[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oTLGG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/10668119/LGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/10013777/transformed.cor.cli.txt"

nPatients in clinical file=516, in cluster file=512, common to both=512
[1]  50 512
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         42                         470 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         42                         470 
[1] "AMP PEAK  2(1Q32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           43                           469 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           43                           469 
[1] "AMP PEAK  3(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           24                           488 
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           24                           488 
[1] "AMP PEAK  4(3Q26.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                            21                            491 
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                            21                            491 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         30                         482 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         30                         482 
[1] "AMP PEAK  6(7P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          127                           385 
  AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE 
                          127                           385 
[1] "AMP PEAK  7(7Q31.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          173                           339 
  AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE 
                          173                           339 
[1] "AMP PEAK  8(7Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE 
                          181                           331 
  AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE 
                          181                           331 
[1] "AMP PEAK  9(8Q24.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE 
                           100                            412 
  AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE 
                           100                            412 
[1] "AMP PEAK 10(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE 
                           45                           467 
  AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE 
                           45                           467 
[1] "AMP PEAK 11(10P15.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE 
                            70                            442 
  AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE 
                            70                            442 
[1] "AMP PEAK 12(11Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE 
                            86                            426 
  AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE 
                            86                            426 
[1] "AMP PEAK 13(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                             71                             441 
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                             71                             441 
[1] "AMP PEAK 14(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            37                            475 
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                            37                            475 
[1] "AMP PEAK 15(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          22                          490 
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                          22                          490 
[1] "AMP PEAK 16(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            19                            493 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            19                            493 
[1] "AMP PEAK 17(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                            44                            468 
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                            44                            468 
[1] "AMP PEAK 18(19P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE 
                           128                            384 
  AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE 
                           128                            384 
[1] "AMP PEAK 19(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE 
                           122                            390 
  AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE 
                           122                            390 
[1] "AMP PEAK 20(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE 
                            47                            465 
  AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE 
                            47                            465 
[1] "AMP PEAK 21(XP11.22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE 
                            62                            450 
  AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE 
                            62                            450 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           206                            306 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                           206                            306 
[1] "DEL PEAK  2(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                          196                           316 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                          196                           316 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         31                         481 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         31                         481 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           77                           435 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           77                           435 
[1] "DEL PEAK  5(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                            48                            464 
  DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE 
                            48                            464 
[1] "DEL PEAK  6(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE 
                         47                         465 
  DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE 
                         47                         465 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                          137                           375 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                          137                           375 
[1] "DEL PEAK  8(5P15.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE 
                            50                            462 
  DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE 
                            50                            462 
[1] "DEL PEAK  9(5Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE 
                         64                         448 
  DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE 
                         64                         448 
[1] "DEL PEAK 10(6P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                           50                           462 
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                           50                           462 
[1] "DEL PEAK 11(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE 
                            78                            434 
  DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE 
                            78                            434 
[1] "DEL PEAK 12(6Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE 
                           82                           430 
  DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE 
                           82                           430 
[1] "DEL PEAK 13(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE 
                           21                           491 
  DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE 
                           21                           491 
[1] "DEL PEAK 14(8Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE 
                           28                           484 
  DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE 
                           28                           484 
[1] "DEL PEAK 15(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                        150                         362 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                        150                         362 
[1] "DEL PEAK 16(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          176                           336 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          176                           336 
[1] "DEL PEAK 17(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE 
                           151                            361 
  DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE 
                           151                            361 
[1] "DEL PEAK 18(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                           103                            409 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                           103                            409 
[1] "DEL PEAK 19(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE 
                            39                            473 
  DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE 
                            39                            473 
[1] "DEL PEAK 20(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE 
                          68                          444 
  DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE 
                          68                          444 
[1] "DEL PEAK 21(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           141                            371 
  DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE 
                           141                            371 
[1] "DEL PEAK 22(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                           143                            369 
  DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE 
                           143                            369 
[1] "DEL PEAK 23(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE 
                         109                          403 
  DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE 
                         109                          403 
[1] "DEL PEAK 24(14Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE 
                           121                            391 
  DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE 
                           121                            391 
[1] "DEL PEAK 25(15Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE 
                            66                            446 
  DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE 
                            66                            446 
[1] "DEL PEAK 26(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE 
                          78                          434 
  DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE 
                          78                          434 
[1] "DEL PEAK 27(19Q13.42) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE 
                            278                             234 
  DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE 
                            278                             234 
[1] "DEL PEAK 28(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                             77                             435 
  DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE 
                             77                             435 
[1] "DEL PEAK 29(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE 
                           78                           434 
  DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE 
                           78                           434 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 512 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 512 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        1      1      0
  AMP PEAK  1(1Q22) WILD-TYPE      8      9      8
D1V1, multiclass
[1] "Remove cluster labels:"    "AMP PEAK  1(1Q22) MUTATED"
clus
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5311                  TCGA-E1-5318 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5322 
"AMP PEAK  1(1Q22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        1      1      0      0
  AMP PEAK  1(1Q22) WILD-TYPE      6      6      7      6
D1V2, multiclass
[1] "Remove cluster labels:"    "AMP PEAK  1(1Q22) MUTATED"
clus
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5311                  TCGA-E1-5318 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-E1-5322 
"AMP PEAK  1(1Q22) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED       18     17      7
  AMP PEAK  1(1Q22) WILD-TYPE    150    101    219
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        18                         150
  CLUS_2                        17                         101
  CLUS_3                         7                         219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       19     14      1      8
  AMP PEAK  1(1Q22) WILD-TYPE    204     58     56    147
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        19                         204
  CLUS_2                        14                          58
  CLUS_3                         1                          56
  CLUS_4                         8                         147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED        4     10      4      6
  AMP PEAK  1(1Q22) WILD-TYPE     48     52     64     68
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         4                          48
  CLUS_2                        10                          52
  CLUS_3                         4                          64
  CLUS_4                         6                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q22) MUTATED        5     13      6
  AMP PEAK  1(1Q22) WILD-TYPE     62    118     52
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         5                          62
  CLUS_2                        13                         118
  CLUS_3                         6                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q22) MUTATED        8     20      3      9      2
  AMP PEAK  1(1Q22) WILD-TYPE    127     92    105    118     26
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         8                         127
  CLUS_2                        20                          92
  CLUS_3                         3                         105
  CLUS_4                         9                         118
  CLUS_5                         2                          26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       10     18      7      7
  AMP PEAK  1(1Q22) WILD-TYPE    125     95    118    130
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        10                         125
  CLUS_2                        18                          95
  CLUS_3                         7                         118
  CLUS_4                         7                         130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       13      9     13      5
  AMP PEAK  1(1Q22) WILD-TYPE    123     95    174     67
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        13                         123
  CLUS_2                         9                          95
  CLUS_3                        13                         174
  CLUS_4                         5                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       11      7      9     13
  AMP PEAK  1(1Q22) WILD-TYPE    144    100    128     87
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        11                         144
  CLUS_2                         7                         100
  CLUS_3                         9                         128
  CLUS_4                        13                          87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  1(1Q22) MUTATED        7     12      2     10      4      4      1
  AMP PEAK  1(1Q22) WILD-TYPE    106     82     67    136     30     14     24
D1V11, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                         7                         106
  CLUS_2                        12                          82
  CLUS_3                         2                          67
  CLUS_4                        10                         136
  CLUS_5                         4                          30
  CLUS_6                         4                          14
  CLUS_7                         1                          24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1Q22) MUTATED       12      9      7     12
  AMP PEAK  1(1Q22) WILD-TYPE    136    132    105     86
D1V12, multiclass
        clus
vv       AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE
  CLUS_1                        12                         136
  CLUS_2                         9                         132
  CLUS_3                         7                         105
  CLUS_4                        12                          86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        0      0      2
  AMP PEAK  2(1Q32.1) WILD-TYPE      9     10      6
D2V1, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  2(1Q32.1) MUTATED"
clus
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5396 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5270                    TCGA-DB-5273 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5274                    TCGA-DB-5275 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5276                    TCGA-DB-5278 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DB-5281 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5140                    TCGA-DH-5141 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5322 
"AMP PEAK  2(1Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        1      1      0      0
  AMP PEAK  2(1Q32.1) WILD-TYPE      6      6      7      6
D2V2, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  2(1Q32.1) MUTATED"
clus
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5396 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5270                    TCGA-DB-5273 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5274                    TCGA-DB-5275 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5276                    TCGA-DB-5278 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DB-5281 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5140                    TCGA-DH-5141 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"AMP PEAK  2(1Q32.1) WILD-TYPE" "AMP PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E1-5322 
"AMP PEAK  2(1Q32.1) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED       10     27      6
  AMP PEAK  2(1Q32.1) WILD-TYPE    158     91    220
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          10                           158
  CLUS_2                          27                            91
  CLUS_3                           6                           220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       12     22      3      6
  AMP PEAK  2(1Q32.1) WILD-TYPE    211     50     54    149
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          12                           211
  CLUS_2                          22                            50
  CLUS_3                           3                            54
  CLUS_4                           6                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        4      8      2      8
  AMP PEAK  2(1Q32.1) WILD-TYPE     48     54     66     66
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                           8                            54
  CLUS_3                           2                            66
  CLUS_4                           8                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q32.1) MUTATED        3     12      7
  AMP PEAK  2(1Q32.1) WILD-TYPE     64    119     51
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            64
  CLUS_2                          12                           119
  CLUS_3                           7                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q32.1) MUTATED        2     26      1     12      2
  AMP PEAK  2(1Q32.1) WILD-TYPE    133     86    107    115     26
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           2                           133
  CLUS_2                          26                            86
  CLUS_3                           1                           107
  CLUS_4                          12                           115
  CLUS_5                           2                            26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        3     24      5     11
  AMP PEAK  2(1Q32.1) WILD-TYPE    132     89    120    126
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                          24                            89
  CLUS_3                           5                           120
  CLUS_4                          11                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED       15      7     16      4
  AMP PEAK  2(1Q32.1) WILD-TYPE    121     97    171     68
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          15                           121
  CLUS_2                           7                            97
  CLUS_3                          16                           171
  CLUS_4                           4                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        6      4      9     23
  AMP PEAK  2(1Q32.1) WILD-TYPE    149    103    128     77
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           6                           149
  CLUS_2                           4                           103
  CLUS_3                           9                           128
  CLUS_4                          23                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q32.1) MUTATED        3     16      1     14      3      3
  AMP PEAK  2(1Q32.1) WILD-TYPE    110     78     68    132     31     15
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q32.1) MUTATED        2
  AMP PEAK  2(1Q32.1) WILD-TYPE     23
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                           110
  CLUS_2                          16                            78
  CLUS_3                           1                            68
  CLUS_4                          14                           132
  CLUS_5                           3                            31
  CLUS_6                           3                            15
  CLUS_7                           2                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q32.1) MUTATED        6      5      8     23
  AMP PEAK  2(1Q32.1) WILD-TYPE    142    136    104     75
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           6                           142
  CLUS_2                           5                           136
  CLUS_3                           8                           104
  CLUS_4                          23                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        0      2      1
  AMP PEAK  3(2P24.3) WILD-TYPE      9      8      7
D3V1, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                           2                             8
  CLUS_3                           1                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        0      2      1      0
  AMP PEAK  3(2P24.3) WILD-TYPE      7      5      6      6
D3V2, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           2                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        9     12      3
  AMP PEAK  3(2P24.3) WILD-TYPE    159    106    223
D3V3, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           9                           159
  CLUS_2                          12                           106
  CLUS_3                           3                           223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED       11      8      1      4
  AMP PEAK  3(2P24.3) WILD-TYPE    212     64     56    151
D3V4, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          11                           212
  CLUS_2                           8                            64
  CLUS_3                           1                            56
  CLUS_4                           4                           151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        2      4      1      2
  AMP PEAK  3(2P24.3) WILD-TYPE     50     58     67     72
D3V5, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           2                            50
  CLUS_2                           4                            58
  CLUS_3                           1                            67
  CLUS_4                           2                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(2P24.3) MUTATED        2      5      2
  AMP PEAK  3(2P24.3) WILD-TYPE     65    126     56
D3V6, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           2                            65
  CLUS_2                           5                           126
  CLUS_3                           2                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(2P24.3) MUTATED        4     12      2      6      0
  AMP PEAK  3(2P24.3) WILD-TYPE    131    100    106    121     28
D3V7, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           4                           131
  CLUS_2                          12                           100
  CLUS_3                           2                           106
  CLUS_4                           6                           121
  CLUS_5                           0                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        3     12      3      6
  AMP PEAK  3(2P24.3) WILD-TYPE    132    101    122    131
D3V8, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                          12                           101
  CLUS_3                           3                           122
  CLUS_4                           6                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        6      8      8      2
  AMP PEAK  3(2P24.3) WILD-TYPE    130     96    179     70
D3V9, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           6                           130
  CLUS_2                           8                            96
  CLUS_3                           8                           179
  CLUS_4                           2                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        8      2      4     10
  AMP PEAK  3(2P24.3) WILD-TYPE    147    105    133     90
D3V10, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           8                           147
  CLUS_2                           2                           105
  CLUS_3                           4                           133
  CLUS_4                          10                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(2P24.3) MUTATED        4     10      2      7      0      1
  AMP PEAK  3(2P24.3) WILD-TYPE    109     84     67    139     34     17
                               vv
clus                            CLUS_7
  AMP PEAK  3(2P24.3) MUTATED        0
  AMP PEAK  3(2P24.3) WILD-TYPE     25
D3V11, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           4                           109
  CLUS_2                          10                            84
  CLUS_3                           2                            67
  CLUS_4                           7                           139
  CLUS_5                           0                            34
  CLUS_6                           1                            17
  CLUS_7                           0                            25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(2P24.3) MUTATED        8      5      2      9
  AMP PEAK  3(2P24.3) WILD-TYPE    140    136    110     89
D3V12, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           8                           140
  CLUS_2                           5                           136
  CLUS_3                           2                           110
  CLUS_4                           9                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3Q26.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        1      1      1
  AMP PEAK  4(3Q26.33) WILD-TYPE      8      9      7
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        2      1      0      0
  AMP PEAK  4(3Q26.33) WILD-TYPE      5      6      7      6
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        5     14      2
  AMP PEAK  4(3Q26.33) WILD-TYPE    163    104    224
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            5                            163
  CLUS_2                           14                            104
  CLUS_3                            2                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        9     10      0      2
  AMP PEAK  4(3Q26.33) WILD-TYPE    214     62     57    153
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            9                            214
  CLUS_2                           10                             62
  CLUS_3                            0                             57
  CLUS_4                            2                            153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        2      6      1      2
  AMP PEAK  4(3Q26.33) WILD-TYPE     50     56     67     72
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                             50
  CLUS_2                            6                             56
  CLUS_3                            1                             67
  CLUS_4                            2                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3Q26.33) MUTATED        2      6      3
  AMP PEAK  4(3Q26.33) WILD-TYPE     65    125     55
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            2                             65
  CLUS_2                            6                            125
  CLUS_3                            3                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3Q26.33) MUTATED        5     13      2      1      0
  AMP PEAK  4(3Q26.33) WILD-TYPE    130     99    106    126     28
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            5                            130
  CLUS_2                           13                             99
  CLUS_3                            2                            106
  CLUS_4                            1                            126
  CLUS_5                            0                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        4     13      1      3
  AMP PEAK  4(3Q26.33) WILD-TYPE    131    100    124    134
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            4                            131
  CLUS_2                           13                            100
  CLUS_3                            1                            124
  CLUS_4                            3                            134
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED       10      8      1      2
  AMP PEAK  4(3Q26.33) WILD-TYPE    126     96    186     70
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           10                            126
  CLUS_2                            8                             96
  CLUS_3                            1                            186
  CLUS_4                            2                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        8      4      0      9
  AMP PEAK  4(3Q26.33) WILD-TYPE    147    103    137     91
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            8                            147
  CLUS_2                            4                            103
  CLUS_3                            0                            137
  CLUS_4                            9                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(3Q26.33) MUTATED        6     11      0      1      1      2
  AMP PEAK  4(3Q26.33) WILD-TYPE    107     83     69    145     33     16
                                vv
clus                             CLUS_7
  AMP PEAK  4(3Q26.33) MUTATED        0
  AMP PEAK  4(3Q26.33) WILD-TYPE     25
D4V11, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            6                            107
  CLUS_2                           11                             83
  CLUS_3                            0                             69
  CLUS_4                            1                            145
  CLUS_5                            1                             33
  CLUS_6                            2                             16
  CLUS_7                            0                             25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3Q26.33) MUTATED        8      3      1      9
  AMP PEAK  4(3Q26.33) WILD-TYPE    140    138    111     89
D4V12, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            8                            140
  CLUS_2                            3                            138
  CLUS_3                            1                            111
  CLUS_4                            9                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        1      1      1
  AMP PEAK  5(4Q12) WILD-TYPE      8      9      7
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         1                           9
  CLUS_3                         1                           7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        0      3      0      0
  AMP PEAK  5(4Q12) WILD-TYPE      7      4      7      6
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         0                           7
  CLUS_2                         3                           4
  CLUS_3                         0                           7
  CLUS_4                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       19      8      3
  AMP PEAK  5(4Q12) WILD-TYPE    149    110    223
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        19                         149
  CLUS_2                         8                         110
  CLUS_3                         3                         223
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       19      9      1      1
  AMP PEAK  5(4Q12) WILD-TYPE    204     63     56    154
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        19                         204
  CLUS_2                         9                          63
  CLUS_3                         1                          56
  CLUS_4                         1                         154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        2      8      0      5
  AMP PEAK  5(4Q12) WILD-TYPE     50     54     68     69
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         2                          50
  CLUS_2                         8                          54
  CLUS_3                         0                          68
  CLUS_4                         5                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED        3      6      6
  AMP PEAK  5(4Q12) WILD-TYPE     64    125     52
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          64
  CLUS_2                         6                         125
