[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTMESO-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/MESO-TP/10668104/MESO-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/MESO-TP/10013766/transformed.cor.cli.txt"

nPatients in clinical file=37, in cluster file=37, common to both=37
[1] 23 37
[1] "AMP PEAK 1(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE 
                            10                             27 
  AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE 
                            10                             27 
[1] "AMP PEAK 2(17Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE 
                           12                            25 
  AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE 
                           12                            25 
[1] "AMP PEAK 3(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE 
                             4                             33 
  AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE 
                             4                             33 
[1] "AMP PEAK 4(20P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE 
                            4                            33 
  AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE 
                            4                            33 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            17                             20 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            17                             20 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           17                            20 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           17                            20 
[1] "DEL PEAK  3(2Q35) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                          8                          29 
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                          8                          29 
[1] "DEL PEAK  4(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           21                            16 
  DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE 
                           21                            16 
[1] "DEL PEAK  5(4Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         18                          19 
  DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE 
                         18                          19 
[1] "DEL PEAK  6(5Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE 
                            7                            30 
  DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE 
                            7                            30 
[1] "DEL PEAK  7(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE 
                            20                             17 
  DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE 
                            20                             17 
[1] "DEL PEAK  8(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE 
                           23                            14 
  DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE 
                           23                            14 
[1] "DEL PEAK  9(10P15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE 
                            13                             24 
  DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE 
                            13                             24 
[1] "DEL PEAK 10(10Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE 
                             7                             30 
  DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE 
                             7                             30 
[1] "DEL PEAK 11(10Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE 
                            13                             24 
  DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE 
                            13                             24 
[1] "DEL PEAK 12(13Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE 
                            21                             16 
  DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE 
                            21                             16 
[1] "DEL PEAK 13(14Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE 
                            16                             21 
  DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE 
                            16                             21 
[1] "DEL PEAK 14(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE 
                             19                              18 
  DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE 
                             19                              18 
[1] "DEL PEAK 15(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE 
                            14                             23 
  DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE 
                            14                             23 
[1] "DEL PEAK 16(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE 
                             3                             34 
  DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE 
                             3                             34 
[1] "DEL PEAK 17(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE 
                           9                           28 
  DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE 
                           9                           28 
[1] "DEL PEAK 18(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE 
                            11                             26 
  DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE 
                            11                             26 
[1] "DEL PEAK 19(22Q12.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE 
                            29                              8 
  DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE 
                            29                              8 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 37 columns.

Variable 1:'CN_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 37 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=2, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=2, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(12P11.21) MUTATION ANALYSIS
D1V1, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    8  2
  AMP PEAK 1(12P11.21) WILD-TYPE  8 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      8    2
  AMP PEAK 1(12P11.21) WILD-TYPE    8   19
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            8                              8
  CLUS_2                            2                             19
[1] 2 2
[1] FALSE
D1V2, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    4  6
  AMP PEAK 1(12P11.21) WILD-TYPE 16 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      4    6
  AMP PEAK 1(12P11.21) WILD-TYPE   16   11
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            6                             11
[1] 2 2
[1] FALSE
D1V3, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    4  6
  AMP PEAK 1(12P11.21) WILD-TYPE 14 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      4    6
  AMP PEAK 1(12P11.21) WILD-TYPE   14   12
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            6                             12
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(12P11.21) MUTATED        5      3      2
  AMP PEAK 1(12P11.21) WILD-TYPE      8      7     11
D1V4, multiclass
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            5                              8
  CLUS_2                            3                              7
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V5, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    4  3
  AMP PEAK 1(12P11.21) WILD-TYPE 12  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      4    3
  AMP PEAK 1(12P11.21) WILD-TYPE   12    7
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            3                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(12P11.21) MUTATED        2      2      2      1      0      0
  AMP PEAK 1(12P11.21) WILD-TYPE      2      2      3      4      2      4
                                vv
clus                             CLUS_7
  AMP PEAK 1(12P11.21) MUTATED        0
  AMP PEAK 1(12P11.21) WILD-TYPE      2
D1V6, multiclass
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            2                              2
  CLUS_2                            2                              2
  CLUS_3                            2                              3
  CLUS_4                            1                              4
  CLUS_5                            0                              2
  CLUS_6                            0                              4
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V7, binary
                                cls
clus                              0  1
  AMP PEAK 1(12P11.21) MUTATED    3  4
  AMP PEAK 1(12P11.21) WILD-TYPE 11  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 1(12P11.21) MUTATED      3    4
  AMP PEAK 1(12P11.21) WILD-TYPE   11    8
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              8
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(12P11.21) MUTATED        1      2      2      1      0      1
  AMP PEAK 1(12P11.21) WILD-TYPE      2      2      5      5      2      3
D1V8, multiclass
        clus
vv       AMP PEAK 1(12P11.21) MUTATED AMP PEAK 1(12P11.21) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                            2                              2
  CLUS_3                            2                              5
  CLUS_4                            1                              5
  CLUS_5                            0                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(17Q24.3) MUTATION ANALYSIS
D2V1, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    8  4
  AMP PEAK 2(17Q24.3) WILD-TYPE  8 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      8    4
  AMP PEAK 2(17Q24.3) WILD-TYPE    8   17
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           8                             8
  CLUS_2                           4                            17
[1] 2 2
[1] FALSE
D2V2, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    7  5
  AMP PEAK 2(17Q24.3) WILD-TYPE 13 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      7    5
  AMP PEAK 2(17Q24.3) WILD-TYPE   13   12
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           7                            13
  CLUS_2                           5                            12
[1] 2 2
[1] FALSE
D2V3, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    7  5
  AMP PEAK 2(17Q24.3) WILD-TYPE 11 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      7    5
  AMP PEAK 2(17Q24.3) WILD-TYPE   11   13
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           7                            11
  CLUS_2                           5                            13
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(17Q24.3) MUTATED        4      5      3
  AMP PEAK 2(17Q24.3) WILD-TYPE      9      5     10
D2V4, multiclass
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           4                             9
  CLUS_2                           5                             5
  CLUS_3                           3                            10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V5, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    4  3
  AMP PEAK 2(17Q24.3) WILD-TYPE 12  7
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      4    3
  AMP PEAK 2(17Q24.3) WILD-TYPE   12    7
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           3                             7
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(17Q24.3) MUTATED        3      0      3      1      0      0
  AMP PEAK 2(17Q24.3) WILD-TYPE      1      4      2      4      2      4
                               vv
clus                            CLUS_7
  AMP PEAK 2(17Q24.3) MUTATED        0
  AMP PEAK 2(17Q24.3) WILD-TYPE      2
D2V6, multiclass
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           3                             1
