[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTPAAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PAAD-TP/10667978/PAAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PAAD-TP/10013781/transformed.cor.cli.txt"

nPatients in clinical file=147, in cluster file=102, common to both=102
[1]  47 102
[1] "AMP PEAK  1(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            7                            95 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                            7                            95 
[1] "AMP PEAK  2(1P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                         16                          86 
  AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE 
                         16                          86 
[1] "AMP PEAK  3(6P21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE 
                             7                             95 
  AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE 
                             7                             95 
[1] "AMP PEAK  4(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE 
                           29                            73 
  AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE 
                           29                            73 
[1] "AMP PEAK  5(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE 
                            42                             60 
  AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE 
                            42                             60 
[1] "AMP PEAK  6(9P13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE 
                           12                            90 
  AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE 
                           12                            90 
[1] "AMP PEAK  7(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE 
                            12                             90 
  AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE 
                            12                             90 
[1] "AMP PEAK  8(12P13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE 
                             16                              86 
  AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE 
                             16                              86 
[1] "AMP PEAK  9(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE 
                            22                             80 
  AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE 
                            22                             80 
[1] "AMP PEAK 10(12P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE 
                             17                              85 
  AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE 
                             17                              85 
[1] "AMP PEAK 11(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                          11                           91 
  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                          11                           91 
[1] "AMP PEAK 12(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE 
                             5                             97 
  AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE 
                             5                             97 
[1] "AMP PEAK 13(17Q21.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE 
                             11                              91 
  AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE 
                             11                              91 
[1] "AMP PEAK 14(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE 
                            34                             68 
  AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE 
                            34                             68 
[1] "AMP PEAK 15(19Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE 
                            26                             76 
  AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE 
                            26                             76 
[1] "AMP PEAK 16(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE 
                            31                             71 
  AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE 
                            31                             71 
[1] "AMP PEAK 17(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE 
                             5                             97 
  AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE 
                             5                             97 
[1] "AMP PEAK 18(XQ27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE 
                            9                            93 
  AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE 
                            9                            93 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            26                             76 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            26                             76 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            35                             67 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            35                             67 
[1] "DEL PEAK  3(1P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                           23                            79 
  DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE 
                           23                            79 
[1] "DEL PEAK  4(1Q42.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE 
                            4                            98 
  DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE 
                            4                            98 
[1] "DEL PEAK  5(2P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE 
                           11                            91 
  DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE 
                           11                            91 
[1] "DEL PEAK  6(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE 
                            4                            98 
  DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE 
                            4                            98 
[1] "DEL PEAK  7(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE 
                           22                            80 
  DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE 
                           22                            80 
[1] "DEL PEAK  8(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE 
                           17                            85 
  DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE 
                           17                            85 
[1] "DEL PEAK  9(5Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE 
                           24                            78 
  DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE 
                           24                            78 
[1] "DEL PEAK 10(6P25.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE 
                           42                            60 
  DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE 
                           42                            60 
[1] "DEL PEAK 11(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE 
                           11                            91 
  DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE 
                           11                            91 
[1] "DEL PEAK 12(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                           32                            70 
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                           32                            70 
[1] "DEL PEAK 13(8Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE 
                            9                            93 
  DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE 
                            9                            93 
[1] "DEL PEAK 14(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           67                            35 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                           67                            35 
[1] "DEL PEAK 15(9Q22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE 
                            27                             75 
  DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE 
                            27                             75 
[1] "DEL PEAK 16(10Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE 
                            19                             83 
  DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE 
                            19                             83 
[1] "DEL PEAK 17(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE 
                            18                             84 
  DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE 
                            18                             84 
[1] "DEL PEAK 18(12P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE 
                            15                             87 
  DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE 
                            15                             87 
[1] "DEL PEAK 19(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE 
                          11                           91 
  DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE 
                          11                           91 
[1] "DEL PEAK 20(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             22                              80 
  DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE 
                             22                              80 
[1] "DEL PEAK 21(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE 
                            23                             79 
  DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE 
                            23                             79 
[1] "DEL PEAK 22(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE 
                             7                             95 
  DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE 
                             7                             95 
[1] "DEL PEAK 23(17Q22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE 
                          28                           74 
  DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE 
                          28                           74 
[1] "DEL PEAK 24(18P11.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE 
                             38                              64 
  DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE 
                             38                              64 
[1] "DEL PEAK 25(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE 
                            73                             29 
  DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE 
                            73                             29 
[1] "DEL PEAK 26(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                            20                             82 
  DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE 
                            20                             82 
[1] "DEL PEAK 27(19Q13.41) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE 
                             11                              91 
  DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE 
                             11                              91 
[1] "DEL PEAK 28(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                            40                             62 
  DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE 
                            40                             62 
[1] "DEL PEAK 29(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE 
                             35                              67 
  DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE 
                             35                              67 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 102 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 102 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED        3      2      1      1
  AMP PEAK  1(1P34.2) WILD-TYPE     26     44     17      8
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                           2                            44
  CLUS_3                           1                            17
  CLUS_4                           1                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED        4      1      2
  AMP PEAK  1(1P34.2) WILD-TYPE     45     25     24
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           4                            45
  CLUS_2                           1                            25
  CLUS_3                           2                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED        4      1      1
  AMP PEAK  1(1P34.2) WILD-TYPE     42     25     22
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           4                            42
  CLUS_2                           1                            25
  CLUS_3                           1                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.2) MUTATED        1      0      1      2      1      1
  AMP PEAK  1(1P34.2) WILD-TYPE     26     13     13     10     21      6
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           1                            26
  CLUS_2                           0                            13
  CLUS_3                           1                            13
  CLUS_4                           2                            10
  CLUS_5                           1                            21
  CLUS_6                           1                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P34.2) MUTATED        3      1      1      1
  AMP PEAK  1(1P34.2) WILD-TYPE     34     24     12     19
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                           1                            24
  CLUS_3                           1                            12
  CLUS_4                           1                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P34.2) MUTATED        0      1      1      0      4      0
  AMP PEAK  1(1P34.2) WILD-TYPE     17     19     17      8     16     12
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           0                            17
  CLUS_2                           1                            19
  CLUS_3                           1                            17
  CLUS_4                           0                             8
  CLUS_5                           4                            16
  CLUS_6                           0                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED        4      1      1
  AMP PEAK  1(1P34.2) WILD-TYPE     37     22     30
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           1                            22
  CLUS_3                           1                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P34.2) MUTATED        4      1      1
  AMP PEAK  1(1P34.2) WILD-TYPE     44     27     18
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  CLUS_1                           4                            44
  CLUS_2                           1                            27
  CLUS_3                           1                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P12) MUTATED        5      6      4      1
  AMP PEAK  2(1P12) WILD-TYPE     24     40     14      8
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         5                          24
  CLUS_2                         6                          40
  CLUS_3                         4                          14
  CLUS_4                         1                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P12) MUTATED        8      4      4
  AMP PEAK  2(1P12) WILD-TYPE     41     22     22
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         8                          41
  CLUS_2                         4                          22
  CLUS_3                         4                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P12) MUTATED        6      5      2
  AMP PEAK  2(1P12) WILD-TYPE     40     21     21
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         6                          40
  CLUS_2                         5                          21
  CLUS_3                         2                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P12) MUTATED        4      1      2      1      4      1
  AMP PEAK  2(1P12) WILD-TYPE     23     12     12     11     18      6
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         4                          23
  CLUS_2                         1                          12
  CLUS_3                         2                          12
  CLUS_4                         1                          11
  CLUS_5                         4                          18
  CLUS_6                         1                           6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P12) MUTATED        5      4      1      3
  AMP PEAK  2(1P12) WILD-TYPE     32     21     12     17
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         5                          32
  CLUS_2                         4                          21
  CLUS_3                         1                          12
  CLUS_4                         3                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P12) MUTATED        1      2      2      3      4      1
  AMP PEAK  2(1P12) WILD-TYPE     16     18     16      5     16     11
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         1                          16
  CLUS_2                         2                          18
  CLUS_3                         2                          16
  CLUS_4                         3                           5
  CLUS_5                         4                          16
  CLUS_6                         1                          11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P12) MUTATED        7      2      4
  AMP PEAK  2(1P12) WILD-TYPE     34     21     27
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         7                          34
  CLUS_2                         2                          21
  CLUS_3                         4                          27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P12) MUTATED        6      5      2
  AMP PEAK  2(1P12) WILD-TYPE     42     23     17
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P12) MUTATED AMP PEAK  2(1P12) WILD-TYPE
  CLUS_1                         6                          42
  CLUS_2                         5                          23
  CLUS_3                         2                          17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(6P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(6P21.31) MUTATED        5      1      1      0
  AMP PEAK  3(6P21.31) WILD-TYPE     24     45     17      9
D3V1, multiclass
        clus
vv       AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            1                             45
  CLUS_3                            1                             17
  CLUS_4                            0                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.31) MUTATED        5      2      0
  AMP PEAK  3(6P21.31) WILD-TYPE     44     24     26
D3V2, multiclass
        clus
vv       AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE
  CLUS_1                            5                             44
  CLUS_2                            2                             24
  CLUS_3                            0                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.31) MUTATED        4      3      0
  AMP PEAK  3(6P21.31) WILD-TYPE     42     23     23
D3V3, multiclass
        clus
vv       AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE
  CLUS_1                            4                             42
  CLUS_2                            3                             23
  CLUS_3                            0                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.31) MUTATED        3      0      0      1      3      0
  AMP PEAK  3(6P21.31) WILD-TYPE     24     13     14     11     19      7
D3V4, multiclass
        clus
vv       AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE
  CLUS_1                            3                             24
  CLUS_2                            0                             13
  CLUS_3                            0                             14
  CLUS_4                            1                             11
  CLUS_5                            3                             19
  CLUS_6                            0                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(6P21.31) MUTATED        3      3      0      1
  AMP PEAK  3(6P21.31) WILD-TYPE     34     22     13     19
D3V5, multiclass
        clus
vv       AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                            3                             22
  CLUS_3                            0                             13
  CLUS_4                            1                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(6P21.31) MUTATED        1      0      0      3      2      1
  AMP PEAK  3(6P21.31) WILD-TYPE     16     20     18      5     18     11
D3V6, multiclass
        clus
vv       AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            0                             20
  CLUS_3                            0                             18
  CLUS_4                            3                              5
  CLUS_5                            2                             18
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.31) MUTATED        5      2      0
  AMP PEAK  3(6P21.31) WILD-TYPE     36     21     31
D3V7, multiclass
        clus
vv       AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            2                             21
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(6P21.31) MUTATED        4      3      0
  AMP PEAK  3(6P21.31) WILD-TYPE     44     25     19
D3V8, multiclass
        clus
vv       AMP PEAK  3(6P21.31) MUTATED AMP PEAK  3(6P21.31) WILD-TYPE
  CLUS_1                            4                             44
  CLUS_2                            3                             25
  CLUS_3                            0                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(7Q22.1) MUTATED       14      3      4      8
  AMP PEAK  4(7Q22.1) WILD-TYPE     15     43     14      1
D4V1, multiclass
        clus
vv       AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE
  CLUS_1                          14                            15
  CLUS_2                           3                            43
  CLUS_3                           4                            14
  CLUS_4                           8                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(7Q22.1) MUTATED       20      4      4
  AMP PEAK  4(7Q22.1) WILD-TYPE     29     22     22
D4V2, multiclass
        clus
vv       AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE
  CLUS_1                          20                            29
  CLUS_2                           4                            22
  CLUS_3                           4                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(7Q22.1) MUTATED       18      5      3
  AMP PEAK  4(7Q22.1) WILD-TYPE     28     21     20
D4V3, multiclass
        clus
vv       AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE
  CLUS_1                          18                            28
  CLUS_2                           5                            21
