclass
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  CLUS_1                           18                             87
  CLUS_2                           12                             36
  CLUS_3                           14                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q11.2) MUTATED       15     11     18
  DEL PEAK 14(14Q11.2) WILD-TYPE     59     58     63
D21V7, multiclass
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  CLUS_1                           15                             59
  CLUS_2                           11                             58
  CLUS_3                           18                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(14Q11.2) MUTATED        3     11      6      2      9      7
  DEL PEAK 14(14Q11.2) WILD-TYPE     24     23     30     30     26     33
                                vv
clus                             CLUS_7
  DEL PEAK 14(14Q11.2) MUTATED        6
  DEL PEAK 14(14Q11.2) WILD-TYPE     14
D21V8, multiclass
        clus
vv       DEL PEAK 14(14Q11.2) MUTATED DEL PEAK 14(14Q11.2) WILD-TYPE
  CLUS_1                            3                             24
  CLUS_2                           11                             23
  CLUS_3                            6                             30
  CLUS_4                            2                             30
  CLUS_5                            9                             26
  CLUS_6                            7                             33
  CLUS_7                            6                             14
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 15(15Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q13.3) MUTATED        1     21      7
  DEL PEAK 15(15Q13.3) WILD-TYPE     83     86     26
D22V1, multiclass
        clus
vv       DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE
  CLUS_1                            1                             83
  CLUS_2                           21                             86
  CLUS_3                            7                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q13.3) MUTATED       10     14      3
  DEL PEAK 15(15Q13.3) WILD-TYPE     46     42     93
D22V2, multiclass
        clus
vv       DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE
  CLUS_1                           10                             46
  CLUS_2                           14                             42
  CLUS_3                            3                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(15Q13.3) MUTATED        4     20      2      0
  DEL PEAK 15(15Q13.3) WILD-TYPE     43     50     60     32
D22V3, multiclass
        clus
vv       DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE
  CLUS_1                            4                             43
  CLUS_2                           20                             50
  CLUS_3                            2                             60
  CLUS_4                            0                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q13.3) MUTATED        6     17      3
  DEL PEAK 15(15Q13.3) WILD-TYPE     67     55     63
D22V4, multiclass
        clus
vv       DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE
  CLUS_1                            6                             67
  CLUS_2                           17                             55
  CLUS_3                            3                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q13.3) MUTATED        6      8     15
  DEL PEAK 15(15Q13.3) WILD-TYPE     68     64     63
D22V5, multiclass
        clus
vv       DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                            8                             64
  CLUS_3                           15                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q13.3) MUTATED        9      7     13
  DEL PEAK 15(15Q13.3) WILD-TYPE     96     41     58
D22V6, multiclass
        clus
vv       DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE
  CLUS_1                            9                             96
  CLUS_2                            7                             41
  CLUS_3                           13                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q13.3) MUTATED        7      7     15
  DEL PEAK 15(15Q13.3) WILD-TYPE     67     62     66
D22V7, multiclass
        clus
vv       DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE
  CLUS_1                            7                             67
  CLUS_2                            7                             62
  CLUS_3                           15                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(15Q13.3) MUTATED        1      5      6      1      6      2
  DEL PEAK 15(15Q13.3) WILD-TYPE     26     29     30     31     29     38
                                vv
clus                             CLUS_7
  DEL PEAK 15(15Q13.3) MUTATED        8
  DEL PEAK 15(15Q13.3) WILD-TYPE     12
D22V8, multiclass
        clus
vv       DEL PEAK 15(15Q13.3) MUTATED DEL PEAK 15(15Q13.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            5                             29
  CLUS_3                            6                             30
  CLUS_4                            1                             31
  CLUS_5                            6                             29
  CLUS_6                            2                             38
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 16(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q24.1) MUTATED        0      8      1
  DEL PEAK 16(16Q24.1) WILD-TYPE     84     99     32
D23V1, multiclass
        clus
vv       DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE
  CLUS_1                            0                             84
  CLUS_2                            8                             99
  CLUS_3                            1                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q24.1) MUTATED        0      9      0
  DEL PEAK 16(16Q24.1) WILD-TYPE     56     47     96
D23V2, multiclass
        clus
vv       DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE
  CLUS_1                            0                             56
  CLUS_2                            9                             47
  CLUS_3                            0                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(16Q24.1) MUTATED        1      7      0      0