  CLUS_2                           0                             4
  CLUS_3                           3                             2
  CLUS_4                           1                             4
  CLUS_5                           0                             2
  CLUS_6                           0                             4
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V7, binary
                               cls
clus                             0  1
  AMP PEAK 2(17Q24.3) MUTATED    3  4
  AMP PEAK 2(17Q24.3) WILD-TYPE 11  8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 2(17Q24.3) MUTATED      3    4
  AMP PEAK 2(17Q24.3) WILD-TYPE   11    8
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             8
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(17Q24.3) MUTATED        2      0      3      1      0      1
  AMP PEAK 2(17Q24.3) WILD-TYPE      1      4      4      5      2      3
D2V8, multiclass
        clus
vv       AMP PEAK 2(17Q24.3) MUTATED AMP PEAK 2(17Q24.3) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                           0                             4
  CLUS_3                           3                             4
  CLUS_4                           1                             5
  CLUS_5                           0                             2
  CLUS_6                           1                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(19Q13.43) MUTATION ANALYSIS
D3V1, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    3  1
  AMP PEAK 3(19Q13.43) WILD-TYPE 13 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      3    1
  AMP PEAK 3(19Q13.43) WILD-TYPE   13   20
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            3                             13
  CLUS_2                            1                             20
[1] 2 2
[1] FALSE
D3V2, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    2  2
  AMP PEAK 3(19Q13.43) WILD-TYPE 18 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      2    2
  AMP PEAK 3(19Q13.43) WILD-TYPE   18   15
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            2                             15
[1] 2 2
[1] FALSE
D3V3, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    1  3
  AMP PEAK 3(19Q13.43) WILD-TYPE 17 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      1    3
  AMP PEAK 3(19Q13.43) WILD-TYPE   17   15
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            1                             17
  CLUS_2                            3                             15
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(19Q13.43) MUTATED        0      1      3
  AMP PEAK 3(19Q13.43) WILD-TYPE     13      9     10
D3V4, multiclass
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            1                              9
  CLUS_3                            3                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V5, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    2  1
  AMP PEAK 3(19Q13.43) WILD-TYPE 14  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      2    1
  AMP PEAK 3(19Q13.43) WILD-TYPE   14    9
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            2                             14
  CLUS_2                            1                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(19Q13.43) MUTATED        0      0      0      2      0      1
  AMP PEAK 3(19Q13.43) WILD-TYPE      4      4      5      3      2      3
                                vv
clus                             CLUS_7
  AMP PEAK 3(19Q13.43) MUTATED        0
  AMP PEAK 3(19Q13.43) WILD-TYPE      2
D3V6, multiclass
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            0                              4
  CLUS_2                            0                              4
  CLUS_3                            0                              5
  CLUS_4                            2                              3
  CLUS_5                            0                              2
  CLUS_6                            1                              3
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V7, binary
                                cls
clus                              0  1
  AMP PEAK 3(19Q13.43) MUTATED    2  1
  AMP PEAK 3(19Q13.43) WILD-TYPE 12 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 3(19Q13.43) MUTATED      2    1
  AMP PEAK 3(19Q13.43) WILD-TYPE   12   11
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            1                             11
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(19Q13.43) MUTATED        0      0      0      2      0      1
  AMP PEAK 3(19Q13.43) WILD-TYPE      3      4      7      4      2      3
D3V8, multiclass
        clus
vv       AMP PEAK 3(19Q13.43) MUTATED AMP PEAK 3(19Q13.43) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            0                              4
  CLUS_3                            0                              7
  CLUS_4                            2                              4
  CLUS_5                            0                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(20P12.1) MUTATION ANALYSIS
D4V1, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    1  3
  AMP PEAK 4(20P12.1) WILD-TYPE 15 18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      1    3
  AMP PEAK 4(20P12.1) WILD-TYPE   15   18
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           3                            18
[1] 2 2
[1] FALSE
D4V2, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    2  2
  AMP PEAK 4(20P12.1) WILD-TYPE 18 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      2    2
  AMP PEAK 4(20P12.1) WILD-TYPE   18   15
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           2                            15
[1] 2 2
[1] FALSE
D4V3, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    2  2
  AMP PEAK 4(20P12.1) WILD-TYPE 16 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      2    2
  AMP PEAK 4(20P12.1) WILD-TYPE   16   16
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           2                            16
  CLUS_2                           2                            16
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(20P12.1) MUTATED        1      1      2
  AMP PEAK 4(20P12.1) WILD-TYPE     12      9     11
D4V4, multiclass
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           1                             9
  CLUS_3                           2                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V5, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    1  1
  AMP PEAK 4(20P12.1) WILD-TYPE 15  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      1    1
  AMP PEAK 4(20P12.1) WILD-TYPE   15    9
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           1                            15
  CLUS_2                           1                             9
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 4(20P12.1) MUTATED        0      1      1      0      0      0
  AMP PEAK 4(20P12.1) WILD-TYPE      4      3      4      5      2      4
                               vv
clus                            CLUS_7
  AMP PEAK 4(20P12.1) MUTATED        0
  AMP PEAK 4(20P12.1) WILD-TYPE      2
D4V6, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 4(20P12.1) MUTATED"
clus
  AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE 
                            2                            24 
                   TCGA-LK-A4NW                    TCGA-LK-A4O2 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-LK-A4O4                    TCGA-LK-A4O5 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-LK-A4O6                    TCGA-LK-A4O7 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LI                    TCGA-MQ-A4LJ 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LM                    TCGA-MQ-A4LP 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LV                    TCGA-MQ-A6BR 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A6BS                    TCGA-NQ-A638 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SC-A6LM                    TCGA-SC-A6LN 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SC-A6LR                    TCGA-SH-A7BC 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SH-A7BD                    TCGA-SH-A7BH 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-TS-A7OY                    TCGA-TS-A7P0 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-TS-A7P8                    TCGA-TS-A7PB 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
D4V7, binary
                               cls
clus                             0  1
  AMP PEAK 4(20P12.1) MUTATED    1  1
  AMP PEAK 4(20P12.1) WILD-TYPE 13 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(20P12.1) MUTATED      1    1
  AMP PEAK 4(20P12.1) WILD-TYPE   13   11
        clus
vv       AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                            11
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 4(20P12.1) MUTATED        0      1      1      0      0      0
  AMP PEAK 4(20P12.1) WILD-TYPE      3      3      6      6      2      4
D4V8, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 4(20P12.1) MUTATED"
clus
  AMP PEAK 4(20P12.1) MUTATED AMP PEAK 4(20P12.1) WILD-TYPE 
                            2                            24 
                   TCGA-LK-A4NW                    TCGA-LK-A4O2 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-LK-A4O4                    TCGA-LK-A4O5 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-LK-A4O6                    TCGA-LK-A4O7 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LI                    TCGA-MQ-A4LJ 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LM                    TCGA-MQ-A4LP 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A4LV                    TCGA-MQ-A6BR 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-MQ-A6BS                    TCGA-NQ-A638 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SC-A6LM                    TCGA-SC-A6LN 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SC-A6LR                    TCGA-SH-A7BC 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-SH-A7BD                    TCGA-SH-A7BH 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-TS-A7OY                    TCGA-TS-A7P0 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 
                   TCGA-TS-A7P8                    TCGA-TS-A7PB 
"AMP PEAK 4(20P12.1) WILD-TYPE" "AMP PEAK 4(20P12.1) WILD-TYPE" 

Clustering(5) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
D5V1, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED   12  5
  DEL PEAK  1(1P36.23) WILD-TYPE  4 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED     12    5
  DEL PEAK  1(1P36.23) WILD-TYPE    4   16
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           12                              4
  CLUS_2                            5                             16
[1] 2 2
[1] FALSE
D5V2, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED    9  8
  DEL PEAK  1(1P36.23) WILD-TYPE 11  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      9    8
  DEL PEAK  1(1P36.23) WILD-TYPE   11    9
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                             11
  CLUS_2                            8                              9
[1] 2 2
[1] FALSE
D5V3, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED    8  9
  DEL PEAK  1(1P36.23) WILD-TYPE 10  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      8    9
  DEL PEAK  1(1P36.23) WILD-TYPE   10    9
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            9                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.23) MUTATED        4      7      6
  DEL PEAK  1(1P36.23) WILD-TYPE      9      3      7
D5V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            4                              9
  CLUS_2                            7                              3
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V5, binary
                                cls
clus                             0 1
  DEL PEAK  1(1P36.23) MUTATED   9 4
