Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-LK-A4NW-01A-11D-A34B-01	TCGA-LK-A4NY-01A-11D-A34B-01	TCGA-LK-A4NZ-01A-12D-A34B-01	TCGA-LK-A4O0-01A-11D-A34B-01	TCGA-LK-A4O2-01A-11D-A34B-01	TCGA-LK-A4O4-01A-11D-A34B-01	TCGA-LK-A4O5-01A-11D-A34B-01	TCGA-LK-A4O6-01A-11D-A34B-01	TCGA-LK-A4O7-01A-11D-A34B-01	TCGA-MQ-A4KX-01A-11D-A34B-01	TCGA-MQ-A4LC-01A-31D-A34B-01	TCGA-MQ-A4LI-01A-11D-A34B-01	TCGA-MQ-A4LJ-01A-11D-A34B-01	TCGA-MQ-A4LM-01A-11D-A34B-01	TCGA-MQ-A4LP-01A-11D-A34B-01	TCGA-MQ-A4LV-01A-11D-A34B-01	TCGA-MQ-A6BL-01A-11D-A34B-01	TCGA-MQ-A6BN-01A-12D-A34B-01	TCGA-MQ-A6BQ-01A-11D-A34B-01	TCGA-MQ-A6BR-01A-11D-A34B-01	TCGA-MQ-A6BS-01A-12D-A34B-01	TCGA-NQ-A57I-01A-11D-A34B-01	TCGA-NQ-A638-01A-11D-A34B-01	TCGA-SC-A6LM-01A-11D-A34B-01	TCGA-SC-A6LN-01A-11D-A34B-01	TCGA-SC-A6LP-01A-11D-A34B-01	TCGA-SC-A6LQ-01A-11D-A34B-01	TCGA-SC-A6LR-01A-11D-A34B-01	TCGA-SH-A7BC-01A-11D-A34B-01	TCGA-SH-A7BD-01A-11D-A34B-01	TCGA-SH-A7BH-01A-11D-A34B-01	TCGA-TS-A7OY-01A-11D-A34B-01	TCGA-TS-A7P0-01A-11D-A34B-01	TCGA-TS-A7P3-01A-12D-A34B-01	TCGA-TS-A7P6-01A-21D-A34B-01	TCGA-TS-A7P8-01A-11D-A34B-01	TCGA-TS-A7PB-01A-11D-A34B-01	
Amplification Peak 1	12p11.21	chr12:30605286-31010936(probes 1073882:1074146)	chr12:30606994-31009556(probes 1073883:1074145)	chr12:30606994-31011914(probes 1073883:1074148)	0.10629	 0.10629		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	
Amplification Peak 2	17q24.3 	chr17:59456590-69535200(probes 1347612:1353430)	chr17:68942216-69530657(probes 1352942:1353429)	chr17:60293421-69538429(probes 1348016:1353432)	0.07091	 0.07091		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	1	0	1	0	0	0	0	0	0	1	0	0	0	0	2	0	0	1	0	1	1	1	0	0	0	0	1	1	0	0	0	0	0	1	0	0	
Amplification Peak 3	19q13.43	chr19:58648280-59128983(probes 1425046:1425176)	chr19:58648360-59128983(probes 1425047:1425176)	chr19:58648360-59128983(probes 1425047:1425176)	0.24013	 0.24013		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	
Amplification Peak 4	20p12.1 	chr20:17384587-17397548(probes 1436169:1436177)	chr20:17387641-17390059(probes 1436170:1436176)	chr20:17387641-17399372(probes 1436170:1436179)	0.1592	  0.1592		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  1	1p36.23 	chr1:1-35137980(probes 1:16820)                    	chr1:5922079-11992183(probes 1809:4881)              	chr1:1-28233550(probes 1:13161)                      	0.006984	   0.057934		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	1	0	1	1	1	0	0	1	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	1	0	0	1	1	0	1	0	0	
Deletion Peak  2	1p22.1  	chr1:77746246-118172220(probes 42274:66460)      	chr1:92099742-95947336(probes 51211:53474)          	chr1:78108374-118042756(probes 42533:66370)        	0.00045401	  0.0018908		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	1	0	0	1	1	0	1	1	1	0	1	0	1	0	0	0	1	0	0	1	1	0	0	0	0	1	0	0	0	1	1	0	1	
Deletion Peak  3	2q35    	chr2:181840208-243199373(probes 226443:260559)  	chr2:215592907-215676756(probes 244155:244212)    	chr2:215629031-215629409(probes 244184:244185)    	0.21123	    0.21973		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	