  DEL PEAK 16(16Q24.1) WILD-TYPE     46     63     62     32
D23V3, multiclass
        clus
vv       DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE
  CLUS_1                            1                             46
  CLUS_2                            7                             63
  CLUS_3                            0                             62
  CLUS_4                            0                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q24.1) MUTATED        3      5      0
  DEL PEAK 16(16Q24.1) WILD-TYPE     70     67     66
D23V4, multiclass
        clus
vv       DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE
  CLUS_1                            3                             70
  CLUS_2                            5                             67
  CLUS_3                            0                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q24.1) MUTATED        2      3      4
  DEL PEAK 16(16Q24.1) WILD-TYPE     72     69     74
D23V5, multiclass
        clus
vv       DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE
  CLUS_1                            2                             72
  CLUS_2                            3                             69
  CLUS_3                            4                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q24.1) MUTATED        4      0      5
  DEL PEAK 16(16Q24.1) WILD-TYPE    101     48     66
D23V6, multiclass
        clus
vv       DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE
  CLUS_1                            4                            101
  CLUS_2                            0                             48
  CLUS_3                            5                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16Q24.1) MUTATED        3      2      4
  DEL PEAK 16(16Q24.1) WILD-TYPE     71     67     77
D23V7, multiclass
        clus
vv       DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE
  CLUS_1                            3                             71
  CLUS_2                            2                             67
  CLUS_3                            4                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(16Q24.1) MUTATED        1      3      0      0      1      0
  DEL PEAK 16(16Q24.1) WILD-TYPE     26     31     36     32     34     40
                                vv
clus                             CLUS_7
  DEL PEAK 16(16Q24.1) MUTATED        4
  DEL PEAK 16(16Q24.1) WILD-TYPE     16
D23V8, multiclass
        clus
vv       DEL PEAK 16(16Q24.1) MUTATED DEL PEAK 16(16Q24.1) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            3                             31
  CLUS_3                            0                             36
  CLUS_4                            0                             32
  CLUS_5                            1                             34
  CLUS_6                            0                             40
  CLUS_7                            4                             16
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 17(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(19P13.3) MUTATED        4      7      6
  DEL PEAK 17(19P13.3) WILD-TYPE     80    100     27
D24V1, multiclass
        clus
vv       DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            4                             80
  CLUS_2                            7                            100
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(19P13.3) MUTATED        2      9      5
  DEL PEAK 17(19P13.3) WILD-TYPE     54     47     91
D24V2, multiclass
        clus
vv       DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            2                             54
  CLUS_2                            9                             47
  CLUS_3                            5                             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(19P13.3) MUTATED        5     10      2      0
  DEL PEAK 17(19P13.3) WILD-TYPE     42     60     60     32
D24V3, multiclass
        clus
vv       DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            5                             42
  CLUS_2                           10                             60
  CLUS_3                            2                             60
  CLUS_4                            0                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(19P13.3) MUTATED        8      4      5
  DEL PEAK 17(19P13.3) WILD-TYPE     65     68     61
D24V4, multiclass
        clus
vv       DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            8                             65
  CLUS_2                            4                             68
  CLUS_3                            5                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(19P13.3) MUTATED        7      2      8
  DEL PEAK 17(19P13.3) WILD-TYPE     67     70     70
D24V5, multiclass
        clus
vv       DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            7                             67
  CLUS_2                            2                             70
  CLUS_3                            8                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(19P13.3) MUTATED       10      2      5
  DEL PEAK 17(19P13.3) WILD-TYPE     95     46     66
D24V6, multiclass
        clus
vv       DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                           10                             95
  CLUS_2                            2                             46
  CLUS_3                            5                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(19P13.3) MUTATED        7      2      8
  DEL PEAK 17(19P13.3) WILD-TYPE     67     67     73
D24V7, multiclass
        clus
vv       DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            7                             67
  CLUS_2                            2                             67
  CLUS_3                            8                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(19P13.3) MUTATED        2      4      1      0      4      4
  DEL PEAK 17(19P13.3) WILD-TYPE     25     30     35     32     31     36
                                vv
clus                             CLUS_7
  DEL PEAK 17(19P13.3) MUTATED        2
  DEL PEAK 17(19P13.3) WILD-TYPE     18
D24V8, multiclass
        clus
vv       DEL PEAK 17(19P13.3) MUTATED DEL PEAK 17(19P13.3) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            4                             30