  DEL PEAK  1(1P36.23) WILD-TYPE 7 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      9    4
  DEL PEAK  1(1P36.23) WILD-TYPE    7    6
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            4                              6
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        1      4      3      4      0      1
  DEL PEAK  1(1P36.23) WILD-TYPE      3      0      2      1      2      3
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.23) MUTATED        0
  DEL PEAK  1(1P36.23) WILD-TYPE      2
D5V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            4                              0
  CLUS_3                            3                              2
  CLUS_4                            4                              1
  CLUS_5                            0                              2
  CLUS_6                            1                              3
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V7, binary
                                cls
clus                             0 1
  DEL PEAK  1(1P36.23) MUTATED   8 5
  DEL PEAK  1(1P36.23) WILD-TYPE 6 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      8    5
  DEL PEAK  1(1P36.23) WILD-TYPE    6    7
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                            5                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.23) MUTATED        0      4      3      5      0      1
  DEL PEAK  1(1P36.23) WILD-TYPE      3      0      4      1      2      3
D5V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            4                              0
  CLUS_3                            3                              4
  CLUS_4                            5                              1
  CLUS_5                            0                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
D6V1, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P22.1) MUTATED   10  7
  DEL PEAK  2(1P22.1) WILD-TYPE  6 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED     10    7
  DEL PEAK  2(1P22.1) WILD-TYPE    6   14
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          10                             6
  CLUS_2                           7                            14
[1] 2 2
[1] FALSE
D6V2, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P22.1) MUTATED   12  5
  DEL PEAK  2(1P22.1) WILD-TYPE  8 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED     12    5
  DEL PEAK  2(1P22.1) WILD-TYPE    8   12
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                           5                            12
[1] 2 2
[1] FALSE
D6V3, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P22.1) MUTATED    9  7
  DEL PEAK  2(1P22.1) WILD-TYPE  9 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      9    7
  DEL PEAK  2(1P22.1) WILD-TYPE    9   11
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           9                             9
  CLUS_2                           7                            11
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        5      5      6
  DEL PEAK  2(1P22.1) WILD-TYPE      8      5      7
D6V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           5                             8
  CLUS_2                           5                             5
  CLUS_3                           6                             7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V5, binary
                               cls
clus                            0 1
  DEL PEAK  2(1P22.1) MUTATED   7 5
  DEL PEAK  2(1P22.1) WILD-TYPE 9 5
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      7    5
  DEL PEAK  2(1P22.1) WILD-TYPE    9    5
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           7                             9
  CLUS_2                           5                             5
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED        1      2      1      2      1      3
  DEL PEAK  2(1P22.1) WILD-TYPE      3      2      4      3      1      1
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P22.1) MUTATED        2
  DEL PEAK  2(1P22.1) WILD-TYPE      0
D6V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           1                             3
  CLUS_2                           2                             2
  CLUS_3                           1                             4
  CLUS_4                           2                             3
  CLUS_5                           1                             1
  CLUS_6                           3                             1
  CLUS_7                           2                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V7, binary
                               cls
clus                            0 1
  DEL PEAK  2(1P22.1) MUTATED   6 6
  DEL PEAK  2(1P22.1) WILD-TYPE 8 6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      6    6
  DEL PEAK  2(1P22.1) WILD-TYPE    8    6
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           6                             6
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P22.1) MUTATED        0      2      3      3      1      3
  DEL PEAK  2(1P22.1) WILD-TYPE      3      2      4      3      1      1
D6V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           0                             3
  CLUS_2                           2                             2
  CLUS_3                           3                             4
  CLUS_4                           3                             3
  CLUS_5                           1                             1
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = DEL PEAK  3(2Q35) MUTATION ANALYSIS
D7V1, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    6  2
  DEL PEAK  3(2Q35) WILD-TYPE 10 19
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      6    2
  DEL PEAK  3(2Q35) WILD-TYPE   10   19
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         6                          10
  CLUS_2                         2                          19
[1] 2 2
[1] FALSE
D7V2, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    3  5
  DEL PEAK  3(2Q35) WILD-TYPE 17 12
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      3    5
  DEL PEAK  3(2Q35) WILD-TYPE   17   12
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          17
  CLUS_2                         5                          12
[1] 2 2
[1] FALSE
D7V3, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    4  4
  DEL PEAK  3(2Q35) WILD-TYPE 14 14
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      4    4
  DEL PEAK  3(2Q35) WILD-TYPE   14   14
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         4                          14
  CLUS_2                         4                          14
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q35) MUTATED        3      3      2
  DEL PEAK  3(2Q35) WILD-TYPE     10      7     11
D7V4, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          10
  CLUS_2                         3                           7
  CLUS_3                         2                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V5, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    3  1
  DEL PEAK  3(2Q35) WILD-TYPE 13  9
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      3    1
  DEL PEAK  3(2Q35) WILD-TYPE   13    9
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          13
  CLUS_2                         1                           9
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(2Q35) MUTATED        0      2      0      2      0      0      0
  DEL PEAK  3(2Q35) WILD-TYPE      4      2      5      3      2      4      2
D7V6, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                           4
  CLUS_2                         2                           2
  CLUS_3                         0                           5
  CLUS_4                         2                           3
  CLUS_5                         0                           2
  CLUS_6                         0                           4
  CLUS_7                         0                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V7, binary
                             cls
clus                           0  1
  DEL PEAK  3(2Q35) MUTATED    3  1
  DEL PEAK  3(2Q35) WILD-TYPE 11 11
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(2Q35) MUTATED      3    1
  DEL PEAK  3(2Q35) WILD-TYPE   11   11
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         1                          11
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2Q35) MUTATED        0      2      0      2      0      0
  DEL PEAK  3(2Q35) WILD-TYPE      3      2      7      4      2      4
D7V8, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         0                           3
  CLUS_2                         2                           2
  CLUS_3                         0                           7
  CLUS_4                         2                           4
  CLUS_5                         0                           2
  CLUS_6                         0                           4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  4(3P21.1) MUTATION ANALYSIS
D8V1, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED    8 13
  DEL PEAK  4(3P21.1) WILD-TYPE  8  8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED      8   13
  DEL PEAK  4(3P21.1) WILD-TYPE    8    8
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           8                             8
  CLUS_2                          13                             8
[1] 2 2
[1] FALSE
D8V2, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED   12  9
  DEL PEAK  4(3P21.1) WILD-TYPE  8  8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED     12    9
  DEL PEAK  4(3P21.1) WILD-TYPE    8    8
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                           9                             8
[1] 2 2
[1] FALSE
D8V3, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED   12  8
  DEL PEAK  4(3P21.1) WILD-TYPE  6 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED     12    8
  DEL PEAK  4(3P21.1) WILD-TYPE    6   10
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          12                             6
  CLUS_2                           8                            10
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P21.1) MUTATED       11      2      7
  DEL PEAK  4(3P21.1) WILD-TYPE      2      8      6
D8V4, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                          11                             2
  CLUS_2                           2                             8
  CLUS_3                           7                             6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V5, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED    5 10
  DEL PEAK  4(3P21.1) WILD-TYPE 11  0
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED      5   10
  DEL PEAK  4(3P21.1) WILD-TYPE   11    0
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                          10                             0
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.1) MUTATED        2      3      5      1      0      2
  DEL PEAK  4(3P21.1) WILD-TYPE      2      1      0      4      2      2
                               vv
clus                            CLUS_7
  DEL PEAK  4(3P21.1) MUTATED        2
  DEL PEAK  4(3P21.1) WILD-TYPE      0
D8V6, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           2                             2
  CLUS_2                           3                             1
  CLUS_3                           5                             0
  CLUS_4                           1                             4
  CLUS_5                           0                             2
  CLUS_6                           2                             2
  CLUS_7                           2                             0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V7, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P21.1) MUTATED    4 11
  DEL PEAK  4(3P21.1) WILD-TYPE 10  1
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P21.1) MUTATED      4   11
  DEL PEAK  4(3P21.1) WILD-TYPE   10    1
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                          11                             1