Deletion Peak  4	3p21.1  	chr3:52423190-52468508(probes 289238:289252)      	chr3:52431758-52447104(probes 289239:289245)        	chr3:30645427-68224679(probes 277371:299209)        	1.9424e-10	 1.9424e-10		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	0	1	0	0	1	0	1	1	0	0	0	1	0	0	1	
Deletion Peak  5	4q26    	chr4:115598111-117226382(probes 430620:431452)  	chr4:115742599-116044677(probes 430689:430874)    	chr4:115602051-116495701(probes 430623:431113)    	0.0063018	  0.0065557		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	1	0	1	1	1	0	0	1	0	1	1	1	1	0	0	1	1	0	0	0	1	0	0	0	1	0	1	1	1	0	1	0	0	
Deletion Peak  6	5q23.2  	chr5:101702788-132953522(probes 523130:541245)  	chr5:122176246-122351492(probes 535016:535112)    	chr5:122262390-122264800(probes 535065:535066)    	0.018775	   0.019054		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	1	0	0	1	0	0	1	0	0	0	0	
Deletion Peak  7	6q22.31 	chr6:100835058-163737599(probes 625490:663530)  	chr6:123668686-123960706(probes 638359:638475)    	chr6:109522052-151009189(probes 630501:655373)    	0.021347	   0.020061		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	1	0	0	0	1	1	1	1	0	1	0	0	1	1	1	0	1	1	1	0	0	0	0	0	1	1	0	0	1	0	1	0	1	
Deletion Peak  8	9p21.3  	chr9:21865498-22448737(probes 843243:843607)      	chr9:21959052-21997722(probes 843294:843307)        	chr9:19749747-29449146(probes 841725:847621)        	1.3279e-28	 1.3279e-28		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	0	1	0	1	0	0	1	1	1	1	1	1	0	0	0	1	1	1	1	1	1	1	0	1	0	0	1	1	0	1	0	0	
Deletion Peak  9	10p15.1 	chr10:1-15904270(probes 897857:909116)             	chr10:4865623-4891167(probes 900723:900751)          	chr10:1-6615327(probes 897857:901956)                 	0.040627	   0.039021		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	1	0	1	1	0	
Deletion Peak 10	10q22.3 	chr10:76788059-89611620(probes 941725:950056)    	chr10:80824690-81077811(probes 944759:944966)      	chr10:80942632-80945087(probes 944863:944864)      	0.22469	    0.22419		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	
Deletion Peak 11	10q24.1 	chr10:93165832-135534747(probes 952580:978759)  	chr10:98588340-98727430(probes 955579:955640)      	chr10:98627051-98670760(probes 955599:955614)      	0.01001	  0.0097964		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	1	1	1	1	0	0	0	0	0	1	1	0	0	0	1	1	1	
Deletion Peak 12	13q13.3 	chr13:1-76435634(probes 1130023:1162667)         	chr13:29596702-49003156(probes 1135862:1148813)    	chr13:29717511-29917863(probes 1135948:1136119)    	0.049605	   0.048936		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	1	1	0	1	0	0	1	1	1	1	1	1	1	1	0	0	0	1	0	0	0	1	1	0	0	1	1	1	1	1	0	1	0	0	
Deletion Peak 13	14q11.2 	chr14:1-23134074(probes 1186696:1187584)         	chr14:20698299-20715824(probes 1186818:1186822)    	chr14:20711812-20715824(probes 1186821:1186822)    	0.12083	    0.12319		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	1	1	1	0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	1	0	1	1	1	0	1	1	0	