  CLUS_3                         6                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED        5     18      0      6      1
  AMP PEAK  5(4Q12) WILD-TYPE    130     94    108    121     27
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                         130
  CLUS_2                        18                          94
  CLUS_3                         0                         108
  CLUS_4                         6                         121
  CLUS_5                         1                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        5     19      0      6
  AMP PEAK  5(4Q12) WILD-TYPE    130     94    125    131
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                         130
  CLUS_2                        19                          94
  CLUS_3                         0                         125
  CLUS_4                         6                         131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        5     14      9      1
  AMP PEAK  5(4Q12) WILD-TYPE    131     90    178     71
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         5                         131
  CLUS_2                        14                          90
  CLUS_3                         9                         178
  CLUS_4                         1                          71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        7      2      6     14
  AMP PEAK  5(4Q12) WILD-TYPE    148    105    131     86
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         7                         148
  CLUS_2                         2                         105
  CLUS_3                         6                         131
  CLUS_4                        14                          86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK  5(4Q12) MUTATED        4      8      1      6      0      7      3
  AMP PEAK  5(4Q12) WILD-TYPE    109     86     68    140     34     11     22
D5V11, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                         109
  CLUS_2                         8                          86
  CLUS_3                         1                          68
  CLUS_4                         6                         140
  CLUS_5                         0                          34
  CLUS_6                         7                          11
  CLUS_7                         3                          22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        8      2      5     14
  AMP PEAK  5(4Q12) WILD-TYPE    140    139    107     84
D5V12, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         8                         140
  CLUS_2                         2                         139
  CLUS_3                         5                         107
  CLUS_4                        14                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED        3      2      3
  AMP PEAK  6(7P11.2) WILD-TYPE      6      8      5
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           2                             8
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED        2      4      1      1
  AMP PEAK  6(7P11.2) WILD-TYPE      5      3      6      5
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           4                             3
  CLUS_3                           1                             6
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       22     97      8
  AMP PEAK  6(7P11.2) WILD-TYPE    146     21    218
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          22                           146
  CLUS_2                          97                            21
  CLUS_3                           8                           218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       38     59     14     14
  AMP PEAK  6(7P11.2) WILD-TYPE    185     13     43    141
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          38                           185
  CLUS_2                          59                            13
  CLUS_3                          14                            43
  CLUS_4                          14                           141
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       13     31     12     12
  AMP PEAK  6(7P11.2) WILD-TYPE     39     31     56     62
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          13                            39
  CLUS_2                          31                            31
  CLUS_3                          12                            56
  CLUS_4                          12                            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P11.2) MUTATED       14     45      9
  AMP PEAK  6(7P11.2) WILD-TYPE     53     86     49
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          14                            53
  CLUS_2                          45                            86
  CLUS_3                           9                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7P11.2) MUTATED       22     66      9     23      5
  AMP PEAK  6(7P11.2) WILD-TYPE    113     46     99    104     23
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          22                           113
  CLUS_2                          66                            46
  CLUS_3                           9                            99
  CLUS_4                          23                           104
  CLUS_5                           5                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       19     65     10     31
  AMP PEAK  6(7P11.2) WILD-TYPE    116     48    115    106
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          19                           116
  CLUS_2                          65                            48
  CLUS_3                          10                           115
  CLUS_4                          31                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       45     36     32     12
  AMP PEAK  6(7P11.2) WILD-TYPE     91     68    155     60
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          45                            91
  CLUS_2                          36                            68
  CLUS_3                          32                           155
  CLUS_4                          12                            60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       30     15     18     62
  AMP PEAK  6(7P11.2) WILD-TYPE    125     92    119     38
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          30                           125
  CLUS_2                          15                            92
  CLUS_3                          18                           119
  CLUS_4                          62                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(7P11.2) MUTATED       21     54      5     27      8      6
  AMP PEAK  6(7P11.2) WILD-TYPE     92     40     64    119     26     12
                               vv
clus                            CLUS_7
  AMP PEAK  6(7P11.2) MUTATED        4
  AMP PEAK  6(7P11.2) WILD-TYPE     21
D6V11, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          21                            92
  CLUS_2                          54                            40
  CLUS_3                           5                            64
  CLUS_4                          27                           119
  CLUS_5                           8                            26
  CLUS_6                           6                            12
  CLUS_7                           4                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(7P11.2) MUTATED       27     22     14     62
  AMP PEAK  6(7P11.2) WILD-TYPE    121    119     98     36
D6V12, multiclass
        clus
vv       AMP PEAK  6(7P11.2) MUTATED AMP PEAK  6(7P11.2) WILD-TYPE
  CLUS_1                          27                           121
  CLUS_2                          22                           119
  CLUS_3                          14                            98
  CLUS_4                          62                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED        3      3      3
  AMP PEAK  7(7Q31.2) WILD-TYPE      6      7      5
D7V1, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             7
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED        3      3      2      1
  AMP PEAK  7(7Q31.2) WILD-TYPE      4      4      5      5
D7V2, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           3                             4
  CLUS_3                           2                             5
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       49    103     21
  AMP PEAK  7(7Q31.2) WILD-TYPE    119     15    205
D7V3, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          49                           119
  CLUS_2                         103                            15
  CLUS_3                          21                           205
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       75     55     13     28
  AMP PEAK  7(7Q31.2) WILD-TYPE    148     17     44    127
D7V4, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          75                           148
  CLUS_2                          55                            17
  CLUS_3                          13                            44
  CLUS_4                          28                           127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       19     33     17     21
  AMP PEAK  7(7Q31.2) WILD-TYPE     33     29     51     53
D7V5, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          19                            33
  CLUS_2                          33                            29
  CLUS_3                          17                            51
  CLUS_4                          21                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.2) MUTATED       23     52     15
  AMP PEAK  7(7Q31.2) WILD-TYPE     44     79     43
D7V6, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          23                            44
  CLUS_2                          52                            79
  CLUS_3                          15                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7Q31.2) MUTATED       48     63     15     37      8
  AMP PEAK  7(7Q31.2) WILD-TYPE     87     49     93     90     20
D7V7, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          48                            87
  CLUS_2                          63                            49
  CLUS_3                          15                            93
  CLUS_4                          37                            90
  CLUS_5                           8                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       44     61     20     46
  AMP PEAK  7(7Q31.2) WILD-TYPE     91     52    105     91
D7V8, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          44                            91
  CLUS_2                          61                            52
  CLUS_3                          20                           105
  CLUS_4                          46                            91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       56     42     54     19
  AMP PEAK  7(7Q31.2) WILD-TYPE     80     62    133     53
D7V9, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          56                            80
  CLUS_2                          42                            62
  CLUS_3                          54                           133
  CLUS_4                          19                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       53     28     30     60
  AMP PEAK  7(7Q31.2) WILD-TYPE    102     79    107     40
D7V10, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          53                           102
  CLUS_2                          28                            79
  CLUS_3                          30                           107
  CLUS_4                          60                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q31.2) MUTATED       40     52     10     43     15      6
  AMP PEAK  7(7Q31.2) WILD-TYPE     73     42     59    103     19     12
                               vv
clus                            CLUS_7
  AMP PEAK  7(7Q31.2) MUTATED        5
  AMP PEAK  7(7Q31.2) WILD-TYPE     20
D7V11, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          40                            73
  CLUS_2                          52                            42
  CLUS_3                          10                            59
  CLUS_4                          43                           103
  CLUS_5                          15                            19
  CLUS_6                           6                            12
  CLUS_7                           5                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.2) MUTATED       48     37     26     60
  AMP PEAK  7(7Q31.2) WILD-TYPE    100    104     86     38
D7V12, multiclass
        clus
vv       AMP PEAK  7(7Q31.2) MUTATED AMP PEAK  7(7Q31.2) WILD-TYPE
  CLUS_1                          48                           100
  CLUS_2                          37                           104
  CLUS_3                          26                            86
  CLUS_4                          60                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(7Q32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED        3      3      4
  AMP PEAK  8(7Q32.3) WILD-TYPE      6      7      4
D8V1, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           3                             7
  CLUS_3                           4                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED        3      3      2      2
  AMP PEAK  8(7Q32.3) WILD-TYPE      4      4      5      4
D8V2, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           3                             4
  CLUS_3                           2                             5
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       51    107     23
  AMP PEAK  8(7Q32.3) WILD-TYPE    117     11    203
D8V3, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          51                           117
  CLUS_2                         107                            11
  CLUS_3                          23                           203
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       80     56     14     29
  AMP PEAK  8(7Q32.3) WILD-TYPE    143     16     43    126
D8V4, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          80                           143
  CLUS_2                          56                            16
  CLUS_3                          14                            43
  CLUS_4                          29                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       20     34     19     22
  AMP PEAK  8(7Q32.3) WILD-TYPE     32     28     49     52
D8V5, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          20                            32
  CLUS_2                          34                            28
  CLUS_3                          19                            49
  CLUS_4                          22                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(7Q32.3) MUTATED       24     55     16
  AMP PEAK  8(7Q32.3) WILD-TYPE     43     76     42
D8V6, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                          55                            76
  CLUS_3                          16                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(7Q32.3) MUTATED       52     63     16     40      8
  AMP PEAK  8(7Q32.3) WILD-TYPE     83     49     92     87     20
D8V7, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          52                            83
  CLUS_2                          63                            49
  CLUS_3                          16                            92
  CLUS_4                          40                            87
  CLUS_5                           8                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       47     61     21     50
  AMP PEAK  8(7Q32.3) WILD-TYPE     88     52    104     87
D8V8, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          47                            88
  CLUS_2                          61                            52
  CLUS_3                          21                           104
  CLUS_4                          50                            87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       57     43     57     22
  AMP PEAK  8(7Q32.3) WILD-TYPE     79     61    130     50
D8V9, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          57                            79
  CLUS_2                          43                            61
  CLUS_3                          57                           130
  CLUS_4                          22                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       55     30     33     61
  AMP PEAK  8(7Q32.3) WILD-TYPE    100     77    104     39
D8V10, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          55                           100
  CLUS_2                          30                            77
  CLUS_3                          33                           104
  CLUS_4                          61                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(7Q32.3) MUTATED       44     52     11     46     15      6
  AMP PEAK  8(7Q32.3) WILD-TYPE     69     42     58    100     19     12
                               vv
clus                            CLUS_7
  AMP PEAK  8(7Q32.3) MUTATED        5
  AMP PEAK  8(7Q32.3) WILD-TYPE     20
D8V11, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          44                            69
  CLUS_2                          52                            42
  CLUS_3                          11                            58
  CLUS_4                          46                           100
  CLUS_5                          15                            19
  CLUS_6                           6                            12
  CLUS_7                           5                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(7Q32.3) MUTATED       53     38     28     60
  AMP PEAK  8(7Q32.3) WILD-TYPE     95    103     84     38
D8V12, multiclass
        clus
vv       AMP PEAK  8(7Q32.3) MUTATED AMP PEAK  8(7Q32.3) WILD-TYPE
  CLUS_1                          53                            95
  CLUS_2                          38                           103
  CLUS_3                          28                            84
  CLUS_4                          60                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(8Q24.13) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED        2      1      3
  AMP PEAK  9(8Q24.13) WILD-TYPE      7      9      5
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              9
  CLUS_3                            3                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED        1      3      0      2
  AMP PEAK  9(8Q24.13) WILD-TYPE      6      4      7      4
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            3                              4
  CLUS_3                            0                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       74     15     11
  AMP PEAK  9(8Q24.13) WILD-TYPE     94    103    215
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           74                             94
  CLUS_2                           15                            103
  CLUS_3                           11                            215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       82      3      5     10
  AMP PEAK  9(8Q24.13) WILD-TYPE    141     69     52    145
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           82                            141
  CLUS_2                            3                             69
  CLUS_3                            5                             52
  CLUS_4                           10                            145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       14     13     19      8
  AMP PEAK  9(8Q24.13) WILD-TYPE     38     49     49     66
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           14                             38
  CLUS_2                           13                             49
  CLUS_3                           19                             49
  CLUS_4                            8                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(8Q24.13) MUTATED       16     29      9
  AMP PEAK  9(8Q24.13) WILD-TYPE     51    102     49
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                           29                            102
  CLUS_3                            9                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(8Q24.13) MUTATED       51     12      5     25      6
  AMP PEAK  9(8Q24.13) WILD-TYPE     84    100    103    102     22
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           51                             84
  CLUS_2                           12                            100
  CLUS_3                            5                            103
  CLUS_4                           25                            102
  CLUS_5                            6                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       52     12      7     28
  AMP PEAK  9(8Q24.13) WILD-TYPE     83    101    118    109
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           52                             83
  CLUS_2                           12                            101
  CLUS_3                            7                            118
  CLUS_4                           28                            109
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       30     23     36      6
  AMP PEAK  9(8Q24.13) WILD-TYPE    106     81    151     66
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           30                            106
  CLUS_2                           23                             81
  CLUS_3                           36                            151
  CLUS_4                            6                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       44     17     25      9
  AMP PEAK  9(8Q24.13) WILD-TYPE    111     90    112     91
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           44                            111
  CLUS_2                           17                             90
  CLUS_3                           25                            112
  CLUS_4                            9                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(8Q24.13) MUTATED       42      8      4     26      5      4
  AMP PEAK  9(8Q24.13) WILD-TYPE     71     86     65    120     29     14
                                vv
clus                             CLUS_7
  AMP PEAK  9(8Q24.13) MUTATED        6
  AMP PEAK  9(8Q24.13) WILD-TYPE     19
D9V11, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           42                             71
  CLUS_2                            8                             86
  CLUS_3                            4                             65
  CLUS_4                           26                            120
  CLUS_5                            5                             29
  CLUS_6                            4                             14
  CLUS_7                            6                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(8Q24.13) MUTATED       47     23     14     11
  AMP PEAK  9(8Q24.13) WILD-TYPE    101    118     98     87
D9V12, multiclass
        clus
vv       AMP PEAK  9(8Q24.13) MUTATED AMP PEAK  9(8Q24.13) WILD-TYPE
  CLUS_1                           47                            101
  CLUS_2                           23                            118
  CLUS_3                           14                             98
  CLUS_4                           11                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED        2      2      0
  AMP PEAK 10(9Q34.3) WILD-TYPE      7      8      8
D10V1, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           2                             8
  CLUS_3                           0                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        1      2      1      0
  AMP PEAK 10(9Q34.3) WILD-TYPE      6      5      6      6
D10V2, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           2                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED       21     11     13
  AMP PEAK 10(9Q34.3) WILD-TYPE    147    107    213
D10V3, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          21                           147
  CLUS_2                          11                           107
  CLUS_3                          13                           213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       27      7      3      8
  AMP PEAK 10(9Q34.3) WILD-TYPE    196     65     54    147
D10V4, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          27                           196
  CLUS_2                           7                            65
  CLUS_3                           3                            54
  CLUS_4                           8                           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        4     10      7      4
  AMP PEAK 10(9Q34.3) WILD-TYPE     48     52     61     70
D10V5, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                          10                            52
  CLUS_3                           7                            61
  CLUS_4                           4                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(9Q34.3) MUTATED        7     14      4
  AMP PEAK 10(9Q34.3) WILD-TYPE     60    117     54
D10V6, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                          14                           117
  CLUS_3                           4                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(9Q34.3) MUTATED       11     18      8      7      1
  AMP PEAK 10(9Q34.3) WILD-TYPE    124     94    100    120     27
D10V7, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          11                           124
  CLUS_2                          18                            94
  CLUS_3                           8                           100
  CLUS_4                           7                           120
  CLUS_5                           1                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED        8     19      7     11
  AMP PEAK 10(9Q34.3) WILD-TYPE    127     94    118    126
D10V8, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           8                           127
  CLUS_2                          19                            94
  CLUS_3                           7                           118
  CLUS_4                          11                           126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       10     14     12      7
  AMP PEAK 10(9Q34.3) WILD-TYPE    126     90    175     65
D10V9, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          10                           126
  CLUS_2                          14                            90
  CLUS_3                          12                           175
  CLUS_4                           7                            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       13      8      8     14
  AMP PEAK 10(9Q34.3) WILD-TYPE    142     99    129     86
D10V10, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          13                           142
  CLUS_2                           8                            99
  CLUS_3                           8                           129
  CLUS_4                          14                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(9Q34.3) MUTATED        9     12      5      9      2      4
  AMP PEAK 10(9Q34.3) WILD-TYPE    104     82     64    137     32     14
                               vv
clus                            CLUS_7
  AMP PEAK 10(9Q34.3) MUTATED        2
  AMP PEAK 10(9Q34.3) WILD-TYPE     23
D10V11, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                           9                           104
  CLUS_2                          12                            82
  CLUS_3                           5                            64
  CLUS_4                           9                           137
  CLUS_5                           2                            32
  CLUS_6                           4                            14
  CLUS_7                           2                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(9Q34.3) MUTATED       12     10      6     15
  AMP PEAK 10(9Q34.3) WILD-TYPE    136    131    106     83
D10V12, multiclass
        clus
vv       AMP PEAK 10(9Q34.3) MUTATED AMP PEAK 10(9Q34.3) WILD-TYPE
  CLUS_1                          12                           136
  CLUS_2                          10                           131
  CLUS_3                           6                           106
  CLUS_4                          15                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED        3      1      2
  AMP PEAK 11(10P15.3) WILD-TYPE      6      9      6
D11V1, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED        1      4      0      1
  AMP PEAK 11(10P15.3) WILD-TYPE      6      3      7      5
D11V2, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED       59      6      5
  AMP PEAK 11(10P15.3) WILD-TYPE    109    112    221
D11V3, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           59                            109
  CLUS_2                            6                            112
  CLUS_3                            5                            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       64      2      4      0
  AMP PEAK 11(10P15.3) WILD-TYPE    159     70     53    155
D11V4, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           64                            159
  CLUS_2                            2                             70
  CLUS_3                            4                             53
  CLUS_4                            0                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       13      9     13      5
  AMP PEAK 11(10P15.3) WILD-TYPE     39     53     55     69
D11V5, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                            9                             53
  CLUS_3                           13                             55
  CLUS_4                            5                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(10P15.3) MUTATED        9     26      5
  AMP PEAK 11(10P15.3) WILD-TYPE     58    105     53
D11V6, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                           26                            105
  CLUS_3                            5                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(10P15.3) MUTATED       41     13      0     15      1
  AMP PEAK 11(10P15.3) WILD-TYPE     94     99    108    112     27
D11V7, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           41                             94
  CLUS_2                           13                             99
  CLUS_3                            0                            108
  CLUS_4                           15                            112
  CLUS_5                            1                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       40     13      0     17
  AMP PEAK 11(10P15.3) WILD-TYPE     95    100    125    120
D11V8, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           40                             95
  CLUS_2                           13                            100
  CLUS_3                            0                            125
  CLUS_4                           17                            120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       19     25     20      3
  AMP PEAK 11(10P15.3) WILD-TYPE    117     79    167     69
D11V9, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           19                            117
  CLUS_2                           25                             79
  CLUS_3                           20                            167
  CLUS_4                            3                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       33      9     15     10
  AMP PEAK 11(10P15.3) WILD-TYPE    122     98    122     90
D11V10, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           33                            122
  CLUS_2                            9                             98
  CLUS_3                           15                            122
  CLUS_4                           10                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(10P15.3) MUTATED       27      8      1     15      6      7
  AMP PEAK 11(10P15.3) WILD-TYPE     86     86     68    131     28     11
                                vv
clus                             CLUS_7
  AMP PEAK 11(10P15.3) MUTATED        3
  AMP PEAK 11(10P15.3) WILD-TYPE     22
D11V11, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           27                             86
  CLUS_2                            8                             86
  CLUS_3                            1                             68
  CLUS_4                           15                            131
  CLUS_5                            6                             28
  CLUS_6                            7                             11
  CLUS_7                            3                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(10P15.3) MUTATED       39     11     10      7
  AMP PEAK 11(10P15.3) WILD-TYPE    109    130    102     91
D11V12, multiclass
        clus
vv       AMP PEAK 11(10P15.3) MUTATED AMP PEAK 11(10P15.3) WILD-TYPE
  CLUS_1                           39                            109
  CLUS_2                           11                            130
  CLUS_3                           10                            102
  CLUS_4                            7                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(11Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED        0      4      1
  AMP PEAK 12(11Q24.1) WILD-TYPE      9      6      7
D12V1, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            4                              6
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED        0      2      3      0
  AMP PEAK 12(11Q24.1) WILD-TYPE      7      5      4      6
D12V2, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            2                              5
  CLUS_3                            3                              4
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED       34     19     33
  AMP PEAK 12(11Q24.1) WILD-TYPE    134     99    193
D12V3, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           34                            134
  CLUS_2                           19                             99
  CLUS_3                           33                            193
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       48      7      4     26
  AMP PEAK 12(11Q24.1) WILD-TYPE    175     65     53    129
D12V4, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           48                            175
  CLUS_2                            7                             65
  CLUS_3                            4                             53
  CLUS_4                           26                            129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED        5      9     19     11
  AMP PEAK 12(11Q24.1) WILD-TYPE     47     53     49     63
D12V5, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            5                             47
  CLUS_2                            9                             53