  CLUS_3                           3                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(7Q22.1) MUTATED       12      3      1      4      4      2
  AMP PEAK  4(7Q22.1) WILD-TYPE     15     10     13      8     18      5
D4V4, multiclass
        clus
vv       AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE
  CLUS_1                          12                            15
  CLUS_2                           3                            10
  CLUS_3                           1                            13
  CLUS_4                           4                             8
  CLUS_5                           4                            18
  CLUS_6                           2                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(7Q22.1) MUTATED       14      5      2      5
  AMP PEAK  4(7Q22.1) WILD-TYPE     23     20     11     15
D4V5, multiclass
        clus
vv       AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE
  CLUS_1                          14                            23
  CLUS_2                           5                            20
  CLUS_3                           2                            11
  CLUS_4                           5                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(7Q22.1) MUTATED        7      3      2      2      7      5
  AMP PEAK  4(7Q22.1) WILD-TYPE     10     17     16      6     13      7
D4V6, multiclass
        clus
vv       AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE
  CLUS_1                           7                            10
  CLUS_2                           3                            17
  CLUS_3                           2                            16
  CLUS_4                           2                             6
  CLUS_5                           7                            13
  CLUS_6                           5                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(7Q22.1) MUTATED       18      2      6
  AMP PEAK  4(7Q22.1) WILD-TYPE     23     21     25
D4V7, multiclass
        clus
vv       AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE
  CLUS_1                          18                            23
  CLUS_2                           2                            21
  CLUS_3                           6                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(7Q22.1) MUTATED       19      5      2
  AMP PEAK  4(7Q22.1) WILD-TYPE     29     23     17
D4V8, multiclass
        clus
vv       AMP PEAK  4(7Q22.1) MUTATED AMP PEAK  4(7Q22.1) WILD-TYPE
  CLUS_1                          19                            29
  CLUS_2                           5                            23
  CLUS_3                           2                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8Q24.21) MUTATED       25      8      6      3
  AMP PEAK  5(8Q24.21) WILD-TYPE      4     38     12      6
D5V1, multiclass
        clus
vv       AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE
  CLUS_1                           25                              4
  CLUS_2                            8                             38
  CLUS_3                            6                             12
  CLUS_4                            3                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8Q24.21) MUTATED       30      6      5
  AMP PEAK  5(8Q24.21) WILD-TYPE     19     20     21
D5V2, multiclass
        clus
vv       AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE
  CLUS_1                           30                             19
  CLUS_2                            6                             20
  CLUS_3                            5                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8Q24.21) MUTATED       22     13      5
  AMP PEAK  5(8Q24.21) WILD-TYPE     24     13     18
D5V3, multiclass
        clus
vv       AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE
  CLUS_1                           22                             24
  CLUS_2                           13                             13
  CLUS_3                            5                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8Q24.21) MUTATED       15      8      3      3      9      2
  AMP PEAK  5(8Q24.21) WILD-TYPE     12      5     11      9     13      5
D5V4, multiclass
        clus
vv       AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                            8                              5
  CLUS_3                            3                             11
  CLUS_4                            3                              9
  CLUS_5                            9                             13
  CLUS_6                            2                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(8Q24.21) MUTATED       20     10      4      6
  AMP PEAK  5(8Q24.21) WILD-TYPE     17     15      9     14
D5V5, multiclass
        clus
vv       AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE
  CLUS_1                           20                             17
  CLUS_2                           10                             15
  CLUS_3                            4                              9
  CLUS_4                            6                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(8Q24.21) MUTATED       12      5      3      6      8      6
  AMP PEAK  5(8Q24.21) WILD-TYPE      5     15     15      2     12      6
D5V6, multiclass
        clus
vv       AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE
  CLUS_1                           12                              5
  CLUS_2                            5                             15
  CLUS_3                            3                             15
  CLUS_4                            6                              2
  CLUS_5                            8                             12
  CLUS_6                            6                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8Q24.21) MUTATED       24      8      8
  AMP PEAK  5(8Q24.21) WILD-TYPE     17     15     23
D5V7, multiclass
        clus
vv       AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE
  CLUS_1                           24                             17
  CLUS_2                            8                             15
  CLUS_3                            8                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(8Q24.21) MUTATED       26     11      3
  AMP PEAK  5(8Q24.21) WILD-TYPE     22     17     16
D5V8, multiclass
        clus
vv       AMP PEAK  5(8Q24.21) MUTATED AMP PEAK  5(8Q24.21) WILD-TYPE
  CLUS_1                           26                             22
  CLUS_2                           11                             17
  CLUS_3                            3                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(9P13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(9P13.3) MUTATED        6      2      4      0
  AMP PEAK  6(9P13.3) WILD-TYPE     23     44     14      9
D6V1, multiclass
        clus
vv       AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE
  CLUS_1                           6                            23
  CLUS_2                           2                            44
  CLUS_3                           4                            14
  CLUS_4                           0                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(9P13.3) MUTATED        9      1      2
  AMP PEAK  6(9P13.3) WILD-TYPE     40     25     24
D6V2, multiclass
        clus
vv       AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE
  CLUS_1                           9                            40
  CLUS_2                           1                            25
  CLUS_3                           2                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(9P13.3) MUTATED        8      3      0
  AMP PEAK  6(9P13.3) WILD-TYPE     38     23     23
D6V3, multiclass
        clus
vv       AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE
  CLUS_1                           8                            38
  CLUS_2                           3                            23
  CLUS_3                           0                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(9P13.3) MUTATED        5      1      0      2      2      1
  AMP PEAK  6(9P13.3) WILD-TYPE     22     12     14     10     20      6
D6V4, multiclass
        clus
vv       AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                           1                            12
  CLUS_3                           0                            14
  CLUS_4                           2                            10
  CLUS_5                           2                            20
  CLUS_6                           1                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(9P13.3) MUTATED        6      2      0      3
  AMP PEAK  6(9P13.3) WILD-TYPE     31     23     13     17
D6V5, multiclass
        clus
vv       AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                           2                            23
  CLUS_3                           0                            13
  CLUS_4                           3                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(9P13.3) MUTATED        3      1      0      1      5      1
  AMP PEAK  6(9P13.3) WILD-TYPE     14     19     18      7     15     11
D6V6, multiclass
        clus
vv       AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE
  CLUS_1                           3                            14
  CLUS_2                           1                            19
  CLUS_3                           0                            18
  CLUS_4                           1                             7
  CLUS_5                           5                            15
  CLUS_6                           1                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(9P13.3) MUTATED        7      1      3
  AMP PEAK  6(9P13.3) WILD-TYPE     34     22     28
D6V7, multiclass
        clus
vv       AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           1                            22
  CLUS_3                           3                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(9P13.3) MUTATED        9      2      0
  AMP PEAK  6(9P13.3) WILD-TYPE     39     26     19
D6V8, multiclass
        clus
vv       AMP PEAK  6(9P13.3) MUTATED AMP PEAK  6(9P13.3) WILD-TYPE
  CLUS_1                           9                            39
  CLUS_2                           2                            26
  CLUS_3                           0                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(11P11.2) MUTATED        8      2      1      1
  AMP PEAK  7(11P11.2) WILD-TYPE     21     44     17      8
D7V1, multiclass
        clus
vv       AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                            2                             44
  CLUS_3                            1                             17
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(11P11.2) MUTATED        9      1      2
  AMP PEAK  7(11P11.2) WILD-TYPE     40     25     24
D7V2, multiclass
        clus
vv       AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE
  CLUS_1                            9                             40
  CLUS_2                            1                             25
  CLUS_3                            2                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(11P11.2) MUTATED        7      3      1
  AMP PEAK  7(11P11.2) WILD-TYPE     39     23     22
D7V3, multiclass
        clus
vv       AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE
  CLUS_1                            7                             39
  CLUS_2                            3                             23
  CLUS_3                            1                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(11P11.2) MUTATED        4      3      1      1      2      0
  AMP PEAK  7(11P11.2) WILD-TYPE     23     10     13     11     20      7
D7V4, multiclass
        clus
vv       AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE
  CLUS_1                            4                             23
  CLUS_2                            3                             10
  CLUS_3                            1                             13
  CLUS_4                            1                             11
  CLUS_5                            2                             20
  CLUS_6                            0                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(11P11.2) MUTATED        6      3      1      1
  AMP PEAK  7(11P11.2) WILD-TYPE     31     22     12     19
D7V5, multiclass
        clus
vv       AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE
  CLUS_1                            6                             31
  CLUS_2                            3                             22
  CLUS_3                            1                             12
  CLUS_4                            1                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(11P11.2) MUTATED        3      0      1      2      3      2
  AMP PEAK  7(11P11.2) WILD-TYPE     14     20     17      6     17     10
D7V6, multiclass
        clus
vv       AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            0                             20
  CLUS_3                            1                             17
  CLUS_4                            2                              6
  CLUS_5                            3                             17
  CLUS_6                            2                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(11P11.2) MUTATED        7      2      2
  AMP PEAK  7(11P11.2) WILD-TYPE     34     21     29
D7V7, multiclass
        clus
vv       AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE
  CLUS_1                            7                             34
  CLUS_2                            2                             21
  CLUS_3                            2                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(11P11.2) MUTATED        8      2      1
  AMP PEAK  7(11P11.2) WILD-TYPE     40     26     18
D7V8, multiclass
        clus
vv       AMP PEAK  7(11P11.2) MUTATED AMP PEAK  7(11P11.2) WILD-TYPE
  CLUS_1                            8                             40
  CLUS_2                            2                             26
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(12P13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(12P13.33) MUTATED       15      0      0      1
  AMP PEAK  8(12P13.33) WILD-TYPE     14     46     18      8
D8V1, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            15                              14
  CLUS_2                             0                              46
  CLUS_3                             0                              18
  CLUS_4                             1                               8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(12P13.33) MUTATED       15      1      0
  AMP PEAK  8(12P13.33) WILD-TYPE     34     25     26
D8V2, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            15                              34
  CLUS_2                             1                              25
  CLUS_3                             0                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(12P13.33) MUTATED       10      4      1
  AMP PEAK  8(12P13.33) WILD-TYPE     36     22     22
D8V3, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            10                              36
  CLUS_2                             4                              22
  CLUS_3                             1                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(12P13.33) MUTATED        7      2      0      2      4      0
  AMP PEAK  8(12P13.33) WILD-TYPE     20     11     14     10     18      7
D8V4, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                             7                              20
  CLUS_2                             2                              11
  CLUS_3                             0                              14
  CLUS_4                             2                              10
  CLUS_5                             4                              18
  CLUS_6                             0                               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(12P13.33) MUTATED        8      4      1      2
  AMP PEAK  8(12P13.33) WILD-TYPE     29     21     12     18
D8V5, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                             8                              29
  CLUS_2                             4                              21
  CLUS_3                             1                              12
  CLUS_4                             2                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(12P13.33) MUTATED        7      1      0      4      2      1
  AMP PEAK  8(12P13.33) WILD-TYPE     10     19     18      4     18     11
D8V6, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                             7                              10
  CLUS_2                             1                              19
  CLUS_3                             0                              18
  CLUS_4                             4                               4
  CLUS_5                             2                              18
  CLUS_6                             1                              11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(12P13.33) MUTATED       11      2      2
  AMP PEAK  8(12P13.33) WILD-TYPE     30     21     29
D8V7, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            11                              30
  CLUS_2                             2                              21
  CLUS_3                             2                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(12P13.33) MUTATED       10      5      0
  AMP PEAK  8(12P13.33) WILD-TYPE     38     23     19
D8V8, multiclass
        clus
vv       AMP PEAK  8(12P13.33) MUTATED AMP PEAK  8(12P13.33) WILD-TYPE
  CLUS_1                            10                              38
  CLUS_2                             5                              23
  CLUS_3                             0                              19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12P12.1) MUTATED       16      0      5      1
  AMP PEAK  9(12P12.1) WILD-TYPE     13     46     13      8
D9V1, multiclass
        clus
vv       AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                            0                             46
  CLUS_3                            5                             13
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P12.1) MUTATED       20      1      1
  AMP PEAK  9(12P12.1) WILD-TYPE     29     25     25
D9V2, multiclass
        clus
vv       AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE
  CLUS_1                           20                             29
  CLUS_2                            1                             25
  CLUS_3                            1                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P12.1) MUTATED       15      3      1
  AMP PEAK  9(12P12.1) WILD-TYPE     31     23     22
D9V3, multiclass
        clus
vv       AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE
  CLUS_1                           15                             31
  CLUS_2                            3                             23
  CLUS_3                            1                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12P12.1) MUTATED       10      4      0      2      3      0
  AMP PEAK  9(12P12.1) WILD-TYPE     17      9     14     10     19      7
D9V4, multiclass
        clus
vv       AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                            4                              9
  CLUS_3                            0                             14
  CLUS_4                            2                             10
  CLUS_5                            3                             19
  CLUS_6                            0                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(12P12.1) MUTATED       12      3      1      3
  AMP PEAK  9(12P12.1) WILD-TYPE     25     22     12     17
D9V5, multiclass
        clus
vv       AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                            3                             22
  CLUS_3                            1                             12
  CLUS_4                            3                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(12P12.1) MUTATED        7      0      0      4      3      5
  AMP PEAK  9(12P12.1) WILD-TYPE     10     20     18      4     17      7
D9V6, multiclass
        clus
vv       AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                            0                             20
  CLUS_3                            0                             18
  CLUS_4                            4                              4
  CLUS_5                            3                             17
  CLUS_6                            5                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P12.1) MUTATED       15      2      2
  AMP PEAK  9(12P12.1) WILD-TYPE     26     21     29
D9V7, multiclass
        clus
vv       AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE
  CLUS_1                           15                             26
  CLUS_2                            2                             21
  CLUS_3                            2                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(12P12.1) MUTATED       15      4      0
  AMP PEAK  9(12P12.1) WILD-TYPE     33     24     19
D9V8, multiclass
        clus
vv       AMP PEAK  9(12P12.1) MUTATED AMP PEAK  9(12P12.1) WILD-TYPE
  CLUS_1                           15                             33
  CLUS_2                            4                             24
  CLUS_3                            0                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(12P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P11.21) MUTATED       14      0      3      0
  AMP PEAK 10(12P11.21) WILD-TYPE     15     46     15      9
D10V1, multiclass
        clus
vv       AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE
  CLUS_1                            14                              15
  CLUS_2                             0                              46
  CLUS_3                             3                              15
  CLUS_4                             0                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P11.21) MUTATED       15      1      1
  AMP PEAK 10(12P11.21) WILD-TYPE     34     25     25
D10V2, multiclass
        clus
vv       AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE
  CLUS_1                            15                              34
  CLUS_2                             1                              25
  CLUS_3                             1                              25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P11.21) MUTATED       11      2      2
  AMP PEAK 10(12P11.21) WILD-TYPE     35     24     21
D10V3, multiclass
        clus
vv       AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE
  CLUS_1                            11                              35
  CLUS_2                             2                              24
  CLUS_3                             2                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P11.21) MUTATED        7      3      0      2      2      1
  AMP PEAK 10(12P11.21) WILD-TYPE     20     10     14     10     20      6
D10V4, multiclass
        clus
vv       AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE
  CLUS_1                             7                              20
  CLUS_2                             3                              10