Deletion Peak 14	14q32.31	chr14:78865413-107349540(probes 1219670:1236165)	chr14:101490080-101493684(probes 1234308:1234314)	chr14:101491346-101492733(probes 1234309:1234310)	0.023803	   0.024883		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	1	0	1	1	1	0	0	1	1	0	0	0	0	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	1	0	1	1	0	
Deletion Peak 15	15q15.1 	chr15:1-45063816(probes 1236166:1246589)         	chr15:40672487-40767738(probes 1244652:1244696)    	chr15:1-47676518(probes 1236166:1248036)           	4.6583e-05	 4.3197e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	1	1	1	0	1	0	0	0	1	0	1	0	1	0	1	0	0	
Deletion Peak 16	16p13.3 	chr16:5144019-7771745(probes 1282382:1283881)      	chr16:6066397-7771745(probes 1283019:1283881)        	chr16:7369731-7376241(probes 1283451:1283452)        	0.00078859	 0.00078922		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 17	16q21   	chr16:1-90354753(probes 1280716:1321528)           	chr16:61684449-62071400(probes 1304402:1304653)    	chr16:61486465-62834649(probes 1304291:1305148)    	0.061167	    0.23924		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	1	0	0	0	1	1	1	1	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 18	16q24.1 	chr16:69976034-90354753(probes 1309291:1321528)  	chr16:86316718-86381370(probes 1319989:1320048)    	chr16:78283689-90354753(probes 1314077:1321528)    	0.0065557	   0.015326		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	0	0	0	1	0	0	0	1	1	0	1	1	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 19	22q12.2 	chr22:29969457-30128393(probes 1487884:1487950)  	chr22:29984760-30102685(probes 1487891:1487940)    	chr22:30012782-30068065(probes 1487898:1487926)    	0.099026	    0.10027		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	1	0	1	1	1	0	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	0	1	0	1	1	0	1	1	1	1	1	1	
Amplification Peak 1 - CN values	12p11.21	chr12:30605286-31010936(probes 1073882:1074146)	chr12:30606994-31009556(probes 1073883:1074145)	chr12:30606994-31011914(probes 1073883:1074148)	0.10629	 0.10629		Actual Copy Change Given	0.91117	0.0015255	-0.0038779	0.23349	0.12285	-0.0008316	0.12309	-0.0015243	0.017463	0.21637	0.0034687	0.02334	0.0075	0.04979	0.0069435	0.022865	0.0024969	-0.00076219	-0.0011087	0.0023581	0.18041	2.7757	0.028124	-0.00027724	0.021043	0.023145	0.086522	-0.026988	0.24762	0.0021132	-0.52389	0.014807	0.53257	-0.0013858	0.22993	0.00022139	0.0055529	
Amplification Peak 2 - CN values	17q24.3 	chr17:59456590-69535200(probes 1347612:1353430)	chr17:68942216-69530657(probes 1352942:1353429)	chr17:60293421-69538429(probes 1348016:1353432)	0.07091	 0.07091		Actual Copy Change Given	0.49488	0.56869	0.0038854	0.19178	-0.0038779	-0.0037395	0.044953	-0.00027724	-0.0072751	-0.012713	0.56595	0.013267	-0.0056757	0.01751	-0.051316	2.2927	-0.032178	0.014609	0.66106	-0.0038802	0.21024	0.38634	0.42864	0.025671	-0.022469	0.0026371	0.068378	0.46502	0.19725	-0.025587	-0.55437	0.0018654	0.087245	0.016146	0.15159	0.0072515	0.0072293	