  CLUS_3                            1                             35
  CLUS_4                            0                             32
  CLUS_5                            4                             31
  CLUS_6                            4                             36
  CLUS_7                            2                             18
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 18(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(19Q13.42) MUTATED        4      7      5
  DEL PEAK 18(19Q13.42) WILD-TYPE     80    100     28
D25V1, multiclass
        clus
vv       DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE
  CLUS_1                             4                              80
  CLUS_2                             7                             100
  CLUS_3                             5                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(19Q13.42) MUTATED        2      9      5
  DEL PEAK 18(19Q13.42) WILD-TYPE     54     47     91
D25V2, multiclass
        clus
vv       DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE
  CLUS_1                             2                              54
  CLUS_2                             9                              47
  CLUS_3                             5                              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(19Q13.42) MUTATED        5     10      1      0
  DEL PEAK 18(19Q13.42) WILD-TYPE     42     60     61     32
D25V3, multiclass
        clus
vv       DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE
  CLUS_1                             5                              42
  CLUS_2                            10                              60
  CLUS_3                             1                              61
  CLUS_4                             0                              32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(19Q13.42) MUTATED        8      4      4
  DEL PEAK 18(19Q13.42) WILD-TYPE     65     68     62
D25V4, multiclass
        clus
vv       DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE
  CLUS_1                             8                              65
  CLUS_2                             4                              68
  CLUS_3                             4                              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(19Q13.42) MUTATED        6      2      8
  DEL PEAK 18(19Q13.42) WILD-TYPE     68     70     70
D25V5, multiclass
        clus
vv       DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE
  CLUS_1                             6                              68
  CLUS_2                             2                              70
  CLUS_3                             8                              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(19Q13.42) MUTATED        8      2      6
  DEL PEAK 18(19Q13.42) WILD-TYPE     97     46     65
D25V6, multiclass
        clus
vv       DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE
  CLUS_1                             8                              97
  CLUS_2                             2                              46
  CLUS_3                             6                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(19Q13.42) MUTATED        7      1      8
  DEL PEAK 18(19Q13.42) WILD-TYPE     67     68     73
D25V7, multiclass
        clus
vv       DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE
  CLUS_1                             7                              67
  CLUS_2                             1                              68
  CLUS_3                             8                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(19Q13.42) MUTATED        1      4      0      0      4      4
  DEL PEAK 18(19Q13.42) WILD-TYPE     26     30     36     32     31     36
                                 vv
clus                              CLUS_7
  DEL PEAK 18(19Q13.42) MUTATED        3
  DEL PEAK 18(19Q13.42) WILD-TYPE     17
D25V8, multiclass
        clus
vv       DEL PEAK 18(19Q13.42) MUTATED DEL PEAK 18(19Q13.42) WILD-TYPE
  CLUS_1                             1                              26
  CLUS_2                             4                              30
  CLUS_3                             0                              36
  CLUS_4                             0                              32
  CLUS_5                             4                              31
  CLUS_6                             4                              36
  CLUS_7                             3                              17
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 19(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(21Q22.3) MUTATED        8     13     15
  DEL PEAK 19(21Q22.3) WILD-TYPE     76     94     18
D26V1, multiclass
        clus
vv       DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE
  CLUS_1                            8                             76
  CLUS_2                           13                             94
  CLUS_3                           15                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(21Q22.3) MUTATED        7     12     13
  DEL PEAK 19(21Q22.3) WILD-TYPE     49     44     83
D26V2, multiclass
        clus
vv       DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE
  CLUS_1                            7                             49
  CLUS_2                           12                             44
  CLUS_3                           13                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(21Q22.3) MUTATED       10     14      6      4
  DEL PEAK 19(21Q22.3) WILD-TYPE     37     56     56     28
D26V3, multiclass
        clus
vv       DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           14                             56
  CLUS_3                            6                             56
  CLUS_4                            4                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(21Q22.3) MUTATED       11     11     12
  DEL PEAK 19(21Q22.3) WILD-TYPE     62     61     54
D26V4, multiclass
        clus
vv       DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE
  CLUS_1                           11                             62
  CLUS_2                           11                             61
  CLUS_3                           12                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(21Q22.3) MUTATED       14     14      8
  DEL PEAK 19(21Q22.3) WILD-TYPE     60     58     70
D26V5, multiclass
        clus