  CLUS_3                           19                             49
  CLUS_4                           11                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(11Q24.1) MUTATED        5     29     10
  AMP PEAK 12(11Q24.1) WILD-TYPE     62    102     48
D12V6, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                           29                            102
  CLUS_3                           10                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(11Q24.1) MUTATED       28     10     19     22      7
  AMP PEAK 12(11Q24.1) WILD-TYPE    107    102     89    105     21
D12V7, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           28                            107
  CLUS_2                           10                            102
  CLUS_3                           19                             89
  CLUS_4                           22                            105
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       30     11     21     24
  AMP PEAK 12(11Q24.1) WILD-TYPE    105    102    104    113
D12V8, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           30                            105
  CLUS_2                           11                            102
  CLUS_3                           21                            104
  CLUS_4                           24                            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       26     11     32     14
  AMP PEAK 12(11Q24.1) WILD-TYPE    110     93    155     58
D12V9, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           26                            110
  CLUS_2                           11                             93
  CLUS_3                           32                            155
  CLUS_4                           14                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       38     14     22      9
  AMP PEAK 12(11Q24.1) WILD-TYPE    117     93    115     91
D12V10, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           38                            117
  CLUS_2                           14                             93
  CLUS_3                           22                            115
  CLUS_4                            9                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(11Q24.1) MUTATED       26      8      9     25      7      5
  AMP PEAK 12(11Q24.1) WILD-TYPE     87     86     60    121     27     13
                                vv
clus                             CLUS_7
  AMP PEAK 12(11Q24.1) MUTATED        3
  AMP PEAK 12(11Q24.1) WILD-TYPE     22
D12V11, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           26                             87
  CLUS_2                            8                             86
  CLUS_3                            9                             60
  CLUS_4                           25                            121
  CLUS_5                            7                             27
  CLUS_6                            5                             13
  CLUS_7                            3                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(11Q24.1) MUTATED       34     25     16      8
  AMP PEAK 12(11Q24.1) WILD-TYPE    114    116     96     90
D12V12, multiclass
        clus
vv       AMP PEAK 12(11Q24.1) MUTATED AMP PEAK 12(11Q24.1) WILD-TYPE
  CLUS_1                           34                            114
  CLUS_2                           25                            116
  CLUS_3                           16                             96
  CLUS_4                            8                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED        3      2      2
  AMP PEAK 13(12P13.32) WILD-TYPE      6      8      6
D13V1, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             3                               6
  CLUS_2                             2                               8
  CLUS_3                             2                               6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED        2      4      0      1
  AMP PEAK 13(12P13.32) WILD-TYPE      5      3      7      5
D13V2, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             2                               5
  CLUS_2                             4                               3
  CLUS_3                             0                               7
  CLUS_4                             1                               5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED       52     15      4
  AMP PEAK 13(12P13.32) WILD-TYPE    116    103    222
D13V3, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            52                             116
  CLUS_2                            15                             103
  CLUS_3                             4                             222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       54      9      3      5
  AMP PEAK 13(12P13.32) WILD-TYPE    169     63     54    150
D13V4, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            54                             169
  CLUS_2                             9                              63
  CLUS_3                             3                              54
  CLUS_4                             5                             150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED        9     16      9      8
  AMP PEAK 13(12P13.32) WILD-TYPE     43     46     59     66
D13V5, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             9                              43
  CLUS_2                            16                              46
  CLUS_3                             9                              59
  CLUS_4                             8                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(12P13.32) MUTATED        9     27      6
  AMP PEAK 13(12P13.32) WILD-TYPE     58    104     52
D13V6, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             9                              58
  CLUS_2                            27                             104
  CLUS_3                             6                              52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(12P13.32) MUTATED       30     21      4     12      4
  AMP PEAK 13(12P13.32) WILD-TYPE    105     91    104    115     24
D13V7, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            30                             105
  CLUS_2                            21                              91
  CLUS_3                             4                             104
  CLUS_4                            12                             115
  CLUS_5                             4                              24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       32     20      5     14
  AMP PEAK 13(12P13.32) WILD-TYPE    103     93    120    123
D13V8, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            32                             103
  CLUS_2                            20                              93
  CLUS_3                             5                             120
  CLUS_4                            14                             123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       16     26     18     10
  AMP PEAK 13(12P13.32) WILD-TYPE    120     78    169     62
D13V9, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            16                             120
  CLUS_2                            26                              78
  CLUS_3                            18                             169
  CLUS_4                            10                              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       30     12      8     20
  AMP PEAK 13(12P13.32) WILD-TYPE    125     95    129     80
D13V10, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            30                             125
  CLUS_2                            12                              95
  CLUS_3                             8                             129
  CLUS_4                            20                              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(12P13.32) MUTATED       25     12      6     10      7      7
  AMP PEAK 13(12P13.32) WILD-TYPE     88     82     63    136     27     11
                                 vv
clus                              CLUS_7
  AMP PEAK 13(12P13.32) MUTATED        3
  AMP PEAK 13(12P13.32) WILD-TYPE     22
D13V11, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            25                              88
  CLUS_2                            12                              82
  CLUS_3                             6                              63
  CLUS_4                            10                             136
  CLUS_5                             7                              27
  CLUS_6                             7                              11
  CLUS_7                             3                              22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(12P13.32) MUTATED       33     15      5     17
  AMP PEAK 13(12P13.32) WILD-TYPE    115    126    107     81
D13V12, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            33                             115
  CLUS_2                            15                             126
  CLUS_3                             5                             107
  CLUS_4                            17                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED        0      1      0
  AMP PEAK 14(12Q14.1) WILD-TYPE      9      9      8
D14V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 14(12Q14.1) MUTATED"
clus
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                             1                             26 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5140                     TCGA-DH-5141 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5142                     TCGA-DH-5143 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5144                     TCGA-E1-5302 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5322 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        0      0      1      0
  AMP PEAK 14(12Q14.1) WILD-TYPE      7      7      6      6
D14V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 14(12Q14.1) MUTATED"
clus
  AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE 
                             1                             26 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5140                     TCGA-DH-5141 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5142                     TCGA-DH-5143 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-DH-5144                     TCGA-E1-5302 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5322 
"AMP PEAK 14(12Q14.1) WILD-TYPE" "AMP PEAK 14(12Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED       13     22      2
  AMP PEAK 14(12Q14.1) WILD-TYPE    155     96    224
D14V3, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           13                            155
  CLUS_2                           22                             96
  CLUS_3                            2                            224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       14     18      1      4
  AMP PEAK 14(12Q14.1) WILD-TYPE    209     54     56    151
D14V4, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           14                            209
  CLUS_2                           18                             54
  CLUS_3                            1                             56
  CLUS_4                            4                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        2      9      1      3
  AMP PEAK 14(12Q14.1) WILD-TYPE     50     53     67     71
D14V5, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            2                             50
  CLUS_2                            9                             53
  CLUS_3                            1                             67
  CLUS_4                            3                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(12Q14.1) MUTATED        4      9      2
  AMP PEAK 14(12Q14.1) WILD-TYPE     63    122     56
D14V6, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            4                             63
  CLUS_2                            9                            122
  CLUS_3                            2                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(12Q14.1) MUTATED        3     27      3      3      1
  AMP PEAK 14(12Q14.1) WILD-TYPE    132     85    105    124     27
D14V7, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                            132
  CLUS_2                           27                             85
  CLUS_3                            3                            105
  CLUS_4                            3                            124
  CLUS_5                            1                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        3     26      4      4
  AMP PEAK 14(12Q14.1) WILD-TYPE    132     87    121    133
D14V8, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                            132
  CLUS_2                           26                             87
  CLUS_3                            4                            121
  CLUS_4                            4                            133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED       13     15      6      3
  AMP PEAK 14(12Q14.1) WILD-TYPE    123     89    181     69
D14V9, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                           13                            123
  CLUS_2                           15                             89
  CLUS_3                            6                            181
  CLUS_4                            3                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        8      4      2     23
  AMP PEAK 14(12Q14.1) WILD-TYPE    147    103    135     77
D14V10, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            8                            147
  CLUS_2                            4                            103
  CLUS_3                            2                            135
  CLUS_4                           23                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(12Q14.1) MUTATED        3     20      1      2      5      4
  AMP PEAK 14(12Q14.1) WILD-TYPE    110     74     68    144     29     14
                                vv
clus                             CLUS_7
  AMP PEAK 14(12Q14.1) MUTATED        2
  AMP PEAK 14(12Q14.1) WILD-TYPE     23
D14V11, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            3                            110
  CLUS_2                           20                             74
  CLUS_3                            1                             68
  CLUS_4                            2                            144
  CLUS_5                            5                             29
  CLUS_6                            4                             14
  CLUS_7                            2                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(12Q14.1) MUTATED        8      5      3     21
  AMP PEAK 14(12Q14.1) WILD-TYPE    140    136    109     77
D14V12, multiclass
        clus
vv       AMP PEAK 14(12Q14.1) MUTATED AMP PEAK 14(12Q14.1) WILD-TYPE
  CLUS_1                            8                            140
  CLUS_2                            5                            136
  CLUS_3                            3                            109
  CLUS_4                           21                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED        0      0      1
  AMP PEAK 15(13Q34) WILD-TYPE      9     10      7
D15V1, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 15(13Q34) MUTATED"
clus
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                           1                           26 
                  TCGA-CS-4942                   TCGA-CS-4943 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-4944                   TCGA-CS-5390 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5394                   TCGA-CS-5395 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5396                   TCGA-DB-5270 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5273                   TCGA-DB-5274 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5275                   TCGA-DB-5276 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5278                   TCGA-DB-5280 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5281                   TCGA-DH-5140 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5141                   TCGA-DH-5142 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5143                   TCGA-DH-5144 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5302                   TCGA-E1-5303 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5304                   TCGA-E1-5311 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5318                   TCGA-E1-5322 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        0      1      0      0
  AMP PEAK 15(13Q34) WILD-TYPE      7      6      7      6
D15V2, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 15(13Q34) MUTATED"
clus
  AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE 
                           1                           26 
                  TCGA-CS-4942                   TCGA-CS-4943 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-4944                   TCGA-CS-5390 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5394                   TCGA-CS-5395 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-CS-5396                   TCGA-DB-5270 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5273                   TCGA-DB-5274 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5275                   TCGA-DB-5276 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5278                   TCGA-DB-5280 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DB-5281                   TCGA-DH-5140 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5141                   TCGA-DH-5142 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-DH-5143                   TCGA-DH-5144 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5302                   TCGA-E1-5303 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5304                   TCGA-E1-5311 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                  TCGA-E1-5318                   TCGA-E1-5322 
"AMP PEAK 15(13Q34) WILD-TYPE" "AMP PEAK 15(13Q34) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED       12      8      2
  AMP PEAK 15(13Q34) WILD-TYPE    156    110    224
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         12                          156
  CLUS_2                          8                          110
  CLUS_3                          2                          224
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       18      3      0      1
  AMP PEAK 15(13Q34) WILD-TYPE    205     69     57    154
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         18                          205
  CLUS_2                          3                           69
  CLUS_3                          0                           57
  CLUS_4                          1                          154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        2      7      3      2
  AMP PEAK 15(13Q34) WILD-TYPE     50     55     65     72
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          2                           50
  CLUS_2                          7                           55
  CLUS_3                          3                           65
  CLUS_4                          2                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(13Q34) MUTATED        3      9      2
  AMP PEAK 15(13Q34) WILD-TYPE     64    122     56
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          3                           64
  CLUS_2                          9                          122
  CLUS_3                          2                           56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(13Q34) MUTATED        7      8      0      6      1
  AMP PEAK 15(13Q34) WILD-TYPE    128    104    108    121     27
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          7                          128
  CLUS_2                          8                          104
  CLUS_3                          0                          108
  CLUS_4                          6                          121
  CLUS_5                          1                           27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        8      8      0      6
  AMP PEAK 15(13Q34) WILD-TYPE    127    105    125    131
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          8                          127
  CLUS_2                          8                          105
  CLUS_3                          0                          125
  CLUS_4                          6                          131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED        9      3      7      1
  AMP PEAK 15(13Q34) WILD-TYPE    127    101    180     71
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          9                          127
  CLUS_2                          3                          101
  CLUS_3                          7                          180
  CLUS_4                          1                           71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       10      0      6      4
  AMP PEAK 15(13Q34) WILD-TYPE    145    107    131     96
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         10                          145
  CLUS_2                          0                          107
  CLUS_3                          6                          131
  CLUS_4                          4                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 15(13Q34) MUTATED        5      7      0      6      2      0      0
  AMP PEAK 15(13Q34) WILD-TYPE    108     87     69    140     32     18     25
D15V11, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                          5                          108
  CLUS_2                          7                           87
  CLUS_3                          0                           69
  CLUS_4                          6                          140
  CLUS_5                          2                           32
  CLUS_6                          0                           18
  CLUS_7                          0                           25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(13Q34) MUTATED       10      2      4      4
  AMP PEAK 15(13Q34) WILD-TYPE    138    139    108     94
D15V12, multiclass
        clus
vv       AMP PEAK 15(13Q34) MUTATED AMP PEAK 15(13Q34) WILD-TYPE
  CLUS_1                         10                          138
  CLUS_2                          2                          139
  CLUS_3                          4                          108
  CLUS_4                          4                           94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        1      1      1
  AMP PEAK 16(15Q26.3) WILD-TYPE      8      9      7
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        0      3      0      0
  AMP PEAK 16(15Q26.3) WILD-TYPE      7      4      7      6
D16V2, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            3                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED       13      6      0
  AMP PEAK 16(15Q26.3) WILD-TYPE    155    112    226
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           13                            155
  CLUS_2                            6                            112
  CLUS_3                            0                            226
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED       15      4      0      0
  AMP PEAK 16(15Q26.3) WILD-TYPE    208     68     57    155
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           15                            208
  CLUS_2                            4                             68
  CLUS_3                            0                             57
  CLUS_4                            0                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        1      5      2      1
  AMP PEAK 16(15Q26.3) WILD-TYPE     51     57     66     73
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                             51
  CLUS_2                            5                             57
  CLUS_3                            2                             66
  CLUS_4                            1                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(15Q26.3) MUTATED        1      6      2
  AMP PEAK 16(15Q26.3) WILD-TYPE     66    125     56
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            1                             66
  CLUS_2                            6                            125
  CLUS_3                            2                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(15Q26.3) MUTATED        6      8      0      4      1
  AMP PEAK 16(15Q26.3) WILD-TYPE    129    104    108    123     27
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            6                            129
  CLUS_2                            8                            104
  CLUS_3                            0                            108
  CLUS_4                            4                            123
  CLUS_5                            1                             27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        7      8      0      4
  AMP PEAK 16(15Q26.3) WILD-TYPE    128    105    125    133
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            7                            128
  CLUS_2                            8                            105
  CLUS_3                            0                            125
  CLUS_4                            4                            133
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        6      6      7      0
  AMP PEAK 16(15Q26.3) WILD-TYPE    130     98    180     72
D16V9, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            6                            130
  CLUS_2                            6                             98
  CLUS_3                            7                            180
  CLUS_4                            0                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        7      3      2      7
  AMP PEAK 16(15Q26.3) WILD-TYPE    148    104    135     93
D16V10, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            7                            148
  CLUS_2                            3                            104
  CLUS_3                            2                            135
  CLUS_4                            7                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(15Q26.3) MUTATED        3      6      0      4      1      3
  AMP PEAK 16(15Q26.3) WILD-TYPE    110     88     69    142     33     15
                                vv
clus                             CLUS_7
  AMP PEAK 16(15Q26.3) MUTATED        2
  AMP PEAK 16(15Q26.3) WILD-TYPE     23
D16V11, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            3                            110
  CLUS_2                            6                             88
  CLUS_3                            0                             69
  CLUS_4                            4                            142
  CLUS_5                            1                             33
  CLUS_6                            3                             15
  CLUS_7                            2                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(15Q26.3) MUTATED        8      4      2      5
  AMP PEAK 16(15Q26.3) WILD-TYPE    140    137    110     93
D16V12, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            8                            140
  CLUS_2                            4                            137
  CLUS_3                            2                            110
  CLUS_4                            5                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED        0      2      0
  AMP PEAK 17(17Q25.1) WILD-TYPE      9      8      8
D17V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 17(17Q25.1) MUTATED"
clus
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK 17(17Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED        0      2      0      0
  AMP PEAK 17(17Q25.1) WILD-TYPE      7      5      7      6
D17V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 17(17Q25.1) MUTATED"
clus
  AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4943 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-4944                     TCGA-CS-5390 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5394                     TCGA-CS-5395 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-CS-5396                     TCGA-DB-5270 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5273                     TCGA-DB-5274 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5275                     TCGA-DB-5276 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5277                     TCGA-DB-5278 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DB-5280                     TCGA-DB-5281 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5302                     TCGA-E1-5303 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"AMP PEAK 17(17Q25.1) WILD-TYPE" "AMP PEAK 17(17Q25.1) WILD-TYPE" 
                    TCGA-E1-5322 
"AMP PEAK 17(17Q25.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED       19     13     12
  AMP PEAK 17(17Q25.1) WILD-TYPE    149    105    214
D17V3, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           19                            149
  CLUS_2                           13                            105
  CLUS_3                           12                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       22      9      2     11
  AMP PEAK 17(17Q25.1) WILD-TYPE    201     63     55    144
D17V4, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           22                            201
  CLUS_2                            9                             63
  CLUS_3                            2                             55
  CLUS_4                           11                            144
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED        4      6      2      3
  AMP PEAK 17(17Q25.1) WILD-TYPE     48     56     66     71
D17V5, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                            6                             56
  CLUS_3                            2                             66
  CLUS_4                            3                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(17Q25.1) MUTATED        6      6      3
  AMP PEAK 17(17Q25.1) WILD-TYPE     61    125     55
D17V6, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            6                            125
  CLUS_3                            3                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(17Q25.1) MUTATED       11     17      7      9      0
  AMP PEAK 17(17Q25.1) WILD-TYPE    124     95    101    118     28
D17V7, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           11                            124
  CLUS_2                           17                             95
  CLUS_3                            7                            101
  CLUS_4                            9                            118
  CLUS_5                            0                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       10     17      9      8
  AMP PEAK 17(17Q25.1) WILD-TYPE    125     96    116    129
D17V8, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           10                            125
  CLUS_2                           17                             96
  CLUS_3                            9                            116
  CLUS_4                            8                            129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       13     14     11      6
  AMP PEAK 17(17Q25.1) WILD-TYPE    123     90    176     66
D17V9, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           13                            123
  CLUS_2                           14                             90
  CLUS_3                           11                            176
  CLUS_4                            6                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       16      9      9     10
  AMP PEAK 17(17Q25.1) WILD-TYPE    139     98    128     90
D17V10, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           16                            139
  CLUS_2                            9                             98
  CLUS_3                            9                            128
  CLUS_4                           10                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(17Q25.1) MUTATED       12     10      8      9      2      2
  AMP PEAK 17(17Q25.1) WILD-TYPE    101     84     61    137     32     16
                                vv
clus                             CLUS_7
  AMP PEAK 17(17Q25.1) MUTATED        1
  AMP PEAK 17(17Q25.1) WILD-TYPE     24
D17V11, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           12                            101
  CLUS_2                           10                             84
  CLUS_3                            8                             61
  CLUS_4                            9                            137
  CLUS_5                            2                             32
  CLUS_6                            2                             16
  CLUS_7                            1                             24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(17Q25.1) MUTATED       18     12      5      9
  AMP PEAK 17(17Q25.1) WILD-TYPE    130    129    107     89
D17V12, multiclass
        clus
vv       AMP PEAK 17(17Q25.1) MUTATED AMP PEAK 17(17Q25.1) WILD-TYPE
  CLUS_1                           18                            130
  CLUS_2                           12                            129
  CLUS_3                            5                            107
  CLUS_4                            9                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED        1      6      2
  AMP PEAK 18(19P13.3) WILD-TYPE      8      4      6
D18V1, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            6                              4
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED        1      2      5      1
  AMP PEAK 18(19P13.3) WILD-TYPE      6      5      2      5
D18V2, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            2                              5
  CLUS_3                            5                              2
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED       11     39     78
  AMP PEAK 18(19P13.3) WILD-TYPE    157     79    148
D18V3, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           11                            157
  CLUS_2                           39                             79
  CLUS_3                           78                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       18     26      5     75
  AMP PEAK 18(19P13.3) WILD-TYPE    205     46     52     80
D18V4, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           18                            205
  CLUS_2                           26                             46
  CLUS_3                            5                             52
  CLUS_4                           75                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       11     16     15     15
  AMP PEAK 18(19P13.3) WILD-TYPE     41     46     53     59
D18V5, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           11                             41