Amplification Peak 3 - CN values	19q13.43	chr19:58648280-59128983(probes 1425046:1425176)	chr19:58648360-59128983(probes 1425047:1425176)	chr19:58648360-59128983(probes 1425047:1425176)	0.24013	 0.24013		Actual Copy Change Given	0.017404	-0.039801	0.022164	0.12579	-0.12992	-0.0030475	0.090963	0.0051359	-0.046525	-0.018765	-0.049965	-0.023102	-0.015604	0	2.6605	-0.040944	-0.034086	0.0090312	-0.61681	0.0041632	-0.36669	-0.2491	0.24209	-0.60487	-0.048748	0.016425	0.079735	-0.039935	0.080312	-0.045603	0.39612	-0.0036814	-0.033132	0.0080771	0.08392	-0.0026443	-0.023018	
Amplification Peak 4 - CN values	20p12.1 	chr20:17384587-17397548(probes 1436169:1436177)	chr20:17387641-17390059(probes 1436170:1436176)	chr20:17387641-17399372(probes 1436170:1436179)	0.1592	  0.1592		Actual Copy Change Given	-0.49246	1.8581	-0.0049844	-0.28572	-0.015311	0.0012481	-0.61856	0.028903	-0.02734	-0.015663	1.6038	0.055713	0.00055459	0.03676	-0.018765	0	0.16024	0.0041632	-0.64781	-0.024251	-0.38276	0.13524	0.012301	0.018243	-0.57011	-0.0076101	0.098706	-0.035959	-0.052126	-0.029591	-0.026714	-0.0039582	-0.31225	0.0066653	0	0.0077783	0.00073748	
Deletion Peak  1 - CN values	1p36.23 	chr1:1-35137980(probes 1:16820)                    	chr1:5922079-11992183(probes 1809:4881)              	chr1:1-28233550(probes 1:13161)                      	0.006984	   0.057934		Actual Copy Change Given	0.0013868	-0.71146	-0.39163	-0.3203	-0.14425	0	-0.5596	-0.28786	-0.7166	-0.0016629	-0.050506	-0.61457	-0.013815	-0.2918	-0.043807	-0.010508	-0.2926	0.032845	0.0026357	-0.00055444	-0.37035	0.064654	-0.43317	0.030029	-0.57088	0.015168	-0.053071	-0.038858	-0.35396	-0.0089582	0.4113	-0.28544	-0.635	0.031999	-0.51753	-0.035993	-0.0029024	
Deletion Peak  2 - CN values	1p22.1  	chr1:77746246-118172220(probes 42274:66460)      	chr1:92099742-95947336(probes 51211:53474)          	chr1:78108374-118042756(probes 42533:66370)        	0.00045401	  0.0018908		Actual Copy Change Given	0.0013868	-0.69685	0.00097064	-0.27188	-0.52069	0	-0.043713	-0.28786	-0.7166	-0.0016629	-0.60806	-0.61457	-0.69575	0.036619	-0.71426	-0.010508	-0.2926	0.0037095	0.0026357	-0.00055444	-0.40665	0.020634	0.030938	-0.61213	-0.57088	0.015168	-0.053071	-0.02384	0.39878	-0.8282	0.45309	-0.0003577	0.030029	-0.39129	-0.44663	-0.035993	-0.59478	
Deletion Peak  3 - CN values	2q35    	chr2:181840208-243199373(probes 226443:260559)  	chr2:215592907-215676756(probes 244155:244212)    	chr2:215629031-215629409(probes 244184:244185)    	0.21123	    0.21973		Actual Copy Change Given	0.0086135	-0.6857	0.0041632	-0.13446	-0.33475	0	-0.40764	-0.0028797	0.015057	0.0087528	0.0054504	-0.13944	0	-0.0011421	-0.0048461	0.0097276	0.01433	-0.0012473	-0.0079753	0	0.12314	-0.0080756	-0.011111	0.00027728	0.012934	-0.0098185	-0.34102	0	0.037217	0.012269	-0.49267	0	-0.021098	-0.0055375	-0.44286	-0.052531	-0.0059522	