  CLUS_3                             0                              14
  CLUS_4                             2                              10
  CLUS_5                             2                              20
  CLUS_6                             1                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P11.21) MUTATED        8      3      2      2
  AMP PEAK 10(12P11.21) WILD-TYPE     29     22     11     18
D10V5, multiclass
        clus
vv       AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE
  CLUS_1                             8                              29
  CLUS_2                             3                              22
  CLUS_3                             2                              11
  CLUS_4                             2                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P11.21) MUTATED        5      0      1      3      2      4
  AMP PEAK 10(12P11.21) WILD-TYPE     12     20     17      5     18      8
D10V6, multiclass
        clus
vv       AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE
  CLUS_1                             5                              12
  CLUS_2                             0                              20
  CLUS_3                             1                              17
  CLUS_4                             3                               5
  CLUS_5                             2                              18
  CLUS_6                             4                               8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P11.21) MUTATED       11      1      3
  AMP PEAK 10(12P11.21) WILD-TYPE     30     22     28
D10V7, multiclass
        clus
vv       AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE
  CLUS_1                            11                              30
  CLUS_2                             1                              22
  CLUS_3                             3                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P11.21) MUTATED       11      3      1
  AMP PEAK 10(12P11.21) WILD-TYPE     37     25     18
D10V8, multiclass
        clus
vv       AMP PEAK 10(12P11.21) MUTATED AMP PEAK 10(12P11.21) WILD-TYPE
  CLUS_1                            11                              37
  CLUS_2                             3                              25
  CLUS_3                             1                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12Q15) MUTATED        8      0      2      1
  AMP PEAK 11(12Q15) WILD-TYPE     21     46     16      8
D11V1, multiclass
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  CLUS_1                          8                           21
  CLUS_2                          0                           46
  CLUS_3                          2                           16
  CLUS_4                          1                            8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q15) MUTATED       11      0      0
  AMP PEAK 11(12Q15) WILD-TYPE     38     26     26
D11V2, multiclass
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  CLUS_1                         11                           38
  CLUS_2                          0                           26
  CLUS_3                          0                           26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q15) MUTATED        9      1      0
  AMP PEAK 11(12Q15) WILD-TYPE     37     25     23
D11V3, multiclass
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  CLUS_1                          9                           37
  CLUS_2                          1                           25
  CLUS_3                          0                           23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12Q15) MUTATED        7      0      0      2      1      0
  AMP PEAK 11(12Q15) WILD-TYPE     20     13     14     10     21      7
D11V4, multiclass
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  CLUS_1                          7                           20
  CLUS_2                          0                           13
  CLUS_3                          0                           14
  CLUS_4                          2                           10
  CLUS_5                          1                           21
  CLUS_6                          0                            7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12Q15) MUTATED        7      1      0      2
  AMP PEAK 11(12Q15) WILD-TYPE     30     24     13     18
D11V5, multiclass
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  CLUS_1                          7                           30
  CLUS_2                          1                           24
  CLUS_3                          0                           13
  CLUS_4                          2                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12Q15) MUTATED        6      0      0      1      2      1
  AMP PEAK 11(12Q15) WILD-TYPE     11     20     18      7     18     11
D11V6, multiclass
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  CLUS_1                          6                           11
  CLUS_2                          0                           20
  CLUS_3                          0                           18
  CLUS_4                          1                            7
  CLUS_5                          2                           18
  CLUS_6                          1                           11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q15) MUTATED        9      0      1
  AMP PEAK 11(12Q15) WILD-TYPE     32     23     30
D11V7, multiclass
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  CLUS_1                          9                           32
  CLUS_2                          0                           23
  CLUS_3                          1                           30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q15) MUTATED        9      1      0
  AMP PEAK 11(12Q15) WILD-TYPE     39     27     19
D11V8, multiclass
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  CLUS_1                          9                           39
  CLUS_2                          1                           27
  CLUS_3                          0                           19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(17P11.2) MUTATED        2      2      1      0
  AMP PEAK 12(17P11.2) WILD-TYPE     27     44     17      9
D12V1, multiclass
        clus
vv       AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE
  CLUS_1                            2                             27
  CLUS_2                            2                             44
  CLUS_3                            1                             17
  CLUS_4                            0                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(17P11.2) MUTATED        4      1      0
  AMP PEAK 12(17P11.2) WILD-TYPE     45     25     26
D12V2, multiclass
        clus
vv       AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE
  CLUS_1                            4                             45
  CLUS_2                            1                             25
  CLUS_3                            0                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(17P11.2) MUTATED        3      2      0
  AMP PEAK 12(17P11.2) WILD-TYPE     43     24     23
D12V3, multiclass
        clus
vv       AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            2                             24
  CLUS_3                            0                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(17P11.2) MUTATED        2      1      0      0      2      0
  AMP PEAK 12(17P11.2) WILD-TYPE     25     12     14     12     20      7
D12V4, multiclass
        clus
vv       AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            1                             12
  CLUS_3                            0                             14
  CLUS_4                            0                             12
  CLUS_5                            2                             20
  CLUS_6                            0                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(17P11.2) MUTATED        3      2      0      0
  AMP PEAK 12(17P11.2) WILD-TYPE     34     23     13     20
D12V5, multiclass
        clus
vv       AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                            2                             23
  CLUS_3                            0                             13
  CLUS_4                            0                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(17P11.2) MUTATED        2      1      0      1      0      1
  AMP PEAK 12(17P11.2) WILD-TYPE     15     19     18      7     20     11
D12V6, multiclass
        clus
vv       AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE
  CLUS_1                            2                             15
  CLUS_2                            1                             19
  CLUS_3                            0                             18
  CLUS_4                            1                              7
  CLUS_5                            0                             20
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(17P11.2) MUTATED        2      3      0
  AMP PEAK 12(17P11.2) WILD-TYPE     39     20     31
D12V7, multiclass
        clus
vv       AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            3                             20
  CLUS_3                            0                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(17P11.2) MUTATED        3      2      0
  AMP PEAK 12(17P11.2) WILD-TYPE     45     26     19
D12V8, multiclass
        clus
vv       AMP PEAK 12(17P11.2) MUTATED AMP PEAK 12(17P11.2) WILD-TYPE
  CLUS_1                            3                             45
  CLUS_2                            2                             26
  CLUS_3                            0                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(17Q21.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(17Q21.32) MUTATED        7      2      2      0
  AMP PEAK 13(17Q21.32) WILD-TYPE     22     44     16      9
D13V1, multiclass
        clus
vv       AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE
  CLUS_1                             7                              22
  CLUS_2                             2                              44
  CLUS_3                             2                              16
  CLUS_4                             0                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(17Q21.32) MUTATED        7      1      3
  AMP PEAK 13(17Q21.32) WILD-TYPE     42     25     23
D13V2, multiclass
        clus
vv       AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE
  CLUS_1                             7                              42
  CLUS_2                             1                              25
  CLUS_3                             3                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(17Q21.32) MUTATED        8      2      1
  AMP PEAK 13(17Q21.32) WILD-TYPE     38     24     22
D13V3, multiclass
        clus
vv       AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE
  CLUS_1                             8                              38
  CLUS_2                             2                              24
  CLUS_3                             1                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(17Q21.32) MUTATED        5      1      0      2      2      1
  AMP PEAK 13(17Q21.32) WILD-TYPE     22     12     14     10     20      6
D13V4, multiclass
        clus
vv       AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE
  CLUS_1                             5                              22
  CLUS_2                             1                              12
  CLUS_3                             0                              14
  CLUS_4                             2                              10
  CLUS_5                             2                              20
  CLUS_6                             1                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(17Q21.32) MUTATED        5      3      1      2
  AMP PEAK 13(17Q21.32) WILD-TYPE     32     22     12     18
D13V5, multiclass
        clus
vv       AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE
  CLUS_1                             5                              32
  CLUS_2                             3                              22
  CLUS_3                             1                              12
  CLUS_4                             2                              18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(17Q21.32) MUTATED        4      1      1      2      3      0
  AMP PEAK 13(17Q21.32) WILD-TYPE     13     19     17      6     17     12
D13V6, multiclass
        clus
vv       AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE
  CLUS_1                             4                              13
  CLUS_2                             1                              19
  CLUS_3                             1                              17
  CLUS_4                             2                               6
  CLUS_5                             3                              17
  CLUS_6                             0                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(17Q21.32) MUTATED        5      3      3
  AMP PEAK 13(17Q21.32) WILD-TYPE     36     20     28
D13V7, multiclass
        clus
vv       AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE
  CLUS_1                             5                              36
  CLUS_2                             3                              20
  CLUS_3                             3                              28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(17Q21.32) MUTATED        7      3      1
  AMP PEAK 13(17Q21.32) WILD-TYPE     41     25     18
D13V8, multiclass
        clus
vv       AMP PEAK 13(17Q21.32) MUTATED AMP PEAK 13(17Q21.32) WILD-TYPE
  CLUS_1                             7                              41
  CLUS_2                             3                              25
  CLUS_3                             1                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(18Q11.2) MUTATED       11      4     16      3
  AMP PEAK 14(18Q11.2) WILD-TYPE     18     42      2      6
D14V1, multiclass
        clus
vv       AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE
  CLUS_1                           11                             18
  CLUS_2                            4                             42
  CLUS_3                           16                              2
  CLUS_4                            3                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(18Q11.2) MUTATED       26      4      3
  AMP PEAK 14(18Q11.2) WILD-TYPE     23     22     23
D14V2, multiclass
        clus
vv       AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE
  CLUS_1                           26                             23
  CLUS_2                            4                             22
  CLUS_3                            3                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(18Q11.2) MUTATED       23      8      1
  AMP PEAK 14(18Q11.2) WILD-TYPE     23     18     22
D14V3, multiclass
        clus
vv       AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE
  CLUS_1                           23                             23
  CLUS_2                            8                             18
  CLUS_3                            1                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(18Q11.2) MUTATED       15      6      0      4      5      2
  AMP PEAK 14(18Q11.2) WILD-TYPE     12      7     14      8     17      5
D14V4, multiclass
        clus
vv       AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                            6                              7
  CLUS_3                            0                             14
  CLUS_4                            4                              8
  CLUS_5                            5                             17
  CLUS_6                            2                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(18Q11.2) MUTATED       22      7      1      2
  AMP PEAK 14(18Q11.2) WILD-TYPE     15     18     12     18
D14V5, multiclass
        clus
vv       AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE
  CLUS_1                           22                             15
  CLUS_2                            7                             18
  CLUS_3                            1                             12
  CLUS_4                            2                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(18Q11.2) MUTATED       10      4      1      3      7      7
  AMP PEAK 14(18Q11.2) WILD-TYPE      7     16     17      5     13      5
D14V6, multiclass
        clus
vv       AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE
  CLUS_1                           10                              7
  CLUS_2                            4                             16
  CLUS_3                            1                             17
  CLUS_4                            3                              5
  CLUS_5                            7                             13
  CLUS_6                            7                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(18Q11.2) MUTATED       24      5      3
  AMP PEAK 14(18Q11.2) WILD-TYPE     17     18     28
D14V7, multiclass
        clus
vv       AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE
  CLUS_1                           24                             17
  CLUS_2                            5                             18
  CLUS_3                            3                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(18Q11.2) MUTATED       24      7      1
  AMP PEAK 14(18Q11.2) WILD-TYPE     24     21     18
D14V8, multiclass
        clus
vv       AMP PEAK 14(18Q11.2) MUTATED AMP PEAK 14(18Q11.2) WILD-TYPE
  CLUS_1                           24                             24
  CLUS_2                            7                             21
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(19Q13.2) MUTATED       14      4      4      4
  AMP PEAK 15(19Q13.2) WILD-TYPE     15     42     14      5
D15V1, multiclass
        clus
vv       AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE
  CLUS_1                           14                             15
  CLUS_2                            4                             42
  CLUS_3                            4                             14
  CLUS_4                            4                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(19Q13.2) MUTATED       20      2      4
  AMP PEAK 15(19Q13.2) WILD-TYPE     29     24     22
D15V2, multiclass
        clus
vv       AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE
  CLUS_1                           20                             29
  CLUS_2                            2                             24
  CLUS_3                            4                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(19Q13.2) MUTATED       16      6      3
  AMP PEAK 15(19Q13.2) WILD-TYPE     30     20     20
D15V3, multiclass
        clus
vv       AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE
  CLUS_1                           16                             30
  CLUS_2                            6                             20
  CLUS_3                            3                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(19Q13.2) MUTATED       11      5      1      2      4      2
  AMP PEAK 15(19Q13.2) WILD-TYPE     16      8     13     10     18      5
D15V4, multiclass
        clus
vv       AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                            5                              8
  CLUS_3                            1                             13
  CLUS_4                            2                             10
  CLUS_5                            4                             18
  CLUS_6                            2                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(19Q13.2) MUTATED       12      7      2      4
  AMP PEAK 15(19Q13.2) WILD-TYPE     25     18     11     16
D15V5, multiclass
        clus
vv       AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                            7                             18
  CLUS_3                            2                             11
  CLUS_4                            4                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(19Q13.2) MUTATED        8      4      2      3      4      4
  AMP PEAK 15(19Q13.2) WILD-TYPE      9     16     16      5     16      8
D15V6, multiclass
        clus
vv       AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE
  CLUS_1                            8                              9
  CLUS_2                            4                             16
  CLUS_3                            2                             16
  CLUS_4                            3                              5
  CLUS_5                            4                             16
  CLUS_6                            4                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(19Q13.2) MUTATED       14      6      5
  AMP PEAK 15(19Q13.2) WILD-TYPE     27     17     26
D15V7, multiclass
        clus
vv       AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                            6                             17
  CLUS_3                            5                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(19Q13.2) MUTATED       16      6      3
  AMP PEAK 15(19Q13.2) WILD-TYPE     32     22     16
D15V8, multiclass
        clus
vv       AMP PEAK 15(19Q13.2) MUTATED AMP PEAK 15(19Q13.2) WILD-TYPE
  CLUS_1                           16                             32
  CLUS_2                            6                             22
  CLUS_3                            3                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(20Q13.2) MUTATED       19      6      1      5
  AMP PEAK 16(20Q13.2) WILD-TYPE     10     40     17      4
D16V1, multiclass
        clus
vv       AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE
  CLUS_1                           19                             10
  CLUS_2                            6                             40
  CLUS_3                            1                             17
  CLUS_4                            5                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(20Q13.2) MUTATED       21      4      5
  AMP PEAK 16(20Q13.2) WILD-TYPE     28     22     21
D16V2, multiclass
        clus
vv       AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE
  CLUS_1                           21                             28
  CLUS_2                            4                             22
  CLUS_3                            5                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(20Q13.2) MUTATED       18      6      5
  AMP PEAK 16(20Q13.2) WILD-TYPE     28     20     18
D16V3, multiclass
        clus
vv       AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE
  CLUS_1                           18                             28
  CLUS_2                            6                             20
  CLUS_3                            5                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(20Q13.2) MUTATED       12      4      3      3      5      2
  AMP PEAK 16(20Q13.2) WILD-TYPE     15      9     11      9     17      5
D16V4, multiclass
        clus
vv       AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE
  CLUS_1                           12                             15
  CLUS_2                            4                              9
  CLUS_3                            3                             11
  CLUS_4                            3                              9