  CLUS_2                           16                             46
  CLUS_3                           15                             53
  CLUS_4                           15                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19P13.3) MUTATED       15     32     10
  AMP PEAK 18(19P13.3) WILD-TYPE     52     99     48
D18V6, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           15                             52
  CLUS_2                           32                             99
  CLUS_3                           10                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(19P13.3) MUTATED       10     30     56     30      2
  AMP PEAK 18(19P13.3) WILD-TYPE    125     82     52     97     26
D18V7, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           10                            125
  CLUS_2                           30                             82
  CLUS_3                           56                             52
  CLUS_4                           30                             97
  CLUS_5                            2                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED        8     31     58     31
  AMP PEAK 18(19P13.3) WILD-TYPE    127     82     67    106
D18V8, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            8                            127
  CLUS_2                           31                             82
  CLUS_3                           58                             67
  CLUS_4                           31                            106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       26     22     48     30
  AMP PEAK 18(19P13.3) WILD-TYPE    110     82    139     42
D18V9, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           26                            110
  CLUS_2                           22                             82
  CLUS_3                           48                            139
  CLUS_4                           30                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       26     39     32     29
  AMP PEAK 18(19P13.3) WILD-TYPE    129     68    105     71
D18V10, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           26                            129
  CLUS_2                           39                             68
  CLUS_3                           32                            105
  CLUS_4                           29                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(19P13.3) MUTATED        8     27     36     37     10      3
  AMP PEAK 18(19P13.3) WILD-TYPE    105     67     33    109     24     15
                                vv
clus                             CLUS_7
  AMP PEAK 18(19P13.3) MUTATED        5
  AMP PEAK 18(19P13.3) WILD-TYPE     20
D18V11, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                            8                            105
  CLUS_2                           27                             67
  CLUS_3                           36                             33
  CLUS_4                           37                            109
  CLUS_5                           10                             24
  CLUS_6                            3                             15
  CLUS_7                            5                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(19P13.3) MUTATED       19     51     27     29
  AMP PEAK 18(19P13.3) WILD-TYPE    129     90     85     69
D18V12, multiclass
        clus
vv       AMP PEAK 18(19P13.3) MUTATED AMP PEAK 18(19P13.3) WILD-TYPE
  CLUS_1                           19                            129
  CLUS_2                           51                             90
  CLUS_3                           27                             85
  CLUS_4                           29                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED        1      6      2
  AMP PEAK 19(19P13.2) WILD-TYPE      8      4      6
D19V1, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            6                              4
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED        1      2      5      1
  AMP PEAK 19(19P13.2) WILD-TYPE      6      5      2      5
D19V2, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            2                              5
  CLUS_3                            5                              2
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED        7     42     73
  AMP PEAK 19(19P13.2) WILD-TYPE    161     76    153
D19V3, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            7                            161
  CLUS_2                           42                             76
  CLUS_3                           73                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED       12     29      5     72
  AMP PEAK 19(19P13.2) WILD-TYPE    211     43     52     83
D19V4, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           12                            211
  CLUS_2                           29                             43
  CLUS_3                            5                             52
  CLUS_4                           72                             83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED        9     19     13     14
  AMP PEAK 19(19P13.2) WILD-TYPE     43     43     55     60
D19V5, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                           19                             43
  CLUS_3                           13                             55
  CLUS_4                           14                             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(19P13.2) MUTATED       12     34      9
  AMP PEAK 19(19P13.2) WILD-TYPE     55     97     49
D19V6, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                           34                             97
  CLUS_3                            9                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(19P13.2) MUTATED        6     34     54     25      3
  AMP PEAK 19(19P13.2) WILD-TYPE    129     78     54    102     25
D19V7, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            6                            129
  CLUS_2                           34                             78
  CLUS_3                           54                             54
  CLUS_4                           25                            102
  CLUS_5                            3                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED        6     33     57     26
  AMP PEAK 19(19P13.2) WILD-TYPE    129     80     68    111
D19V8, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            6                            129
  CLUS_2                           33                             80
  CLUS_3                           57                             68
  CLUS_4                           26                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED       28     21     42     29
  AMP PEAK 19(19P13.2) WILD-TYPE    108     83    145     43
D19V9, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           28                            108
  CLUS_2                           21                             83
  CLUS_3                           42                            145
  CLUS_4                           29                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED       26     36     28     30
  AMP PEAK 19(19P13.2) WILD-TYPE    129     71    109     70
D19V10, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           26                            129
  CLUS_2                           36                             71
  CLUS_3                           28                            109
  CLUS_4                           30                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(19P13.2) MUTATED        7     31     36     32      8      2
  AMP PEAK 19(19P13.2) WILD-TYPE    106     63     33    114     26     16
                                vv
clus                             CLUS_7
  AMP PEAK 19(19P13.2) MUTATED        4
  AMP PEAK 19(19P13.2) WILD-TYPE     21
D19V11, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                            7                            106
  CLUS_2                           31                             63
  CLUS_3                           36                             33
  CLUS_4                           32                            114
  CLUS_5                            8                             26
  CLUS_6                            2                             16
  CLUS_7                            4                             21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(19P13.2) MUTATED       17     48     24     31
  AMP PEAK 19(19P13.2) WILD-TYPE    131     93     88     67
D19V12, multiclass
        clus
vv       AMP PEAK 19(19P13.2) MUTATED AMP PEAK 19(19P13.2) WILD-TYPE
  CLUS_1                           17                            131
  CLUS_2                           48                             93
  CLUS_3                           24                             88
  CLUS_4                           31                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED        1      1      2
  AMP PEAK 20(XP11.22) WILD-TYPE      8      9      6
D20V1, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED        1      1      1      1
  AMP PEAK 20(XP11.22) WILD-TYPE      6      6      6      5
D20V2, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED       37      5      5
  AMP PEAK 20(XP11.22) WILD-TYPE    131    113    221
D20V3, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           37                            131
  CLUS_2                            5                            113
  CLUS_3                            5                            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       40      4      2      1
  AMP PEAK 20(XP11.22) WILD-TYPE    183     68     55    154
D20V4, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           40                            183
  CLUS_2                            4                             68
  CLUS_3                            2                             55
  CLUS_4                            1                            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED        4      8      9      4
  AMP PEAK 20(XP11.22) WILD-TYPE     48     54     59     70
D20V5, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                            8                             54
  CLUS_3                            9                             59
  CLUS_4                            4                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP11.22) MUTATED        5     15      5
  AMP PEAK 20(XP11.22) WILD-TYPE     62    116     53
D20V6, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                           15                            116
  CLUS_3                            5                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(XP11.22) MUTATED       19     12      1     12      3
  AMP PEAK 20(XP11.22) WILD-TYPE    116    100    107    115     25
D20V7, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           19                            116
  CLUS_2                           12                            100
  CLUS_3                            1                            107
  CLUS_4                           12                            115
  CLUS_5                            3                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       22     11      1     13
  AMP PEAK 20(XP11.22) WILD-TYPE    113    102    124    124
D20V8, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           22                            113
  CLUS_2                           11                            102
  CLUS_3                            1                            124
  CLUS_4                           13                            124
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       15     12     17      1
  AMP PEAK 20(XP11.22) WILD-TYPE    121     92    170     71
D20V9, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           15                            121
  CLUS_2                           12                             92
  CLUS_3                           17                            170
  CLUS_4                            1                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       18      4     13     10
  AMP PEAK 20(XP11.22) WILD-TYPE    137    103    124     90
D20V10, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           18                            137
  CLUS_2                            4                            103
  CLUS_3                           13                            124
  CLUS_4                           10                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(XP11.22) MUTATED       17     11      1     11      2      1
  AMP PEAK 20(XP11.22) WILD-TYPE     96     83     68    135     32     17
                                vv
clus                             CLUS_7
  AMP PEAK 20(XP11.22) MUTATED        2
  AMP PEAK 20(XP11.22) WILD-TYPE     23
D20V11, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           17                             96
  CLUS_2                           11                             83
  CLUS_3                            1                             68
  CLUS_4                           11                            135
  CLUS_5                            2                             32
  CLUS_6                            1                             17
  CLUS_7                            2                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP11.22) MUTATED       24      3     10      8
  AMP PEAK 20(XP11.22) WILD-TYPE    124    138    102     90
D20V12, multiclass
        clus
vv       AMP PEAK 20(XP11.22) MUTATED AMP PEAK 20(XP11.22) WILD-TYPE
  CLUS_1                           24                            124
  CLUS_2                            3                            138
  CLUS_3                           10                            102
  CLUS_4                            8                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(XP11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP11.22) MUTATED        1      1      2
  AMP PEAK 21(XP11.22) WILD-TYPE      8      9      6
D21V1, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            1                              9
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED        1      1      1      1
  AMP PEAK 21(XP11.22) WILD-TYPE      6      6      6      5
D21V2, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                              6
  CLUS_3                            1                              6
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP11.22) MUTATED       52      6      4
  AMP PEAK 21(XP11.22) WILD-TYPE    116    112    222
D21V3, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           52                            116
  CLUS_2                            6                            112
  CLUS_3                            4                            222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       53      3      5      1
  AMP PEAK 21(XP11.22) WILD-TYPE    170     69     52    154
D21V4, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           53                            170
  CLUS_2                            3                             69
  CLUS_3                            5                             52
  CLUS_4                            1                            154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED        5     14     13      5
  AMP PEAK 21(XP11.22) WILD-TYPE     47     48     55     69
D21V5, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            5                             47
  CLUS_2                           14                             48
  CLUS_3                           13                             55
  CLUS_4                            5                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP11.22) MUTATED        7     23      7
  AMP PEAK 21(XP11.22) WILD-TYPE     60    108     51
D21V6, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                           23                            108
  CLUS_3                            7                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP11.22) MUTATED       27     17      1     14      3
  AMP PEAK 21(XP11.22) WILD-TYPE    108     95    107    113     25
D21V7, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           27                            108
  CLUS_2                           17                             95
  CLUS_3                            1                            107
  CLUS_4                           14                            113
  CLUS_5                            3                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       30     16      1     15
  AMP PEAK 21(XP11.22) WILD-TYPE    105     97    124    122
D21V8, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           30                            105
  CLUS_2                           16                             97
  CLUS_3                            1                            124
  CLUS_4                           15                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       20     17     21      0
  AMP PEAK 21(XP11.22) WILD-TYPE    116     87    166     72
D21V9, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           20                            116
  CLUS_2                           17                             87
  CLUS_3                           21                            166
  CLUS_4                            0                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       24      3     17     14
  AMP PEAK 21(XP11.22) WILD-TYPE    131    104    120     86
D21V10, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           24                            131
  CLUS_2                            3                            104
  CLUS_3                           17                            120
  CLUS_4                           14                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(XP11.22) MUTATED       24     15      0     13      3      1
  AMP PEAK 21(XP11.22) WILD-TYPE     89     79     69    133     31     17
                                vv
clus                             CLUS_7
  AMP PEAK 21(XP11.22) MUTATED        2
  AMP PEAK 21(XP11.22) WILD-TYPE     23
D21V11, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           24                             89
  CLUS_2                           15                             79
  CLUS_3                            0                             69
  CLUS_4                           13                            133
  CLUS_5                            3                             31
  CLUS_6                            1                             17
  CLUS_7                            2                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XP11.22) MUTATED       31      4     12     11
  AMP PEAK 21(XP11.22) WILD-TYPE    117    137    100     87
D21V12, multiclass
        clus
vv       AMP PEAK 21(XP11.22) MUTATED AMP PEAK 21(XP11.22) WILD-TYPE
  CLUS_1                           31                            117
  CLUS_2                            4                            137
  CLUS_3                           12                            100
  CLUS_4                           11                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        0      8      2
  DEL PEAK  1(1P36.32) WILD-TYPE      9      2      6
D22V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            8                              2
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        0      1      7      2
  DEL PEAK  1(1P36.32) WILD-TYPE      7      6      0      4
D22V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            1                              6
  CLUS_3                            7                              0
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       11     32    163
  DEL PEAK  1(1P36.32) WILD-TYPE    157     86     63
D22V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                            157
  CLUS_2                           32                             86
  CLUS_3                          163                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       11     16     20    155
  DEL PEAK  1(1P36.32) WILD-TYPE    212     56     37      0
D22V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                            212
  CLUS_2                           16                             56
  CLUS_3                           20                             37
  CLUS_4                          155                              0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        8     20     29     36
  DEL PEAK  1(1P36.32) WILD-TYPE     44     42     39     38
D22V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            8                             44
  CLUS_2                           20                             42
  CLUS_3                           29                             39
  CLUS_4                           36                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       24     46     23
  DEL PEAK  1(1P36.32) WILD-TYPE     43     85     35
D22V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           24                             43
  CLUS_2                           46                             85
  CLUS_3                           23                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        5     22    107     58     14
  DEL PEAK  1(1P36.32) WILD-TYPE    130     90      1     69     14
D22V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                            130
  CLUS_2                           22                             90
  CLUS_3                          107                              1
  CLUS_4                           58                             69
  CLUS_5                           14                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        7     21    123     55
  DEL PEAK  1(1P36.32) WILD-TYPE    128     92      2     82
D22V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                            128
  CLUS_2                           21                             92
  CLUS_3                          123                              2
  CLUS_4                           55                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       35     13     97     59
  DEL PEAK  1(1P36.32) WILD-TYPE    101     91     90     13
D22V9, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           35                            101
  CLUS_2                           13                             91
  CLUS_3                           97                             90
  CLUS_4                           59                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       34     83     66     21
  DEL PEAK  1(1P36.32) WILD-TYPE    121     24     71     79
D22V10, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           34                            121
  CLUS_2                           83                             24
  CLUS_3                           66                             71
  CLUS_4                           21                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        4     30     65     76     14      1
  DEL PEAK  1(1P36.32) WILD-TYPE    109     64      4     70     20     17
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED       14
  DEL PEAK  1(1P36.32) WILD-TYPE     11
D22V11, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            4                            109
  CLUS_2                           30                             64
  CLUS_3                           65                              4
  CLUS_4                           76                             70
  CLUS_5                           14                             20
  CLUS_6                            1                             17
  CLUS_7                           14                             11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       22    102     58     22
  DEL PEAK  1(1P36.32) WILD-TYPE    126     39     54     76
D22V12, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           22                            126
  CLUS_2                          102                             39
  CLUS_3                           58                             54
  CLUS_4                           22                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  2(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        1      7      2
  DEL PEAK  2(1P32.3) WILD-TYPE      8      3      6
D23V1, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           7                             3
  CLUS_3                           2                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        0      1      7      2
  DEL PEAK  2(1P32.3) WILD-TYPE      7      6      0      4
D23V2, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           1                             6
  CLUS_3                           7                             0
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        7     27    162
  DEL PEAK  2(1P32.3) WILD-TYPE    161     91     64
D23V3, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           7                           161
  CLUS_2                          27                            91
  CLUS_3                         162                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        5     13     20    155
  DEL PEAK  2(1P32.3) WILD-TYPE    218     59     37      0
D23V4, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                           218
  CLUS_2                          13                            59
  CLUS_3                          20                            37
  CLUS_4                         155                             0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        8     16     28     35
  DEL PEAK  2(1P32.3) WILD-TYPE     44     46     40     39
D23V5, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                          16                            46
  CLUS_3                          28                            40
  CLUS_4                          35                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       24     41     22
  DEL PEAK  2(1P32.3) WILD-TYPE     43     90     36
D23V6, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                          41                            90
  CLUS_3                          22                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P32.3) MUTATED        4     17    107     55     13
  DEL PEAK  2(1P32.3) WILD-TYPE    131     95      1     72     15
D23V7, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           4                           131
  CLUS_2                          17                            95
  CLUS_3                         107                             1
  CLUS_4                          55                            72
  CLUS_5                          13                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        5     17    123     51
  DEL PEAK  2(1P32.3) WILD-TYPE    130     96      2     86
D23V8, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                           130
  CLUS_2                          17                            96
  CLUS_3                         123                             2
  CLUS_4                          51                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED       34     10     92     58
  DEL PEAK  2(1P32.3) WILD-TYPE    102     94     95     14
D23V9, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          34                           102
  CLUS_2                          10                            94
  CLUS_3                          92                            95
  CLUS_4                          58                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED       33     82     62     17
  DEL PEAK  2(1P32.3) WILD-TYPE    122     25     75     83
D23V10, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          33                           122
  CLUS_2                          82                            25
  CLUS_3                          62                            75
  CLUS_4                          17                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P32.3) MUTATED        5     24     64     72     13      1
  DEL PEAK  2(1P32.3) WILD-TYPE    108     70      5     74     21     17
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P32.3) MUTATED       15
  DEL PEAK  2(1P32.3) WILD-TYPE     10
D23V11, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                           108
  CLUS_2                          24                            70
  CLUS_3                          64                             5
  CLUS_4                          72                            74
  CLUS_5                          13                            21
  CLUS_6                           1                            17
  CLUS_7                          15                            10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED       20    100     56     18
  DEL PEAK  2(1P32.3) WILD-TYPE    128     41     56     80
D23V12, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          20                           128
  CLUS_2                         100                            41
  CLUS_3                          56                            56
  CLUS_4                          18                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      0      0
  DEL PEAK  3(1Q43) WILD-TYPE      7     10      8
D24V1, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5304                  TCGA-E1-5311 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5318 
"DEL PEAK  3(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        1      1      0      0
  DEL PEAK  3(1Q43) WILD-TYPE      6      6      7      6
D24V2, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          2                          25 
                 TCGA-CS-4942                  TCGA-CS-4943 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-4944                  TCGA-CS-5390 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5394                  TCGA-CS-5395 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-CS-5396                  TCGA-DB-5270 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5273                  TCGA-DB-5274 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5275                  TCGA-DB-5276 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5277                  TCGA-DB-5278 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DB-5280                  TCGA-DB-5281 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5140                  TCGA-DH-5141 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5142                  TCGA-DH-5143 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DH-5144                  TCGA-E1-5303 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5304                  TCGA-E1-5311 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-E1-5318 
"DEL PEAK  3(1Q43) WILD-TYPE" 
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED       19      6      6
  DEL PEAK  3(1Q43) WILD-TYPE    149    112    220
D24V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        19                         149
  CLUS_2                         6                         112
  CLUS_3                         6                         220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       21      2      5      3
  DEL PEAK  3(1Q43) WILD-TYPE    202     70     52    152
D24V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        21                         202
  CLUS_2                         2                          70
  CLUS_3                         5                          52
  CLUS_4                         3                         152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        2      8      2      3
  DEL PEAK  3(1Q43) WILD-TYPE     50     54     66     71
D24V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          50
  CLUS_2                         8                          54
  CLUS_3                         2                          66
  CLUS_4                         3                          71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      9      4
  DEL PEAK  3(1Q43) WILD-TYPE     65    122     54
D24V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          65
  CLUS_2                         9                         122
  CLUS_3                         4                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q43) MUTATED       14      7      1      8      1
  DEL PEAK  3(1Q43) WILD-TYPE    121    105    107    119     27
D24V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        14                         121
  CLUS_2                         7                         105
  CLUS_3                         1                         107
  CLUS_4                         8                         119
  CLUS_5                         1                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       15      6      2      8
  DEL PEAK  3(1Q43) WILD-TYPE    120    107    123    129
D24V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        15                         120
  CLUS_2                         6                         107
  CLUS_3                         2                         123
  CLUS_4                         8                         129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED        6     11      9      3
  DEL PEAK  3(1Q43) WILD-TYPE    130     93    178     69
D24V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         6                         130
  CLUS_2                        11                          93
  CLUS_3                         9                         178
  CLUS_4                         3                          69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       10      4      7      8
  DEL PEAK  3(1Q43) WILD-TYPE    145    103    130     92
D24V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        10                         145
  CLUS_2                         4                         103
  CLUS_3                         7                         130
  CLUS_4                         8                          92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q43) MUTATED       10      7      0      7      1      3      1
  DEL PEAK  3(1Q43) WILD-TYPE    103     87     69    139     33     15     24
D24V11, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        10                         103
  CLUS_2                         7                          87
  CLUS_3                         0                          69
  CLUS_4                         7                         139
  CLUS_5                         1                          33
  CLUS_6                         3                          15
  CLUS_7                         1                          24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q43) MUTATED       12      3      8      6
  DEL PEAK  3(1Q43) WILD-TYPE    136    138    104     92
D24V12, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        12                         136
  CLUS_2                         3                         138
  CLUS_3                         8                         104
  CLUS_4                         6                          92
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        2      1      3
  DEL PEAK  4(2Q37.3) WILD-TYPE      7      9      5
D25V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                           1                             9