vv       DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE
  CLUS_1                           14                             60
  CLUS_2                           14                             58
  CLUS_3                            8                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(21Q22.3) MUTATED       18     10      8
  DEL PEAK 19(21Q22.3) WILD-TYPE     87     38     63
D26V6, multiclass
        clus
vv       DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE
  CLUS_1                           18                             87
  CLUS_2                           10                             38
  CLUS_3                            8                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(21Q22.3) MUTATED       14     13      9
  DEL PEAK 19(21Q22.3) WILD-TYPE     60     56     72
D26V7, multiclass
        clus
vv       DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE
  CLUS_1                           14                             60
  CLUS_2                           13                             56
  CLUS_3                            9                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(21Q22.3) MUTATED        1      7      7      2      4     10
  DEL PEAK 19(21Q22.3) WILD-TYPE     26     27     29     30     31     30
                                vv
clus                             CLUS_7
  DEL PEAK 19(21Q22.3) MUTATED        5
  DEL PEAK 19(21Q22.3) WILD-TYPE     15
D26V8, multiclass
        clus
vv       DEL PEAK 19(21Q22.3) MUTATED DEL PEAK 19(21Q22.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            7                             27
  CLUS_3                            7                             29
  CLUS_4                            2                             30
  CLUS_5                            4                             31
  CLUS_6                           10                             30
  CLUS_7                            5                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 20(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.2) MUTATED        7     38      8
  DEL PEAK 20(22Q12.2) WILD-TYPE     77     69     25
D27V1, multiclass
        clus
vv       DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE
  CLUS_1                            7                             77
  CLUS_2                           38                             69
  CLUS_3                            8                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.2) MUTATED        8     31     11
  DEL PEAK 20(22Q12.2) WILD-TYPE     48     25     85
D27V2, multiclass
        clus
vv       DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE
  CLUS_1                            8                             48
  CLUS_2                           31                             25
  CLUS_3                           11                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(22Q12.2) MUTATED        8     36      5      2
  DEL PEAK 20(22Q12.2) WILD-TYPE     39     34     57     30
D27V3, multiclass
        clus
vv       DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           36                             34
  CLUS_3                            5                             57
  CLUS_4                            2                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.2) MUTATED       21     21      9
  DEL PEAK 20(22Q12.2) WILD-TYPE     52     51     57
D27V4, multiclass
        clus
vv       DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE
  CLUS_1                           21                             52
  CLUS_2                           21                             51
  CLUS_3                            9                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.2) MUTATED       19     16     18
  DEL PEAK 20(22Q12.2) WILD-TYPE     55     56     60
D27V5, multiclass
        clus
vv       DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE
  CLUS_1                           19                             55
  CLUS_2                           16                             56
  CLUS_3                           18                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.2) MUTATED       26     11     16
  DEL PEAK 20(22Q12.2) WILD-TYPE     79     37     55
D27V6, multiclass
        clus
vv       DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE
  CLUS_1                           26                             79
  CLUS_2                           11                             37
  CLUS_3                           16                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(22Q12.2) MUTATED       21     14     18
  DEL PEAK 20(22Q12.2) WILD-TYPE     53     55     63
D27V7, multiclass
        clus
vv       DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE
  CLUS_1                           21                             53
  CLUS_2                           14                             55
  CLUS_3                           18                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(22Q12.2) MUTATED        2     20      9      1      8      5
  DEL PEAK 20(22Q12.2) WILD-TYPE     25     14     27     31     27     35
                                vv
clus                             CLUS_7
  DEL PEAK 20(22Q12.2) MUTATED        8
  DEL PEAK 20(22Q12.2) WILD-TYPE     12
D27V8, multiclass
        clus
vv       DEL PEAK 20(22Q12.2) MUTATED DEL PEAK 20(22Q12.2) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                           20                             14
  CLUS_3                            9                             27
  CLUS_4                            1                             31
  CLUS_5                            8                             27
  CLUS_6                            5                             35
  CLUS_7                            8                             12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 21(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP11.22) MUTATED        0     15      6
  DEL PEAK 21(XP11.22) WILD-TYPE     84     92     27
D28V1, multiclass
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            0                             84
  CLUS_2                           15                             92
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP11.22) MUTATED        3     15      1
  DEL PEAK 21(XP11.22) WILD-TYPE     53     41     95
D28V2, multiclass