  CLUS_5                            5                             17
  CLUS_6                            2                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(20Q13.2) MUTATED       14      6      4      5
  AMP PEAK 16(20Q13.2) WILD-TYPE     23     19      9     15
D16V5, multiclass
        clus
vv       AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE
  CLUS_1                           14                             23
  CLUS_2                            6                             19
  CLUS_3                            4                              9
  CLUS_4                            5                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(20Q13.2) MUTATED       11      2      3      4      5      4
  AMP PEAK 16(20Q13.2) WILD-TYPE      6     18     15      4     15      8
D16V6, multiclass
        clus
vv       AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE
  CLUS_1                           11                              6
  CLUS_2                            2                             18
  CLUS_3                            3                             15
  CLUS_4                            4                              4
  CLUS_5                            5                             15
  CLUS_6                            4                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(20Q13.2) MUTATED       17      5      7
  AMP PEAK 16(20Q13.2) WILD-TYPE     24     18     24
D16V7, multiclass
        clus
vv       AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE
  CLUS_1                           17                             24
  CLUS_2                            5                             18
  CLUS_3                            7                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(20Q13.2) MUTATED       20      6      3
  AMP PEAK 16(20Q13.2) WILD-TYPE     28     22     16
D16V8, multiclass
        clus
vv       AMP PEAK 16(20Q13.2) MUTATED AMP PEAK 16(20Q13.2) WILD-TYPE
  CLUS_1                           20                             28
  CLUS_2                            6                             22
  CLUS_3                            3                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(XP22.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(XP22.11) MUTATED        1      3      0      1
  AMP PEAK 17(XP22.11) WILD-TYPE     28     43     18      8
D17V1, multiclass
        clus
vv       AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                            3                             43
  CLUS_3                            0                             18
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(XP22.11) MUTATED        2      2      1
  AMP PEAK 17(XP22.11) WILD-TYPE     47     24     25
D17V2, multiclass
        clus
vv       AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE
  CLUS_1                            2                             47
  CLUS_2                            2                             24
  CLUS_3                            1                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(XP22.11) MUTATED        3      1      1
  AMP PEAK 17(XP22.11) WILD-TYPE     43     25     22
D17V3, multiclass
        clus
vv       AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE
  CLUS_1                            3                             43
  CLUS_2                            1                             25
  CLUS_3                            1                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(XP22.11) MUTATED        1      0      0      1      2      1
  AMP PEAK 17(XP22.11) WILD-TYPE     26     13     14     11     20      6
D17V4, multiclass
        clus
vv       AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            0                             13
  CLUS_3                            0                             14
  CLUS_4                            1                             11
  CLUS_5                            2                             20
  CLUS_6                            1                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(XP22.11) MUTATED        2      1      1      1
  AMP PEAK 17(XP22.11) WILD-TYPE     35     24     12     19
D17V5, multiclass
        clus
vv       AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                            1                             24
  CLUS_3                            1                             12
  CLUS_4                            1                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(XP22.11) MUTATED        1      2      0      0      2      0
  AMP PEAK 17(XP22.11) WILD-TYPE     16     18     18      8     18     12
D17V6, multiclass
        clus
vv       AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE
  CLUS_1                            1                             16
  CLUS_2                            2                             18
  CLUS_3                            0                             18
  CLUS_4                            0                              8
  CLUS_5                            2                             18
  CLUS_6                            0                             12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(XP22.11) MUTATED        3      1      1
  AMP PEAK 17(XP22.11) WILD-TYPE     38     22     30
D17V7, multiclass
        clus
vv       AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            1                             22
  CLUS_3                            1                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(XP22.11) MUTATED        3      2      0
  AMP PEAK 17(XP22.11) WILD-TYPE     45     26     19
D17V8, multiclass
        clus
vv       AMP PEAK 17(XP22.11) MUTATED AMP PEAK 17(XP22.11) WILD-TYPE
  CLUS_1                            3                             45
  CLUS_2                            2                             26
  CLUS_3                            0                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(XQ27.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XQ27.1) MUTATED        6      2      1      0
  AMP PEAK 18(XQ27.1) WILD-TYPE     23     44     17      9
D18V1, multiclass
        clus
vv       AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE
  CLUS_1                           6                            23
  CLUS_2                           2                            44
  CLUS_3                           1                            17
  CLUS_4                           0                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(XQ27.1) MUTATED        5      2      2
  AMP PEAK 18(XQ27.1) WILD-TYPE     44     24     24
D18V2, multiclass
        clus
vv       AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE
  CLUS_1                           5                            44
  CLUS_2                           2                            24
  CLUS_3                           2                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(XQ27.1) MUTATED        3      4      2
  AMP PEAK 18(XQ27.1) WILD-TYPE     43     22     21
D18V3, multiclass
        clus
vv       AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           4                            22
  CLUS_3                           2                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(XQ27.1) MUTATED        2      0      2      1      4      0
  AMP PEAK 18(XQ27.1) WILD-TYPE     25     13     12     11     18      7
D18V4, multiclass
        clus
vv       AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           0                            13
  CLUS_3                           2                            12
  CLUS_4                           1                            11
  CLUS_5                           4                            18
  CLUS_6                           0                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(XQ27.1) MUTATED        4      3      1      1
  AMP PEAK 18(XQ27.1) WILD-TYPE     33     22     12     19
D18V5, multiclass
        clus
vv       AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE
  CLUS_1                           4                            33
  CLUS_2                           3                            22
  CLUS_3                           1                            12
  CLUS_4                           1                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(XQ27.1) MUTATED        2      2      2      2      1      0
  AMP PEAK 18(XQ27.1) WILD-TYPE     15     18     16      6     19     12
D18V6, multiclass
        clus
vv       AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE
  CLUS_1                           2                            15
  CLUS_2                           2                            18
  CLUS_3                           2                            16
  CLUS_4                           2                             6
  CLUS_5                           1                            19
  CLUS_6                           0                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(XQ27.1) MUTATED        5      2      2
  AMP PEAK 18(XQ27.1) WILD-TYPE     36     21     29
D18V7, multiclass
        clus
vv       AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           2                            21
  CLUS_3                           2                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(XQ27.1) MUTATED        3      4      2
  AMP PEAK 18(XQ27.1) WILD-TYPE     45     24     17
D18V8, multiclass
        clus
vv       AMP PEAK 18(XQ27.1) MUTATED AMP PEAK 18(XQ27.1) WILD-TYPE
  CLUS_1                           3                            45
  CLUS_2                           4                            24
  CLUS_3                           2                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       15      6      4      1
  DEL PEAK  1(1P36.32) WILD-TYPE     14     40     14      8
D19V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           15                             14
  CLUS_2                            6                             40
  CLUS_3                            4                             14
  CLUS_4                            1                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       17      7      2
  DEL PEAK  1(1P36.32) WILD-TYPE     32     19     24
D19V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           17                             32
  CLUS_2                            7                             19
  CLUS_3                            2                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       12     10      0
  DEL PEAK  1(1P36.32) WILD-TYPE     34     16     23
D19V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           12                             34
  CLUS_2                           10                             16
  CLUS_3                            0                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        7      6      0      3      6      0
  DEL PEAK  1(1P36.32) WILD-TYPE     20      7     14      9     16      7
D19V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                            6                              7
  CLUS_3                            0                             14
  CLUS_4                            3                              9
  CLUS_5                            6                             16
  CLUS_6                            0                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED       11      8      0      3
  DEL PEAK  1(1P36.32) WILD-TYPE     26     17     13     17
D19V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           11                             26
  CLUS_2                            8                             17
  CLUS_3                            0                             13
  CLUS_4                            3                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        5      4      0      4      5      4
  DEL PEAK  1(1P36.32) WILD-TYPE     12     16     18      4     15      8
D19V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                             12
  CLUS_2                            4                             16
  CLUS_3                            0                             18
  CLUS_4                            4                              4
  CLUS_5                            5                             15
  CLUS_6                            4                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       14      5      3
  DEL PEAK  1(1P36.32) WILD-TYPE     27     18     28
D19V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                            5                             18
  CLUS_3                            3                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       13      8      1
  DEL PEAK  1(1P36.32) WILD-TYPE     35     20     18
D19V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           13                             35
  CLUS_2                            8                             20
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       18      7      8      2
  DEL PEAK  2(1P36.11) WILD-TYPE     11     39     10      7
D20V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           18                             11
  CLUS_2                            7                             39
  CLUS_3                            8                             10
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       25      8      2
  DEL PEAK  2(1P36.11) WILD-TYPE     24     18     24
D20V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           25                             24
  CLUS_2                            8                             18
  CLUS_3                            2                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       18     13      0
  DEL PEAK  2(1P36.11) WILD-TYPE     28     13     23
D20V3, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           18                             28
  CLUS_2                           13                             13
  CLUS_3                            0                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED       11      6      0      4      9      1
  DEL PEAK  2(1P36.11) WILD-TYPE     16      7     14      8     13      6
D20V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                            6                              7
  CLUS_3                            0                             14
  CLUS_4                            4                              8
  CLUS_5                            9                             13
  CLUS_6                            1                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED       16     10      0      5
  DEL PEAK  2(1P36.11) WILD-TYPE     21     15     13     15
D20V5, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           16                             21
  CLUS_2                           10                             15
  CLUS_3                            0                             13
  CLUS_4                            5                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED        8      6      0      5      7      5
  DEL PEAK  2(1P36.11) WILD-TYPE      9     14     18      3     13      7
D20V6, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            8                              9
  CLUS_2                            6                             14
  CLUS_3                            0                             18
  CLUS_4                            5                              3
  CLUS_5                            7                             13
  CLUS_6                            5                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       20      7      4
  DEL PEAK  2(1P36.11) WILD-TYPE     21     16     27
D20V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           20                             21
  CLUS_2                            7                             16
  CLUS_3                            4                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       19     11      1
  DEL PEAK  2(1P36.11) WILD-TYPE     29     17     18
D20V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           19                             29
  CLUS_2                           11                             17
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK  3(1P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P21.2) MUTATED       16      4      3      0
  DEL PEAK  3(1P21.2) WILD-TYPE     13     42     15      9
D21V1, multiclass
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                           4                            42
  CLUS_3                           3                            15
  CLUS_4                           0                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P21.2) MUTATED       17      5      1
  DEL PEAK  3(1P21.2) WILD-TYPE     32     21     25
D21V2, multiclass
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  CLUS_1                          17                            32
  CLUS_2                           5                            21
  CLUS_3                           1                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P21.2) MUTATED       13      8      0
  DEL PEAK  3(1P21.2) WILD-TYPE     33     18     23
D21V3, multiclass
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  CLUS_1                          13                            33
  CLUS_2                           8                            18
  CLUS_3                           0                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P21.2) MUTATED        9      4      0      2      6      0
  DEL PEAK  3(1P21.2) WILD-TYPE     18      9     14     10     16      7
D21V4, multiclass
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  CLUS_1                           9                            18
  CLUS_2                           4                             9
  CLUS_3                           0                            14
  CLUS_4                           2                            10
  CLUS_5                           6                            16
  CLUS_6                           0                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1P21.2) MUTATED       10      7      0      4
  DEL PEAK  3(1P21.2) WILD-TYPE     27     18     13     16
D21V5, multiclass
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  CLUS_1                          10                            27
  CLUS_2                           7                            18
  CLUS_3                           0                            13
  CLUS_4                           4                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(1P21.2) MUTATED        8      4      0      4      3      2
  DEL PEAK  3(1P21.2) WILD-TYPE      9     16     18      4     17     10
D21V6, multiclass
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  CLUS_1                           8                             9
  CLUS_2                           4                            16
  CLUS_3                           0                            18
  CLUS_4                           4                             4
  CLUS_5                           3                            17
  CLUS_6                           2                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P21.2) MUTATED       14      5      2
  DEL PEAK  3(1P21.2) WILD-TYPE     27     18     29
D21V7, multiclass
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  CLUS_1                          14                            27
  CLUS_2                           5                            18
  CLUS_3                           2                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1P21.2) MUTATED       12      8      1
  DEL PEAK  3(1P21.2) WILD-TYPE     36     20     18
D21V8, multiclass
        clus
vv       DEL PEAK  3(1P21.2) MUTATED DEL PEAK  3(1P21.2) WILD-TYPE
  CLUS_1                          12                            36
  CLUS_2                           8                            20
  CLUS_3                           1                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  4(1Q42.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.2) MUTATED        2      0      0      2
  DEL PEAK  4(1Q42.2) WILD-TYPE     27     46     18      7
D22V1, multiclass
        clus
vv       DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  CLUS_1                           2                            27
  CLUS_2                           0                            46
  CLUS_3                           0                            18
  CLUS_4                           2                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.2) MUTATED        4      0      0
  DEL PEAK  4(1Q42.2) WILD-TYPE     45     26     26
D22V2, multiclass
        clus
vv       DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  CLUS_1                           4                            45
  CLUS_2                           0                            26
  CLUS_3                           0                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.2) MUTATED        3      1      0
  DEL PEAK  4(1Q42.2) WILD-TYPE     43     25     23
D22V3, multiclass
        clus
vv       DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  CLUS_1                           3                            43
  CLUS_2                           1                            25
  CLUS_3                           0                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1Q42.2) MUTATED        2      1      0      1      0      0
  DEL PEAK  4(1Q42.2) WILD-TYPE     25     12     14     11     22      7
D22V4, multiclass
        clus
vv       DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           1                            12
  CLUS_3                           0                            14
  CLUS_4                           1                            11
  CLUS_5                           0                            22
  CLUS_6                           0                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(1Q42.2) MUTATED        2      1      0      1
  DEL PEAK  4(1Q42.2) WILD-TYPE     35     24     13     19
D22V5, multiclass
        clus
vv       DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                           1                            24
  CLUS_3                           0                            13
  CLUS_4                           1                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(1Q42.2) MUTATED        2      0      0      0      1      1
  DEL PEAK  4(1Q42.2) WILD-TYPE     15     20     18      8     19     11
D22V6, multiclass
        clus
vv       DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  CLUS_1                           2                            15
  CLUS_2                           0                            20
  CLUS_3                           0                            18
  CLUS_4                           0                             8
  CLUS_5                           1                            19
  CLUS_6                           1                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.2) MUTATED        3      1      0
  DEL PEAK  4(1Q42.2) WILD-TYPE     38     22     31
D22V7, multiclass
        clus
vv       DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           1                            22
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(1Q42.2) MUTATED        4      0      0
  DEL PEAK  4(1Q42.2) WILD-TYPE     44     28     19
D22V8, multiclass
        clus
vv       DEL PEAK  4(1Q42.2) MUTATED DEL PEAK  4(1Q42.2) WILD-TYPE