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        0      4      0      2
  DEL PEAK  4(2Q37.3) WILD-TYPE      7      3      7      4
D25V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           4                             3
  CLUS_3                           0                             7
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED       51     18      8
  DEL PEAK  4(2Q37.3) WILD-TYPE    117    100    218
D25V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          51                           117
  CLUS_2                          18                           100
  CLUS_3                           8                           218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       64      4      3      6
  DEL PEAK  4(2Q37.3) WILD-TYPE    159     68     54    149
D25V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          64                           159
  CLUS_2                           4                            68
  CLUS_3                           3                            54
  CLUS_4                           6                           149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED        8     17     10      4
  DEL PEAK  4(2Q37.3) WILD-TYPE     44     45     58     70
D25V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           8                            44
  CLUS_2                          17                            45
  CLUS_3                          10                            58
  CLUS_4                           4                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q37.3) MUTATED        5     28      6
  DEL PEAK  4(2Q37.3) WILD-TYPE     62    103     52
D25V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           5                            62
  CLUS_2                          28                           103
  CLUS_3                           6                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q37.3) MUTATED       33     22      6     13      3
  DEL PEAK  4(2Q37.3) WILD-TYPE    102     90    102    114     25
D25V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          33                           102
  CLUS_2                          22                            90
  CLUS_3                           6                           102
  CLUS_4                          13                           114
  CLUS_5                           3                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       31     23      6     17
  DEL PEAK  4(2Q37.3) WILD-TYPE    104     90    119    120
D25V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          31                           104
  CLUS_2                          23                            90
  CLUS_3                           6                           119
  CLUS_4                          17                           120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       24     23     20      8
  DEL PEAK  4(2Q37.3) WILD-TYPE    112     81    167     64
D25V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          24                           112
  CLUS_2                          23                            81
  CLUS_3                          20                           167
  CLUS_4                           8                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       36     10     18     11
  DEL PEAK  4(2Q37.3) WILD-TYPE    119     97    119     89
D25V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          36                           119
  CLUS_2                          10                            97
  CLUS_3                          18                           119
  CLUS_4                          11                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q37.3) MUTATED       30     12      7     16      5      3
  DEL PEAK  4(2Q37.3) WILD-TYPE     83     82     62    130     29     15
                               vv
clus                            CLUS_7
  DEL PEAK  4(2Q37.3) MUTATED        2
  DEL PEAK  4(2Q37.3) WILD-TYPE     23
D25V11, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          30                            83
  CLUS_2                          12                            82
  CLUS_3                           7                            62
  CLUS_4                          16                           130
  CLUS_5                           5                            29
  CLUS_6                           3                            15
  CLUS_7                           2                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q37.3) MUTATED       41     14     10     10
  DEL PEAK  4(2Q37.3) WILD-TYPE    107    127    102     88
D25V12, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          41                           107
  CLUS_2                          14                           127
  CLUS_3                          10                           102
  CLUS_4                          10                            88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  5(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        1      2      1
  DEL PEAK  5(3P21.31) WILD-TYPE      8      8      7
D26V1, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                              8
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        0      4      0      0
  DEL PEAK  5(3P21.31) WILD-TYPE      7      3      7      6
D26V2, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED       32     11      5
  DEL PEAK  5(3P21.31) WILD-TYPE    136    107    221
D26V3, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           32                            136
  CLUS_2                           11                            107
  CLUS_3                            5                            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       32      7      3      6
  DEL PEAK  5(3P21.31) WILD-TYPE    191     65     54    149
D26V4, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           32                            191
  CLUS_2                            7                             65
  CLUS_3                            3                             54
  CLUS_4                            6                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED        3     14      3      4
  DEL PEAK  5(3P21.31) WILD-TYPE     49     48     65     70
D26V5, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            3                             49
  CLUS_2                           14                             48
  CLUS_3                            3                             65
  CLUS_4                            4                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3P21.31) MUTATED        3     15      6
  DEL PEAK  5(3P21.31) WILD-TYPE     64    116     52
D26V6, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                           15                            116
  CLUS_3                            6                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3P21.31) MUTATED       16     17      5     10      0
  DEL PEAK  5(3P21.31) WILD-TYPE    119     95    103    117     28
D26V7, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           16                            119
  CLUS_2                           17                             95
  CLUS_3                            5                            103
  CLUS_4                           10                            117
  CLUS_5                            0                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       15     19      5      9
  DEL PEAK  5(3P21.31) WILD-TYPE    120     94    120    128
D26V8, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                           19                             94
  CLUS_3                            5                            120
  CLUS_4                            9                            128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       12     18      9      7
  DEL PEAK  5(3P21.31) WILD-TYPE    124     86    178     65
D26V9, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           12                            124
  CLUS_2                           18                             86
  CLUS_3                            9                            178
  CLUS_4                            7                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       20      5      6     15
  DEL PEAK  5(3P21.31) WILD-TYPE    135    102    131     85
D26V10, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           20                            135
  CLUS_2                            5                            102
  CLUS_3                            6                            131
  CLUS_4                           15                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(3P21.31) MUTATED       14     15      5      7      2      3
  DEL PEAK  5(3P21.31) WILD-TYPE     99     79     64    139     32     15
                                vv
clus                             CLUS_7
  DEL PEAK  5(3P21.31) MUTATED        0
  DEL PEAK  5(3P21.31) WILD-TYPE     25
D26V11, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           14                             99
  CLUS_2                           15                             79
  CLUS_3                            5                             64
  CLUS_4                            7                            139
  CLUS_5                            2                             32
  CLUS_6                            3                             15
  CLUS_7                            0                             25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3P21.31) MUTATED       24      8      4     10
  DEL PEAK  5(3P21.31) WILD-TYPE    124    133    108     88
D26V12, multiclass
        clus
vv       DEL PEAK  5(3P21.31) MUTATED DEL PEAK  5(3P21.31) WILD-TYPE
  CLUS_1                           24                            124
  CLUS_2                            8                            133
  CLUS_3                            4                            108
  CLUS_4                           10                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  6(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED        1      0      2
  DEL PEAK  6(3Q29) WILD-TYPE      8     10      6
D27V1, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         0                          10
  CLUS_3                         2                           6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED        1      1      0      1
  DEL PEAK  6(3Q29) WILD-TYPE      6      6      7      5
D27V2, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         1                           6
  CLUS_3                         0                           7
  CLUS_4                         1                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED       34      9      4
  DEL PEAK  6(3Q29) WILD-TYPE    134    109    222
D27V3, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        34                         134
  CLUS_2                         9                         109
  CLUS_3                         4                         222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED       32      7      4      4
  DEL PEAK  6(3Q29) WILD-TYPE    191     65     53    151
D27V4, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        32                         191
  CLUS_2                         7                          65
  CLUS_3                         4                          53
  CLUS_4                         4                         151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED        5      9      4      6
  DEL PEAK  6(3Q29) WILD-TYPE     47     53     64     68
D27V5, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         5                          47
  CLUS_2                         9                          53
  CLUS_3                         4                          64
  CLUS_4                         6                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3Q29) MUTATED        7     12      5
  DEL PEAK  6(3Q29) WILD-TYPE     60    119     53
D27V6, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                         7                          60
  CLUS_2                        12                         119
  CLUS_3                         5                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3Q29) MUTATED       17     16      2     11      1
  DEL PEAK  6(3Q29) WILD-TYPE    118     96    106    116     27
D27V7, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        17                         118
  CLUS_2                        16                          96
  CLUS_3                         2                         106
  CLUS_4                        11                         116
  CLUS_5                         1                          27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED       16     18      3     10
  DEL PEAK  6(3Q29) WILD-TYPE    119     95    122    127
D27V8, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        16                         119
  CLUS_2                        18                          95
  CLUS_3                         3                         122
  CLUS_4                        10                         127
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED       13     14     14      4
  DEL PEAK  6(3Q29) WILD-TYPE    123     90    173     68
D27V9, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        13                         123
  CLUS_2                        14                          90
  CLUS_3                        14                         173
  CLUS_4                         4                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED       16      4      9     16
  DEL PEAK  6(3Q29) WILD-TYPE    139    103    128     84
D27V10, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        16                         139
  CLUS_2                         4                         103
  CLUS_3                         9                         128
  CLUS_4                        16                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  6(3Q29) MUTATED       13     11      3     11      1      6      0
  DEL PEAK  6(3Q29) WILD-TYPE    100     83     66    135     33     12     25
D27V11, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        13                         100
  CLUS_2                        11                          83
  CLUS_3                         3                          66
  CLUS_4                        11                         135
  CLUS_5                         1                          33
  CLUS_6                         6                          12
  CLUS_7                         0                          25
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3Q29) MUTATED       19      5      7     14
  DEL PEAK  6(3Q29) WILD-TYPE    129    136    105     84
D27V12, multiclass
        clus
vv       DEL PEAK  6(3Q29) MUTATED DEL PEAK  6(3Q29) WILD-TYPE
  CLUS_1                        19                         129
  CLUS_2                         5                         136
  CLUS_3                         7                         105
  CLUS_4                        14                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED        4      4      3
  DEL PEAK  7(4Q34.3) WILD-TYPE      5      6      5
D28V1, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           4                             6
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED        2      5      2      2
  DEL PEAK  7(4Q34.3) WILD-TYPE      5      2      5      4
D28V2, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           5                             2
  CLUS_3                           2                             5
  CLUS_4                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       62     20     55
  DEL PEAK  7(4Q34.3) WILD-TYPE    106     98    171
D28V3, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          62                           106
  CLUS_2                          20                            98
  CLUS_3                          55                           171
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       77      5      5     50
  DEL PEAK  7(4Q34.3) WILD-TYPE    146     67     52    105
D28V4, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          77                           146
  CLUS_2                           5                            67
  CLUS_3                           5                            52
  CLUS_4                          50                           105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED        9     21     23     21
  DEL PEAK  7(4Q34.3) WILD-TYPE     43     41     45     53
D28V5, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                           9                            43
  CLUS_2                          21                            41
  CLUS_3                          23                            45
  CLUS_4                          21                            53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q34.3) MUTATED       15     44     15
  DEL PEAK  7(4Q34.3) WILD-TYPE     52     87     43
D28V6, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          15                            52
  CLUS_2                          44                            87
  CLUS_3                          15                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q34.3) MUTATED       39     22     34     38      3
  DEL PEAK  7(4Q34.3) WILD-TYPE     96     90     74     89     25
D28V7, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          39                            96
  CLUS_2                          22                            90
  CLUS_3                          34                            74
  CLUS_4                          38                            89
  CLUS_5                           3                            25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       36     21     42     37
  DEL PEAK  7(4Q34.3) WILD-TYPE     99     92     83    100
D28V8, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          36                            99
  CLUS_2                          21                            92
  CLUS_3                          42                            83
  CLUS_4                          37                           100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       24     29     54     27
  DEL PEAK  7(4Q34.3) WILD-TYPE    112     75    133     45
D28V9, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          24                           112
  CLUS_2                          29                            75
  CLUS_3                          54                           133
  CLUS_4                          27                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       41     42     34     17
  DEL PEAK  7(4Q34.3) WILD-TYPE    114     65    103     83
D28V10, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          41                           114
  CLUS_2                          42                            65
  CLUS_3                          34                           103
  CLUS_4                          17                            83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(4Q34.3) MUTATED       28     18     21     43     12      7
  DEL PEAK  7(4Q34.3) WILD-TYPE     85     76     48    103     22     11
                               vv
clus                            CLUS_7
  DEL PEAK  7(4Q34.3) MUTATED        5
  DEL PEAK  7(4Q34.3) WILD-TYPE     20
D28V11, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          28                            85
  CLUS_2                          18                            76
  CLUS_3                          21                            48
  CLUS_4                          43                           103
  CLUS_5                          12                            22
  CLUS_6                           7                            11
  CLUS_7                           5                            20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q34.3) MUTATED       43     49     30     12
  DEL PEAK  7(4Q34.3) WILD-TYPE    105     92     82     86
D28V12, multiclass
        clus
vv       DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE
  CLUS_1                          43                           105
  CLUS_2                          49                            92
  CLUS_3                          30                            82
  CLUS_4                          12                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  8(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED        2      3      2
  DEL PEAK  8(5P15.33) WILD-TYPE      7      7      6
D29V1, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            3                              7
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED        1      4      0      2
  DEL PEAK  8(5P15.33) WILD-TYPE      6      3      7      4
D29V2, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED       37      8      5
  DEL PEAK  8(5P15.33) WILD-TYPE    131    110    221
D29V3, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           37                            131
  CLUS_2                            8                            110
  CLUS_3                            5                            221
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED       37      7      3      3
  DEL PEAK  8(5P15.33) WILD-TYPE    186     65     54    152
D29V4, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           37                            186
  CLUS_2                            7                             65
  CLUS_3                            3                             54
  CLUS_4                            3                            152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED        6      5      8      9
  DEL PEAK  8(5P15.33) WILD-TYPE     46     57     60     65
D29V5, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                            5                             57
  CLUS_3                            8                             60
  CLUS_4                            9                             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5P15.33) MUTATED        8     12      8
  DEL PEAK  8(5P15.33) WILD-TYPE     59    119     50
D29V6, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           12                            119
  CLUS_3                            8                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5P15.33) MUTATED       16     17      2     11      3
  DEL PEAK  8(5P15.33) WILD-TYPE    119     95    106    116     25
D29V7, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           16                            119
  CLUS_2                           17                             95
  CLUS_3                            2                            106
  CLUS_4                           11                            116
  CLUS_5                            3                             25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED       17     16      2     14
  DEL PEAK  8(5P15.33) WILD-TYPE    118     97    123    123
D29V8, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           17                            118
  CLUS_2                           16                             97
  CLUS_3                            2                            123
  CLUS_4                           14                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED       11     20     17      2
  DEL PEAK  8(5P15.33) WILD-TYPE    125     84    170     70
D29V9, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           11                            125
  CLUS_2                           20                             84
  CLUS_3                           17                            170
  CLUS_4                            2                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED       16      7     12     15
  DEL PEAK  8(5P15.33) WILD-TYPE    139    100    125     85
D29V10, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           16                            139
  CLUS_2                            7                            100
  CLUS_3                           12                            125
  CLUS_4                           15                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(5P15.33) MUTATED       11      9      3     14      3      7
  DEL PEAK  8(5P15.33) WILD-TYPE    102     85     66    132     31     11
                                vv
clus                             CLUS_7
  DEL PEAK  8(5P15.33) MUTATED        3
  DEL PEAK  8(5P15.33) WILD-TYPE     22
D29V11, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           11                            102
  CLUS_2                            9                             85
  CLUS_3                            3                             66
  CLUS_4                           14                            132
  CLUS_5                            3                             31
  CLUS_6                            7                             11
  CLUS_7                            3                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5P15.33) MUTATED       17     10      7     16
  DEL PEAK  8(5P15.33) WILD-TYPE    131    131    105     82
D29V12, multiclass
        clus
vv       DEL PEAK  8(5P15.33) MUTATED DEL PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           17                            131
  CLUS_2                           10                            131
  CLUS_3                            7                            105
  CLUS_4                           16                             82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  9(5Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED        1      2      3
  DEL PEAK  9(5Q34) WILD-TYPE      8      8      5
D30V1, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         3                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED        1      3      0      2
  DEL PEAK  9(5Q34) WILD-TYPE      6      4      7      4
D30V2, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         3                           4
  CLUS_3                         0                           7
  CLUS_4                         2                           4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED       53      4      7
  DEL PEAK  9(5Q34) WILD-TYPE    115    114    219
D30V3, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        53                         115
  CLUS_2                         4                         114
  CLUS_3                         7                         219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED       52      5      4      3
  DEL PEAK  9(5Q34) WILD-TYPE    171     67     53    152
D30V4, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        52                         171
  CLUS_2                         5                          67
  CLUS_3                         4                          53
  CLUS_4                         3                         152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED        7     13      6      7
  DEL PEAK  9(5Q34) WILD-TYPE     45     49     62     67
D30V5, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         7                          45
  CLUS_2                        13                          49
  CLUS_3                         6                          62
  CLUS_4                         7                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q34) MUTATED        9     17      7
  DEL PEAK  9(5Q34) WILD-TYPE     58    114     51
D30V6, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                         9                          58
  CLUS_2                        17                         114
  CLUS_3                         7                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q34) MUTATED       19     24      3     12      5
  DEL PEAK  9(5Q34) WILD-TYPE    116     88    105    115     23
D30V7, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        19                         116
  CLUS_2                        24                          88
  CLUS_3                         3                         105
  CLUS_4                        12                         115
  CLUS_5                         5                          23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED       20     25      3     15
  DEL PEAK  9(5Q34) WILD-TYPE    115     88    122    122
D30V8, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        20                         115
  CLUS_2                        25                          88
  CLUS_3                         3                         122
  CLUS_4                        15                         122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED       14     28     18      2
  DEL PEAK  9(5Q34) WILD-TYPE    122     76    169     70
D30V9, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        14                         122
  CLUS_2                        28                          76
  CLUS_3                        18                         169
  CLUS_4                         2                          70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED       22      5     16     19
  DEL PEAK  9(5Q34) WILD-TYPE    133    102    121     81
D30V10, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        22                         133
  CLUS_2                         5                         102
  CLUS_3                        16                         121
  CLUS_4                        19                          81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  9(5Q34) MUTATED       16     13      3     14      5      9      2
  DEL PEAK  9(5Q34) WILD-TYPE     97     81     66    132     29      9     23
D30V11, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        16                          97
  CLUS_2                        13                          81
  CLUS_3                         3                          66
  CLUS_4                        14                         132
  CLUS_5                         5                          29
  CLUS_6                         9                           9
  CLUS_7                         2                          23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q34) MUTATED       26      8     10     18
  DEL PEAK  9(5Q34) WILD-TYPE    122    133    102     80
D30V12, multiclass
        clus
vv       DEL PEAK  9(5Q34) MUTATED DEL PEAK  9(5Q34) WILD-TYPE
  CLUS_1                        26                         122
  CLUS_2                         8                         133
  CLUS_3                        10                         102
  CLUS_4                        18                          80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 10(6P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED        0      0      1
  DEL PEAK 10(6P25.3) WILD-TYPE      9     10      7
D31V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 10(6P25.3) MUTATED"
clus
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                            1                            26 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5278                    TCGA-DB-5280 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5281                    TCGA-DH-5140 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DH-5141                    TCGA-DH-5142 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DH-5143                    TCGA-DH-5144 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5302                    TCGA-E1-5303 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5304                    TCGA-E1-5311 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5318                    TCGA-E1-5322 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED        0      1      0      0
  DEL PEAK 10(6P25.3) WILD-TYPE      7      6      7      6
D31V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 10(6P25.3) MUTATED"
clus
  DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE 
                            1                            26 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5278                    TCGA-DB-5280 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DB-5281                    TCGA-DH-5140 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DH-5141                    TCGA-DH-5142 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-DH-5143                    TCGA-DH-5144 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5302                    TCGA-E1-5303 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5304                    TCGA-E1-5311 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                   TCGA-E1-5318                    TCGA-E1-5322 
"DEL PEAK 10(6P25.3) WILD-TYPE" "DEL PEAK 10(6P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED       24     19      7
  DEL PEAK 10(6P25.3) WILD-TYPE    144     99    219
D31V3, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          24                           144
  CLUS_2                          19                            99
  CLUS_3                           7                           219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       27      8      6      8
  DEL PEAK 10(6P25.3) WILD-TYPE    196     64     51    147
D31V4, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          27                           196
  CLUS_2                           8                            64
  CLUS_3                           6                            51
  CLUS_4                           8                           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED        6      9      3      8
  DEL PEAK 10(6P25.3) WILD-TYPE     46     53     65     66
D31V5, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                           6                            46
  CLUS_2                           9                            53
  CLUS_3                           3                            65
  CLUS_4                           8                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.3) MUTATED        7     14      5
  DEL PEAK 10(6P25.3) WILD-TYPE     60    117     53
D31V6, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                          14                           117
  CLUS_3                           5                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.3) MUTATED       13     17      7      7      4
  DEL PEAK 10(6P25.3) WILD-TYPE    122     95    101    120     24
D31V7, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          13                           122
  CLUS_2                          17                            95
  CLUS_3                           7                           101
  CLUS_4                           7                           120
  CLUS_5                           4                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       15     16      8      9
  DEL PEAK 10(6P25.3) WILD-TYPE    120     97    117    128
D31V8, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          15                           120
  CLUS_2                          16                            97
  CLUS_3                           8                           117
  CLUS_4                           9                           128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       15     14     15      6
  DEL PEAK 10(6P25.3) WILD-TYPE    121     90    172     66
D31V9, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          15                           121
  CLUS_2                          14                            90