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(3P21.1) MUTATED        1      3      7      1      0      3
  DEL PEAK  4(3P21.1) WILD-TYPE      2      1      0      5      2      1
D8V8, multiclass
        clus
vv       DEL PEAK  4(3P21.1) MUTATED DEL PEAK  4(3P21.1) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                           3                             1
  CLUS_3                           7                             0
  CLUS_4                           1                             5
  CLUS_5                           0                             2
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  5(4Q26) MUTATION ANALYSIS
D9V1, binary
                             cls
clus                           0  1
  DEL PEAK  5(4Q26) MUTATED   12  6
  DEL PEAK  5(4Q26) WILD-TYPE  4 15
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED     12    6
  DEL PEAK  5(4Q26) WILD-TYPE    4   15
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        12                           4
  CLUS_2                         6                          15
[1] 2 2
[1] FALSE
D9V2, binary
                             cls
clus                           0  1
  DEL PEAK  5(4Q26) MUTATED    7 11
  DEL PEAK  5(4Q26) WILD-TYPE 13  6
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED      7   11
  DEL PEAK  5(4Q26) WILD-TYPE   13    6
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         7                          13
  CLUS_2                        11                           6
[1] 2 2
[1] FALSE
D9V3, binary
                             cls
clus                           0  1
  DEL PEAK  5(4Q26) MUTATED    5 13
  DEL PEAK  5(4Q26) WILD-TYPE 13  5
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED      5   13
  DEL PEAK  5(4Q26) WILD-TYPE   13    5
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         5                          13
  CLUS_2                        13                           5
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(4Q26) MUTATED        3      6      9
  DEL PEAK  5(4Q26) WILD-TYPE     10      4      4
D9V4, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         3                          10
  CLUS_2                         6                           4
  CLUS_3                         9                           4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V5, binary
                             cls
clus                           0  1
  DEL PEAK  5(4Q26) MUTATED   10  6
  DEL PEAK  5(4Q26) WILD-TYPE  6  4
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED     10    6
  DEL PEAK  5(4Q26) WILD-TYPE    6    4
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                        10                           6
  CLUS_2                         6                           4
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  5(4Q26) MUTATED        1      4      4      4      1      2      0
  DEL PEAK  5(4Q26) WILD-TYPE      3      0      1      1      1      2      2
D9V6, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         1                           3
  CLUS_2                         4                           0
  CLUS_3                         4                           1
  CLUS_4                         4                           1
  CLUS_5                         1                           1
  CLUS_6                         2                           2
  CLUS_7                         0                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V7, binary
                             cls
clus                          0 1
  DEL PEAK  5(4Q26) MUTATED   9 7
  DEL PEAK  5(4Q26) WILD-TYPE 5 5
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q26) MUTATED      9    7
  DEL PEAK  5(4Q26) WILD-TYPE    5    5
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         7                           5
[1] 2 2
[1] FALSE
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(4Q26) MUTATED        0      4      4      5      1      2
  DEL PEAK  5(4Q26) WILD-TYPE      3      0      3      1      1      2
D9V8, multiclass
        clus
vv       DEL PEAK  5(4Q26) MUTATED DEL PEAK  5(4Q26) WILD-TYPE
  CLUS_1                         0                           3
  CLUS_2                         4                           0
  CLUS_3                         4                           3
  CLUS_4                         5                           1
  CLUS_5                         1                           1
  CLUS_6                         2                           2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  6(5Q23.2) MUTATION ANALYSIS
D10V1, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    5  2
  DEL PEAK  6(5Q23.2) WILD-TYPE 11 19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      5    2
  DEL PEAK  6(5Q23.2) WILD-TYPE   11   19
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           5                            11
  CLUS_2                           2                            19
[1] 2 2
[1] FALSE
D10V2, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    5  2
  DEL PEAK  6(5Q23.2) WILD-TYPE 15 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      5    2
  DEL PEAK  6(5Q23.2) WILD-TYPE   15   15
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           5                            15
  CLUS_2                           2                            15
[1] 2 2
[1] FALSE
D10V3, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    4  3
  DEL PEAK  6(5Q23.2) WILD-TYPE 14 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      4    3
  DEL PEAK  6(5Q23.2) WILD-TYPE   14   15
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           4                            14
  CLUS_2                           3                            15
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(5Q23.2) MUTATED        3      2      2
  DEL PEAK  6(5Q23.2) WILD-TYPE     10      8     11
D10V4, multiclass
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           3                            10
  CLUS_2                           2                             8
  CLUS_3                           2                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V5, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    4  2
  DEL PEAK  6(5Q23.2) WILD-TYPE 12  8
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      4    2
  DEL PEAK  6(5Q23.2) WILD-TYPE   12    8
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           4                            12
  CLUS_2                           2                             8
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(5Q23.2) MUTATED        1      0      1      2      0      1
  DEL PEAK  6(5Q23.2) WILD-TYPE      3      4      4      3      2      3
                               vv
clus                            CLUS_7
  DEL PEAK  6(5Q23.2) MUTATED        1
  DEL PEAK  6(5Q23.2) WILD-TYPE      1
D10V6, multiclass
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           1                             3
  CLUS_2                           0                             4
  CLUS_3                           1                             4
  CLUS_4                           2                             3
  CLUS_5                           0                             2
  CLUS_6                           1                             3
  CLUS_7                           1                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V7, binary
                               cls
clus                             0  1
  DEL PEAK  6(5Q23.2) MUTATED    3  3
  DEL PEAK  6(5Q23.2) WILD-TYPE 11  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(5Q23.2) MUTATED      3    3
  DEL PEAK  6(5Q23.2) WILD-TYPE   11    9
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             9
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(5Q23.2) MUTATED        0      0      2      3      0      1
  DEL PEAK  6(5Q23.2) WILD-TYPE      3      4      5      3      2      3
D10V8, multiclass
        clus
vv       DEL PEAK  6(5Q23.2) MUTATED DEL PEAK  6(5Q23.2) WILD-TYPE
  CLUS_1                           0                             3
  CLUS_2                           0                             4
  CLUS_3                           2                             5
  CLUS_4                           3                             3
  CLUS_5                           0                             2
  CLUS_6                           1                             3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  7(6Q22.31) MUTATION ANALYSIS
D11V1, binary
                                cls
clus                              0  1
  DEL PEAK  7(6Q22.31) MUTATED   10 10
  DEL PEAK  7(6Q22.31) WILD-TYPE  6 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED     10   10
  DEL PEAK  7(6Q22.31) WILD-TYPE    6   11
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                           10                             11
[1] 2 2
[1] FALSE
D11V2, binary
                                cls
clus                              0  1
  DEL PEAK  7(6Q22.31) MUTATED   12  8
  DEL PEAK  7(6Q22.31) WILD-TYPE  8  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED     12    8
  DEL PEAK  7(6Q22.31) WILD-TYPE    8    9
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                           12                              8
  CLUS_2                            8                              9
[1] 2 2
[1] FALSE
D11V3, binary
                                cls
clus                              0  1
  DEL PEAK  7(6Q22.31) MUTATED   12  8
  DEL PEAK  7(6Q22.31) WILD-TYPE  6 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED     12    8
  DEL PEAK  7(6Q22.31) WILD-TYPE    6   10
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                           12                              6
  CLUS_2                            8                             10
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(6Q22.31) MUTATED        9      7      4
  DEL PEAK  7(6Q22.31) WILD-TYPE      4      3      9
D11V4, multiclass
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            9                              4
  CLUS_2                            7                              3
  CLUS_3                            4                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V5, binary
                                cls
clus                             0 1
  DEL PEAK  7(6Q22.31) MUTATED   7 5
  DEL PEAK  7(6Q22.31) WILD-TYPE 9 5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED      7    5
  DEL PEAK  7(6Q22.31) WILD-TYPE    9    5
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            5                              5
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(6Q22.31) MUTATED        1      2      3      4      0      0
  DEL PEAK  7(6Q22.31) WILD-TYPE      3      2      2      1      2      4
                                vv
clus                             CLUS_7
  DEL PEAK  7(6Q22.31) MUTATED        2
  DEL PEAK  7(6Q22.31) WILD-TYPE      0
D11V6, multiclass
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            2                              2
  CLUS_3                            3                              2
  CLUS_4                            4                              1
  CLUS_5                            0                              2
  CLUS_6                            0                              4
  CLUS_7                            2                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V7, binary
                                cls
clus                             0 1
  DEL PEAK  7(6Q22.31) MUTATED   6 6
  DEL PEAK  7(6Q22.31) WILD-TYPE 8 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(6Q22.31) MUTATED      6    6
  DEL PEAK  7(6Q22.31) WILD-TYPE    8    6
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            6                              8
  CLUS_2                            6                              6
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(6Q22.31) MUTATED        0      2      5      4      0      1
  DEL PEAK  7(6Q22.31) WILD-TYPE      3      2      2      2      2      3
D11V8, multiclass
        clus