  CLUS_1                           4                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  5(2P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P23.3) MUTATED        5      1      3      2
  DEL PEAK  5(2P23.3) WILD-TYPE     24     45     15      7
D23V1, multiclass
        clus
vv       DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE
  CLUS_1                           5                            24
  CLUS_2                           1                            45
  CLUS_3                           3                            15
  CLUS_4                           2                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P23.3) MUTATED        8      1      2
  DEL PEAK  5(2P23.3) WILD-TYPE     41     25     24
D23V2, multiclass
        clus
vv       DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE
  CLUS_1                           8                            41
  CLUS_2                           1                            25
  CLUS_3                           2                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P23.3) MUTATED        8      1      2
  DEL PEAK  5(2P23.3) WILD-TYPE     38     25     21
D23V3, multiclass
        clus
vv       DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE
  CLUS_1                           8                            38
  CLUS_2                           1                            25
  CLUS_3                           2                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2P23.3) MUTATED        6      0      1      3      1      0
  DEL PEAK  5(2P23.3) WILD-TYPE     21     13     13      9     21      7
D23V4, multiclass
        clus
vv       DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE
  CLUS_1                           6                            21
  CLUS_2                           0                            13
  CLUS_3                           1                            13
  CLUS_4                           3                             9
  CLUS_5                           1                            21
  CLUS_6                           0                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2P23.3) MUTATED        7      1      2      1
  DEL PEAK  5(2P23.3) WILD-TYPE     30     24     11     19
D23V5, multiclass
        clus
vv       DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE
  CLUS_1                           7                            30
  CLUS_2                           1                            24
  CLUS_3                           2                            11
  CLUS_4                           1                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2P23.3) MUTATED        4      1      1      0      4      1
  DEL PEAK  5(2P23.3) WILD-TYPE     13     19     17      8     16     11
D23V6, multiclass
        clus
vv       DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE
  CLUS_1                           4                            13
  CLUS_2                           1                            19
  CLUS_3                           1                            17
  CLUS_4                           0                             8
  CLUS_5                           4                            16
  CLUS_6                           1                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P23.3) MUTATED        7      1      3
  DEL PEAK  5(2P23.3) WILD-TYPE     34     22     28
D23V7, multiclass
        clus
vv       DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           1                            22
  CLUS_3                           3                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2P23.3) MUTATED        9      1      1
  DEL PEAK  5(2P23.3) WILD-TYPE     39     27     18
D23V8, multiclass
        clus
vv       DEL PEAK  5(2P23.3) MUTATED DEL PEAK  5(2P23.3) WILD-TYPE
  CLUS_1                           9                            39
  CLUS_2                           1                            27
  CLUS_3                           1                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  6(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.3) MUTATED        3      0      0      1
  DEL PEAK  6(2Q37.3) WILD-TYPE     26     46     18      8
D24V1, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                           0                            46
  CLUS_3                           0                            18
  CLUS_4                           1                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.3) MUTATED        4      0      0
  DEL PEAK  6(2Q37.3) WILD-TYPE     45     26     26
D24V2, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           4                            45
  CLUS_2                           0                            26
  CLUS_3                           0                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.3) MUTATED        4      0      0
  DEL PEAK  6(2Q37.3) WILD-TYPE     42     26     23
D24V3, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           4                            42
  CLUS_2                           0                            26
  CLUS_3                           0                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q37.3) MUTATED        3      0      0      1      0      0
  DEL PEAK  6(2Q37.3) WILD-TYPE     24     13     14     11     22      7
D24V4, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           0                            13
  CLUS_3                           0                            14
  CLUS_4                           1                            11
  CLUS_5                           0                            22
  CLUS_6                           0                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.3) MUTATED        3      0      0      1
  DEL PEAK  6(2Q37.3) WILD-TYPE     34     25     13     19
D24V5, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                           0                            25
  CLUS_3                           0                            13
  CLUS_4                           1                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q37.3) MUTATED        2      0      0      0      2      0
  DEL PEAK  6(2Q37.3) WILD-TYPE     15     20     18      8     18     12
D24V6, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           2                            15
  CLUS_2                           0                            20
  CLUS_3                           0                            18
  CLUS_4                           0                             8
  CLUS_5                           2                            18
  CLUS_6                           0                            12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.3) MUTATED        4      0      0
  DEL PEAK  6(2Q37.3) WILD-TYPE     37     23     31
D24V7, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           0                            23
  CLUS_3                           0                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.3) MUTATED        4      0      0
  DEL PEAK  6(2Q37.3) WILD-TYPE     44     28     19
D24V8, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           4                            44
  CLUS_2                           0                            28
  CLUS_3                           0                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  7(3P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P24.1) MUTATED       13      5      1      3
  DEL PEAK  7(3P24.1) WILD-TYPE     16     41     17      6
D25V1, multiclass
        clus
vv       DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE
  CLUS_1                          13                            16
  CLUS_2                           5                            41
  CLUS_3                           1                            17
  CLUS_4                           3                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P24.1) MUTATED       13      4      5
  DEL PEAK  7(3P24.1) WILD-TYPE     36     22     21
D25V2, multiclass
        clus
vv       DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE
  CLUS_1                          13                            36
  CLUS_2                           4                            22
  CLUS_3                           5                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P24.1) MUTATED       12      6      3
  DEL PEAK  7(3P24.1) WILD-TYPE     34     20     20
D25V3, multiclass
        clus
vv       DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE
  CLUS_1                          12                            34
  CLUS_2                           6                            20
  CLUS_3                           3                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P24.1) MUTATED        8      4      2      1      5      1
  DEL PEAK  7(3P24.1) WILD-TYPE     19      9     12     11     17      6
D25V4, multiclass
        clus
vv       DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE
  CLUS_1                           8                            19
  CLUS_2                           4                             9
  CLUS_3                           2                            12
  CLUS_4                           1                            11
  CLUS_5                           5                            17
  CLUS_6                           1                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P24.1) MUTATED        8      7      3      3
  DEL PEAK  7(3P24.1) WILD-TYPE     29     18     10     17
D25V5, multiclass
        clus
vv       DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE
  CLUS_1                           8                            29
  CLUS_2                           7                            18
  CLUS_3                           3                            10
  CLUS_4                           3                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P24.1) MUTATED        6      3      2      3      3      4
  DEL PEAK  7(3P24.1) WILD-TYPE     11     17     16      5     17      8
D25V6, multiclass
        clus
vv       DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE
  CLUS_1                           6                            11
  CLUS_2                           3                            17
  CLUS_3                           2                            16
  CLUS_4                           3                             5
  CLUS_5                           3                            17
  CLUS_6                           4                             8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P24.1) MUTATED       11      6      4
  DEL PEAK  7(3P24.1) WILD-TYPE     30     17     27
D25V7, multiclass
        clus
vv       DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                           6                            17
  CLUS_3                           4                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P24.1) MUTATED       13      6      2
  DEL PEAK  7(3P24.1) WILD-TYPE     35     22     17
D25V8, multiclass
        clus
vv       DEL PEAK  7(3P24.1) MUTATED DEL PEAK  7(3P24.1) WILD-TYPE
  CLUS_1                          13                            35
  CLUS_2                           6                            22
  CLUS_3                           2                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  8(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.2) MUTATED        7      5      4      1
  DEL PEAK  8(4Q35.2) WILD-TYPE     22     41     14      8
D26V1, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                           7                            22
  CLUS_2                           5                            41
  CLUS_3                           4                            14
  CLUS_4                           1                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       10      2      5
  DEL PEAK  8(4Q35.2) WILD-TYPE     39     24     21
D26V2, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          10                            39
  CLUS_2                           2                            24
  CLUS_3                           5                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED       10      3      3
  DEL PEAK  8(4Q35.2) WILD-TYPE     36     23     20
D26V3, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                          10                            36
  CLUS_2                           3                            23
  CLUS_3                           3                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q35.2) MUTATED        5      3      2      2      2      2
  DEL PEAK  8(4Q35.2) WILD-TYPE     22     10     12     10     20      5
D26V4, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                           3                            10
  CLUS_3                           2                            12
  CLUS_4                           2                            10
  CLUS_5                           2                            20
  CLUS_6                           2                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4Q35.2) MUTATED        7      4      2      3
  DEL PEAK  8(4Q35.2) WILD-TYPE     30     21     11     17
D26V5, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                           7                            30
  CLUS_2                           4                            21
  CLUS_3                           2                            11
  CLUS_4                           3                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4Q35.2) MUTATED        2      3      3      1      6      1
  DEL PEAK  8(4Q35.2) WILD-TYPE     15     17     15      7     14     11
D26V6, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                           2                            15
  CLUS_2                           3                            17
  CLUS_3                           3                            15
  CLUS_4                           1                             7
  CLUS_5                           6                            14
  CLUS_6                           1                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED        8      4      4
  DEL PEAK  8(4Q35.2) WILD-TYPE     33     19     27
D26V7, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           4                            19
  CLUS_3                           4                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4Q35.2) MUTATED        9      3      4
  DEL PEAK  8(4Q35.2) WILD-TYPE     39     25     15
D26V8, multiclass
        clus
vv       DEL PEAK  8(4Q35.2) MUTATED DEL PEAK  8(4Q35.2) WILD-TYPE
  CLUS_1                           9                            39
  CLUS_2                           3                            25
  CLUS_3                           4                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  9(5Q14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q14.2) MUTATED       16      3      4      1
  DEL PEAK  9(5Q14.2) WILD-TYPE     13     43     14      8
D27V1, multiclass
        clus
vv       DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                           3                            43
  CLUS_3                           4                            14
  CLUS_4                           1                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q14.2) MUTATED       17      4      3
  DEL PEAK  9(5Q14.2) WILD-TYPE     32     22     23
D27V2, multiclass
        clus
vv       DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE
  CLUS_1                          17                            32
  CLUS_2                           4                            22
  CLUS_3                           3                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q14.2) MUTATED       14      7      2
  DEL PEAK  9(5Q14.2) WILD-TYPE     32     19     21
D27V3, multiclass
        clus
vv       DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE
  CLUS_1                          14                            32
  CLUS_2                           7                            19
  CLUS_3                           2                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q14.2) MUTATED       11      4      2      1      5      0
  DEL PEAK  9(5Q14.2) WILD-TYPE     16      9     12     11     17      7
D27V4, multiclass
        clus
vv       DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE
  CLUS_1                          11                            16
  CLUS_2                           4                             9
  CLUS_3                           2                            12
  CLUS_4                           1                            11
  CLUS_5                           5                            17
  CLUS_6                           0                             7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q14.2) MUTATED       12      6      1      4
  DEL PEAK  9(5Q14.2) WILD-TYPE     25     19     12     16
D27V5, multiclass
        clus
vv       DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE
  CLUS_1                          12                            25
  CLUS_2                           6                            19
  CLUS_3                           1                            12
  CLUS_4                           4                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(5Q14.2) MUTATED        8      2      2      4      5      2
  DEL PEAK  9(5Q14.2) WILD-TYPE      9     18     16      4     15     10
D27V6, multiclass
        clus
vv       DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE
  CLUS_1                           8                             9
  CLUS_2                           2                            18
  CLUS_3                           2                            16
  CLUS_4                           4                             4
  CLUS_5                           5                            15
  CLUS_6                           2                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q14.2) MUTATED       16      4      3
  DEL PEAK  9(5Q14.2) WILD-TYPE     25     19     28
D27V7, multiclass
        clus
vv       DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE
  CLUS_1                          16                            25
  CLUS_2                           4                            19
  CLUS_3                           3                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q14.2) MUTATED       15      6      2
  DEL PEAK  9(5Q14.2) WILD-TYPE     33     22     17
D27V8, multiclass
        clus
vv       DEL PEAK  9(5Q14.2) MUTATED DEL PEAK  9(5Q14.2) WILD-TYPE
  CLUS_1                          15                            33
  CLUS_2                           6                            22
  CLUS_3                           2                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 10(6P25.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.2) MUTATED       21      7      7      7
  DEL PEAK 10(6P25.2) WILD-TYPE      8     39     11      2
D28V1, multiclass
        clus
vv       DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          21                             8
  CLUS_2                           7                            39
  CLUS_3                           7                            11
  CLUS_4                           7                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.2) MUTATED       31      4      6
  DEL PEAK 10(6P25.2) WILD-TYPE     18     22     20
D28V2, multiclass
        clus
vv       DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          31                            18
  CLUS_2                           4                            22
  CLUS_3                           6                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.2) MUTATED       22     12      4
  DEL PEAK 10(6P25.2) WILD-TYPE     24     14     19
D28V3, multiclass
        clus
vv       DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          22                            24
  CLUS_2                          12                            14
  CLUS_3                           4                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.2) MUTATED       14      8      2      4      8      2
  DEL PEAK 10(6P25.2) WILD-TYPE     13      5     12      8     14      5
D28V4, multiclass
        clus
vv       DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          14                            13
  CLUS_2                           8                             5
  CLUS_3                           2                            12
  CLUS_4                           4                             8
  CLUS_5                           8                            14
  CLUS_6                           2                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.2) MUTATED       20     10      3      5
  DEL PEAK 10(6P25.2) WILD-TYPE     17     15     10     15
D28V5, multiclass
        clus
vv       DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          20                            17
  CLUS_2                          10                            15
  CLUS_3                           3                            10
  CLUS_4                           5                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.2) MUTATED       11      5      3      5      6      8
  DEL PEAK 10(6P25.2) WILD-TYPE      6     15     15      3     14      4
D28V6, multiclass
        clus
vv       DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          11                             6
  CLUS_2                           5                            15
  CLUS_3                           3                            15
  CLUS_4                           5                             3
  CLUS_5                           6                            14
  CLUS_6                           8                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.2) MUTATED       20      9      9
  DEL PEAK 10(6P25.2) WILD-TYPE     21     14     22
D28V7, multiclass
        clus
vv       DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          20                            21
  CLUS_2                           9                            14
  CLUS_3                           9                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.2) MUTATED       25     10      3
  DEL PEAK 10(6P25.2) WILD-TYPE     23     18     16
D28V8, multiclass
        clus
vv       DEL PEAK 10(6P25.2) MUTATED DEL PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          25                            23
  CLUS_2                          10                            18
  CLUS_3                           3                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 11(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.1) MUTATED        8      0      1      2
  DEL PEAK 11(7Q36.1) WILD-TYPE     21     46     17      7
D29V1, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           8                            21
  CLUS_2                           0                            46
  CLUS_3                           1                            17
  CLUS_4                           2                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.1) MUTATED        8      1      2
  DEL PEAK 11(7Q36.1) WILD-TYPE     41     25     24
D29V2, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           8                            41
  CLUS_2                           1                            25
  CLUS_3                           2                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.1) MUTATED        6      2      2
  DEL PEAK 11(7Q36.1) WILD-TYPE     40     24     21
D29V3, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           6                            40
  CLUS_2                           2                            24