  CLUS_3                          15                           172
  CLUS_4                           6                            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       14     10     10     16
  DEL PEAK 10(6P25.3) WILD-TYPE    141     97    127     84
D31V10, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          14                           141
  CLUS_2                          10                            97
  CLUS_3                          10                           127
  CLUS_4                          16                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.3) MUTATED        8     14      4     11      6      3
  DEL PEAK 10(6P25.3) WILD-TYPE    105     80     65    135     28     15
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P25.3) MUTATED        4
  DEL PEAK 10(6P25.3) WILD-TYPE     21
D31V11, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                           8                           105
  CLUS_2                          14                            80
  CLUS_3                           4                            65
  CLUS_4                          11                           135
  CLUS_5                           6                            28
  CLUS_6                           3                            15
  CLUS_7                           4                            21
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.3) MUTATED       15     14      4     17
  DEL PEAK 10(6P25.3) WILD-TYPE    133    127    108     81
D31V12, multiclass
        clus
vv       DEL PEAK 10(6P25.3) MUTATED DEL PEAK 10(6P25.3) WILD-TYPE
  CLUS_1                          15                           133
  CLUS_2                          14                           127
  CLUS_3                           4                           108
  CLUS_4                          17                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 11(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED        2      1      0
  DEL PEAK 11(6Q22.31) WILD-TYPE      7      9      8
D32V1, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              9
  CLUS_3                            0                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED        2      1      0      0
  DEL PEAK 11(6Q22.31) WILD-TYPE      5      6      7      6
D32V2, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            1                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED       38     28     12
  DEL PEAK 11(6Q22.31) WILD-TYPE    130     90    214
D32V3, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           38                            130
  CLUS_2                           28                             90
  CLUS_3                           12                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       49     13      9      7
  DEL PEAK 11(6Q22.31) WILD-TYPE    174     59     48    148
D32V4, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           49                            174
  CLUS_2                           13                             59
  CLUS_3                            9                             48
  CLUS_4                            7                            148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED        7     16      7     11
  DEL PEAK 11(6Q22.31) WILD-TYPE     45     46     61     63
D32V5, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            7                             45
  CLUS_2                           16                             46
  CLUS_3                            7                             61
  CLUS_4                           11                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q22.31) MUTATED        8     24      9
  DEL PEAK 11(6Q22.31) WILD-TYPE     59    107     49
D32V6, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           24                            107
  CLUS_3                            9                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q22.31) MUTATED       25     26      7     15      4
  DEL PEAK 11(6Q22.31) WILD-TYPE    110     86    101    112     24
D32V7, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           25                            110
  CLUS_2                           26                             86
  CLUS_3                            7                            101
  CLUS_4                           15                            112
  CLUS_5                            4                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       27     25      7     18
  DEL PEAK 11(6Q22.31) WILD-TYPE    108     88    118    119
D32V8, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           27                            108
  CLUS_2                           25                             88
  CLUS_3                            7                            118
  CLUS_4                           18                            119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       32     19     19      5
  DEL PEAK 11(6Q22.31) WILD-TYPE    104     85    168     67
D32V9, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           32                            104
  CLUS_2                           19                             85
  CLUS_3                           19                            168
  CLUS_4                            5                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       27      8     15     25
  DEL PEAK 11(6Q22.31) WILD-TYPE    128     99    122     75
D32V10, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           27                            128
  CLUS_2                            8                             99
  CLUS_3                           15                            122
  CLUS_4                           25                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q22.31) MUTATED       24     20      4     16      4      5
  DEL PEAK 11(6Q22.31) WILD-TYPE     89     74     65    130     30     13
                                vv
clus                             CLUS_7
  DEL PEAK 11(6Q22.31) MUTATED        2
  DEL PEAK 11(6Q22.31) WILD-TYPE     23
D32V11, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           24                             89
  CLUS_2                           20                             74
  CLUS_3                            4                             65
  CLUS_4                           16                            130
  CLUS_5                            4                             30
  CLUS_6                            5                             13
  CLUS_7                            2                             23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q22.31) MUTATED       31     10     12     22
  DEL PEAK 11(6Q22.31) WILD-TYPE    117    131    100     76
D32V12, multiclass
        clus
vv       DEL PEAK 11(6Q22.31) MUTATED DEL PEAK 11(6Q22.31) WILD-TYPE
  CLUS_1                           31                            117
  CLUS_2                           10                            131
  CLUS_3                           12                            100
  CLUS_4                           22                             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 12(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q24.3) MUTATED        3      1      0
  DEL PEAK 12(6Q24.3) WILD-TYPE      6      9      8
D33V1, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                             9
  CLUS_3                           0                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q24.3) MUTATED        2      2      0      0
  DEL PEAK 12(6Q24.3) WILD-TYPE      5      5      7      6
D33V2, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           2                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q24.3) MUTATED       41     28     13
  DEL PEAK 12(6Q24.3) WILD-TYPE    127     90    213
D33V3, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                          41                           127
  CLUS_2                          28                            90
  CLUS_3                          13                           213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q24.3) MUTATED       53     13      9      7
  DEL PEAK 12(6Q24.3) WILD-TYPE    170     59     48    148
D33V4, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                          53                           170
  CLUS_2                          13                            59
  CLUS_3                           9                            48
  CLUS_4                           7                           148
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q24.3) MUTATED        7     17      8     11
  DEL PEAK 12(6Q24.3) WILD-TYPE     45     45     60     63
D33V5, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          17                            45
  CLUS_3                           8                            60
  CLUS_4                          11                            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q24.3) MUTATED        9     25      9
  DEL PEAK 12(6Q24.3) WILD-TYPE     58    106     49
D33V6, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                          25                           106
  CLUS_3                           9                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q24.3) MUTATED       29     26      7     15      4
  DEL PEAK 12(6Q24.3) WILD-TYPE    106     86    101    112     24
D33V7, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                          29                           106
  CLUS_2                          26                            86
  CLUS_3                           7                           101
  CLUS_4                          15                           112
  CLUS_5                           4                            24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q24.3) MUTATED       31     25      7     18
  DEL PEAK 12(6Q24.3) WILD-TYPE    104     88    118    119
D33V8, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                          31                           104
  CLUS_2                          25                            88
  CLUS_3                           7                           118
  CLUS_4                          18                           119
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q24.3) MUTATED       34     21     20      4
  DEL PEAK 12(6Q24.3) WILD-TYPE    102     83    167     68
D33V9, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                          34                           102
  CLUS_2                          21                            83
  CLUS_3                          20                           167
  CLUS_4                           4                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q24.3) MUTATED       31      9     15     24
  DEL PEAK 12(6Q24.3) WILD-TYPE    124     98    122     76
D33V10, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                          31                           124
  CLUS_2                           9                            98
  CLUS_3                          15                           122
  CLUS_4                          24                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q24.3) MUTATED       26     22      3     16      5      6
  DEL PEAK 12(6Q24.3) WILD-TYPE     87     72     66    130     29     12
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q24.3) MUTATED        1
  DEL PEAK 12(6Q24.3) WILD-TYPE     24
D33V11, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                          26                            87
  CLUS_2                          22                            72
  CLUS_3                           3                            66
  CLUS_4                          16                           130
  CLUS_5                           5                            29
  CLUS_6                           6                            12
  CLUS_7                           1                            24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q24.3) MUTATED       35     11     12     21
  DEL PEAK 12(6Q24.3) WILD-TYPE    113    130    100     77
D33V12, multiclass
        clus
vv       DEL PEAK 12(6Q24.3) MUTATED DEL PEAK 12(6Q24.3) WILD-TYPE
  CLUS_1                          35                           113
  CLUS_2                          11                           130
  CLUS_3                          12                           100
  CLUS_4                          21                            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 13(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.3) MUTATED        0      0      0
  DEL PEAK 13(7P22.3) WILD-TYPE      9     10      8
D34V1, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.3) MUTATED        0      0      0      0
  DEL PEAK 13(7P22.3) WILD-TYPE      7      7      7      6
D34V2, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.3) MUTATED       13      2      6
  DEL PEAK 13(7P22.3) WILD-TYPE    155    116    220
D34V3, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          13                           155
  CLUS_2                           2                           116
  CLUS_3                           6                           220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.3) MUTATED       16      0      2      2
  DEL PEAK 13(7P22.3) WILD-TYPE    207     72     55    153
D34V4, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          16                           207
  CLUS_2                           0                            72
  CLUS_3                           2                            55
  CLUS_4                           2                           153
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.3) MUTATED        4      1      3      1
  DEL PEAK 13(7P22.3) WILD-TYPE     48     61     65     73
D34V5, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           4                            48
  CLUS_2                           1                            61
  CLUS_3                           3                            65
  CLUS_4                           1                            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7P22.3) MUTATED        1      7      1
  DEL PEAK 13(7P22.3) WILD-TYPE     66    124     57
D34V6, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           1                            66
  CLUS_2                           7                           124
  CLUS_3                           1                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7P22.3) MUTATED        9      4      2      6      0
  DEL PEAK 13(7P22.3) WILD-TYPE    126    108    106    121     28
D34V7, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           9                           126
  CLUS_2                           4                           108
  CLUS_3                           2                           106
  CLUS_4                           6                           121
  CLUS_5                           0                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.3) MUTATED        9      4      3      5
  DEL PEAK 13(7P22.3) WILD-TYPE    126    109    122    132
D34V8, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           9                           126
  CLUS_2                           4                           109
  CLUS_3                           3                           122
  CLUS_4                           5                           132
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.3) MUTATED        6      4      6      4
  DEL PEAK 13(7P22.3) WILD-TYPE    130    100    181     68
D34V9, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           6                           130
  CLUS_2                           4                           100
  CLUS_3                           6                           181
  CLUS_4                           4                            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.3) MUTATED       11      3      5      1
  DEL PEAK 13(7P22.3) WILD-TYPE    144    104    132     99
D34V10, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          11                           144
  CLUS_2                           3                           104
  CLUS_3                           5                           132
  CLUS_4                           1                            99
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7P22.3) MUTATED        8      2      2      5      1      1
  DEL PEAK 13(7P22.3) WILD-TYPE    105     92     67    141     33     17
                               vv
clus                            CLUS_7
  DEL PEAK 13(7P22.3) MUTATED        1
  DEL PEAK 13(7P22.3) WILD-TYPE     24
D34V11, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                           8                           105
  CLUS_2                           2                            92
  CLUS_3                           2                            67
  CLUS_4                           5                           141
  CLUS_5                           1                            33
  CLUS_6                           1                            17
  CLUS_7                           1                            24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7P22.3) MUTATED       11      6      2      1
  DEL PEAK 13(7P22.3) WILD-TYPE    137    135    110     97
D34V12, multiclass
        clus
vv       DEL PEAK 13(7P22.3) MUTATED DEL PEAK 13(7P22.3) WILD-TYPE
  CLUS_1                          11                           137
  CLUS_2                           6                           135
  CLUS_3                           2                           110
  CLUS_4                           1                            97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 14(8Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q24.3) MUTATED        0      1      1
  DEL PEAK 14(8Q24.3) WILD-TYPE      9      9      7
D35V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(8Q24.3) MUTATED"
clus
  DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5277                    TCGA-DB-5278 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DH-5141 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5322 
"DEL PEAK 14(8Q24.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.3) MUTATED        0      1      0      1
  DEL PEAK 14(8Q24.3) WILD-TYPE      7      6      7      5
D35V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK 14(8Q24.3) MUTATED"
clus
  DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE 
                            2                            25 
                   TCGA-CS-4942                    TCGA-CS-4943 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-CS-4944                    TCGA-CS-5390 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5394                    TCGA-CS-5395 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-CS-5396                    TCGA-DB-5270 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5273                    TCGA-DB-5274 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5275                    TCGA-DB-5276 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5277                    TCGA-DB-5278 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DB-5280                    TCGA-DH-5141 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5142                    TCGA-DH-5143 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-DH-5144                    TCGA-E1-5302 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5303                    TCGA-E1-5304 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5311                    TCGA-E1-5318 
"DEL PEAK 14(8Q24.3) WILD-TYPE" "DEL PEAK 14(8Q24.3) WILD-TYPE" 
                   TCGA-E1-5322 
"DEL PEAK 14(8Q24.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q24.3) MUTATED       14     13      1
  DEL PEAK 14(8Q24.3) WILD-TYPE    154    105    225
D35V3, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                          14                           154
  CLUS_2                          13                           105
  CLUS_3                           1                           225
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.3) MUTATED       16     11      1      0
  DEL PEAK 14(8Q24.3) WILD-TYPE    207     61     56    155
D35V4, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                          16                           207
  CLUS_2                          11                            61
  CLUS_3                           1                            56
  CLUS_4                           0                           155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.3) MUTATED        3      5      4      4
  DEL PEAK 14(8Q24.3) WILD-TYPE     49     57     64     70
D35V5, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                           3                            49
  CLUS_2                           5                            57
  CLUS_3                           4                            64
  CLUS_4                           4                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8Q24.3) MUTATED        2     10      4
  DEL PEAK 14(8Q24.3) WILD-TYPE     65    121     54
D35V6, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                           2                            65
  CLUS_2                          10                           121
  CLUS_3                           4                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8Q24.3) MUTATED       12     11      0      5      0
  DEL PEAK 14(8Q24.3) WILD-TYPE    123    101    108    122     28
D35V7, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                          12                           123
  CLUS_2                          11                           101
  CLUS_3                           0                           108
  CLUS_4                           5                           122
  CLUS_5                           0                            28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.3) MUTATED       10     12      0      6
  DEL PEAK 14(8Q24.3) WILD-TYPE    125    101    125    131
D35V8, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                          10                           125
  CLUS_2                          12                           101
  CLUS_3                           0                           125
  CLUS_4                           6                           131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.3) MUTATED       12      9      7      0
  DEL PEAK 14(8Q24.3) WILD-TYPE    124     95    180     72
D35V9, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                          12                           124
  CLUS_2                           9                            95
  CLUS_3                           7                           180
  CLUS_4                           0                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.3) MUTATED       10      2      5     11
  DEL PEAK 14(8Q24.3) WILD-TYPE    145    105    132     89
D35V10, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                          10                           145
  CLUS_2                           2                           105
  CLUS_3                           5                           132
  CLUS_4                          11                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8Q24.3) MUTATED        6     10      1      5      2      2
  DEL PEAK 14(8Q24.3) WILD-TYPE    107     84     68    141     32     16
                               vv
clus                            CLUS_7
  DEL PEAK 14(8Q24.3) MUTATED        2
  DEL PEAK 14(8Q24.3) WILD-TYPE     23
D35V11, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                           6                           107
  CLUS_2                          10                            84
  CLUS_3                           1                            68
  CLUS_4                           5                           141
  CLUS_5                           2                            32
  CLUS_6                           2                            16
  CLUS_7                           2                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8Q24.3) MUTATED       11      2      3     12
  DEL PEAK 14(8Q24.3) WILD-TYPE    137    139    109     86
D35V12, multiclass
        clus
vv       DEL PEAK 14(8Q24.3) MUTATED DEL PEAK 14(8Q24.3) WILD-TYPE
  CLUS_1                          11                           137
  CLUS_2                           2                           139
  CLUS_3                           3                           109
  CLUS_4                          12                            86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 15(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED        1      2      3
  DEL PEAK 15(9P23) WILD-TYPE      8      8      5
D36V1, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                         2                           8
  CLUS_3                         3                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED        1      3      1      1
  DEL PEAK 15(9P23) WILD-TYPE      6      4      6      5
D36V2, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                         1                           6
  CLUS_2                         3                           4
  CLUS_3                         1                           6
  CLUS_4                         1                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       65     53     32
  DEL PEAK 15(9P23) WILD-TYPE    103     65    194
D36V3, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        65                         103
  CLUS_2                        53                          65
  CLUS_3                        32                         194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       80     32      9     27
  DEL PEAK 15(9P23) WILD-TYPE    143     40     48    128
D36V4, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        80                         143
  CLUS_2                        32                          40
  CLUS_3                         9                          48
  CLUS_4                        27                         128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       11     27     22     18
  DEL PEAK 15(9P23) WILD-TYPE     41     35     46     56
D36V5, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        11                          41
  CLUS_2                        27                          35
  CLUS_3                        22                          46
  CLUS_4                        18                          56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       10     50     18
  DEL PEAK 15(9P23) WILD-TYPE     57     81     40
D36V6, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        10                          57
  CLUS_2                        50                          81
  CLUS_3                        18                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED       35     44     21     43      7
  DEL PEAK 15(9P23) WILD-TYPE    100     68     87     84     21
D36V7, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        35                         100
  CLUS_2                        44                          68
  CLUS_3                        21                          87
  CLUS_4                        43                          84
  CLUS_5                         7                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       39     43     25     43
  DEL PEAK 15(9P23) WILD-TYPE     96     70    100     94
D36V8, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        39                          96
  CLUS_2                        43                          70
  CLUS_3                        25                         100
  CLUS_4                        43                          94
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       37     31     57     21
  DEL PEAK 15(9P23) WILD-TYPE     99     73    130     51
D36V9, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        37                          99
  CLUS_2                        31                          73
  CLUS_3                        57                         130
  CLUS_4                        21                          51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       44     21     44     37
  DEL PEAK 15(9P23) WILD-TYPE    111     86     93     63
D36V10, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        44                         111
  CLUS_2                        21                          86
  CLUS_3                        44                          93
  CLUS_4                        37                          63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED       32     32     13     47     11      6      5
  DEL PEAK 15(9P23) WILD-TYPE     81     62     56     99     23     12     20
D36V11, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        32                          81
  CLUS_2                        32                          62
  CLUS_3                        13                          56
  CLUS_4                        47                          99
  CLUS_5                        11                          23
  CLUS_6                         6                          12
  CLUS_7                         5                          20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       47     29     33     37
  DEL PEAK 15(9P23) WILD-TYPE    101    112     79     61
D36V12, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        47                         101
  CLUS_2                        29                         112
  CLUS_3                        33                          79
  CLUS_4                        37                          61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 16(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED        1      4      3
  DEL PEAK 16(9P21.3) WILD-TYPE      8      6      5
D37V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           4                             6
  CLUS_3                           3                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED        1      5      1      1
  DEL PEAK 16(9P21.3) WILD-TYPE      6      2      6      5
D37V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           5                             2
  CLUS_3                           1                             6
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       70     74     32
  DEL PEAK 16(9P21.3) WILD-TYPE     98     44    194
D37V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          70                            98
  CLUS_2                          74                            44
  CLUS_3                          32                           194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       83     54     11     26
  DEL PEAK 16(9P21.3) WILD-TYPE    140     18     46    129
D37V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          83                           140
  CLUS_2                          54                            18
  CLUS_3                          11                            46
  CLUS_4                          26                           129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       12     38     26     18
  DEL PEAK 16(9P21.3) WILD-TYPE     40     24     42     56
D37V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          12                            40
  CLUS_2                          38                            24
  CLUS_3                          26                            42
  CLUS_4                          18                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       11     65     18
  DEL PEAK 16(9P21.3) WILD-TYPE     56     66     40
D37V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                          65                            66
  CLUS_3                          18                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED       40     66     19     44      7
  DEL PEAK 16(9P21.3) WILD-TYPE     95     46     89     83     21
D37V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          40                            95
  CLUS_2                          66                            46
  CLUS_3                          19                            89
  CLUS_4                          44                            83
  CLUS_5                           7                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       44     65     23     44
  DEL PEAK 16(9P21.3) WILD-TYPE     91     48    102     93
D37V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          44                            91
  CLUS_2                          65                            48
  CLUS_3                          23                           102
  CLUS_4                          44                            93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       49     42     57     22
  DEL PEAK 16(9P21.3) WILD-TYPE     87     62    130     50
D37V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          49                            87
  CLUS_2                          42                            62
  CLUS_3                          57                           130
  CLUS_4                          22                            50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       48     20     42     60
  DEL PEAK 16(9P21.3) WILD-TYPE    107     87     95     40
D37V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          48                           107
  CLUS_2                          20                            87
  CLUS_3                          42                            95
  CLUS_4                          60                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       33     50     14     48     11      8
  DEL PEAK 16(9P21.3) WILD-TYPE     80     44     55     98     23     10
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED        6
  DEL PEAK 16(9P21.3) WILD-TYPE     19
D37V11, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          33                            80
  CLUS_2                          50                            44
  CLUS_3                          14                            55
  CLUS_4                          48                            98
  CLUS_5                          11                            23
  CLUS_6                           8                            10
  CLUS_7                           6                            19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       51     28     32     59
  DEL PEAK 16(9P21.3) WILD-TYPE     97    113     80     39
D37V12, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          51                            97
  CLUS_2                          28                           113
  CLUS_3                          32                            80
  CLUS_4                          59                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 17(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.3) MUTATED        0      1      3
  DEL PEAK 17(10Q26.3) WILD-TYPE      9      9      5
D38V1, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                            1                              9
  CLUS_3                            3                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED        1      2      0      1
  DEL PEAK 17(10Q26.3) WILD-TYPE      6      5      7      5
D38V2, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            2                              5
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.3) MUTATED       56     83     12