vv       DEL PEAK  7(6Q22.31) MUTATED DEL PEAK  7(6Q22.31) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            2                              2
  CLUS_3                            5                              2
  CLUS_4                            4                              2
  CLUS_5                            0                              2
  CLUS_6                            1                              3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  8(9P21.3) MUTATION ANALYSIS
D12V1, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED   16  7
  DEL PEAK  8(9P21.3) WILD-TYPE  0 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED     16    7
  DEL PEAK  8(9P21.3) WILD-TYPE    0   14
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                          16                             0
  CLUS_2                           7                            14
[1] 2 2
[1] FALSE
D12V2, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED   12 11
  DEL PEAK  8(9P21.3) WILD-TYPE  8  6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED     12   11
  DEL PEAK  8(9P21.3) WILD-TYPE    8    6
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                          11                             6
[1] 2 2
[1] FALSE
D12V3, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED    9 14
  DEL PEAK  8(9P21.3) WILD-TYPE  9  4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED      9   14
  DEL PEAK  8(9P21.3) WILD-TYPE    9    4
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                           9                             9
  CLUS_2                          14                             4
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(9P21.3) MUTATED        5      8     10
  DEL PEAK  8(9P21.3) WILD-TYPE      8      2      3
D12V4, multiclass
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                           5                             8
  CLUS_2                           8                             2
  CLUS_3                          10                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V5, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED   11  7
  DEL PEAK  8(9P21.3) WILD-TYPE  5  3
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED     11    7
  DEL PEAK  8(9P21.3) WILD-TYPE    5    3
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                          11                             5
  CLUS_2                           7                             3
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(9P21.3) MUTATED        2      4      4      4      1      3
  DEL PEAK  8(9P21.3) WILD-TYPE      2      0      1      1      1      1
                               vv
clus                            CLUS_7
  DEL PEAK  8(9P21.3) MUTATED        0
  DEL PEAK  8(9P21.3) WILD-TYPE      2
D12V6, multiclass
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                           2                             2
  CLUS_2                           4                             0
  CLUS_3                           4                             1
  CLUS_4                           4                             1
  CLUS_5                           1                             1
  CLUS_6                           3                             1
  CLUS_7                           0                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V7, binary
                               cls
clus                             0  1
  DEL PEAK  8(9P21.3) MUTATED   10  8
  DEL PEAK  8(9P21.3) WILD-TYPE  4  4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(9P21.3) MUTATED     10    8
  DEL PEAK  8(9P21.3) WILD-TYPE    4    4
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                          10                             4
  CLUS_2                           8                             4
[1] 2 2
[1] FALSE
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(9P21.3) MUTATED        1      4      4      5      1      3
  DEL PEAK  8(9P21.3) WILD-TYPE      2      0      3      1      1      1
D12V8, multiclass
        clus
vv       DEL PEAK  8(9P21.3) MUTATED DEL PEAK  8(9P21.3) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                           4                             0
  CLUS_3                           4                             3
  CLUS_4                           5                             1
  CLUS_5                           1                             1
  CLUS_6                           3                             1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  9(10P15.1) MUTATION ANALYSIS
D13V1, binary
                                cls
clus                              0  1
  DEL PEAK  9(10P15.1) MUTATED    9  4
  DEL PEAK  9(10P15.1) WILD-TYPE  7 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      9    4
  DEL PEAK  9(10P15.1) WILD-TYPE    7   17
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            4                             17
[1] 2 2
[1] FALSE
D13V2, binary
                                cls
clus                              0  1
  DEL PEAK  9(10P15.1) MUTATED    6  7
  DEL PEAK  9(10P15.1) WILD-TYPE 14 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      6    7
  DEL PEAK  9(10P15.1) WILD-TYPE   14   10
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            6                             14
  CLUS_2                            7                             10
[1] 2 2
[1] FALSE
D13V3, binary
                                cls
clus                              0  1
  DEL PEAK  9(10P15.1) MUTATED    4  9
  DEL PEAK  9(10P15.1) WILD-TYPE 14  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      4    9
  DEL PEAK  9(10P15.1) WILD-TYPE   14    9
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            4                             14
  CLUS_2                            9                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(10P15.1) MUTATED        2      5      6
  DEL PEAK  9(10P15.1) WILD-TYPE     11      5      7
D13V4, multiclass
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            5                              5
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V5, binary
                                cls
clus                             0 1
  DEL PEAK  9(10P15.1) MUTATED   7 4
  DEL PEAK  9(10P15.1) WILD-TYPE 9 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      7    4
  DEL PEAK  9(10P15.1) WILD-TYPE    9    6
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            4                              6
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(10P15.1) MUTATED        1      1      3      4      0      2
  DEL PEAK  9(10P15.1) WILD-TYPE      3      3      2      1      2      2
                                vv
clus                             CLUS_7
  DEL PEAK  9(10P15.1) MUTATED        0
  DEL PEAK  9(10P15.1) WILD-TYPE      2
D13V6, multiclass
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            1                              3
  CLUS_3                            3                              2
  CLUS_4                            4                              1
  CLUS_5                            0                              2
  CLUS_6                            2                              2
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V7, binary
                                cls
clus                             0 1
  DEL PEAK  9(10P15.1) MUTATED   5 6
  DEL PEAK  9(10P15.1) WILD-TYPE 9 6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(10P15.1) MUTATED      5    6
  DEL PEAK  9(10P15.1) WILD-TYPE    9    6
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            6                              6
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(10P15.1) MUTATED        0      1      3      4      0      3
  DEL PEAK  9(10P15.1) WILD-TYPE      3      3      4      2      2      1
D13V8, multiclass
        clus
vv       DEL PEAK  9(10P15.1) MUTATED DEL PEAK  9(10P15.1) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            1                              3
  CLUS_3                            3                              4
  CLUS_4                            4                              2
  CLUS_5                            0                              2
  CLUS_6                            3                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK 10(10Q22.3) MUTATION ANALYSIS
D14V1, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    4  3
  DEL PEAK 10(10Q22.3) WILD-TYPE 12 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      4    3
  DEL PEAK 10(10Q22.3) WILD-TYPE   12   18
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            3                             18
[1] 2 2
[1] FALSE
D14V2, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    3  4
  DEL PEAK 10(10Q22.3) WILD-TYPE 17 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      3    4
  DEL PEAK 10(10Q22.3) WILD-TYPE   17   13
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            4                             13
[1] 2 2
[1] FALSE
D14V3, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    2  5
  DEL PEAK 10(10Q22.3) WILD-TYPE 16 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      2    5
  DEL PEAK 10(10Q22.3) WILD-TYPE   16   13
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            2                             16
  CLUS_2                            5                             13
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(10Q22.3) MUTATED        1      2      4
  DEL PEAK 10(10Q22.3) WILD-TYPE     12      8      9
D14V4, multiclass
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            2                              8
  CLUS_3                            4                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V5, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    4  2
  DEL PEAK 10(10Q22.3) WILD-TYPE 12  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      4    2
  DEL PEAK 10(10Q22.3) WILD-TYPE   12    8
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            4                             12
  CLUS_2                            2                              8
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(10Q22.3) MUTATED        1      0      1      2      0      2
  DEL PEAK 10(10Q22.3) WILD-TYPE      3      4      4      3      2      2
                                vv
clus                             CLUS_7
  DEL PEAK 10(10Q22.3) MUTATED        0
  DEL PEAK 10(10Q22.3) WILD-TYPE      2
D14V6, multiclass
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            0                              4
  CLUS_3                            1                              4
  CLUS_4                            2                              3
  CLUS_5                            0                              2
  CLUS_6                            2                              2
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V7, binary
                                cls
clus                              0  1
  DEL PEAK 10(10Q22.3) MUTATED    2  4
  DEL PEAK 10(10Q22.3) WILD-TYPE 12  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(10Q22.3) MUTATED      2    4
  DEL PEAK 10(10Q22.3) WILD-TYPE   12    8
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              8
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(10Q22.3) MUTATED        0      0      1      2      0      3
  DEL PEAK 10(10Q22.3) WILD-TYPE      3      4      6      4      2      1
D14V8, multiclass
        clus
vv       DEL PEAK 10(10Q22.3) MUTATED DEL PEAK 10(10Q22.3) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            0                              4
  CLUS_3                            1                              6
  CLUS_4                            2                              4
  CLUS_5                            0                              2
  CLUS_6                            3                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 11(10Q24.1) MUTATION ANALYSIS
D15V1, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    7  6
  DEL PEAK 11(10Q24.1) WILD-TYPE  9 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      7    6