  CLUS_3                           2                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(7Q36.1) MUTATED        6      1      0      0      2      1
  DEL PEAK 11(7Q36.1) WILD-TYPE     21     12     14     12     20      6
D29V4, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           6                            21
  CLUS_2                           1                            12
  CLUS_3                           0                            14
  CLUS_4                           0                            12
  CLUS_5                           2                            20
  CLUS_6                           1                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q36.1) MUTATED        4      3      2      1
  DEL PEAK 11(7Q36.1) WILD-TYPE     33     22     11     19
D29V5, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           4                            33
  CLUS_2                           3                            22
  CLUS_3                           2                            11
  CLUS_4                           1                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(7Q36.1) MUTATED        4      0      1      3      1      1
  DEL PEAK 11(7Q36.1) WILD-TYPE     13     20     17      5     19     11
D29V6, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           4                            13
  CLUS_2                           0                            20
  CLUS_3                           1                            17
  CLUS_4                           3                             5
  CLUS_5                           1                            19
  CLUS_6                           1                            11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.1) MUTATED        5      2      3
  DEL PEAK 11(7Q36.1) WILD-TYPE     36     21     28
D29V7, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           2                            21
  CLUS_3                           3                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q36.1) MUTATED        6      3      1
  DEL PEAK 11(7Q36.1) WILD-TYPE     42     25     18
D29V8, multiclass
        clus
vv       DEL PEAK 11(7Q36.1) MUTATED DEL PEAK 11(7Q36.1) WILD-TYPE
  CLUS_1                           6                            42
  CLUS_2                           3                            25
  CLUS_3                           1                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 12(8P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P21.3) MUTATED       18      6      6      2
  DEL PEAK 12(8P21.3) WILD-TYPE     11     40     12      7
D30V1, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          18                            11
  CLUS_2                           6                            40
  CLUS_3                           6                            12
  CLUS_4                           2                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P21.3) MUTATED       23      3      5
  DEL PEAK 12(8P21.3) WILD-TYPE     26     23     21
D30V2, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          23                            26
  CLUS_2                           3                            23
  CLUS_3                           5                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P21.3) MUTATED       21      7      2
  DEL PEAK 12(8P21.3) WILD-TYPE     25     19     21
D30V3, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          21                            25
  CLUS_2                           7                            19
  CLUS_3                           2                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P21.3) MUTATED       13      5      1      5      5      1
  DEL PEAK 12(8P21.3) WILD-TYPE     14      8     13      7     17      6
D30V4, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          13                            14
  CLUS_2                           5                             8
  CLUS_3                           1                            13
  CLUS_4                           5                             7
  CLUS_5                           5                            17
  CLUS_6                           1                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P21.3) MUTATED       17      5      2      6
  DEL PEAK 12(8P21.3) WILD-TYPE     20     20     11     14
D30V5, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          17                            20
  CLUS_2                           5                            20
  CLUS_3                           2                            11
  CLUS_4                           6                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(8P21.3) MUTATED        9      2      2      5      5      7
  DEL PEAK 12(8P21.3) WILD-TYPE      8     18     16      3     15      5
D30V6, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                           9                             8
  CLUS_2                           2                            18
  CLUS_3                           2                            16
  CLUS_4                           5                             3
  CLUS_5                           5                            15
  CLUS_6                           7                             5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P21.3) MUTATED       20      5      5
  DEL PEAK 12(8P21.3) WILD-TYPE     21     18     26
D30V7, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          20                            21
  CLUS_2                           5                            18
  CLUS_3                           5                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P21.3) MUTATED       21      6      3
  DEL PEAK 12(8P21.3) WILD-TYPE     27     22     16
D30V8, multiclass
        clus
vv       DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE
  CLUS_1                          21                            27
  CLUS_2                           6                            22
  CLUS_3                           3                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 13(8Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8Q12.1) MUTATED        2      4      3      0
  DEL PEAK 13(8Q12.1) WILD-TYPE     27     42     15      9
D31V1, multiclass
        clus
vv       DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE
  CLUS_1                           2                            27
  CLUS_2                           4                            42
  CLUS_3                           3                            15
  CLUS_4                           0                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q12.1) MUTATED        5      1      3
  DEL PEAK 13(8Q12.1) WILD-TYPE     44     25     23
D31V2, multiclass
        clus
vv       DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE
  CLUS_1                           5                            44
  CLUS_2                           1                            25
  CLUS_3                           3                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q12.1) MUTATED        7      1      1
  DEL PEAK 13(8Q12.1) WILD-TYPE     39     25     22
D31V3, multiclass
        clus
vv       DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE
  CLUS_1                           7                            39
  CLUS_2                           1                            25
  CLUS_3                           1                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8Q12.1) MUTATED        4      0      1      2      1      1
  DEL PEAK 13(8Q12.1) WILD-TYPE     23     13     13     10     21      6
D31V4, multiclass
        clus
vv       DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE
  CLUS_1                           4                            23
  CLUS_2                           0                            13
  CLUS_3                           1                            13
  CLUS_4                           2                            10
  CLUS_5                           1                            21
  CLUS_6                           1                             6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(8Q12.1) MUTATED        5      1      1      2
  DEL PEAK 13(8Q12.1) WILD-TYPE     32     24     12     18
D31V5, multiclass
        clus
vv       DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE
  CLUS_1                           5                            32
  CLUS_2                           1                            24
  CLUS_3                           1                            12
  CLUS_4                           2                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(8Q12.1) MUTATED        3      1      1      1      1      2
  DEL PEAK 13(8Q12.1) WILD-TYPE     14     19     17      7     19     10
D31V6, multiclass
        clus
vv       DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE
  CLUS_1                           3                            14
  CLUS_2                           1                            19
  CLUS_3                           1                            17
  CLUS_4                           1                             7
  CLUS_5                           1                            19
  CLUS_6                           2                            10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q12.1) MUTATED        6      1      2
  DEL PEAK 13(8Q12.1) WILD-TYPE     35     22     29
D31V7, multiclass
        clus
vv       DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           1                            22
  CLUS_3                           2                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(8Q12.1) MUTATED        6      1      2
  DEL PEAK 13(8Q12.1) WILD-TYPE     42     27     17
D31V8, multiclass
        clus
vv       DEL PEAK 13(8Q12.1) MUTATED DEL PEAK 13(8Q12.1) WILD-TYPE
  CLUS_1                           6                            42
  CLUS_2                           1                            27
  CLUS_3                           2                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 14(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P21.3) MUTATED       27     15     17      8
  DEL PEAK 14(9P21.3) WILD-TYPE      2     31      1      1
D32V1, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          27                             2
  CLUS_2                          15                            31
  CLUS_3                          17                             1
  CLUS_4                           8                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       43     10     13
  DEL PEAK 14(9P21.3) WILD-TYPE      6     16     13
D32V2, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          43                             6
  CLUS_2                          10                            16
  CLUS_3                          13                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       39     15      6
  DEL PEAK 14(9P21.3) WILD-TYPE      7     11     17
D32V3, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          39                             7
  CLUS_2                          15                            11
  CLUS_3                           6                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P21.3) MUTATED       26     10      4      7     10      3
  DEL PEAK 14(9P21.3) WILD-TYPE      1      3     10      5     12      4
D32V4, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          26                             1
  CLUS_2                          10                             3
  CLUS_3                           4                            10
  CLUS_4                           7                             5
  CLUS_5                          10                            12
  CLUS_6                           3                             4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P21.3) MUTATED       34     12      4     10
  DEL PEAK 14(9P21.3) WILD-TYPE      3     13      9     10
D32V5, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          34                             3
  CLUS_2                          12                            13
  CLUS_3                           4                             9
  CLUS_4                          10                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(9P21.3) MUTATED       17      8      5      6     14     10
  DEL PEAK 14(9P21.3) WILD-TYPE      0     12     13      2      6      2
D32V6, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          17                             0
  CLUS_2                           8                            12
  CLUS_3                           5                            13
  CLUS_4                           6                             2
  CLUS_5                          14                             6
  CLUS_6                          10                             2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       36     13     11
  DEL PEAK 14(9P21.3) WILD-TYPE      5     10     20
D32V7, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          36                             5
  CLUS_2                          13                            10
  CLUS_3                          11                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       41     13      6
  DEL PEAK 14(9P21.3) WILD-TYPE      7     15     13
D32V8, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          41                             7
  CLUS_2                          13                            15
  CLUS_3                           6                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 15(9Q22.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9Q22.33) MUTATED       10      8      4      5
  DEL PEAK 15(9Q22.33) WILD-TYPE     19     38     14      4
D33V1, multiclass
        clus
vv       DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                            8                             38
  CLUS_3                            4                             14
  CLUS_4                            5                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9Q22.33) MUTATED       12      8      6
  DEL PEAK 15(9Q22.33) WILD-TYPE     37     18     20
D33V2, multiclass
        clus
vv       DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE
  CLUS_1                           12                             37
  CLUS_2                            8                             18
  CLUS_3                            6                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9Q22.33) MUTATED       12      7      3
  DEL PEAK 15(9Q22.33) WILD-TYPE     34     19     20
D33V3, multiclass
        clus
vv       DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE
  CLUS_1                           12                             34
  CLUS_2                            7                             19
  CLUS_3                            3                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9Q22.33) MUTATED        9      3      2      2      5      1
  DEL PEAK 15(9Q22.33) WILD-TYPE     18     10     12     10     17      6
D33V4, multiclass
        clus
vv       DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                            3                             10
  CLUS_3                            2                             12
  CLUS_4                            2                             10
  CLUS_5                            5                             17
  CLUS_6                            1                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9Q22.33) MUTATED       10      7      2      3
  DEL PEAK 15(9Q22.33) WILD-TYPE     27     18     11     17
D33V5, multiclass
        clus
vv       DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                            7                             18
  CLUS_3                            2                             11
  CLUS_4                            3                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(9Q22.33) MUTATED        7      4      3      3      4      1
  DEL PEAK 15(9Q22.33) WILD-TYPE     10     16     15      5     16     11
D33V6, multiclass
        clus
vv       DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE
  CLUS_1                            7                             10
  CLUS_2                            4                             16
  CLUS_3                            3                             15
  CLUS_4                            3                              5
  CLUS_5                            4                             16
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9Q22.33) MUTATED       12      6      4
  DEL PEAK 15(9Q22.33) WILD-TYPE     29     17     27
D33V7, multiclass
        clus
vv       DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                            6                             17
  CLUS_3                            4                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9Q22.33) MUTATED       12      7      3
  DEL PEAK 15(9Q22.33) WILD-TYPE     36     21     16
D33V8, multiclass
        clus
vv       DEL PEAK 15(9Q22.33) MUTATED DEL PEAK 15(9Q22.33) WILD-TYPE
  CLUS_1                           12                             36
  CLUS_2                            7                             21
  CLUS_3                            3                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 16(10Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.2) MUTATED       12      2      2      3
  DEL PEAK 16(10Q23.2) WILD-TYPE     17     44     16      6
D34V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE
  CLUS_1                           12                             17
  CLUS_2                            2                             44
  CLUS_3                            2                             16
  CLUS_4                            3                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.2) MUTATED       13      2      3
  DEL PEAK 16(10Q23.2) WILD-TYPE     36     24     23
D34V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE
  CLUS_1                           13                             36
  CLUS_2                            2                             24
  CLUS_3                            3                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.2) MUTATED       12      4      1
  DEL PEAK 16(10Q23.2) WILD-TYPE     34     22     22
D34V3, multiclass
        clus
vv       DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE
  CLUS_1                           12                             34
  CLUS_2                            4                             22
  CLUS_3                            1                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.2) MUTATED        9      0      0      3      4      1
  DEL PEAK 16(10Q23.2) WILD-TYPE     18     13     14      9     18      6
D34V4, multiclass
        clus
vv       DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                            0                             13
  CLUS_3                            0                             14
  CLUS_4                            3                              9
  CLUS_5                            4                             18
  CLUS_6                            1                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.2) MUTATED        7      4      1      5
  DEL PEAK 16(10Q23.2) WILD-TYPE     30     21     12     15
D34V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE
  CLUS_1                            7                             30
  CLUS_2                            4                             21
  CLUS_3                            1                             12
  CLUS_4                            5                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(10Q23.2) MUTATED        6      2      0      2      6      1
  DEL PEAK 16(10Q23.2) WILD-TYPE     11     18     18      6     14     11
D34V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE
  CLUS_1                            6                             11
  CLUS_2                            2                             18
  CLUS_3                            0                             18
  CLUS_4                            2                              6
  CLUS_5                            6                             14
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.2) MUTATED        9      3      5
  DEL PEAK 16(10Q23.2) WILD-TYPE     32     20     26
D34V7, multiclass
        clus
vv       DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            3                             20
  CLUS_3                            5                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.2) MUTATED       13      4      0
  DEL PEAK 16(10Q23.2) WILD-TYPE     35     24     19
D34V8, multiclass
        clus
vv       DEL PEAK 16(10Q23.2) MUTATED DEL PEAK 16(10Q23.2) WILD-TYPE
  CLUS_1                           13                             35
  CLUS_2                            4                             24
  CLUS_3                            0                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 17(11P15.4) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.4) MUTATED       10      4      2      2
  DEL PEAK 17(11P15.4) WILD-TYPE     19     42     16      7
D35V1, multiclass
        clus
vv       DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                            4                             42
  CLUS_3                            2                             16
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.4) MUTATED        9      4      5
  DEL PEAK 17(11P15.4) WILD-TYPE     40     22     21
D35V2, multiclass
        clus
vv       DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE
  CLUS_1                            9                             40
  CLUS_2                            4                             22
  CLUS_3                            5                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.4) MUTATED        8      6      2
  DEL PEAK 17(11P15.4) WILD-TYPE     38     20     21
D35V3, multiclass
        clus
vv       DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE
  CLUS_1                            8                             38
  CLUS_2                            6                             20
  CLUS_3                            2                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.4) MUTATED        6      3      1      0      5      1
  DEL PEAK 17(11P15.4) WILD-TYPE     21     10     13     12     17      6
D35V4, multiclass
        clus
vv       DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                            3                             10
  CLUS_3                            1                             13
  CLUS_4                            0                             12
  CLUS_5                            5                             17
  CLUS_6                            1                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(11P15.4) MUTATED        8      5      1      2
  DEL PEAK 17(11P15.4) WILD-TYPE     29     20     12     18
D35V5, multiclass
        clus
vv       DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE
  CLUS_1                            8                             29
  CLUS_2                            5                             20
  CLUS_3                            1                             12
  CLUS_4                            2                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(11P15.4) MUTATED        2      4      2      1      4      3
  DEL PEAK 17(11P15.4) WILD-TYPE     15     16     16      7     16      9
D35V6, multiclass
        clus
vv       DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE
