		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	42 (8%)	470	NA	NA	NA	NA	0.00035	0.139	0.00144	0.516	0.24937	1	0.8839	1	0.00143	0.513	0.01458	1	0.82505	1	0.28085	1	0.059209	1	0.36649	1
amp_1q32.1	43 (8%)	469	NA	NA	NA	NA	9.9999e-06	0.0058	9.9999e-06	0.0058	0.16169	1	0.35503	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.55001	1	9.9999e-06	0.0058	0.00102	0.374	9.9999e-06	0.0058
amp_2p24.3	24 (5%)	488	0.61518	1	0.58367	1	0.00072999	0.275	0.04007	1	0.48876	1	1	1	0.02386	1	0.01352	1	0.49463	1	0.04075	1	0.15782	1	0.086079	1
amp_3q26.33	21 (4%)	491	1	1	0.58281	1	9.9999e-06	0.0058	3e-04	0.121	0.14486	1	0.84935	1	0.00069999	0.265	0.00033	0.132	0.00098999	0.365	0.00202	0.705	0.00032	0.128	0.01105	1
amp_4q12	30 (6%)	482	1	1	0.04259	1	5.9999e-05	0.0258	5.9999e-05	0.0258	0.0086899	1	0.28002	1	2e-05	0.00894	2e-05	0.00894	0.00431	1	0.00275	0.929	3e-05	0.0131	0.00063999	0.243
amp_7p11.2	127 (25%)	385	0.76506	1	0.40633	1	9.9999e-06	0.0058	9.9999e-06	0.0058	5e-05	0.0215	0.0127	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00037	0.147	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058
amp_7q31.2	173 (34%)	339	1	1	0.81237	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00447	1	0.1849	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.02955	1	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058
amp_7q32.3	181 (35%)	331	0.69407	1	1	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.0061899	1	0.1671	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.081829	1	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058
amp_8q24.13	100 (20%)	412	0.36948	1	0.23682	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.04168	1	0.48723	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.058499	1	0.00101	0.372	9.9999e-06	0.0058	0.00011	0.0464
amp_9q34.3	45 (9%)	467	0.50991	1	0.88383	1	0.059939	1	0.092809	1	0.20863	1	0.76065	1	0.058319	1	0.01383	1	0.21243	1	0.1807	1	0.27102	1	0.077689	1
amp_10p15.3	70 (14%)	442	0.52598	1	0.085279	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.0293	1	0.13436	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00081999	0.307	0.0099999	1	9.9999e-06	0.0058	9.9999e-06	0.0058
amp_11q24.1	86 (17%)	426	0.069579	1	0.11917	1	0.32371	1	0.01684	1	0.054279	1	0.02927	1	0.070839	1	0.066119	1	0.26083	1	0.0080699	1	0.077449	1	0.01634	1
amp_12p13.32	71 (14%)	441	0.86408	1	0.097809	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.11765	1	0.19086	1	0.00016	0.0664	2e-05	0.00894	0.00478	1	0.00119	0.431	0.00048	0.188	0.00014	0.0585
amp_12q14.1	37 (7%)	475	NA	NA	NA	NA	9.9999e-06	0.0058	9.9999e-06	0.0058	0.01557	1	0.73282	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00269	0.912	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058
amp_13q34	22 (4%)	490	NA	NA	NA	NA	0.00096999	0.359	0.00093999	0.349	0.1864	1	0.71606	1	0.04356	1	0.0090999	1	0.32447	1	0.03605	1	0.24369	1	0.13758	1
amp_15q26.3	19 (4%)	493	1	1	0.04389	1	4e-05	0.0174	0.00045	0.177	0.22288	1	0.60639	1	0.04247	1	0.0095799	1	0.20592	1	0.1491	1	0.02385	1	0.37587	1