  DEL PEAK 11(10Q24.1) WILD-TYPE    9   15
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            7                              9
  CLUS_2                            6                             15
[1] 2 2
[1] FALSE
D15V2, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    8  5
  DEL PEAK 11(10Q24.1) WILD-TYPE 12 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      8    5
  DEL PEAK 11(10Q24.1) WILD-TYPE   12   12
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            5                             12
[1] 2 2
[1] FALSE
D15V3, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    6  7
  DEL PEAK 11(10Q24.1) WILD-TYPE 12 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      6    7
  DEL PEAK 11(10Q24.1) WILD-TYPE   12   11
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            6                             12
  CLUS_2                            7                             11
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10Q24.1) MUTATED        3      4      6
  DEL PEAK 11(10Q24.1) WILD-TYPE     10      6      7
D15V4, multiclass
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            4                              6
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V5, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    5  6
  DEL PEAK 11(10Q24.1) WILD-TYPE 11  4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      5    6
  DEL PEAK 11(10Q24.1) WILD-TYPE   11    4
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            6                              4
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(10Q24.1) MUTATED        1      0      2      3      0      3
  DEL PEAK 11(10Q24.1) WILD-TYPE      3      4      3      2      2      1
                                vv
clus                             CLUS_7
  DEL PEAK 11(10Q24.1) MUTATED        2
  DEL PEAK 11(10Q24.1) WILD-TYPE      0
D15V6, multiclass
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            0                              4
  CLUS_3                            2                              3
  CLUS_4                            3                              2
  CLUS_5                            0                              2
  CLUS_6                            3                              1
  CLUS_7                            2                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V7, binary
                                cls
clus                              0  1
  DEL PEAK 11(10Q24.1) MUTATED    3  8
  DEL PEAK 11(10Q24.1) WILD-TYPE 11  4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 11(10Q24.1) MUTATED      3    8
  DEL PEAK 11(10Q24.1) WILD-TYPE   11    4
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            8                              4
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(10Q24.1) MUTATED        0      0      4      3      0      4
  DEL PEAK 11(10Q24.1) WILD-TYPE      3      4      3      3      2      0
D15V8, multiclass
        clus
vv       DEL PEAK 11(10Q24.1) MUTATED DEL PEAK 11(10Q24.1) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            0                              4
  CLUS_3                            4                              3
  CLUS_4                            3                              3
  CLUS_5                            0                              2
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 12(13Q13.3) MUTATION ANALYSIS
D16V1, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q13.3) MUTATED   13  8
  DEL PEAK 12(13Q13.3) WILD-TYPE  3 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED     13    8
  DEL PEAK 12(13Q13.3) WILD-TYPE    3   13
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                           13                              3
  CLUS_2                            8                             13
[1] 2 2
[1] FALSE
D16V2, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q13.3) MUTATED   10 11
  DEL PEAK 12(13Q13.3) WILD-TYPE 10  6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED     10   11
  DEL PEAK 12(13Q13.3) WILD-TYPE   10    6
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                           10                             10
  CLUS_2                           11                              6
[1] 2 2
[1] FALSE
D16V3, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q13.3) MUTATED    8 13
  DEL PEAK 12(13Q13.3) WILD-TYPE 10  5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED      8   13
  DEL PEAK 12(13Q13.3) WILD-TYPE   10    5
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                           13                              5
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(13Q13.3) MUTATED        7      5      9
  DEL PEAK 12(13Q13.3) WILD-TYPE      6      5      4
D16V4, multiclass
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                            7                              6
  CLUS_2                            5                              5
  CLUS_3                            9                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V5, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q13.3) MUTATED   10  6
  DEL PEAK 12(13Q13.3) WILD-TYPE  6  4
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED     10    6
  DEL PEAK 12(13Q13.3) WILD-TYPE    6    4
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                            6                              4
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(13Q13.3) MUTATED        2      4      3      3      1      2
  DEL PEAK 12(13Q13.3) WILD-TYPE      2      0      2      2      1      2
                                vv
clus                             CLUS_7
  DEL PEAK 12(13Q13.3) MUTATED        1
  DEL PEAK 12(13Q13.3) WILD-TYPE      1
D16V6, multiclass
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                            2                              2
  CLUS_2                            4                              0
  CLUS_3                            3                              2
  CLUS_4                            3                              2
  CLUS_5                            1                              1
  CLUS_6                            2                              2
  CLUS_7                            1                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V7, binary
                                cls
clus                             0 1
  DEL PEAK 12(13Q13.3) MUTATED   9 7
  DEL PEAK 12(13Q13.3) WILD-TYPE 5 5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q13.3) MUTATED      9    7
  DEL PEAK 12(13Q13.3) WILD-TYPE    5    5
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            7                              5
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(13Q13.3) MUTATED        1      4      4      4      1      2
  DEL PEAK 12(13Q13.3) WILD-TYPE      2      0      3      2      1      2
D16V8, multiclass
        clus
vv       DEL PEAK 12(13Q13.3) MUTATED DEL PEAK 12(13Q13.3) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                            4                              0
  CLUS_3                            4                              3
  CLUS_4                            4                              2
  CLUS_5                            1                              1
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 13(14Q11.2) MUTATION ANALYSIS
D17V1, binary
                                cls
clus                              0  1
  DEL PEAK 13(14Q11.2) MUTATED   11  5
  DEL PEAK 13(14Q11.2) WILD-TYPE  5 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED     11    5
  DEL PEAK 13(14Q11.2) WILD-TYPE    5   16
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                            5                             16
[1] 2 2
[1] FALSE
D17V2, binary
                                cls
clus                              0  1
  DEL PEAK 13(14Q11.2) MUTATED    8  8
  DEL PEAK 13(14Q11.2) WILD-TYPE 12  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED      8    8
  DEL PEAK 13(14Q11.2) WILD-TYPE   12    9
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            8                              9
[1] 2 2
[1] FALSE
D17V3, binary
                                cls
clus                              0  1
  DEL PEAK 13(14Q11.2) MUTATED    8  8
  DEL PEAK 13(14Q11.2) WILD-TYPE 10 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED      8    8
  DEL PEAK 13(14Q11.2) WILD-TYPE   10   10
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            8                             10
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(14Q11.2) MUTATED        4      7      5
  DEL PEAK 13(14Q11.2) WILD-TYPE      9      3      8
D17V4, multiclass
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            4                              9
  CLUS_2                            7                              3
  CLUS_3                            5                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V5, binary
                                cls
clus                              0  1
  DEL PEAK 13(14Q11.2) MUTATED   11  3
  DEL PEAK 13(14Q11.2) WILD-TYPE  5  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED     11    3
  DEL PEAK 13(14Q11.2) WILD-TYPE    5    7
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                            3                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(14Q11.2) MUTATED        1      3      2      5      1      2
  DEL PEAK 13(14Q11.2) WILD-TYPE      3      1      3      0      1      2
                                vv
clus                             CLUS_7
  DEL PEAK 13(14Q11.2) MUTATED        0
  DEL PEAK 13(14Q11.2) WILD-TYPE      2
D17V6, multiclass
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            3                              1
  CLUS_3                            2                              3
  CLUS_4                            5                              0
  CLUS_5                            1                              1
  CLUS_6                            2                              2
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V7, binary
                                cls
clus                             0 1
  DEL PEAK 13(14Q11.2) MUTATED   9 5
  DEL PEAK 13(14Q11.2) WILD-TYPE 5 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(14Q11.2) MUTATED      9    5
  DEL PEAK 13(14Q11.2) WILD-TYPE    5    7
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            5                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(14Q11.2) MUTATED        0      3      2      6      1      2
  DEL PEAK 13(14Q11.2) WILD-TYPE      3      1      5      0      1      2
D17V8, multiclass
        clus
vv       DEL PEAK 13(14Q11.2) MUTATED DEL PEAK 13(14Q11.2) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            3                              1
  CLUS_3                            2                              5
  CLUS_4                            6                              0
  CLUS_5                            1                              1
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 14(14Q32.31) MUTATION ANALYSIS
D18V1, binary
                                 cls
clus                               0  1
  DEL PEAK 14(14Q32.31) MUTATED   13  6
  DEL PEAK 14(14Q32.31) WILD-TYPE  3 15
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED     13    6
  DEL PEAK 14(14Q32.31) WILD-TYPE    3   15
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                            13                               3
  CLUS_2                             6                              15
[1] 2 2
[1] FALSE
D18V2, binary
                                 cls
clus                               0  1
  DEL PEAK 14(14Q32.31) MUTATED   10  9
  DEL PEAK 14(14Q32.31) WILD-TYPE 10  8
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED     10    9
  DEL PEAK 14(14Q32.31) WILD-TYPE   10    8
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                            10                              10
  CLUS_2                             9                               8
[1] 2 2
[1] FALSE
D18V3, binary
                                 cls