  DEL PEAK 17(10Q26.3) WILD-TYPE    112     35    214
D38V3, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           56                            112
  CLUS_2                           83                             35
  CLUS_3                           12                            214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       65     65     12      8
  DEL PEAK 17(10Q26.3) WILD-TYPE    158      7     45    147
D38V4, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           65                            158
  CLUS_2                           65                              7
  CLUS_3                           12                             45
  CLUS_4                            8                            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       13     35     14     11
  DEL PEAK 17(10Q26.3) WILD-TYPE     39     27     54     63
D38V5, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           35                             27
  CLUS_3                           14                             54
  CLUS_4                           11                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.3) MUTATED       11     52     10
  DEL PEAK 17(10Q26.3) WILD-TYPE     56     79     48
D38V6, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           11                             56
  CLUS_2                           52                             79
  CLUS_3                           10                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q26.3) MUTATED       32     81      4     26      7
  DEL PEAK 17(10Q26.3) WILD-TYPE    103     31    104    101     21
D38V7, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           32                            103
  CLUS_2                           81                             31
  CLUS_3                            4                            104
  CLUS_4                           26                            101
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       34     81      8     27
  DEL PEAK 17(10Q26.3) WILD-TYPE    101     32    117    110
D38V8, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           34                            101
  CLUS_2                           81                             32
  CLUS_3                            8                            117
  CLUS_4                           27                            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       54     43     40     11
  DEL PEAK 17(10Q26.3) WILD-TYPE     82     61    147     61
D38V9, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           54                             82
  CLUS_2                           43                             61
  CLUS_3                           40                            147
  CLUS_4                           11                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       40     14     22     72
  DEL PEAK 17(10Q26.3) WILD-TYPE    115     93    115     28
D38V10, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           40                            115
  CLUS_2                           14                             93
  CLUS_3                           22                            115
  CLUS_4                           72                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(10Q26.3) MUTATED       25     59      6     27     17      9
  DEL PEAK 17(10Q26.3) WILD-TYPE     88     35     63    119     17      9
                                vv
clus                             CLUS_7
  DEL PEAK 17(10Q26.3) MUTATED        5
  DEL PEAK 17(10Q26.3) WILD-TYPE     20
D38V11, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           25                             88
  CLUS_2                           59                             35
  CLUS_3                            6                             63
  CLUS_4                           27                            119
  CLUS_5                           17                             17
  CLUS_6                            9                              9
  CLUS_7                            5                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       42     15     16     75
  DEL PEAK 17(10Q26.3) WILD-TYPE    106    126     96     23
D38V12, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           42                            106
  CLUS_2                           15                            126
  CLUS_3                           16                             96
  CLUS_4                           75                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 18(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11P15.5) MUTATED        3      3      1
  DEL PEAK 18(11P15.5) WILD-TYPE      6      7      7
D39V1, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            3                              7
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P15.5) MUTATED        1      6      0      0
  DEL PEAK 18(11P15.5) WILD-TYPE      6      1      7      6
D39V2, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            6                              1
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11P15.5) MUTATED       76     17     10
  DEL PEAK 18(11P15.5) WILD-TYPE     92    101    216
D39V3, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           76                             92
  CLUS_2                           17                            101
  CLUS_3                           10                            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P15.5) MUTATED       85     12      6      0
  DEL PEAK 18(11P15.5) WILD-TYPE    138     60     51    155
D39V4, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           85                            138
  CLUS_2                           12                             60
  CLUS_3                            6                             51
  CLUS_4                            0                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P15.5) MUTATED       13     18      9     15
  DEL PEAK 18(11P15.5) WILD-TYPE     39     44     59     59
D39V5, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                           18                             44
  CLUS_3                            9                             59
  CLUS_4                           15                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11P15.5) MUTATED       13     27     15
  DEL PEAK 18(11P15.5) WILD-TYPE     54    104     43
D39V6, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           13                             54
  CLUS_2                           27                            104
  CLUS_3                           15                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11P15.5) MUTATED       39     35      0     22      6
  DEL PEAK 18(11P15.5) WILD-TYPE     96     77    108    105     22
D39V7, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           39                             96
  CLUS_2                           35                             77
  CLUS_3                            0                            108
  CLUS_4                           22                            105
  CLUS_5                            6                             22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P15.5) MUTATED       38     38      0     26
  DEL PEAK 18(11P15.5) WILD-TYPE     97     75    125    111
D39V8, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           38                             97
  CLUS_2                           38                             75
  CLUS_3                            0                            125
  CLUS_4                           26                            111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P15.5) MUTATED       22     35     34      8
  DEL PEAK 18(11P15.5) WILD-TYPE    114     69    153     64
D39V9, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           22                            114
  CLUS_2                           35                             69
  CLUS_3                           34                            153
  CLUS_4                            8                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P15.5) MUTATED       37      8     26     28
  DEL PEAK 18(11P15.5) WILD-TYPE    118     99    111     72
D39V10, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           37                            118
  CLUS_2                            8                             99
  CLUS_3                           26                            111
  CLUS_4                           28                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(11P15.5) MUTATED       27     22      5     24      9      7
  DEL PEAK 18(11P15.5) WILD-TYPE     86     72     64    122     25     11
                                vv
clus                             CLUS_7
  DEL PEAK 18(11P15.5) MUTATED        5
  DEL PEAK 18(11P15.5) WILD-TYPE     20
D39V11, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           27                             86
  CLUS_2                           22                             72
  CLUS_3                            5                             64
  CLUS_4                           24                            122
  CLUS_5                            9                             25
  CLUS_6                            7                             11
  CLUS_7                            5                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P15.5) MUTATED       38     15     20     26
  DEL PEAK 18(11P15.5) WILD-TYPE    110    126     92     72
D39V12, multiclass
        clus
vv       DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE
  CLUS_1                           38                            110
  CLUS_2                           15                            126
  CLUS_3                           20                             92
  CLUS_4                           26                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 19(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12P13.1) MUTATED        2      0      0
  DEL PEAK 19(12P13.1) WILD-TYPE      7     10      8
D40V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 19(12P13.1) MUTATED"
clus
  DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4944 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-CS-5390                     TCGA-CS-5394 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-CS-5395                     TCGA-CS-5396 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-E1-5322 
"DEL PEAK 19(12P13.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P13.1) MUTATED        1      1      0      0
  DEL PEAK 19(12P13.1) WILD-TYPE      6      6      7      6
D40V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 19(12P13.1) MUTATED"
clus
  DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE 
                             2                             25 
                    TCGA-CS-4942                     TCGA-CS-4944 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-CS-5390                     TCGA-CS-5394 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-CS-5395                     TCGA-CS-5396 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5270                     TCGA-DB-5273 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5274                     TCGA-DB-5275 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5276                     TCGA-DB-5277 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5278                     TCGA-DB-5280 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DB-5281                     TCGA-DH-5140 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DH-5141                     TCGA-DH-5142 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-DH-5143                     TCGA-DH-5144 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-E1-5303                     TCGA-E1-5304 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-E1-5311                     TCGA-E1-5318 
"DEL PEAK 19(12P13.1) WILD-TYPE" "DEL PEAK 19(12P13.1) WILD-TYPE" 
                    TCGA-E1-5322 
"DEL PEAK 19(12P13.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12P13.1) MUTATED       23      8      8
  DEL PEAK 19(12P13.1) WILD-TYPE    145    110    218
D40V3, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                           23                            145
  CLUS_2                            8                            110
  CLUS_3                            8                            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P13.1) MUTATED       28      4      2      5
  DEL PEAK 19(12P13.1) WILD-TYPE    195     68     55    150
D40V4, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                           28                            195
  CLUS_2                            4                             68
  CLUS_3                            2                             55
  CLUS_4                            5                            150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P13.1) MUTATED        6      7      2      5
  DEL PEAK 19(12P13.1) WILD-TYPE     46     55     66     69
D40V5, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                            7                             55
  CLUS_3                            2                             66
  CLUS_4                            5                             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12P13.1) MUTATED        5     10      5
  DEL PEAK 19(12P13.1) WILD-TYPE     62    121     53
D40V6, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                           10                            121
  CLUS_3                            5                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(12P13.1) MUTATED       15     13      2      9      0
  DEL PEAK 19(12P13.1) WILD-TYPE    120     99    106    118     28
D40V7, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                           13                             99
  CLUS_3                            2                            106
  CLUS_4                            9                            118
  CLUS_5                            0                             28
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P13.1) MUTATED       15     13      4      7
  DEL PEAK 19(12P13.1) WILD-TYPE    120    100    121    130
D40V8, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                           15                            120
  CLUS_2                           13                            100
  CLUS_3                            4                            121
  CLUS_4                            7                            130
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P13.1) MUTATED        7     16     10      5
  DEL PEAK 19(12P13.1) WILD-TYPE    129     88    177     67
D40V9, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                            7                            129
  CLUS_2                           16                             88
  CLUS_3                           10                            177
  CLUS_4                            5                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P13.1) MUTATED       14      4      8     12
  DEL PEAK 19(12P13.1) WILD-TYPE    141    103    129     88
D40V10, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                           14                            141
  CLUS_2                            4                            103
  CLUS_3                            8                            129
  CLUS_4                           12                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(12P13.1) MUTATED       14      5      3      6      5      4
  DEL PEAK 19(12P13.1) WILD-TYPE     99     89     66    140     29     14
                                vv
clus                             CLUS_7
  DEL PEAK 19(12P13.1) MUTATED        1
  DEL PEAK 19(12P13.1) WILD-TYPE     24
D40V11, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                           14                             99
  CLUS_2                            5                             89
  CLUS_3                            3                             66
  CLUS_4                            6                            140
  CLUS_5                            5                             29
  CLUS_6                            4                             14
  CLUS_7                            1                             24
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12P13.1) MUTATED       15      8      4     11
  DEL PEAK 19(12P13.1) WILD-TYPE    133    133    108     87
D40V12, multiclass
        clus
vv       DEL PEAK 19(12P13.1) MUTATED DEL PEAK 19(12P13.1) WILD-TYPE
  CLUS_1                           15                            133
  CLUS_2                            8                            133
  CLUS_3                            4                            108
  CLUS_4                           11                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 20(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q12) MUTATED        1      1      1
  DEL PEAK 20(12Q12) WILD-TYPE      8      9      7
D41V1, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                          1                            8
  CLUS_2                          1                            9
  CLUS_3                          1                            7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q12) MUTATED        1      2      0      0
  DEL PEAK 20(12Q12) WILD-TYPE      6      5      7      6
D41V2, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          2                            5
  CLUS_3                          0                            7
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q12) MUTATED       51      6     11
  DEL PEAK 20(12Q12) WILD-TYPE    117    112    215
D41V3, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                         51                          117
  CLUS_2                          6                          112
  CLUS_3                         11                          215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q12) MUTATED       52      3      5      8
  DEL PEAK 20(12Q12) WILD-TYPE    171     69     52    147
D41V4, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                         52                          171
  CLUS_2                          3                           69
  CLUS_3                          5                           52
  CLUS_4                          8                          147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q12) MUTATED        5      9      7     12
  DEL PEAK 20(12Q12) WILD-TYPE     47     53     61     62
D41V5, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                          5                           47
  CLUS_2                          9                           53
  CLUS_3                          7                           61
  CLUS_4                         12                           62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q12) MUTATED        7     14     12
  DEL PEAK 20(12Q12) WILD-TYPE     60    117     46
D41V6, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                          7                           60
  CLUS_2                         14                          117
  CLUS_3                         12                           46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q12) MUTATED       21     21      5     16      5
  DEL PEAK 20(12Q12) WILD-TYPE    114     91    103    111     23
D41V7, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                         21                          114
  CLUS_2                         21                           91
  CLUS_3                          5                          103
  CLUS_4                         16                          111
  CLUS_5                          5                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q12) MUTATED       23     21      7     17
  DEL PEAK 20(12Q12) WILD-TYPE    112     92    118    120
D41V8, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                         23                          112
  CLUS_2                         21                           92
  CLUS_3                          7                          118
  CLUS_4                         17                          120
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q12) MUTATED       13     25     22      7
  DEL PEAK 20(12Q12) WILD-TYPE    123     79    165     65
D41V9, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                         13                          123
  CLUS_2                         25                           79
  CLUS_3                         22                          165
  CLUS_4                          7                           65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q12) MUTATED       21     12     18     16
  DEL PEAK 20(12Q12) WILD-TYPE    134     95    119     84
D41V10, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                         21                          134
  CLUS_2                         12                           95
  CLUS_3                         18                          119
  CLUS_4                         16                           84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 20(12Q12) MUTATED       20     16      5     14      7      3      2
  DEL PEAK 20(12Q12) WILD-TYPE     93     78     64    132     27     15     23
D41V11, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                         20                           93
  CLUS_2                         16                           78
  CLUS_3                          5                           64
  CLUS_4                         14                          132
  CLUS_5                          7                           27
  CLUS_6                          3                           15
  CLUS_7                          2                           23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q12) MUTATED       24     16     12     15
  DEL PEAK 20(12Q12) WILD-TYPE    124    125    100     83
D41V12, multiclass
        clus
vv       DEL PEAK 20(12Q12) MUTATED DEL PEAK 20(12Q12) WILD-TYPE
  CLUS_1                         24                          124
  CLUS_2                         16                          125
  CLUS_3                         12                          100
  CLUS_4                         15                           83
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 21(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED        5      3      1
  DEL PEAK 21(13Q14.2) WILD-TYPE      4      7      7
D42V1, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED        2      7      0      0
  DEL PEAK 21(13Q14.2) WILD-TYPE      5      0      7      6
D42V2, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            7                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       80     32     29
  DEL PEAK 21(13Q14.2) WILD-TYPE     88     86    197
D42V3, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           80                             88
  CLUS_2                           32                             86
  CLUS_3                           29                            197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       79     23     12     27
  DEL PEAK 21(13Q14.2) WILD-TYPE    144     49     45    128
D42V4, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           79                            144
  CLUS_2                           23                             49
  CLUS_3                           12                             45
  CLUS_4                           27                            128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED        9     26     18     20
  DEL PEAK 21(13Q14.2) WILD-TYPE     43     36     50     54
D42V5, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                           26                             36
  CLUS_3                           18                             50
  CLUS_4                           20                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q14.2) MUTATED       16     39     18
  DEL PEAK 21(13Q14.2) WILD-TYPE     51     92     40
D42V6, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                           39                             92
  CLUS_3                           18                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q14.2) MUTATED       40     47     16     31      7
  DEL PEAK 21(13Q14.2) WILD-TYPE     95     65     92     96     21
D42V7, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           40                             95
  CLUS_2                           47                             65
  CLUS_3                           16                             92
  CLUS_4                           31                             96
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       43     47     19     32
  DEL PEAK 21(13Q14.2) WILD-TYPE     92     66    106    105
D42V8, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           43                             92
  CLUS_2                           47                             66
  CLUS_3                           19                            106
  CLUS_4                           32                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       38     40     40     19
  DEL PEAK 21(13Q14.2) WILD-TYPE     98     64    147     53
D42V9, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           38                             98
  CLUS_2                           40                             64
  CLUS_3                           40                            147
  CLUS_4                           19                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       48     26     27     36
  DEL PEAK 21(13Q14.2) WILD-TYPE    107     81    110     64
D42V10, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           48                            107
  CLUS_2                           26                             81
  CLUS_3                           27                            110
  CLUS_4                           36                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(13Q14.2) MUTATED       34     30     19     30      9     10
  DEL PEAK 21(13Q14.2) WILD-TYPE     79     64     50    116     25      8
                                vv
clus                             CLUS_7
  DEL PEAK 21(13Q14.2) MUTATED        5
  DEL PEAK 21(13Q14.2) WILD-TYPE     20
D42V11, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           34                             79
  CLUS_2                           30                             64
  CLUS_3                           19                             50
  CLUS_4                           30                            116
  CLUS_5                            9                             25
  CLUS_6                           10                              8
  CLUS_7                            5                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q14.2) MUTATED       47     32     23     35
  DEL PEAK 21(13Q14.2) WILD-TYPE    101    109     89     63
D42V12, multiclass
        clus
vv       DEL PEAK 21(13Q14.2) MUTATED DEL PEAK 21(13Q14.2) WILD-TYPE
  CLUS_1                           47                            101
  CLUS_2                           32                            109
  CLUS_3                           23                             89
  CLUS_4                           35                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 22(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q14.2) MUTATED        5      3      1
  DEL PEAK 22(13Q14.2) WILD-TYPE      4      7      7
D43V1, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                            3                              7
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q14.2) MUTATED        2      7      0      0
  DEL PEAK 22(13Q14.2) WILD-TYPE      5      0      7      6
D43V2, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            7                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q14.2) MUTATED       81     33     29
  DEL PEAK 22(13Q14.2) WILD-TYPE     87     85    197
D43V3, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           81                             87
  CLUS_2                           33                             85
  CLUS_3                           29                            197
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q14.2) MUTATED       80     24     12     27
  DEL PEAK 22(13Q14.2) WILD-TYPE    143     48     45    128
D43V4, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           80                            143
  CLUS_2                           24                             48
  CLUS_3                           12                             45
  CLUS_4                           27                            128
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q14.2) MUTATED       10     27     18     20
  DEL PEAK 22(13Q14.2) WILD-TYPE     42     35     50     54
D43V5, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           10                             42
  CLUS_2                           27                             35
  CLUS_3                           18                             50
  CLUS_4                           20                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q14.2) MUTATED       17     40     18
  DEL PEAK 22(13Q14.2) WILD-TYPE     50     91     40
D43V6, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           17                             50
  CLUS_2                           40                             91
  CLUS_3                           18                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q14.2) MUTATED       41     48     16     31      7
  DEL PEAK 22(13Q14.2) WILD-TYPE     94     64     92     96     21
D43V7, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           41                             94
  CLUS_2                           48                             64
  CLUS_3                           16                             92
  CLUS_4                           31                             96
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q14.2) MUTATED       44     48     19     32
  DEL PEAK 22(13Q14.2) WILD-TYPE     91     65    106    105
D43V8, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           44                             91
  CLUS_2                           48                             65
  CLUS_3                           19                            106
  CLUS_4                           32                            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q14.2) MUTATED       40     40     40     19
  DEL PEAK 22(13Q14.2) WILD-TYPE     96     64    147     53
D43V9, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           40                             96
  CLUS_2                           40                             64
  CLUS_3                           40                            147
  CLUS_4                           19                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q14.2) MUTATED       49     26     27     37
  DEL PEAK 22(13Q14.2) WILD-TYPE    106     81    110     63
D43V10, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           49                            106
  CLUS_2                           26                             81
  CLUS_3                           27                            110
  CLUS_4                           37                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(13Q14.2) MUTATED       35     31     19     30      9     10
  DEL PEAK 22(13Q14.2) WILD-TYPE     78     63     50    116     25      8
                                vv
clus                             CLUS_7
  DEL PEAK 22(13Q14.2) MUTATED        5
  DEL PEAK 22(13Q14.2) WILD-TYPE     20
D43V11, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           35                             78
  CLUS_2                           31                             63
  CLUS_3                           19                             50
  CLUS_4                           30                            116
  CLUS_5                            9                             25
  CLUS_6                           10                              8
  CLUS_7                            5                             20
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q14.2) MUTATED       48     32     23     36
  DEL PEAK 22(13Q14.2) WILD-TYPE    100    109     89     62
D43V12, multiclass
        clus
vv       DEL PEAK 22(13Q14.2) MUTATED DEL PEAK 22(13Q14.2) WILD-TYPE
  CLUS_1                           48                            100
  CLUS_2                           32                            109
  CLUS_3                           23                             89
  CLUS_4                           36                             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 23(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED        2      2      0
  DEL PEAK 23(13Q34) WILD-TYPE      7      8      8
D44V1, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          2                            8
  CLUS_3                          0                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED        1      3      0      0
  DEL PEAK 23(13Q34) WILD-TYPE      6      4      7      6
D44V2, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          3                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       57     27     25
  DEL PEAK 23(13Q34) WILD-TYPE    111     91    201
D44V3, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         57                          111
  CLUS_2                         27                           91
  CLUS_3                         25                          201
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       50     23     10     26
  DEL PEAK 23(13Q34) WILD-TYPE    173     49     47    129
D44V4, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         50                          173
  CLUS_2                         23                           49
  CLUS_3                         10                           47
  CLUS_4                         26                          129
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED        7     20     12     15
  DEL PEAK 23(13Q34) WILD-TYPE     45     42     56     59
D44V5, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                          7                           45
  CLUS_2                         20                           42
  CLUS_3                         12                           56
  CLUS_4                         15                           59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q34) MUTATED       12     29     13
  DEL PEAK 23(13Q34) WILD-TYPE     55    102     45
D44V6, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         12                           55
  CLUS_2                         29                          102
  CLUS_3                         13                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q34) MUTATED       28     38     16     22      5
  DEL PEAK 23(13Q34) WILD-TYPE    107     74     92    105     23
D44V7, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         28                          107
  CLUS_2                         38                           74
  CLUS_3                         16                           92
  CLUS_4                         22                          105
  CLUS_5                          5                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       31     38     19     21
  DEL PEAK 23(13Q34) WILD-TYPE    104     75    106    116