  CLUS_1                            2                             15
  CLUS_2                            4                             16
  CLUS_3                            2                             16
  CLUS_4                            1                              7
  CLUS_5                            4                             16
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.4) MUTATED        8      4      4
  DEL PEAK 17(11P15.4) WILD-TYPE     33     19     27
D35V7, multiclass
        clus
vv       DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                            4                             19
  CLUS_3                            4                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(11P15.4) MUTATED        9      5      2
  DEL PEAK 17(11P15.4) WILD-TYPE     39     23     17
D35V8, multiclass
        clus
vv       DEL PEAK 17(11P15.4) MUTATED DEL PEAK 17(11P15.4) WILD-TYPE
  CLUS_1                            9                             39
  CLUS_2                            5                             23
  CLUS_3                            2                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 18(12P12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12P12.3) MUTATED        6      0      6      3
  DEL PEAK 18(12P12.3) WILD-TYPE     23     46     12      6
D36V1, multiclass
        clus
vv       DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            0                             46
  CLUS_3                            6                             12
  CLUS_4                            3                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P12.3) MUTATED       13      0      2
  DEL PEAK 18(12P12.3) WILD-TYPE     36     26     24
D36V2, multiclass
        clus
vv       DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                           13                             36
  CLUS_2                            0                             26
  CLUS_3                            2                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P12.3) MUTATED       10      2      1
  DEL PEAK 18(12P12.3) WILD-TYPE     36     24     22
D36V3, multiclass
        clus
vv       DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                           10                             36
  CLUS_2                            2                             24
  CLUS_3                            1                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12P12.3) MUTATED        7      3      0      1      1      1
  DEL PEAK 18(12P12.3) WILD-TYPE     20     10     14     11     21      6
D36V4, multiclass
        clus
vv       DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                            3                             10
  CLUS_3                            0                             14
  CLUS_4                            1                             11
  CLUS_5                            1                             21
  CLUS_6                            1                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(12P12.3) MUTATED       10      1      1      1
  DEL PEAK 18(12P12.3) WILD-TYPE     27     24     12     19
D36V5, multiclass
        clus
vv       DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                           10                             27
  CLUS_2                            1                             24
  CLUS_3                            1                             12
  CLUS_4                            1                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(12P12.3) MUTATED        3      0      1      1      4      4
  DEL PEAK 18(12P12.3) WILD-TYPE     14     20     17      7     16      8
D36V6, multiclass
        clus
vv       DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                            3                             14
  CLUS_2                            0                             20
  CLUS_3                            1                             17
  CLUS_4                            1                              7
  CLUS_5                            4                             16
  CLUS_6                            4                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P12.3) MUTATED        9      2      2
  DEL PEAK 18(12P12.3) WILD-TYPE     32     21     29
D36V7, multiclass
        clus
vv       DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            2                             21
  CLUS_3                            2                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(12P12.3) MUTATED       11      1      1
  DEL PEAK 18(12P12.3) WILD-TYPE     37     27     18
D36V8, multiclass
        clus
vv       DEL PEAK 18(12P12.3) MUTATED DEL PEAK 18(12P12.3) WILD-TYPE
  CLUS_1                           11                             37
  CLUS_2                            1                             27
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 19(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q12) MUTATED        5      0      3      3
  DEL PEAK 19(12Q12) WILD-TYPE     24     46     15      6
D37V1, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          5                           24
  CLUS_2                          0                           46
  CLUS_3                          3                           15
  CLUS_4                          3                            6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED       10      0      1
  DEL PEAK 19(12Q12) WILD-TYPE     39     26     25
D37V2, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                         10                           39
  CLUS_2                          0                           26
  CLUS_3                          1                           25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED        8      1      1
  DEL PEAK 19(12Q12) WILD-TYPE     38     25     22
D37V3, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          8                           38
  CLUS_2                          1                           25
  CLUS_3                          1                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(12Q12) MUTATED        8      1      0      0      1      0
  DEL PEAK 19(12Q12) WILD-TYPE     19     12     14     12     21      7
D37V4, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          8                           19
  CLUS_2                          1                           12
  CLUS_3                          0                           14
  CLUS_4                          0                           12
  CLUS_5                          1                           21
  CLUS_6                          0                            7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(12Q12) MUTATED        7      1      1      1
  DEL PEAK 19(12Q12) WILD-TYPE     30     24     12     19
D37V5, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          7                           30
  CLUS_2                          1                           24
  CLUS_3                          1                           12
  CLUS_4                          1                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(12Q12) MUTATED        5      1      0      0      2      2
  DEL PEAK 19(12Q12) WILD-TYPE     12     19     18      8     18     10
D37V6, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          5                           12
  CLUS_2                          1                           19
  CLUS_3                          0                           18
  CLUS_4                          0                            8
  CLUS_5                          2                           18
  CLUS_6                          2                           10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED        7      1      2
  DEL PEAK 19(12Q12) WILD-TYPE     34     22     29
D37V7, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          7                           34
  CLUS_2                          1                           22
  CLUS_3                          2                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(12Q12) MUTATED        9      1      0
  DEL PEAK 19(12Q12) WILD-TYPE     39     27     19
D37V8, multiclass
        clus
vv       DEL PEAK 19(12Q12) MUTATED DEL PEAK 19(12Q12) WILD-TYPE
  CLUS_1                          9                           39
  CLUS_2                          1                           27
  CLUS_3                          0                           19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 20(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q24.33) MUTATED       12      4      3      3
  DEL PEAK 20(12Q24.33) WILD-TYPE     17     42     15      6
D38V1, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            12                              17
  CLUS_2                             4                              42
  CLUS_3                             3                              15
  CLUS_4                             3                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q24.33) MUTATED       16      3      3
  DEL PEAK 20(12Q24.33) WILD-TYPE     33     23     23
D38V2, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            16                              33
  CLUS_2                             3                              23
  CLUS_3                             3                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q24.33) MUTATED       16      3      1
  DEL PEAK 20(12Q24.33) WILD-TYPE     30     23     22
D38V3, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            16                              30
  CLUS_2                             3                              23
  CLUS_3                             1                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12Q24.33) MUTATED       11      3      0      3      3      0
  DEL PEAK 20(12Q24.33) WILD-TYPE     16     10     14      9     19      7
D38V4, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            11                              16
  CLUS_2                             3                              10
  CLUS_3                             0                              14
  CLUS_4                             3                               9
  CLUS_5                             3                              19
  CLUS_6                             0                               7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q24.33) MUTATED       11      4      1      4
  DEL PEAK 20(12Q24.33) WILD-TYPE     26     21     12     16
D38V5, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            11                              26
  CLUS_2                             4                              21
  CLUS_3                             1                              12
  CLUS_4                             4                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(12Q24.33) MUTATED        7      3      0      3      5      2
  DEL PEAK 20(12Q24.33) WILD-TYPE     10     17     18      5     15     10
D38V6, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                             7                              10
  CLUS_2                             3                              17
  CLUS_3                             0                              18
  CLUS_4                             3                               5
  CLUS_5                             5                              15
  CLUS_6                             2                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q24.33) MUTATED       12      3      5
  DEL PEAK 20(12Q24.33) WILD-TYPE     29     20     26
D38V7, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            12                              29
  CLUS_2                             3                              20
  CLUS_3                             5                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q24.33) MUTATED       14      5      1
  DEL PEAK 20(12Q24.33) WILD-TYPE     34     23     18
D38V8, multiclass
        clus
vv       DEL PEAK 20(12Q24.33) MUTATED DEL PEAK 20(12Q24.33) WILD-TYPE
  CLUS_1                            14                              34
  CLUS_2                             5                              23
  CLUS_3                             1                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 21(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(15Q15.1) MUTATED       15      1      4      3
  DEL PEAK 21(15Q15.1) WILD-TYPE     14     45     14      6
D39V1, multiclass
        clus
vv       DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE
  CLUS_1                           15                             14
  CLUS_2                            1                             45
  CLUS_3                            4                             14
  CLUS_4                            3                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(15Q15.1) MUTATED       19      1      2
  DEL PEAK 21(15Q15.1) WILD-TYPE     30     25     24
D39V2, multiclass
        clus
vv       DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE
  CLUS_1                           19                             30
  CLUS_2                            1                             25
  CLUS_3                            2                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(15Q15.1) MUTATED       17      4      1
  DEL PEAK 21(15Q15.1) WILD-TYPE     29     22     22
D39V3, multiclass
        clus
vv       DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE
  CLUS_1                           17                             29
  CLUS_2                            4                             22
  CLUS_3                            1                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(15Q15.1) MUTATED       11      3      0      5      3      0
  DEL PEAK 21(15Q15.1) WILD-TYPE     16     10     14      7     19      7
D39V4, multiclass
        clus
vv       DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                            3                             10
  CLUS_3                            0                             14
  CLUS_4                            5                              7
  CLUS_5                            3                             19
  CLUS_6                            0                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(15Q15.1) MUTATED       13      5      1      3
  DEL PEAK 21(15Q15.1) WILD-TYPE     24     20     12     17
D39V5, multiclass
        clus
vv       DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE
  CLUS_1                           13                             24
  CLUS_2                            5                             20
  CLUS_3                            1                             12
  CLUS_4                            3                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(15Q15.1) MUTATED        8      3      0      2      6      3
  DEL PEAK 21(15Q15.1) WILD-TYPE      9     17     18      6     14      9
D39V6, multiclass
        clus
vv       DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE
  CLUS_1                            8                              9
  CLUS_2                            3                             17
  CLUS_3                            0                             18
  CLUS_4                            2                              6
  CLUS_5                            6                             14
  CLUS_6                            3                              9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(15Q15.1) MUTATED       14      5      3
  DEL PEAK 21(15Q15.1) WILD-TYPE     27     18     28
D39V7, multiclass
        clus
vv       DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                            5                             18
  CLUS_3                            3                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(15Q15.1) MUTATED       17      4      1
  DEL PEAK 21(15Q15.1) WILD-TYPE     31     24     18
D39V8, multiclass
        clus
vv       DEL PEAK 21(15Q15.1) MUTATED DEL PEAK 21(15Q15.1) WILD-TYPE
  CLUS_1                           17                             31
  CLUS_2                            4                             24
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 22(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(16Q23.1) MUTATED        3      1      3      0
  DEL PEAK 22(16Q23.1) WILD-TYPE     26     45     15      9
D40V1, multiclass
        clus
vv       DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE
  CLUS_1                            3                             26
  CLUS_2                            1                             45
  CLUS_3                            3                             15
  CLUS_4                            0                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(16Q23.1) MUTATED        4      2      1
  DEL PEAK 22(16Q23.1) WILD-TYPE     45     24     25
D40V2, multiclass
        clus
vv       DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE
  CLUS_1                            4                             45
  CLUS_2                            2                             24
  CLUS_3                            1                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(16Q23.1) MUTATED        4      2      0
  DEL PEAK 22(16Q23.1) WILD-TYPE     42     24     23
D40V3, multiclass
        clus
vv       DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE
  CLUS_1                            4                             42
  CLUS_2                            2                             24
  CLUS_3                            0                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(16Q23.1) MUTATED        2      0      0      2      2      0
  DEL PEAK 22(16Q23.1) WILD-TYPE     25     13     14     10     20      7
D40V4, multiclass
        clus
vv       DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            0                             13
  CLUS_3                            0                             14
  CLUS_4                            2                             10
  CLUS_5                            2                             20
  CLUS_6                            0                              7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(16Q23.1) MUTATED        3      2      0      1
  DEL PEAK 22(16Q23.1) WILD-TYPE     34     23     13     19
D40V5, multiclass
        clus
vv       DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                            2                             23
  CLUS_3                            0                             13
  CLUS_4                            1                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(16Q23.1) MUTATED        0      2      0      1      2      1
  DEL PEAK 22(16Q23.1) WILD-TYPE     17     18     18      7     18     11
D40V6, multiclass
        clus
vv       DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE
  CLUS_1                            0                             17
  CLUS_2                            2                             18
  CLUS_3                            0                             18
  CLUS_4                            1                              7
  CLUS_5                            2                             18
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(16Q23.1) MUTATED        3      2      1
  DEL PEAK 22(16Q23.1) WILD-TYPE     38     21     30
D40V7, multiclass
        clus
vv       DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            2                             21
  CLUS_3                            1                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(16Q23.1) MUTATED        3      2      1
  DEL PEAK 22(16Q23.1) WILD-TYPE     45     26     18
D40V8, multiclass
        clus
vv       DEL PEAK 22(16Q23.1) MUTATED DEL PEAK 22(16Q23.1) WILD-TYPE
  CLUS_1                            3                             45
  CLUS_2                            2                             26
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 23(17Q22) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q22) MUTATED       18      1      5      4
  DEL PEAK 23(17Q22) WILD-TYPE     11     45     13      5
D41V1, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         18                           11
  CLUS_2                          1                           45
  CLUS_3                          5                           13
  CLUS_4                          4                            5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q22) MUTATED       22      2      4
  DEL PEAK 23(17Q22) WILD-TYPE     27     24     22
D41V2, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         22                           27
  CLUS_2                          2                           24
  CLUS_3                          4                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q22) MUTATED       17      7      2
  DEL PEAK 23(17Q22) WILD-TYPE     29     19     21
D41V3, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         17                           29
  CLUS_2                          7                           19
  CLUS_3                          2                           21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q22) MUTATED       11      7      1      2      4      1
  DEL PEAK 23(17Q22) WILD-TYPE     16      6     13     10     18      6
D41V4, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         11                           16
  CLUS_2                          7                            6
  CLUS_3                          1                           13
  CLUS_4                          2                           10
  CLUS_5                          4                           18
  CLUS_6                          1                            6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(17Q22) MUTATED       15      6      2      3
  DEL PEAK 23(17Q22) WILD-TYPE     22     19     11     17
D41V5, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         15                           22
  CLUS_2                          6                           19
  CLUS_3                          2                           11
  CLUS_4                          3                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(17Q22) MUTATED        9      2      2      4      4      5
  DEL PEAK 23(17Q22) WILD-TYPE      8     18     16      4     16      7
D41V6, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                          9                            8
  CLUS_2                          2                           18
  CLUS_3                          2                           16
  CLUS_4                          4                            4
  CLUS_5                          4                           16
  CLUS_6                          5                            7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q22) MUTATED       17      6      3
  DEL PEAK 23(17Q22) WILD-TYPE     24     17     28
D41V7, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         17                           24
  CLUS_2                          6                           17
  CLUS_3                          3                           28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(17Q22) MUTATED       18      6      2
  DEL PEAK 23(17Q22) WILD-TYPE     30     22     17
D41V8, multiclass
        clus
vv       DEL PEAK 23(17Q22) MUTATED DEL PEAK 23(17Q22) WILD-TYPE
  CLUS_1                         18                           30
  CLUS_2                          6                           22
  CLUS_3                          2                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 24(18P11.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18P11.32) MUTATED       14     17      7      0