clus                               0  1
  DEL PEAK 14(14Q32.31) MUTATED   10  9
  DEL PEAK 14(14Q32.31) WILD-TYPE  8  9
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED     10    9
  DEL PEAK 14(14Q32.31) WILD-TYPE    8    9
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                            10                               8
  CLUS_2                             9                               9
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(14Q32.31) MUTATED        5      8      6
  DEL PEAK 14(14Q32.31) WILD-TYPE      8      2      7
D18V4, multiclass
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                             5                               8
  CLUS_2                             8                               2
  CLUS_3                             6                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V5, binary
                                 cls
clus                               0  1
  DEL PEAK 14(14Q32.31) MUTATED   11  3
  DEL PEAK 14(14Q32.31) WILD-TYPE  5  7
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED     11    3
  DEL PEAK 14(14Q32.31) WILD-TYPE    5    7
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                            11                               5
  CLUS_2                             3                               7
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(14Q32.31) MUTATED        1      3      2      5      1      2
  DEL PEAK 14(14Q32.31) WILD-TYPE      3      1      3      0      1      2
                                 vv
clus                              CLUS_7
  DEL PEAK 14(14Q32.31) MUTATED        0
  DEL PEAK 14(14Q32.31) WILD-TYPE      2
D18V6, multiclass
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                             1                               3
  CLUS_2                             3                               1
  CLUS_3                             2                               3
  CLUS_4                             5                               0
  CLUS_5                             1                               1
  CLUS_6                             2                               2
  CLUS_7                             0                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V7, binary
                                 cls
clus                              0 1
  DEL PEAK 14(14Q32.31) MUTATED   9 5
  DEL PEAK 14(14Q32.31) WILD-TYPE 5 7
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(14Q32.31) MUTATED      9    5
  DEL PEAK 14(14Q32.31) WILD-TYPE    5    7
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                             9                               5
  CLUS_2                             5                               7
[1] 2 2
[1] FALSE
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(14Q32.31) MUTATED        0      3      2      6      1      2
  DEL PEAK 14(14Q32.31) WILD-TYPE      3      1      5      0      1      2
D18V8, multiclass
        clus
vv       DEL PEAK 14(14Q32.31) MUTATED DEL PEAK 14(14Q32.31) WILD-TYPE
  CLUS_1                             0                               3
  CLUS_2                             3                               1
  CLUS_3                             2                               5
  CLUS_4                             6                               0
  CLUS_5                             1                               1
  CLUS_6                             2                               2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 15(15Q15.1) MUTATION ANALYSIS
D19V1, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q15.1) MUTATED   11  3
  DEL PEAK 15(15Q15.1) WILD-TYPE  5 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED     11    3
  DEL PEAK 15(15Q15.1) WILD-TYPE    5   18
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                           11                              5
  CLUS_2                            3                             18
[1] 2 2
[1] FALSE
D19V2, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q15.1) MUTATED    8  6
  DEL PEAK 15(15Q15.1) WILD-TYPE 12 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED      8    6
  DEL PEAK 15(15Q15.1) WILD-TYPE   12   11
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            6                             11
[1] 2 2
[1] FALSE
D19V3, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q15.1) MUTATED    5  9
  DEL PEAK 15(15Q15.1) WILD-TYPE 13  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED      5    9
  DEL PEAK 15(15Q15.1) WILD-TYPE   13    9
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            5                             13
  CLUS_2                            9                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q15.1) MUTATED        2      6      6
  DEL PEAK 15(15Q15.1) WILD-TYPE     11      4      7
D19V4, multiclass
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            6                              4
  CLUS_3                            6                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V5, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q15.1) MUTATED    6  4
  DEL PEAK 15(15Q15.1) WILD-TYPE 10  6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED      6    4
  DEL PEAK 15(15Q15.1) WILD-TYPE   10    6
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            6                             10
  CLUS_2                            4                              6
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(15Q15.1) MUTATED        1      0      3      3      1      2
  DEL PEAK 15(15Q15.1) WILD-TYPE      3      4      2      2      1      2
                                vv
clus                             CLUS_7
  DEL PEAK 15(15Q15.1) MUTATED        0
  DEL PEAK 15(15Q15.1) WILD-TYPE      2
D19V6, multiclass
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            0                              4
  CLUS_3                            3                              2
  CLUS_4                            3                              2
  CLUS_5                            1                              1
  CLUS_6                            2                              2
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V7, binary
                                cls
clus                             0 1
  DEL PEAK 15(15Q15.1) MUTATED   5 5
  DEL PEAK 15(15Q15.1) WILD-TYPE 9 7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q15.1) MUTATED      5    5
  DEL PEAK 15(15Q15.1) WILD-TYPE    9    7
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            5                              9
  CLUS_2                            5                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(15Q15.1) MUTATED        0      0      3      4      1      2
  DEL PEAK 15(15Q15.1) WILD-TYPE      3      4      4      2      1      2
D19V8, multiclass
        clus
vv       DEL PEAK 15(15Q15.1) MUTATED DEL PEAK 15(15Q15.1) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            0                              4
  CLUS_3                            3                              4
  CLUS_4                            4                              2
  CLUS_5                            1                              1
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 16(16P13.3) MUTATION ANALYSIS
D20V1, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    1  2
  DEL PEAK 16(16P13.3) WILD-TYPE 15 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      1    2
  DEL PEAK 16(16P13.3) WILD-TYPE   15   19
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            2                             19
[1] 2 2
[1] FALSE
D20V2, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    0  3
  DEL PEAK 16(16P13.3) WILD-TYPE 20 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      0    3
  DEL PEAK 16(16P13.3) WILD-TYPE   20   14
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            3                             14
[1] 2 2
[1] FALSE
D20V3, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    0  3
  DEL PEAK 16(16P13.3) WILD-TYPE 18 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      0    3
  DEL PEAK 16(16P13.3) WILD-TYPE   18   15
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            0                             18
  CLUS_2                            3                             15
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16P13.3) MUTATED        0      1      2
  DEL PEAK 16(16P13.3) WILD-TYPE     13      9     11
D20V4, multiclass
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            1                              9
  CLUS_3                            2                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V5, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    1  1
  DEL PEAK 16(16P13.3) WILD-TYPE 15  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      1    1
  DEL PEAK 16(16P13.3) WILD-TYPE   15    9
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            1                              9
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(16P13.3) MUTATED        0      0      1      0      1      0
  DEL PEAK 16(16P13.3) WILD-TYPE      4      4      4      5      1      4
                                vv
clus                             CLUS_7
  DEL PEAK 16(16P13.3) MUTATED        0
  DEL PEAK 16(16P13.3) WILD-TYPE      2
D20V6, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 16(16P13.3) MUTATED"
clus
  DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE 
                             2                             24 
                    TCGA-LK-A4NW                     TCGA-LK-A4O2 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-LK-A4O4                     TCGA-LK-A4O5 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-LK-A4O6                     TCGA-LK-A4O7 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A4LI                     TCGA-MQ-A4LJ 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A4LP                     TCGA-MQ-A4LV 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A6BL                     TCGA-MQ-A6BS 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-NQ-A57I                     TCGA-NQ-A638 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SC-A6LM                     TCGA-SC-A6LN 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SC-A6LR                     TCGA-SH-A7BC 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SH-A7BD                     TCGA-SH-A7BH 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-TS-A7OY                     TCGA-TS-A7P0 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-TS-A7P8                     TCGA-TS-A7PB 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
D20V7, binary
                                cls
clus                              0  1
  DEL PEAK 16(16P13.3) MUTATED    1  1
  DEL PEAK 16(16P13.3) WILD-TYPE 13 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(16P13.3) MUTATED      1    1
  DEL PEAK 16(16P13.3) WILD-TYPE   13   11
        clus
vv       DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             11
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(16P13.3) MUTATED        0      0      1      0      1      0
  DEL PEAK 16(16P13.3) WILD-TYPE      3      4      6      6      1      4
D20V8, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 16(16P13.3) MUTATED"
clus
  DEL PEAK 16(16P13.3) MUTATED DEL PEAK 16(16P13.3) WILD-TYPE 
                             2                             24 
                    TCGA-LK-A4NW                     TCGA-LK-A4O2 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-LK-A4O4                     TCGA-LK-A4O5 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-LK-A4O6                     TCGA-LK-A4O7 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A4LI                     TCGA-MQ-A4LJ 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A4LP                     TCGA-MQ-A4LV 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-MQ-A6BL                     TCGA-MQ-A6BS 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-NQ-A57I                     TCGA-NQ-A638 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SC-A6LM                     TCGA-SC-A6LN 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SC-A6LR                     TCGA-SH-A7BC 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-SH-A7BD                     TCGA-SH-A7BH 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-TS-A7OY                     TCGA-TS-A7P0 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 