D44V8, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         31                          104
  CLUS_2                         38                           75
  CLUS_3                         19                          106
  CLUS_4                         21                          116
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       27     31     31     16
  DEL PEAK 23(13Q34) WILD-TYPE    109     73    156     56
D44V9, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         27                          109
  CLUS_2                         31                           73
  CLUS_3                         31                          156
  CLUS_4                         16                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       32     23     21     29
  DEL PEAK 23(13Q34) WILD-TYPE    123     84    116     71
D44V10, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         32                          123
  CLUS_2                         23                           84
  CLUS_3                         21                          116
  CLUS_4                         29                           71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 23(13Q34) MUTATED       25     23     17     22      7      9      2
  DEL PEAK 23(13Q34) WILD-TYPE     88     71     52    124     27      9     23
D44V11, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         25                           88
  CLUS_2                         23                           71
  CLUS_3                         17                           52
  CLUS_4                         22                          124
  CLUS_5                          7                           27
  CLUS_6                          9                            9
  CLUS_7                          2                           23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(13Q34) MUTATED       33     25     18     29
  DEL PEAK 23(13Q34) WILD-TYPE    115    116     94     69
D44V12, multiclass
        clus
vv       DEL PEAK 23(13Q34) MUTATED DEL PEAK 23(13Q34) WILD-TYPE
  CLUS_1                         33                          115
  CLUS_2                         25                          116
  CLUS_3                         18                           94
  CLUS_4                         29                           69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 24(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q24.3) MUTATED        4      2      1
  DEL PEAK 24(14Q24.3) WILD-TYPE      5      8      7
D45V1, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                            2                              8
  CLUS_3                            1                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q24.3) MUTATED        2      4      0      1
  DEL PEAK 24(14Q24.3) WILD-TYPE      5      3      7      5
D45V2, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            4                              3
  CLUS_3                            0                              7
  CLUS_4                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q24.3) MUTATED       42     40     39
  DEL PEAK 24(14Q24.3) WILD-TYPE    126     78    187
D45V3, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           42                            126
  CLUS_2                           40                             78
  CLUS_3                           39                            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q24.3) MUTATED       54     26     10     30
  DEL PEAK 24(14Q24.3) WILD-TYPE    169     46     47    125
D45V4, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           54                            169
  CLUS_2                           26                             46
  CLUS_3                           10                             47
  CLUS_4                           30                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q24.3) MUTATED        6     24     18     11
  DEL PEAK 24(14Q24.3) WILD-TYPE     46     38     50     63
D45V5, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                            6                             46
  CLUS_2                           24                             38
  CLUS_3                           18                             50
  CLUS_4                           11                             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q24.3) MUTATED       10     39     10
  DEL PEAK 24(14Q24.3) WILD-TYPE     57     92     48
D45V6, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           39                             92
  CLUS_3                           10                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q24.3) MUTATED       25     44     23     21      7
  DEL PEAK 24(14Q24.3) WILD-TYPE    110     68     85    106     21
D45V7, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           25                            110
  CLUS_2                           44                             68
  CLUS_3                           23                             85
  CLUS_4                           21                            106
  CLUS_5                            7                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q24.3) MUTATED       32     44     24     20
  DEL PEAK 24(14Q24.3) WILD-TYPE    103     69    101    117
D45V8, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           32                            103
  CLUS_2                           44                             69
  CLUS_3                           24                            101
  CLUS_4                           20                            117
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q24.3) MUTATED       51     20     30     15
  DEL PEAK 24(14Q24.3) WILD-TYPE     85     84    157     57
D45V9, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           51                             85
  CLUS_2                           20                             84
  CLUS_3                           30                            157
  CLUS_4                           15                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q24.3) MUTATED       39     20     23     34
  DEL PEAK 24(14Q24.3) WILD-TYPE    116     87    114     66
D45V10, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           39                            116
  CLUS_2                           20                             87
  CLUS_3                           23                            114
  CLUS_4                           34                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(14Q24.3) MUTATED       23     38     15     23      7      4
  DEL PEAK 24(14Q24.3) WILD-TYPE     90     56     54    123     27     14
                                vv
clus                             CLUS_7
  DEL PEAK 24(14Q24.3) MUTATED        6
  DEL PEAK 24(14Q24.3) WILD-TYPE     19
D45V11, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           23                             90
  CLUS_2                           38                             56
  CLUS_3                           15                             54
  CLUS_4                           23                            123
  CLUS_5                            7                             27
  CLUS_6                            4                             14
  CLUS_7                            6                             19
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q24.3) MUTATED       43     24     17     32
  DEL PEAK 24(14Q24.3) WILD-TYPE    105    117     95     66
D45V12, multiclass
        clus
vv       DEL PEAK 24(14Q24.3) MUTATED DEL PEAK 24(14Q24.3) WILD-TYPE
  CLUS_1                           43                            105
  CLUS_2                           24                            117
  CLUS_3                           17                             95
  CLUS_4                           32                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 25(15Q21.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED        1      2      2
  DEL PEAK 25(15Q21.3) WILD-TYPE      8      8      6
D46V1, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                              8
  CLUS_3                            2                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q21.3) MUTATED        0      2      1      2
  DEL PEAK 25(15Q21.3) WILD-TYPE      7      5      6      4
D46V2, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            0                              7
  CLUS_2                            2                              5
  CLUS_3                            1                              6
  CLUS_4                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED       22     14     30
  DEL PEAK 25(15Q21.3) WILD-TYPE    146    104    196
D46V3, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           22                            146
  CLUS_2                           14                            104
  CLUS_3                           30                            196
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q21.3) MUTATED       26      8      2     30
  DEL PEAK 25(15Q21.3) WILD-TYPE    197     64     55    125
D46V4, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           26                            197
  CLUS_2                            8                             64
  CLUS_3                            2                             55
  CLUS_4                           30                            125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q21.3) MUTATED        4     14      9      4
  DEL PEAK 25(15Q21.3) WILD-TYPE     48     48     59     70
D46V5, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            4                             48
  CLUS_2                           14                             48
  CLUS_3                            9                             59
  CLUS_4                            4                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED        5     24      2
  DEL PEAK 25(15Q21.3) WILD-TYPE     62    107     56
D46V6, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                           24                            107
  CLUS_3                            2                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q21.3) MUTATED        6     23     23     10      4
  DEL PEAK 25(15Q21.3) WILD-TYPE    129     89     85    117     24
D46V7, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            6                            129
  CLUS_2                           23                             89
  CLUS_3                           23                             85
  CLUS_4                           10                            117
  CLUS_5                            4                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q21.3) MUTATED        9     22     24     11
  DEL PEAK 25(15Q21.3) WILD-TYPE    126     91    101    126
D46V8, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            9                            126
  CLUS_2                           22                             91
  CLUS_3                           24                            101
  CLUS_4                           11                            126
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q21.3) MUTATED       21     11     21     11
  DEL PEAK 25(15Q21.3) WILD-TYPE    115     93    166     61
D46V9, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           21                            115
  CLUS_2                           11                             93
  CLUS_3                           21                            166
  CLUS_4                           11                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q21.3) MUTATED       19     16     15     14
  DEL PEAK 25(15Q21.3) WILD-TYPE    136     91    122     86
D46V10, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           19                            136
  CLUS_2                           16                             91
  CLUS_3                           15                            122
  CLUS_4                           14                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(15Q21.3) MUTATED        6     20     13     15      5      2
  DEL PEAK 25(15Q21.3) WILD-TYPE    107     74     56    131     29     16
                                vv
clus                             CLUS_7
  DEL PEAK 25(15Q21.3) MUTATED        3
  DEL PEAK 25(15Q21.3) WILD-TYPE     22
D46V11, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            6                            107
  CLUS_2                           20                             74
  CLUS_3                           13                             56
  CLUS_4                           15                            131
  CLUS_5                            5                             29
  CLUS_6                            2                             16
  CLUS_7                            3                             22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q21.3) MUTATED       19     22      9     14
  DEL PEAK 25(15Q21.3) WILD-TYPE    129    119    103     84
D46V12, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           19                            129
  CLUS_2                           22                            119
  CLUS_3                            9                            103
  CLUS_4                           14                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 26(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q23) MUTATED        2      3      0
  DEL PEAK 26(18Q23) WILD-TYPE      7      7      8
D47V1, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          3                            7
  CLUS_3                          0                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED        1      3      1      0
  DEL PEAK 26(18Q23) WILD-TYPE      6      4      6      6
D47V2, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          3                            4
  CLUS_3                          1                            6
  CLUS_4                          0                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q23) MUTATED       26     15     37
  DEL PEAK 26(18Q23) WILD-TYPE    142    103    189
D47V3, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         26                          142
  CLUS_2                         15                          103
  CLUS_3                         37                          189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       31     11      2     34
  DEL PEAK 26(18Q23) WILD-TYPE    192     61     55    121
D47V4, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         31                          192
  CLUS_2                         11                           61
  CLUS_3                          2                           55
  CLUS_4                         34                          121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED        6     13     13     10
  DEL PEAK 26(18Q23) WILD-TYPE     46     49     55     64
D47V5, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                          6                           46
  CLUS_2                         13                           49
  CLUS_3                         13                           55
  CLUS_4                         10                           64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(18Q23) MUTATED        6     28      8
  DEL PEAK 26(18Q23) WILD-TYPE     61    103     50
D47V6, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                          6                           61
  CLUS_2                         28                          103
  CLUS_3                          8                           50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(18Q23) MUTATED       19     17     23     16      3
  DEL PEAK 26(18Q23) WILD-TYPE    116     95     85    111     25
D47V7, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         19                          116
  CLUS_2                         17                           95
  CLUS_3                         23                           85
  CLUS_4                         16                          111
  CLUS_5                          3                           25
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       19     18     27     14
  DEL PEAK 26(18Q23) WILD-TYPE    116     95     98    123
D47V8, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         19                          116
  CLUS_2                         18                           95
  CLUS_3                         27                           98
  CLUS_4                         14                          123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       23     14     24     16
  DEL PEAK 26(18Q23) WILD-TYPE    113     90    163     56
D47V9, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         23                          113
  CLUS_2                         14                           90
  CLUS_3                         24                          163
  CLUS_4                         16                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       25     21     16     15
  DEL PEAK 26(18Q23) WILD-TYPE    130     86    121     85
D47V10, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         25                          130
  CLUS_2                         21                           86
  CLUS_3                         16                          121
  CLUS_4                         15                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 26(18Q23) MUTATED       18     11     16     22      4      3      3
  DEL PEAK 26(18Q23) WILD-TYPE     95     83     53    124     30     15     22
D47V11, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         18                           95
  CLUS_2                         11                           83
  CLUS_3                         16                           53
  CLUS_4                         22                          124
  CLUS_5                          4                           30
  CLUS_6                          3                           15
  CLUS_7                          3                           22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(18Q23) MUTATED       25     25     13     14
  DEL PEAK 26(18Q23) WILD-TYPE    123    116     99     84
D47V12, multiclass
        clus
vv       DEL PEAK 26(18Q23) MUTATED DEL PEAK 26(18Q23) WILD-TYPE
  CLUS_1                         25                          123
  CLUS_2                         25                          116
  CLUS_3                         13                           99
  CLUS_4                         14                           84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 27(19Q13.42) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.42) MUTATED        7     10      4
  DEL PEAK 27(19Q13.42) WILD-TYPE      2      0      4
D48V1, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                             7                               2
  CLUS_2                            10                               0
  CLUS_3                             4                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED        4      7      7      3
  DEL PEAK 27(19Q13.42) WILD-TYPE      3      0      0      3
D48V2, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                             4                               3
  CLUS_2                             7                               0
  CLUS_3                             7                               0
  CLUS_4                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.42) MUTATED       58     36    184
  DEL PEAK 27(19Q13.42) WILD-TYPE    110     82     42
D48V3, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            58                             110
  CLUS_2                            36                              82
  CLUS_3                           184                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       88     11     21    155
  DEL PEAK 27(19Q13.42) WILD-TYPE    135     61     36      0
D48V4, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            88                             135
  CLUS_2                            11                              61
  CLUS_3                            21                              36
  CLUS_4                           155                               0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       17     29     40     48
  DEL PEAK 27(19Q13.42) WILD-TYPE     35     33     28     26
D48V5, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            17                              35
  CLUS_2                            29                              33
  CLUS_3                            40                              28
  CLUS_4                            48                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.42) MUTATED       34     66     34
  DEL PEAK 27(19Q13.42) WILD-TYPE     33     65     24
D48V6, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            34                              33
  CLUS_2                            66                              65
  CLUS_3                            34                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(19Q13.42) MUTATED       49     35    108     73     12
  DEL PEAK 27(19Q13.42) WILD-TYPE     86     77      0     54     16
D48V7, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            49                              86
  CLUS_2                            35                              77
  CLUS_3                           108                               0
  CLUS_4                            73                              54
  CLUS_5                            12                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       46     33    124     74
  DEL PEAK 27(19Q13.42) WILD-TYPE     89     80      1     63
D48V8, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            46                              89
  CLUS_2                            33                              80
  CLUS_3                           124                               1
  CLUS_4                            74                              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       56     38    112     65
  DEL PEAK 27(19Q13.42) WILD-TYPE     80     66     75      7
D48V9, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            56                              80
  CLUS_2                            38                              66
  CLUS_3                           112                              75
  CLUS_4                            65                               7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       78     93     78     22
  DEL PEAK 27(19Q13.42) WILD-TYPE     77     14     59     78
D48V10, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            78                              77
  CLUS_2                            93                              14
  CLUS_3                            78                              59
  CLUS_4                            22                              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(19Q13.42) MUTATED       46     32     67     87     19      6
  DEL PEAK 27(19Q13.42) WILD-TYPE     67     62      2     59     15     12
                                 vv
clus                              CLUS_7
  DEL PEAK 27(19Q13.42) MUTATED       14
  DEL PEAK 27(19Q13.42) WILD-TYPE     11
D48V11, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            46                              67
  CLUS_2                            32                              62
  CLUS_3                            67                               2
  CLUS_4                            87                              59
  CLUS_5                            19                              15
  CLUS_6                             6                              12
  CLUS_7                            14                              11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.42) MUTATED       73    110     71     17
  DEL PEAK 27(19Q13.42) WILD-TYPE     75     31     41     81
D48V12, multiclass
        clus
vv       DEL PEAK 27(19Q13.42) MUTATED DEL PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            73                              75
  CLUS_2                           110                              31
  CLUS_3                            71                              41
  CLUS_4                            17                              81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 28(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(22Q13.31) MUTATED        4      1      1
  DEL PEAK 28(22Q13.31) WILD-TYPE      5      9      7
D49V1, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                             1                               9
  CLUS_3                             1                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED        2      4      0      0
  DEL PEAK 28(22Q13.31) WILD-TYPE      5      3      7      6
D49V2, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                             2                               5
  CLUS_2                             4                               3
  CLUS_3                             0                               7
  CLUS_4                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(22Q13.31) MUTATED       39     34      4
  DEL PEAK 28(22Q13.31) WILD-TYPE    129     84    222
D49V3, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            39                             129
  CLUS_2                            34                              84
  CLUS_3                             4                             222
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       39     25      8      4
  DEL PEAK 28(22Q13.31) WILD-TYPE    184     47     49    151
D49V4, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            39                             184
  CLUS_2                            25                              47
  CLUS_3                             8                              49
  CLUS_4                             4                             151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED        4     21      8      6
  DEL PEAK 28(22Q13.31) WILD-TYPE     48     41     60     68
D49V5, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                             4                              48
  CLUS_2                            21                              41
  CLUS_3                             8                              60
  CLUS_4                             6                              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(22Q13.31) MUTATED        4     28      7
  DEL PEAK 28(22Q13.31) WILD-TYPE     63    103     51
D49V6, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                             4                              63
  CLUS_2                            28                             103
  CLUS_3                             7                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(22Q13.31) MUTATED       15     40      2     14      5
  DEL PEAK 28(22Q13.31) WILD-TYPE    120     72    106    113     23
D49V7, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            15                             120
  CLUS_2                            40                              72
  CLUS_3                             2                             106
  CLUS_4                            14                             113
  CLUS_5                             5                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       17     39      4     16
  DEL PEAK 28(22Q13.31) WILD-TYPE    118     74    121    121
D49V8, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            17                             118
  CLUS_2                            39                              74
  CLUS_3                             4                             121
  CLUS_4                            16                             121
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       26     20     22      6
  DEL PEAK 28(22Q13.31) WILD-TYPE    110     84    165     66
D49V9, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            26                             110
  CLUS_2                            20                              84
  CLUS_3                            22                             165
  CLUS_4                             6                              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       22      7     16     29
  DEL PEAK 28(22Q13.31) WILD-TYPE    133    100    121     71
D49V10, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            22                             133
  CLUS_2                             7                             100
  CLUS_3                            16                             121
  CLUS_4                            29                              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(22Q13.31) MUTATED       15     28      6     16      2      4
  DEL PEAK 28(22Q13.31) WILD-TYPE     98     66     63    130     32     14
                                 vv
clus                              CLUS_7
  DEL PEAK 28(22Q13.31) MUTATED        3
  DEL PEAK 28(22Q13.31) WILD-TYPE     22
D49V11, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            15                              98
  CLUS_2                            28                              66
  CLUS_3                             6                              63
  CLUS_4                            16                             130
  CLUS_5                             2                              32
  CLUS_6                             4                              14
  CLUS_7                             3                              22
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(22Q13.31) MUTATED       23      9     11     31
  DEL PEAK 28(22Q13.31) WILD-TYPE    125    132    101     67
D49V12, multiclass
        clus
vv       DEL PEAK 28(22Q13.31) MUTATED DEL PEAK 28(22Q13.31) WILD-TYPE
  CLUS_1                            23                             125
  CLUS_2                             9                             132
  CLUS_3                            11                             101
  CLUS_4                            31                              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 29(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED        1      2      2
  DEL PEAK 29(XQ21.1) WILD-TYPE      8      8      6
D50V1, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             8
  CLUS_3                           2                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED        1      3      0      1
  DEL PEAK 29(XQ21.1) WILD-TYPE      6      4      7      5
D50V2, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           3                             4
  CLUS_3                           0                             7
  CLUS_4                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED       32     14     32
  DEL PEAK 29(XQ21.1) WILD-TYPE    136    104    194
D50V3, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          32                           136
  CLUS_2                          14                           104
  CLUS_3                          32                           194
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       38      8      2     30
  DEL PEAK 29(XQ21.1) WILD-TYPE    185     64     55    125
D50V4, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          38                           185
  CLUS_2                           8                            64
  CLUS_3                           2                            55
  CLUS_4                          30                           125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED        7     14      7      5
  DEL PEAK 29(XQ21.1) WILD-TYPE     45     48     61     69
D50V5, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                          14                            48
  CLUS_3                           7                            61
  CLUS_4                           5                            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(XQ21.1) MUTATED        7     22      4
  DEL PEAK 29(XQ21.1) WILD-TYPE     60    109     54
D50V6, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                          22                           109
  CLUS_3                           4                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(XQ21.1) MUTATED       14     24     24     15      1
  DEL PEAK 29(XQ21.1) WILD-TYPE    121     88     84    112     27
D50V7, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          14                           121
  CLUS_2                          24                            88
  CLUS_3                          24                            84
  CLUS_4                          15                           112
  CLUS_5                           1                            27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       13     25     28     12
  DEL PEAK 29(XQ21.1) WILD-TYPE    122     88     97    125
D50V8, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          13                           122
  CLUS_2                          25                            88
  CLUS_3                          28                            97
  CLUS_4                          12                           125
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       13     18     24     20
  DEL PEAK 29(XQ21.1) WILD-TYPE    123     86    163     52
D50V9, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          13                           123
  CLUS_2                          18                            86
  CLUS_3                          24                           163
  CLUS_4                          20                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       21     25     11     18
  DEL PEAK 29(XQ21.1) WILD-TYPE    134     82    126     82
D50V10, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          21                           134
  CLUS_2                          25                            82
  CLUS_3                          11                           126
  CLUS_4                          18                            82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(XQ21.1) MUTATED       11     13     19     16      7      7
  DEL PEAK 29(XQ21.1) WILD-TYPE    102     81     50    130     27     11
                               vv
clus                            CLUS_7
  DEL PEAK 29(XQ21.1) MUTATED        2
  DEL PEAK 29(XQ21.1) WILD-TYPE     23
D50V11, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          11                           102
  CLUS_2                          13                            81
  CLUS_3                          19                            50
  CLUS_4                          16                           130
  CLUS_5                           7                            27
  CLUS_6                           7                            11
  CLUS_7                           2                            23
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(XQ21.1) MUTATED       21     29      7     18
  DEL PEAK 29(XQ21.1) WILD-TYPE    127    112    105     80
D50V12, multiclass
        clus
vv       DEL PEAK 29(XQ21.1) MUTATED DEL PEAK 29(XQ21.1) WILD-TYPE
  CLUS_1                          21                           127
  CLUS_2                          29                           112
  CLUS_3                           7                           105
  CLUS_4                          18                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