amp_17q25.1	44 (9%)	468	NA	NA	NA	NA	0.054849	1	0.25727	1	0.3319	1	0.43818	1	0.059509	1	0.071559	1	0.17618	1	0.67493	1	0.6737	1	0.18305	1
amp_19p13.3	128 (25%)	384	0.075829	1	0.15013	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.88431	1	0.57435	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00456	1	0.00308	1	9.9999e-06	0.0058	5.9999e-05	0.0258
amp_19p13.2	122 (24%)	390	0.074749	1	0.15086	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.27517	1	0.20258	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.0097399	1	0.0050699	1	9.9999e-06	0.0058	9.9999e-06	0.0058
amp_xp11.22	47 (9%)	465	0.64982	1	1	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.31848	1	0.73234	1	0.0018	0.632	6.9999e-05	0.0297	0.04495	1	0.13348	1	0.051299	1	0.00026	0.105
amp_xp11.22	62 (12%)	450	0.65206	1	1	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.0268	1	0.38808	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00034	0.136	0.00405	1	0.00013	0.0546	2e-05	0.00894
del_1p36.32	206 (40%)	306	0.00055999	0.216	0.00018	0.0743	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00073999	0.277	0.84605	1	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058
del_1p32.3	196 (38%)	316	0.02838	1	0.00019	0.0783	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00055999	0.216	0.61524	1	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058
del_1q43	31 (6%)	481	NA	NA	NA	NA	0.0019	0.665	0.0071699	1	0.10088	1	0.53809	1	0.02731	1	0.01425	1	0.18823	1	0.58565	1	0.04385	1	0.10984	1
del_2q37.3	77 (15%)	435	0.37058	1	0.01276	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00466	1	0.02003	1	0.00019	0.0783	0.00012	0.0505	0.04078	1	0.0087199	1	0.02057	1	9.9999e-06	0.0058
del_3p21.31	48 (9%)	464	1	1	0.0066999	1	9.9999e-06	0.0058	0.00357	1	0.0023	0.791	0.26048	1	0.02091	1	0.00442	1	0.0077399	1	0.0042	1	0.0215	1	0.00177	0.623
del_3q29	47 (9%)	465	0.17512	1	0.88315	1	9.9999e-06	0.0058	0.00044	0.174	0.40824	1	0.92147	1	0.00408	1	0.00104	0.381	0.2738	1	0.01402	1	0.0077799	1	0.0053099	1
del_4q34.3	137 (27%)	375	1	1	0.35432	1	0.00056999	0.218	9.9999e-06	0.0058	0.16383	1	0.22638	1	0.060279	1	0.075139	1	0.01309	1	0.00439	1	0.28901	1	0.00072999	0.275
del_5p15.33	50 (10%)	462	1	1	0.067749	1	9.9999e-06	0.0058	2e-05	0.00894	0.86464	1	0.57942	1	0.0050299	1	0.00082999	0.31	0.003	1	0.23437	1	0.01934	1	0.057919	1
del_5q34	64 (12%)	448	0.44691	1	0.23517	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.16186	1	1	1	0.00024	0.0977	5.9999e-05	0.0258	3e-05	0.0131	0.0107	1	0.00062999	0.24	0.00228	0.787
del_6p25.3	50 (10%)	462	NA	NA	NA	NA	2e-05	0.00894	0.11708	1	0.23571	1	0.9261	1	0.072049	1	0.11344	1	0.46457	1	0.17743	1	0.092729	1	0.01007	1
del_6q22.31	78 (15%)	434	0.61415	1	0.58225	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.11411	1	0.50662	1	0.00464	1	0.00046	0.181	0.00141	0.508	0.00226	0.782	0.0094799	1	0.00048	0.188
del_6q24.3	82 (16%)	430	0.16638	1	0.27928	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.099659	1	0.61865	1	0.00146	0.521	0.00013	0.0546	2e-04	0.0816	0.00239	0.817	0.00019	0.0783	0.00029	0.117