                    TCGA-TS-A7P8                     TCGA-TS-A7PB 
"DEL PEAK 16(16P13.3) WILD-TYPE" "DEL PEAK 16(16P13.3) WILD-TYPE" 

Clustering(21) Variable = DEL PEAK 17(16Q21) MUTATION ANALYSIS
D21V1, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    7  2
  DEL PEAK 17(16Q21) WILD-TYPE  9 19
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      7    2
  DEL PEAK 17(16Q21) WILD-TYPE    9   19
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          7                            9
  CLUS_2                          2                           19
[1] 2 2
[1] FALSE
D21V2, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    5  4
  DEL PEAK 17(16Q21) WILD-TYPE 15 13
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      5    4
  DEL PEAK 17(16Q21) WILD-TYPE   15   13
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          5                           15
  CLUS_2                          4                           13
[1] 2 2
[1] FALSE
D21V3, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    5  4
  DEL PEAK 17(16Q21) WILD-TYPE 13 14
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      5    4
  DEL PEAK 17(16Q21) WILD-TYPE   13   14
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          5                           13
  CLUS_2                          4                           14
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q21) MUTATED        1      3      5
  DEL PEAK 17(16Q21) WILD-TYPE     12      7      8
D21V4, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          1                           12
  CLUS_2                          3                            7
  CLUS_3                          5                            8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V5, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    4  4
  DEL PEAK 17(16Q21) WILD-TYPE 12  6
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      4    4
  DEL PEAK 17(16Q21) WILD-TYPE   12    6
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          4                           12
  CLUS_2                          4                            6
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 17(16Q21) MUTATED        1      0      3      2      1      1      0
  DEL PEAK 17(16Q21) WILD-TYPE      3      4      2      3      1      3      2
D21V6, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          1                            3
  CLUS_2                          0                            4
  CLUS_3                          3                            2
  CLUS_4                          2                            3
  CLUS_5                          1                            1
  CLUS_6                          1                            3
  CLUS_7                          0                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V7, binary
                              cls
clus                            0  1
  DEL PEAK 17(16Q21) MUTATED    3  5
  DEL PEAK 17(16Q21) WILD-TYPE 11  7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(16Q21) MUTATED      3    5
  DEL PEAK 17(16Q21) WILD-TYPE   11    7
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          5                            7
[1] 2 2
[1] FALSE
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(16Q21) MUTATED        0      0      3      2      1      2
  DEL PEAK 17(16Q21) WILD-TYPE      3      4      4      4      1      2
D21V8, multiclass
        clus
vv       DEL PEAK 17(16Q21) MUTATED DEL PEAK 17(16Q21) WILD-TYPE
  CLUS_1                          0                            3
  CLUS_2                          0                            4
  CLUS_3                          3                            4
  CLUS_4                          2                            4
  CLUS_5                          1                            1
  CLUS_6                          2                            2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 18(16Q24.1) MUTATION ANALYSIS
D22V1, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    9  2
  DEL PEAK 18(16Q24.1) WILD-TYPE  7 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      9    2
  DEL PEAK 18(16Q24.1) WILD-TYPE    7   19
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            9                              7
  CLUS_2                            2                             19
[1] 2 2
[1] FALSE
D22V2, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    7  4
  DEL PEAK 18(16Q24.1) WILD-TYPE 13 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      7    4
  DEL PEAK 18(16Q24.1) WILD-TYPE   13   13
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            4                             13
[1] 2 2
[1] FALSE
D22V3, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    8  3
  DEL PEAK 18(16Q24.1) WILD-TYPE 10 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      8    3
  DEL PEAK 18(16Q24.1) WILD-TYPE   10   15
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            8                             10
  CLUS_2                            3                             15
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(16Q24.1) MUTATED        3      4      4
  DEL PEAK 18(16Q24.1) WILD-TYPE     10      6      9
D22V4, multiclass
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            4                              6
  CLUS_3                            4                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V5, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    5  3
  DEL PEAK 18(16Q24.1) WILD-TYPE 11  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      5    3
  DEL PEAK 18(16Q24.1) WILD-TYPE   11    7
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            5                             11
  CLUS_2                            3                              7
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(16Q24.1) MUTATED        2      0      2      2      1      1
  DEL PEAK 18(16Q24.1) WILD-TYPE      2      4      3      3      1      3
                                vv
clus                             CLUS_7
  DEL PEAK 18(16Q24.1) MUTATED        0
  DEL PEAK 18(16Q24.1) WILD-TYPE      2
D22V6, multiclass
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            2                              2
  CLUS_2                            0                              4
  CLUS_3                            2                              3
  CLUS_4                            2                              3
  CLUS_5                            1                              1
  CLUS_6                            1                              3
  CLUS_7                            0                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V7, binary
                                cls
clus                              0  1
  DEL PEAK 18(16Q24.1) MUTATED    4  4
  DEL PEAK 18(16Q24.1) WILD-TYPE 10  8
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q24.1) MUTATED      4    4
  DEL PEAK 18(16Q24.1) WILD-TYPE   10    8
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              8
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(16Q24.1) MUTATED        1      0      2      2      1      2
  DEL PEAK 18(16Q24.1) WILD-TYPE      2      4      5      4      1      2
D22V8, multiclass
        clus
vv       DEL PEAK 18(16Q24.1) MUTATED DEL PEAK 18(16Q24.1) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                            0                              4
  CLUS_3                            2                              5
  CLUS_4                            2                              4
  CLUS_5                            1                              1
  CLUS_6                            2                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 19(22Q12.2) MUTATION ANALYSIS
D23V1, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED   15 14
  DEL PEAK 19(22Q12.2) WILD-TYPE  1  7
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED     15   14
  DEL PEAK 19(22Q12.2) WILD-TYPE    1    7
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           15                              1
  CLUS_2                           14                              7
[1] 2 2
[1] FALSE
D23V2, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED   18 11
  DEL PEAK 19(22Q12.2) WILD-TYPE  2  6
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED     18   11
  DEL PEAK 19(22Q12.2) WILD-TYPE    2    6
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           18                              2
  CLUS_2                           11                              6
[1] 2 2
[1] FALSE
D23V3, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED   15 13
  DEL PEAK 19(22Q12.2) WILD-TYPE  3  5
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED     15   13
  DEL PEAK 19(22Q12.2) WILD-TYPE    3    5
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           15                              3
  CLUS_2                           13                              5
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(22Q12.2) MUTATED       10      8     10
  DEL PEAK 19(22Q12.2) WILD-TYPE      3      2      3
D23V4, multiclass
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           10                              3
  CLUS_2                            8                              2
  CLUS_3                           10                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V5, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED   10 10
  DEL PEAK 19(22Q12.2) WILD-TYPE  6  0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED     10   10
  DEL PEAK 19(22Q12.2) WILD-TYPE    6    0
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                           10                              6
  CLUS_2                           10                              0
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(22Q12.2) MUTATED        1      3      5      4      1      4
  DEL PEAK 19(22Q12.2) WILD-TYPE      3      1      0      1      1      0
                                vv
clus                             CLUS_7
  DEL PEAK 19(22Q12.2) MUTATED        2
  DEL PEAK 19(22Q12.2) WILD-TYPE      0
D23V6, multiclass
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            3                              1
  CLUS_3                            5                              0
  CLUS_4                            4                              1
  CLUS_5                            1                              1
  CLUS_6                            4                              0
  CLUS_7                            2                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V7, binary
                                cls
clus                              0  1
  DEL PEAK 19(22Q12.2) MUTATED    8 12
  DEL PEAK 19(22Q12.2) WILD-TYPE  6  0
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(22Q12.2) MUTATED      8   12
  DEL PEAK 19(22Q12.2) WILD-TYPE    6    0
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                            8                              6
  CLUS_2                           12                              0
[1] 2 2
[1] FALSE
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(22Q12.2) MUTATED        0      3      7      5      1      4
  DEL PEAK 19(22Q12.2) WILD-TYPE      3      1      0      1      1      0
D23V8, multiclass
        clus
vv       DEL PEAK 19(22Q12.2) MUTATED DEL PEAK 19(22Q12.2) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                            3                              1
  CLUS_3                            7                              0
  CLUS_4                            5                              1
  CLUS_5                            1                              1
  CLUS_6                            4                              0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