Deletion Peak  4 - CN values	3p21.1  	chr3:52423190-52468508(probes 289238:289252)      	chr3:52431758-52447104(probes 289239:289245)        	chr3:30645427-68224679(probes 277371:299209)        	1.9424e-10	 1.9424e-10		Actual Copy Change Given	-0.48785	0.0074773	-0.38392	0.22675	-0.54007	0.0026357	-0.50363	-0.29473	-0.6951	-0.40937	-0.63755	0.042787	-0.011411	-0.63218	-0.73134	-0.39497	-0.27953	-0.67582	-0.00055444	0.0026357	-0.33837	-0.29137	0.034178	-1.2026	0.024268	-0.0051227	-0.67297	1.1181	-0.31587	-1.2929	0.52136	0.0069526	0.073258	-0.39619	0.23086	0.050108	-1.2015	
Deletion Peak  5 - CN values	4q26    	chr4:115598111-117226382(probes 430620:431452)  	chr4:115742599-116044677(probes 430689:430874)    	chr4:115602051-116495701(probes 430623:431113)    	0.0063018	  0.0065557		Actual Copy Change Given	-0.024935	-0.068261	0	-0.26751	-0.50391	0.0012481	-0.14211	-0.29556	-0.68811	0.0019418	0.025134	-0.63298	0.010424	-0.27167	-0.71033	-0.38481	-0.19812	-0.0034627	-0.0040162	-0.56137	-0.41069	0.30813	0.040816	-0.0076101	-0.53276	-0.028624	-0.058193	-0.021647	-0.13846	0.018696	-0.52495	-0.19182	-0.33738	-0.0030475	-1.1493	-0.06786	0.0020805	
Deletion Peak  6 - CN values	5q23.2  	chr5:101702788-132953522(probes 523130:541245)  	chr5:122176246-122351492(probes 535016:535112)    	chr5:122262390-122264800(probes 535065:535066)    	0.018775	   0.019054		Actual Copy Change Given	-0.01904	0.008892	0.004719	0.24716	0.025653	0.0022193	-0.049062	0.0059559	-0.70267	0.0070826	0.012237	0.03586	0.0011093	0.044114	0.013632	-0.11378	0.022304	-0.00097017	0.0011093	1.1399	-0.41465	0.018103	0.040674	-0.0067294	-0.54734	0.36756	-0.16064	0.59296	0.027357	-0.82999	0.50012	0.0070019	-0.33006	0.00458	-0.094377	0.016705	0.0044411	
Deletion Peak  7 - CN values	6q22.31 	chr6:100835058-163737599(probes 625490:663530)  	chr6:123668686-123960706(probes 638359:638475)    	chr6:109522052-151009189(probes 630501:655373)    	0.021347	   0.020061		Actual Copy Change Given	-0.019726	-0.69785	-0.39231	-0.20747	-0.51753	-0.00041585	0.026328	0	-0.69808	-0.39475	-0.60767	-0.14183	-0.00061979	-0.2761	0.0090312	0.024268	-0.26612	-0.68679	-0.65818	0.012934	-0.43218	-0.30557	-0.36539	0	0.021183	0.00013863	0.087824	-0.022881	-0.28408	-0.82836	0.021884	0.0065846	-0.33376	0	-0.42974	0.012883	-0.59643	
Deletion Peak  8 - CN values	9p21.3  	chr9:21865498-22448737(probes 843243:843607)      	chr9:21959052-21997722(probes 843294:843307)        	chr9:19749747-29449146(probes 841725:847621)        	1.3279e-28	 1.3279e-28		Actual Copy Change Given	-0.93364	-1.2929	-0.0019603	-0.76201	-1.0102	-0.0040162	-1.1681	0.094841	-1.2929	-0.0012473	0.0022193	-1.2929	-1.2929	-0.60837	-1.2929	-0.80484	-0.53388	0.00027728	0.0011093	0.010564	-0.38188	-0.28655	-1.2929	-1.1249	-1.0557	-0.89725	-0.70899	0.48992	-0.85202	0	-0.00041585	-0.1235	-0.66661	-0.0029091	-1.0457	-0.025346	-0.037762	
Deletion Peak  9 - CN values	10p15.1 	chr10:1-15904270(probes 897857:909116)             	chr10:4865623-4891167(probes 900723:900751)          	chr10:1-6615327(probes 897857:901956)                 	0.040627	   0.039021		Actual Copy Change Given	-0.0092666	-0.69986	0.00027728	0.19999	-0.54229	-0.0041546	0.0485	0.00041593	-0.36969	-0.0012473	-0.0096806	0.034591	0.0024969	-0.28289	-0.73301	-0.40196	0.0027745	0.008892	0.0073609	0.0048579	-0.38828	-0.28096	-0.52223	0.011679	0.0032107	-0.0059522	-0.056758	-0.031468	-0.032587	0.0026684	-0.54532	0.0025551	-0.69803	-0.018078	-0.7172	-0.11024	-0.032723	