del_7p22.3	21 (4%)	491	NA	NA	NA	NA	0.01747	1	0.0059999	1	0.25287	1	0.35238	1	0.35188	1	0.38162	1	0.79569	1	0.10225	1	0.60502	1	0.050999	1
del_8q24.3	28 (5%)	484	NA	NA	NA	NA	9.9999e-06	0.0058	2e-05	0.00894	0.92616	1	0.4596	1	0.00112	0.407	0.00051999	0.202	0.01016	1	0.02655	1	0.10072	1	0.00123	0.444
del_9p23	150 (29%)	362	0.44905	1	0.65676	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.03889	1	0.00263	0.894	0.01234	1	0.01974	1	0.93441	1	0.03686	1	0.33785	1	0.02729	1
del_9p21.3	176 (34%)	336	0.33489	1	0.064159	1	9.9999e-06	0.0058	9.9999e-06	0.0058	4e-05	0.0174	2e-05	0.00894	9.9999e-06	0.0058	9.9999e-06	0.0058	0.315	1	9.9999e-06	0.0058	0.00055999	0.216	9.9999e-06	0.0058
del_10q26.3	151 (29%)	361	0.083649	1	0.70611	1	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00028	0.113	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058
del_11p15.5	103 (20%)	409	0.64303	1	0.00050999	0.199	9.9999e-06	0.0058	9.9999e-06	0.0058	0.14811	1	0.63179	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.0011	0.401	0.00051999	0.202	0.01244	1	0.00249	0.849
del_12p13.1	39 (8%)	473	NA	NA	NA	NA	0.00111	0.404	0.00398	1	0.19265	1	0.95543	1	0.0095799	1	0.02121	1	0.01799	1	0.10888	1	0.01483	1	0.084129	1
del_12q12	68 (13%)	444	1	1	0.58055	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.64697	1	0.14888	1	0.01163	1	0.0078699	1	0.0083699	1	0.79716	1	0.14068	1	0.47606	1
del_13q14.2	141 (28%)	371	0.18128	1	4e-05	0.0174	9.9999e-06	0.0058	0.00059999	0.229	0.03358	1	0.60834	1	0.00024	0.0977	5.9999e-05	0.0258	0.02091	1	0.02456	1	0.058149	1	0.02863	1
del_13q14.2	143 (28%)	369	0.18056	1	5.9999e-05	0.0258	9.9999e-06	0.0058	4e-04	0.158	0.03251	1	0.71307	1	0.00015	0.0624	3e-05	0.0131	0.01987	1	0.01442	1	0.04352	1	0.01686	1
del_13q34	109 (21%)	403	0.50664	1	0.14998	1	9.9999e-06	0.0058	0.069129	1	0.082979	1	0.75704	1	0.0081799	1	0.00154	0.547	0.071489	1	0.091019	1	0.01877	1	0.077369	1
del_14q24.3	121 (24%)	391	0.30337	1	0.098309	1	0.00237	0.813	0.0361	1	0.00158	0.559	0.03603	1	0.00052999	0.205	8.9999e-05	0.0381	0.00014	0.0585	0.01188	1	0.00283	0.954	0.0021	0.729
del_15q21.3	66 (13%)	446	0.84141	1	0.49306	1	0.95633	1	0.01233	1	0.01779	1	0.005	1	4e-05	0.0174	0.00091999	0.342	0.54209	1	0.78479	1	0.01458	1	0.30346	1
del_18q23	78 (15%)	434	0.31993	1	0.32863	1	0.70305	1	0.0056999	1	0.45898	1	0.075079	1	0.41004	1	0.081139	1	0.2642	1	0.39123	1	0.60691	1	0.54521	1
del_19q13.42	278 (54%)	234	0.03626	1	0.02076	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00207	0.72	0.57485	1	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058	9.9999e-06	0.0058
del_22q13.31	77 (15%)	435	0.24832	1	0.04279	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.00019	0.0783	0.01228	1	9.9999e-06	0.0058	9.9999e-06	0.0058	0.061089	1	0.00016	0.0664	0.00153	0.545	2e-05	0.00894
del_xq21.1	78 (15%)	434	0.83898	1	0.26823	1	0.22773	1	0.01356	1	0.052309	1	0.15188	1	0.0082799	1	0.00068999	0.262	0.0058699	1	0.0061799	1	0.00173	0.611	0.0069599	1