  DEL PEAK 24(18P11.32) WILD-TYPE     15     29     11      9
D42V1, multiclass
        clus
vv       DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE
  CLUS_1                            14                              15
  CLUS_2                            17                              29
  CLUS_3                             7                              11
  CLUS_4                             0                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18P11.32) MUTATED       19      7     12
  DEL PEAK 24(18P11.32) WILD-TYPE     30     19     14
D42V2, multiclass
        clus
vv       DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE
  CLUS_1                            19                              30
  CLUS_2                             7                              19
  CLUS_3                            12                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18P11.32) MUTATED       18     11      8
  DEL PEAK 24(18P11.32) WILD-TYPE     28     15     15
D42V3, multiclass
        clus
vv       DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE
  CLUS_1                            18                              28
  CLUS_2                            11                              15
  CLUS_3                             8                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(18P11.32) MUTATED       13      6      4      4      7      3
  DEL PEAK 24(18P11.32) WILD-TYPE     14      7     10      8     15      4
D42V4, multiclass
        clus
vv       DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE
  CLUS_1                            13                              14
  CLUS_2                             6                               7
  CLUS_3                             4                              10
  CLUS_4                             4                               8
  CLUS_5                             7                              15
  CLUS_6                             3                               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(18P11.32) MUTATED       16      8      5      8
  DEL PEAK 24(18P11.32) WILD-TYPE     21     17      8     12
D42V5, multiclass
        clus
vv       DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE
  CLUS_1                            16                              21
  CLUS_2                             8                              17
  CLUS_3                             5                               8
  CLUS_4                             8                              12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(18P11.32) MUTATED        9      9      8      3      6      2
  DEL PEAK 24(18P11.32) WILD-TYPE      8     11     10      5     14     10
D42V6, multiclass
        clus
vv       DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE
  CLUS_1                             9                               8
  CLUS_2                             9                              11
  CLUS_3                             8                              10
  CLUS_4                             3                               5
  CLUS_5                             6                              14
  CLUS_6                             2                              10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18P11.32) MUTATED       15      9     13
  DEL PEAK 24(18P11.32) WILD-TYPE     26     14     18
D42V7, multiclass
        clus
vv       DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE
  CLUS_1                            15                              26
  CLUS_2                             9                              14
  CLUS_3                            13                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(18P11.32) MUTATED       17     11      9
  DEL PEAK 24(18P11.32) WILD-TYPE     31     17     10
D42V8, multiclass
        clus
vv       DEL PEAK 24(18P11.32) MUTATED DEL PEAK 24(18P11.32) WILD-TYPE
  CLUS_1                            17                              31
  CLUS_2                            11                              17
  CLUS_3                             9                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 25(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(18Q21.2) MUTATED       25     23     18      7
  DEL PEAK 25(18Q21.2) WILD-TYPE      4     23      0      2
D43V1, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           25                              4
  CLUS_2                           23                             23
  CLUS_3                           18                              0
  CLUS_4                            7                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED       42     13     17
  DEL PEAK 25(18Q21.2) WILD-TYPE      7     13      9
D43V2, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           42                              7
  CLUS_2                           13                             13
  CLUS_3                           17                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED       37     20     10
  DEL PEAK 25(18Q21.2) WILD-TYPE      9      6     13
D43V3, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           37                              9
  CLUS_2                           20                              6
  CLUS_3                           10                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(18Q21.2) MUTATED       24     10      5      9     14      5
  DEL PEAK 25(18Q21.2) WILD-TYPE      3      3      9      3      8      2
D43V4, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           24                              3
  CLUS_2                           10                              3
  CLUS_3                            5                              9
  CLUS_4                            9                              3
  CLUS_5                           14                              8
  CLUS_6                            5                              2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(18Q21.2) MUTATED       32     16      7     12
  DEL PEAK 25(18Q21.2) WILD-TYPE      5      9      6      8
D43V5, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           32                              5
  CLUS_2                           16                              9
  CLUS_3                            7                              6
  CLUS_4                           12                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(18Q21.2) MUTATED       15     13      9      6     13     11
  DEL PEAK 25(18Q21.2) WILD-TYPE      2      7      9      2      7      1
D43V6, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           15                              2
  CLUS_2                           13                              7
  CLUS_3                            9                              9
  CLUS_4                            6                              2
  CLUS_5                           13                              7
  CLUS_6                           11                              1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED       35     15     17
  DEL PEAK 25(18Q21.2) WILD-TYPE      6      8     14
D43V7, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           35                              6
  CLUS_2                           15                              8
  CLUS_3                           17                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(18Q21.2) MUTATED       39     18     10
  DEL PEAK 25(18Q21.2) WILD-TYPE      9     10      9
D43V8, multiclass
        clus
vv       DEL PEAK 25(18Q21.2) MUTATED DEL PEAK 25(18Q21.2) WILD-TYPE
  CLUS_1                           39                              9
  CLUS_2                           18                             10
  CLUS_3                           10                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 26(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(19P13.3) MUTATED       15      1      2      2
  DEL PEAK 26(19P13.3) WILD-TYPE     14     45     16      7
D44V1, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           15                             14
  CLUS_2                            1                             45
  CLUS_3                            2                             16
  CLUS_4                            2                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(19P13.3) MUTATED       17      1      2
  DEL PEAK 26(19P13.3) WILD-TYPE     32     25     24
D44V2, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           17                             32
  CLUS_2                            1                             25
  CLUS_3                            2                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(19P13.3) MUTATED       13      5      1
  DEL PEAK 26(19P13.3) WILD-TYPE     33     21     22
D44V3, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           13                             33
  CLUS_2                            5                             21
  CLUS_3                            1                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(19P13.3) MUTATED       11      2      0      1      4      1
  DEL PEAK 26(19P13.3) WILD-TYPE     16     11     14     11     18      6
D44V4, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                            2                             11
  CLUS_3                            0                             14
  CLUS_4                            1                             11
  CLUS_5                            4                             18
  CLUS_6                            1                              6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(19P13.3) MUTATED        9      5      1      4
  DEL PEAK 26(19P13.3) WILD-TYPE     28     20     12     16
D44V5, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                            9                             28
  CLUS_2                            5                             20
  CLUS_3                            1                             12
  CLUS_4                            4                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(19P13.3) MUTATED        8      1      1      5      3      1
  DEL PEAK 26(19P13.3) WILD-TYPE      9     19     17      3     17     11
D44V6, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                            8                              9
  CLUS_2                            1                             19
  CLUS_3                            1                             17
  CLUS_4                            5                              3
  CLUS_5                            3                             17
  CLUS_6                            1                             11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(19P13.3) MUTATED       13      3      3
  DEL PEAK 26(19P13.3) WILD-TYPE     28     20     28
D44V7, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           13                             28
  CLUS_2                            3                             20
  CLUS_3                            3                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(19P13.3) MUTATED       12      6      1
  DEL PEAK 26(19P13.3) WILD-TYPE     36     22     18
D44V8, multiclass
        clus
vv       DEL PEAK 26(19P13.3) MUTATED DEL PEAK 26(19P13.3) WILD-TYPE
  CLUS_1                           12                             36
  CLUS_2                            6                             22
  CLUS_3                            1                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 27(19Q13.41) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.41) MUTATED        7      2      2      0
  DEL PEAK 27(19Q13.41) WILD-TYPE     22     44     16      9
D45V1, multiclass
        clus
vv       DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE
  CLUS_1                             7                              22
  CLUS_2                             2                              44
  CLUS_3                             2                              16
  CLUS_4                             0                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.41) MUTATED        7      1      3
  DEL PEAK 27(19Q13.41) WILD-TYPE     42     25     23
D45V2, multiclass
        clus
vv       DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE
  CLUS_1                             7                              42
  CLUS_2                             1                              25
  CLUS_3                             3                              23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.41) MUTATED        7      2      1
  DEL PEAK 27(19Q13.41) WILD-TYPE     39     24     22
D45V3, multiclass
        clus
vv       DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE
  CLUS_1                             7                              39
  CLUS_2                             2                              24
  CLUS_3                             1                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(19Q13.41) MUTATED        6      1      0      1      1      1
  DEL PEAK 27(19Q13.41) WILD-TYPE     21     12     14     11     21      6
D45V4, multiclass
        clus
vv       DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE
  CLUS_1                             6                              21
  CLUS_2                             1                              12
  CLUS_3                             0                              14
  CLUS_4                             1                              11
  CLUS_5                             1                              21
  CLUS_6                             1                               6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(19Q13.41) MUTATED        3      2      1      4
  DEL PEAK 27(19Q13.41) WILD-TYPE     34     23     12     16
D45V5, multiclass
        clus
vv       DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE
  CLUS_1                             3                              34
  CLUS_2                             2                              23
  CLUS_3                             1                              12
  CLUS_4                             4                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(19Q13.41) MUTATED        4      3      1      0      2      0
  DEL PEAK 27(19Q13.41) WILD-TYPE     13     17     17      8     18     12
D45V6, multiclass
        clus
vv       DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE
  CLUS_1                             4                              13
  CLUS_2                             3                              17
  CLUS_3                             1                              17
  CLUS_4                             0                               8
  CLUS_5                             2                              18
  CLUS_6                             0                              12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.41) MUTATED        4      2      4
  DEL PEAK 27(19Q13.41) WILD-TYPE     37     21     27
D45V7, multiclass
        clus
vv       DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             2                              21
  CLUS_3                             4                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(19Q13.41) MUTATED        6      2      2
  DEL PEAK 27(19Q13.41) WILD-TYPE     42     26     17
D45V8, multiclass
        clus
vv       DEL PEAK 27(19Q13.41) MUTATED DEL PEAK 27(19Q13.41) WILD-TYPE
  CLUS_1                             6                              42
  CLUS_2                             2                              26
  CLUS_3                             2                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 28(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(21Q21.1) MUTATED       18      7      9      6
  DEL PEAK 28(21Q21.1) WILD-TYPE     11     39      9      3
D46V1, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                           18                             11
  CLUS_2                            7                             39
  CLUS_3                            9                              9
  CLUS_4                            6                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED       28      5      6
  DEL PEAK 28(21Q21.1) WILD-TYPE     21     21     20
D46V2, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                           28                             21
  CLUS_2                            5                             21
  CLUS_3                            6                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED       22     11      3
  DEL PEAK 28(21Q21.1) WILD-TYPE     24     15     20
D46V3, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                           22                             24
  CLUS_2                           11                             15
  CLUS_3                            3                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(21Q21.1) MUTATED       15      8      1      3      6      3
  DEL PEAK 28(21Q21.1) WILD-TYPE     12      5     13      9     16      4
D46V4, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                            8                              5
  CLUS_3                            1                             13
  CLUS_4                            3                              9
  CLUS_5                            6                             16
  CLUS_6                            3                              4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(21Q21.1) MUTATED       19     10      3      4
  DEL PEAK 28(21Q21.1) WILD-TYPE     18     15     10     16
D46V5, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                           19                             18
  CLUS_2                           10                             15
  CLUS_3                            3                             10
  CLUS_4                            4                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(21Q21.1) MUTATED        9      4      2      6      8      7
  DEL PEAK 28(21Q21.1) WILD-TYPE      8     16     16      2     12      5
D46V6, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                            9                              8
  CLUS_2                            4                             16
  CLUS_3                            2                             16
  CLUS_4                            6                              2
  CLUS_5                            8                             12
  CLUS_6                            7                              5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED       21      9      6
  DEL PEAK 28(21Q21.1) WILD-TYPE     20     14     25
D46V7, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                           21                             20
  CLUS_2                            9                             14
  CLUS_3                            6                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(21Q21.1) MUTATED       23     11      2
  DEL PEAK 28(21Q21.1) WILD-TYPE     25     17     17
D46V8, multiclass
        clus
vv       DEL PEAK 28(21Q21.1) MUTATED DEL PEAK 28(21Q21.1) WILD-TYPE
  CLUS_1                           23                             25
  CLUS_2                           11                             17
  CLUS_3                            2                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 29(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(22Q13.31) MUTATED       18      5      9      3
  DEL PEAK 29(22Q13.31) WILD-TYPE     11     41      9      6
D47V1, multiclass
        clus
vv       DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE
  CLUS_1                            18                              11
  CLUS_2                             5                              41
  CLUS_3                             9                               9
  CLUS_4                             3                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.31) MUTATED       27      3      5
  DEL PEAK 29(22Q13.31) WILD-TYPE     22     23     21
D47V2, multiclass
        clus
vv       DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE
  CLUS_1                            27                              22
  CLUS_2                             3                              23
  CLUS_3                             5                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.31) MUTATED       18     12      2
  DEL PEAK 29(22Q13.31) WILD-TYPE     28     14     21
D47V3, multiclass
        clus
vv       DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE
  CLUS_1                            18                              28
  CLUS_2                            12                              14
  CLUS_3                             2                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(22Q13.31) MUTATED       11      7      0      3      8      3
  DEL PEAK 29(22Q13.31) WILD-TYPE     16      6     14      9     14      4
D47V4, multiclass
        clus
vv       DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE
  CLUS_1                            11                              16
  CLUS_2                             7                               6
  CLUS_3                             0                              14
  CLUS_4                             3                               9
  CLUS_5                             8                              14
  CLUS_6                             3                               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(22Q13.31) MUTATED       17      8      2      5
  DEL PEAK 29(22Q13.31) WILD-TYPE     20     17     11     15
D47V5, multiclass
        clus
vv       DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE
  CLUS_1                            17                              20
  CLUS_2                             8                              17
  CLUS_3                             2                              11
  CLUS_4                             5                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(22Q13.31) MUTATED        9      5      1      5      4      8
  DEL PEAK 29(22Q13.31) WILD-TYPE      8     15     17      3     16      4
D47V6, multiclass
        clus
vv       DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE
  CLUS_1                             9                               8
  CLUS_2                             5                              15
  CLUS_3                             1                              17
  CLUS_4                             5                               3
  CLUS_5                             4                              16
  CLUS_6                             8                               4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.31) MUTATED       20      7      5
  DEL PEAK 29(22Q13.31) WILD-TYPE     21     16     26
D47V7, multiclass
        clus
vv       DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE
  CLUS_1                            20                              21
  CLUS_2                             7                              16
  CLUS_3                             5                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(22Q13.31) MUTATED       21      9      2
  DEL PEAK 29(22Q13.31) WILD-TYPE     27     19     17
D47V8, multiclass
        clus
vv       DEL PEAK 29(22Q13.31) MUTATED DEL PEAK 29(22Q13.31) WILD-TYPE
  CLUS_1                            21                              27
  CLUS_2                             9                              19
  CLUS_3                             2                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