Deletion Peak 10 - CN values	10q22.3 	chr10:76788059-89611620(probes 941725:950056)    	chr10:80824690-81077811(probes 944759:944966)      	chr10:80942632-80945087(probes 944863:944864)      	0.22469	    0.22419		Actual Copy Change Given	-0.0092666	-0.033677	0.00027728	0.20427	0	0.0019418	0.0485	0.00041593	-0.36969	-0.0012473	-0.0096806	0.034591	0.0024969	0.051353	-0.73301	0.016985	0.0027745	0.012097	0.0073609	0.00016542	-0.38828	-0.2881	-0.047604	0.026092	0.0079175	-0.0059522	-0.061152	-0.026167	-0.027398	0.0026684	-0.54573	0.0025551	0.017963	-0.018078	-0.12823	-0.11024	-0.032723	
Deletion Peak 11 - CN values	10q24.1 	chr10:93165832-135534747(probes 952580:978759)  	chr10:98588340-98727430(probes 955579:955640)      	chr10:98627051-98670760(probes 955599:955614)      	0.01001	  0.0097964		Actual Copy Change Given	-0.0092666	-0.69178	0.00027728	0.20427	0	0.0019418	0.0485	0.00041593	-0.36969	-0.0012473	-0.0096806	0.034591	0.0024969	0.051353	-0.73301	-0.39464	0.0027745	0.012097	0.0073609	0.00016542	-0.38828	-1.2929	-0.50583	-0.59818	0.0079175	-0.0059522	-0.061152	-0.026167	-0.027398	-0.83936	-0.54573	-0.01311	0.010564	-0.018078	-0.12823	-0.11024	-0.36624	
Deletion Peak 12 - CN values	13q13.3 	chr13:1-76435634(probes 1130023:1162667)         	chr13:29596702-49003156(probes 1135862:1148813)    	chr13:29717511-29917863(probes 1135948:1136119)    	0.049605	   0.048936		Actual Copy Change Given	-0.50183	0.017264	-0.0012473	-0.26035	-0.5395	-0.0022168	-0.14404	-0.021921	0.02209	-0.38728	-0.60266	-0.63506	-0.68924	-0.2763	-0.74681	-0.37943	-0.27392	-0.0095426	-0.0053992	0.0058309	-0.36969	0.053664	0.010371	-0.005261	-0.53926	-0.10237	0.05025	-0.017666	-0.29945	-0.8256	-0.53134	-0.27279	-0.11926	-0.007472	-0.44384	-0.088507	0.0022193	
Deletion Peak 13 - CN values	14q11.2 	chr14:1-23134074(probes 1186696:1187584)         	chr14:20698299-20715824(probes 1186818:1186822)    	chr14:20711812-20715824(probes 1186821:1186822)    	0.12083	    0.12319		Actual Copy Change Given	-0.021921	-0.0027707	-0.00097017	0.24389	-0.5065	-0.0037395	-0.59453	-0.29248	-0.71029	0.0052749	-0.0027707	-0.64176	-0.69676	0.033515	-0.039258	0.016286	0.0043021	0.0029133	0.00027728	0.0076392	-0.38783	0.41304	-0.85952	0.0114	-0.55377	-0.0085766	-0.1837	-0.029038	-0.31774	0.0007259	-0.52808	-0.26932	-0.65892	-0.010646	-0.4086	-0.1067	0	
Deletion Peak 14 - CN values	14q32.31	chr14:78865413-107349540(probes 1219670:1236165)	chr14:101490080-101493684(probes 1234308:1234314)	chr14:101491346-101492733(probes 1234309:1234310)	0.023803	   0.024883		Actual Copy Change Given	-0.0029091	-0.70618	-0.00097017	-0.28608	-0.52909	-0.0037395	-0.58503	-0.29424	-0.73945	0.0052749	-0.0027707	-0.64176	-0.70878	-0.013025	-0.01904	0.0051981	-0.017941	0.0029133	-0.64198	0.0076392	-0.38783	0.50509	-0.40943	0.0114	-0.58054	-0.0085766	-0.1837	-0.029038	-0.31774	-0.019007	-1.2929	-0.53754	-0.65892	0.0084743	-0.41289	-0.1067	0	