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            3                             53
  CLUS_2                           15                             41
  CLUS_3                            1                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(XP11.22) MUTATED        2     18      0      0
  DEL PEAK 21(XP11.22) WILD-TYPE     45     52     62     32
D28V3, multiclass
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            2                             45
  CLUS_2                           18                             52
  CLUS_3                            0                             62
  CLUS_4                            0                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP11.22) MUTATED        9     10      1
  DEL PEAK 21(XP11.22) WILD-TYPE     64     62     65
D28V4, multiclass
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            9                             64
  CLUS_2                           10                             62
  CLUS_3                            1                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP11.22) MUTATED        6      4     11
  DEL PEAK 21(XP11.22) WILD-TYPE     68     68     67
D28V5, multiclass
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            6                             68
  CLUS_2                            4                             68
  CLUS_3                           11                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP11.22) MUTATED        9      2     10
  DEL PEAK 21(XP11.22) WILD-TYPE     96     46     61
D28V6, multiclass
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            9                             96
  CLUS_2                            2                             46
  CLUS_3                           10                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(XP11.22) MUTATED        7      4     10
  DEL PEAK 21(XP11.22) WILD-TYPE     67     65     71
D28V7, multiclass
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            7                             67
  CLUS_2                            4                             65
  CLUS_3                           10                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(XP11.22) MUTATED        1      6      3      0      4      2
  DEL PEAK 21(XP11.22) WILD-TYPE     26     28     33     32     31     38
                                vv
clus                             CLUS_7
  DEL PEAK 21(XP11.22) MUTATED        5
  DEL PEAK 21(XP11.22) WILD-TYPE     15
D28V8, multiclass
        clus
vv       DEL PEAK 21(XP11.22) MUTATED DEL PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            6                             28
  CLUS_3                            3                             33
  CLUS_4                            0                             32
  CLUS_5                            4                             31
  CLUS_6                            2                             38
  CLUS_7                            5                             15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 22(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XQ28) MUTATED        0     15      5
  DEL PEAK 22(XQ28) WILD-TYPE     84     92     28
D29V1, multiclass
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         0                          84
  CLUS_2                        15                          92
  CLUS_3                         5                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XQ28) MUTATED        3     12      3
  DEL PEAK 22(XQ28) WILD-TYPE     53     44     93
D29V2, multiclass
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         3                          53
  CLUS_2                        12                          44
  CLUS_3                         3                          93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(XQ28) MUTATED        2     15      2      0
  DEL PEAK 22(XQ28) WILD-TYPE     45     55     60     32
D29V3, multiclass
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         2                          45
  CLUS_2                        15                          55
  CLUS_3                         2                          60
  CLUS_4                         0                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XQ28) MUTATED        7      9      3
  DEL PEAK 22(XQ28) WILD-TYPE     66     63     63
D29V4, multiclass
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         7                          66
  CLUS_2                         9                          63
  CLUS_3                         3                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XQ28) MUTATED        5      5     10
  DEL PEAK 22(XQ28) WILD-TYPE     69     67     68
D29V5, multiclass
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         5                          69
  CLUS_2                         5                          67
  CLUS_3                        10                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XQ28) MUTATED        8      4      8
  DEL PEAK 22(XQ28) WILD-TYPE     97     44     63
D29V6, multiclass
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         8                          97
  CLUS_2                         4                          44
  CLUS_3                         8                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(XQ28) MUTATED        5      5     10
  DEL PEAK 22(XQ28) WILD-TYPE     69     64     71
D29V7, multiclass
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         5                          69
  CLUS_2                         5                          64
  CLUS_3                        10                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 22(XQ28) MUTATED        1      5      2      0      3      4      5
  DEL PEAK 22(XQ28) WILD-TYPE     26     29     34     32     32     36     15
D29V8, multiclass
        clus
vv       DEL PEAK 22(XQ28) MUTATED DEL PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         1                          26
  CLUS_2                         5                          29
  CLUS_3                         2                          34
  CLUS_4                         0                          32
  CLUS_5                         3                          32
  CLUS_6                         4                          36
  CLUS_7                         5                          15
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