Deletion Peak 15 - CN values	15q15.1 	chr15:1-45063816(probes 1236166:1246589)         	chr15:40672487-40767738(probes 1244652:1244696)    	chr15:1-47676518(probes 1236166:1248036)           	4.6583e-05	 4.3197e-05		Actual Copy Change Given	0.0079175	-0.70845	-0.0012473	-0.28489	-0.0047079	0	0.049778	0.001803	0.010623	-0.0073339	-0.012851	-0.097181	-0.69785	-0.0026656	-0.73293	-0.12655	-0.014221	-0.6836	0.005164	-0.0012473	-0.39241	-0.27755	-0.41097	0.026092	-1.2183	0.026935	0.080456	0.48234	-0.56763	-0.01392	-0.54047	0.0047773	-0.94861	0.013213	-0.48428	-0.0020784	-0.00055444	
Deletion Peak 16 - CN values	16p13.3 	chr16:5144019-7771745(probes 1282382:1283881)      	chr16:6066397-7771745(probes 1283019:1283881)        	chr16:7369731-7376241(probes 1283451:1283452)        	0.00078859	 0.00078922		Actual Copy Change Given	0.010842	-0.0062286	-0.0020784	-0.28404	-0.034426	-0.00041585	0.062891	0.0072217	-0.014307	-0.0088526	-0.022332	0.66131	1.1457	-0.28919	-0.017666	0.0083351	-0.017041	0.0087528	0.016185	-1.2497	0.76772	0.12963	0.33132	0.035524	-0.013815	0.045991	-0.016979	0.87084	0.20366	-0.039633	0.46229	-0.0076903	0.2442	0.0095883	0.22484	0.0062481	-0.014228	
Deletion Peak 17 - CN values	16q21   	chr16:1-90354753(probes 1280716:1321528)           	chr16:61684449-62071400(probes 1304402:1304653)    	chr16:61486465-62834649(probes 1304291:1305148)    	0.061167	    0.23924		Actual Copy Change Given	0.0026357	-0.0062286	-0.0020784	-0.26588	0.16385	-0.00041585	0.038584	-0.28667	0.00061361	-0.0088526	-0.022332	-0.62842	-0.67435	-0.60605	-0.73836	-0.40086	-0.017041	0.0087528	0.0086135	-0.002903	-0.95529	0.12963	-0.41383	0.027654	-0.013815	0.045991	0.12727	0.91966	0.20366	-0.018046	0.46229	-0.0076903	0.09011	0.0095883	0.22484	0.0062481	-0.014228	
Deletion Peak 18 - CN values	16q24.1 	chr16:69976034-90354753(probes 1309291:1321528)  	chr16:86316718-86381370(probes 1319989:1320048)    	chr16:78283689-90354753(probes 1314077:1321528)    	0.0065557	   0.015326		Actual Copy Change Given	-0.4672	-0.73187	-0.0029724	-0.83365	0.16385	-0.00041585	-0.057954	-0.28667	0.00061361	-0.0088526	-0.022332	-0.6395	-0.7271	0.042981	-0.73836	-0.40163	-0.01904	0.0087528	0.0086135	-0.010646	-0.3495	0.12963	-0.41383	0.06208	-0.013815	0.045991	-0.32263	0.91966	0.20366	-0.0316	0.47976	-0.010588	0.23194	0.0095883	0.22422	0.0062481	-0.014228	
Deletion Peak 19 - CN values	22q12.2 	chr22:29969457-30128393(probes 1487884:1487950)  	chr22:29984760-30102685(probes 1487891:1487940)    	chr22:30012782-30068065(probes 1487898:1487926)    	0.099026	    0.10027		Actual Copy Change Given	0.01447	-0.7147	-0.39219	-0.31505	-0.56932	-0.0013858	-0.56279	-0.28489	-0.74452	-0.025209	-0.13755	-0.6474	-0.72482	-0.2918	-1.2929	-0.40749	-0.035993	-0.68579	-0.64151	-0.021921	-0.50598	-0.23276	-0.42741	-0.58576	-1.1709	0.013074	-0.33318	-0.039394	-0.3468	-0.86882	0.45803	-0.28282	-0.60057	-0.38425	-0.5097	-0.14168	-0.62265	
